FFCP PHASE1:Hg19::chr2:20402306..20402318,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr2:20402306..20402318,-
|short_description=p@chr2:20402306..20402318,-
|description=CAGE_peak_at_chr2:20402306..20402318,-
|association_with_transcript=NA
|E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:20402306..20402318,- | |||
|coexpression_cluster_id=C572 | |||
|description=CAGE_peak_at_chr2:20402306..20402318,- | |||
|id=chr2:20402306..20402318,- | |||
|ontology_enrichment_celltype=CL:0000223!1.19e-15!59;CL:0002076!4.69e-15!43;CL:0000066!6.75e-14!254;CL:0002368!2.26e-11!13;CL:0002321!1.01e-08!248;CL:0002202!1.45e-08!9;CL:0002632!1.45e-08!9;CL:0000220!1.77e-08!246;CL:0000244!9.54e-08!4;CL:0000731!9.54e-08!4;CL:0002077!1.43e-07!33;CL:0002159!8.06e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0000244;6.56e-45;4!CL:0000731;6.56e-45;4!CL:0002328;2.72e-27;3!CL:0002202;1.98e-20;9!CL:0002632;1.98e-20;9!CL:0002368;2.27e-14;13!CL:0000575;3.02e-11;2!CL:0002076;3.39e-10;42!CL:0002231;4.52e-08;3!CL:0000307;6.34e-08;3!CL:0002623;6.34e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,3.10e-45,4;CL:0000731,3.10e-45,4;CL:0002328,1.39e-27,3;CL:0002202,1.73e-20,9;CL:0002632,1.73e-20,9;CL:0002368,2.08e-14,13;CL:0000223,3.03e-12,58;CL:0002076,5.90e-12,42;CL:0000575,3.70e-11,2;CL:0002231,4.52e-08,3;CL:0000068,7.76e-08,3;CL:0000069,7.76e-08,3;CL:0000307,7.76e-08,3;CL:0000377,7.76e-08,3;CL:0002623,8.29e-08,3;CL:0000066,2.35e-07,253 | |||
|ontology_enrichment_development_v019=CL:0000223;1.91e-09;58!CL:0000377;6.34e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!8.54e-13!169;UBERON:0000925!8.54e-13!169;UBERON:0006595!8.54e-13!169;UBERON:0005911!1.55e-08!82;UBERON:0001007!1.69e-08!155;UBERON:0001555!1.69e-08!155;UBERON:0007026!1.69e-08!155;UBERON:0007196!7.31e-08!14;UBERON:0001558!7.31e-08!14;UBERON:0000077!8.40e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;4.12e-36;5!UBERON:0005910;3.07e-30;6!UBERON:0004815;2.72e-27;3!UBERON:0002031;2.72e-27;3!UBERON:0002185;8.13e-17;5!UBERON:0000486;1.65e-15;12!UBERON:0007196;1.52e-12;15!UBERON:0001558;1.52e-12;15!UBERON:0000485;2.66e-12;7!UBERON:0005911;6.68e-12;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,2.26e-36,5;UBERON:0005910,1.86e-30,6;UBERON:0004815,1.39e-27,3;UBERON:0002031,1.39e-27,3;UBERON:0002185,5.45e-17,5;UBERON:0007196,1.41e-12,15;UBERON:0001558,1.41e-12,15;UBERON:0005911,1.04e-11,82;UBERON:0000485,7.08e-10,9;UBERON:0004119,1.45e-09,160;UBERON:0000925,1.45e-09,160;UBERON:0006595,1.45e-09,160;UBERON:0006554,3.63e-07,47;UBERON:0005157,3.75e-07,47;UBERON:0001008,5.05e-07,48 | |||
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| ||
|short_description=p@chr2:20402306..20402318,- | |||
}} | }} |
Latest revision as of 05:13, 29 July 2015
Short description: | p@chr2:20402306..20402318, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:20402306..20402318, - |
Coexpression cluster: | C572_Urothelial_Prostate_Keratinocyte_Corneal_Mammary_Bronchial_Gingival |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 3.10e-45 | 4 |
urothelial cell | 3.10e-45 | 4 |
bronchial epithelial cell | 1.39e-27 | 3 |
epithelial cell of tracheobronchial tree | 1.73e-20 | 9 |
epithelial cell of lower respiratory tract | 1.73e-20 | 9 |
respiratory epithelial cell | 2.08e-14 | 13 |
endodermal cell | 3.03e-12 | 58 |
endo-epithelial cell | 5.90e-12 | 42 |
corneal epithelial cell | 3.70e-11 | 2 |
epithelial cell of prostate | 4.52e-08 | 3 |
duct epithelial cell | 7.76e-08 | 3 |
branched duct epithelial cell | 7.76e-08 | 3 |
tracheal epithelial cell | 7.76e-08 | 3 |
tracheoblast | 7.76e-08 | 3 |
acinar cell of salivary gland | 8.29e-08 | 3 |
epithelial cell | 2.35e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
urothelium | 2.26e-36 | 5 |
transitional epithelium | 1.86e-30 | 6 |
lower respiratory tract epithelium | 1.39e-27 | 3 |
epithelium of bronchus | 1.39e-27 | 3 |
bronchus | 5.45e-17 | 5 |
tracheobronchial tree | 1.41e-12 | 15 |
lower respiratory tract | 1.41e-12 | 15 |
endo-epithelium | 1.04e-11 | 82 |
simple columnar epithelium | 7.08e-10 | 9 |
endoderm-derived structure | 1.45e-09 | 160 |
endoderm | 1.45e-09 | 160 |
presumptive endoderm | 1.45e-09 | 160 |
urinary system structure | 3.63e-07 | 47 |
epithelial fold | 3.75e-07 | 47 |
renal system | 5.05e-07 | 48 |