FFCP PHASE1:Hg19::chr2:12248310..12248334,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:12248310..12248334,- | |||
|description=CAGE_peak_at_chr2:12248310..12248334,- | |description=CAGE_peak_at_chr2:12248310..12248334,- | ||
|id=chr2:12248310..12248334,- | |id=chr2:12248310..12248334,- | ||
|ontology_enrichment_celltype=CL:0000188!3.97e-14!9;CL:0002564!5.44e-13!3;CL:0002590!3.50e-12!3;CL:0000183!7.26e-11!59;CL:0002556!3.15e-10!6;CL:0000055!2.01e-09!180;CL:0002602!3.00e-09!2;CL:0002600!4.82e-09!2;CL:0000187!6.61e-09!54;CL:0002549!1.01e-08!2;CL:0002575!1.32e-08!2;CL:0000680!2.71e-08!57;CL:0000056!2.71e-08!57;CL:0000355!2.71e-08!57;CL:0000393!9.58e-08!60;CL:0000211!9.58e-08!60;CL:0002552!2.44e-07!5 | |ontology_enrichment_celltype=CL:0000188!3.97e-14!9;CL:0002564!5.44e-13!3;CL:0002590!3.50e-12!3;CL:0000183!7.26e-11!59;CL:0002556!3.15e-10!6;CL:0000055!2.01e-09!180;CL:0002602!3.00e-09!2;CL:0002600!4.82e-09!2;CL:0000187!6.61e-09!54;CL:0002549!1.01e-08!2;CL:0002575!1.32e-08!2;CL:0000680!2.71e-08!57;CL:0000056!2.71e-08!57;CL:0000355!2.71e-08!57;CL:0000393!9.58e-08!60;CL:0000211!9.58e-08!60;CL:0002552!2.44e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002564;2.40e-38;3!CL:0000228;3.16e-29;1!CL:0002372;3.16e-29;1!CL:0002602;1.66e-15;2!CL:0002363;2.37e-15;2!CL:0000056;2.43e-08;4!CL:0000737;2.43e-08;4 | |ontology_enrichment_celltype_v019=CL:0002564;2.40e-38;3!CL:0000228;3.16e-29;1!CL:0002372;3.16e-29;1!CL:0002602;1.66e-15;2!CL:0002363;2.37e-15;2!CL:0000056;2.43e-08;4!CL:0000737;2.43e-08;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0002564,1.80e-38,3;CL:0000228,3.16e-29,1;CL:0002372,3.16e-29,1;CL:0002602,1.78e-15,2;CL:0002363,2.74e-15,2;CL:0000008,2.74e-15,2;CL:0000737,2.43e-08,4;CL:0000515,2.43e-08,4 | |||
|ontology_enrichment_development_v019=CL:0000008;2.37e-15;2!CL:0000515;2.43e-08;4 | |ontology_enrichment_development_v019=CL:0000008;2.37e-15;2!CL:0000515;2.43e-08;4 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5662;7.48e-30;1 | |ontology_enrichment_disease_v019=DOID:5662;7.48e-30;1 | ||
|ontology_enrichment_disease_v019_2=DOID:5662,7.48e-30,1 | |||
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|short_description=p@chr2:12248310..12248334,- | |short_description=p@chr2:12248310..12248334,- | ||
}} | }} |
Latest revision as of 00:00, 29 July 2015
Short description: | p@chr2:12248310..12248334, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:12248310..12248334, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 1.80e-38 | 3 |
multinucleate cell | 3.16e-29 | 1 |
myotube | 3.16e-29 | 1 |
annulus pulposus cell | 1.78e-15 | 2 |
keratocyte | 2.74e-15 | 2 |
migratory cranial neural crest cell | 2.74e-15 | 2 |
striated muscle cell | 2.43e-08 | 4 |
skeletal muscle myoblast | 2.43e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 3.24e-51 | 5 |
symphysis | 3.24e-51 | 5 |
nonsynovial joint | 3.24e-51 | 5 |
fibrous joint | 3.24e-51 | 5 |
cartilaginous joint | 3.24e-51 | 5 |
developing mesenchymal condensation | 3.24e-51 | 5 |
pre-cartilage condensation | 3.24e-51 | 5 |
cartilaginous condensation | 3.24e-51 | 5 |
cartilage element | 3.24e-51 | 5 |
post-cranial axial skeletal system | 3.24e-51 | 5 |
vertebral column | 3.24e-51 | 5 |
intervertebral disk | 3.24e-51 | 5 |
intervertebral joint | 3.24e-51 | 5 |
nucleus pulposus | 1.80e-38 | 3 |
axial mesoderm | 1.80e-38 | 3 |
notochord | 1.80e-38 | 3 |
chordamesoderm | 1.80e-38 | 3 |
articulation | 2.19e-32 | 8 |
skeletal joint | 2.19e-32 | 8 |
articular system | 2.19e-32 | 8 |
subdivision of skeletal system | 1.25e-16 | 16 |
annulus fibrosus | 1.78e-15 | 2 |
fibrocartilage | 1.78e-15 | 2 |
annulus fibrosus disci intervertebralis | 1.78e-15 | 2 |
head connective tissue | 2.74e-15 | 2 |
substantia propria of cornea | 2.74e-15 | 2 |
cartilage tissue | 8.99e-11 | 3 |
skeletal tissue | 8.99e-11 | 3 |
axial skeletal system | 4.38e-09 | 14 |
stroma | 2.61e-08 | 4 |
cornea | 2.61e-08 | 4 |
eye surface | 2.61e-08 | 4 |
optic eminence | 2.61e-08 | 4 |
corneal primordium | 2.61e-08 | 4 |
Ontology term | p-value | n |
---|---|---|
pleomorphic carcinoma | 7.48e-30 | 1 |