FFCP PHASE1:Hg19::chr4:103586748..103586768,-: Difference between revisions
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|id=chr4:103586748..103586768,-
|short_description=p@chr4:103586748..103586768,-
|description=CAGE_peak_at_chr4:103586748..103586768,-
|association_with_transcript=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr4:103586748..103586768,- | |||
|coexpression_cluster_id=C2265 | |||
|description=CAGE_peak_at_chr4:103586748..103586768,- | |||
|id=chr4:103586748..103586768,- | |||
|ontology_enrichment_celltype=CL:0002076!1.99e-32!43;CL:0000223!2.60e-24!59;CL:0002368!3.93e-24!13;CL:0000066!5.98e-18!254;CL:0002251!4.05e-14!21;CL:0002327!7.58e-14!4;CL:0002202!6.33e-13!9;CL:0002632!6.33e-13!9;CL:0002166!1.00e-11!3;CL:0002621!3.00e-11!3;CL:0002328!7.41e-11!3;CL:0002159!3.42e-09!13;CL:0000220!9.38e-08!246;CL:0002321!1.25e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0002166;8.12e-29;3!CL:0002621;1.30e-27;3!CL:0002076;5.60e-25;42!CL:0002368;3.24e-24;13!CL:0002327;3.89e-21;4!CL:0002159;2.17e-16;14!CL:0002328;8.87e-13;3!CL:0002251;3.02e-11;20!CL:0002202;1.95e-09;9!CL:0002632;1.95e-09;9!CL:0000622;5.04e-08;5!CL:0000154;7.98e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,5.88e-29,42;CL:0002166,7.40e-29,3;CL:0002621,1.42e-27,3;CL:0002368,2.28e-24,13;CL:0002327,5.30e-21,4;CL:0000223,1.87e-20,58;CL:0002159,2.43e-16,14;CL:0000066,2.64e-14,253;CL:0002328,6.97e-13,3;CL:0002251,3.05e-11,20;CL:0002202,1.78e-09,9;CL:0002632,1.78e-09,9;CL:0000622,5.61e-08,5;CL:0002321,1.31e-07,250;CL:0000154,8.72e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000223;4.04e-10;58 | |||
|ontology_enrichment_disease=DOID:1749!3.12e-17!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003729!2.30e-16!5;UBERON:0001911!7.58e-14!4;UBERON:0005333!7.58e-14!4;UBERON:0008425!7.58e-14!4;UBERON:0005311!7.58e-14!4;UBERON:0001004!1.67e-13!72;UBERON:0003343!2.38e-13!4;UBERON:0004785!2.38e-13!4;UBERON:0000166!2.12e-11!21;UBERON:0000161!2.89e-11!35;UBERON:0001949!3.00e-11!3;UBERON:0004815!7.41e-11!3;UBERON:0002031!7.41e-11!3;UBERON:0000076!3.72e-10!8;UBERON:0000165!4.58e-10!28;UBERON:0000930!4.58e-10!28;UBERON:0000344!2.85e-09!12;UBERON:0001708!7.03e-09!4;UBERON:0001704!7.03e-09!4;UBERON:0005153!1.13e-08!37;UBERON:0004119!2.81e-08!169;UBERON:0000925!2.81e-08!169;UBERON:0006595!2.81e-08!169;UBERON:0002185!3.09e-08!4;UBERON:0007196!4.75e-08!14;UBERON:0001558!4.75e-08!14;UBERON:0001444!2.39e-07!48;UBERON:0005157!7.91e-07!51 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;1.30e-27;3!UBERON:0001708;8.78e-22;4!UBERON:0008895;8.78e-22;4!UBERON:0001911;3.89e-21;4!UBERON:0011159;1.49e-17;5!UBERON:0004815;8.87e-13;3!UBERON:0002031;8.87e-13;3!UBERON:0000486;2.71e-12;12!UBERON:0003929;3.40e-12;7!UBERON:0000161;7.61e-12;19!UBERON:0000166;7.61e-12;19!UBERON:0003729;1.76e-11;13!UBERON:0003350;9.73e-11;8!UBERON:0001828;9.73e-11;8!UBERON:0004807;4.53e-10;22!UBERON:0011137;2.90e-08;11!UBERON:0010323;2.90e-08;11!UBERON:0002185;5.04e-08;5!UBERON:0000165;5.46e-08;28!UBERON:0001004;1.60e-07;65!UBERON:0000344;1.62e-07;20!UBERON:0010371;3.82e-07;31!UBERON:0005911;6.13e-07;36!UBERON:0002365;6.50e-07;31!UBERON:0002330;6.50e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,1.42e-27,3;UBERON:0001708,8.19e-22,4;UBERON:0008895,8.19e-22,4;UBERON:0001911,5.30e-21,4;UBERON:0005333,5.30e-21,4;UBERON:0008425,5.30e-21,4;UBERON:0005311,5.30e-21,4;UBERON:0011159,1.41e-17,5;UBERON:0010188,9.58e-15,6;UBERON:0002539,9.58e-15,6;UBERON:0008816,9.58e-15,6;UBERON:0001004,5.52e-13,74;UBERON:0004815,6.97e-13,3;UBERON:0002031,6.97e-13,3;UBERON:0003729,1.78e-11,13;UBERON:0000076,8.51e-11,8;UBERON:0003350,1.01e-10,8;UBERON:0001828,1.01e-10,8;UBERON:0000166,3.31e-10,22;UBERON:0000033,1.66e-09,56;UBERON:0003102,1.93e-09,99;UBERON:0000161,1.07e-08,36;UBERON:0000153,1.74e-08,62;UBERON:0007811,1.74e-08,62;UBERON:0005153,2.11e-08,37;UBERON:0010323,2.83e-08,11;UBERON:0002185,4.37e-08,5;UBERON:0004807,6.70e-08,28;UBERON:0000165,1.05e-07,29;UBERON:0000930,1.05e-07,29;UBERON:0000344,1.63e-07,20;UBERON:0004119,2.46e-07,160;UBERON:0000925,2.46e-07,160;UBERON:0006595,2.46e-07,160;UBERON:0002365,4.16e-07,31;UBERON:0002330,4.16e-07,31 | |||
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| ||
|short_description=p@chr4:103586748..103586768,- | |||
}} | }} |
Latest revision as of 00:32, 30 July 2015
Short description: | p@chr4:103586748..103586768, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:103586748..103586768, - |
Coexpression cluster: | C2265_Mallassezderived_astrocytoma_Prostate_malignant_oral_Gingival_Keratinocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 5.88e-29 | 42 |
epithelial cell of Malassez | 7.40e-29 | 3 |
gingival epithelial cell | 1.42e-27 | 3 |
respiratory epithelial cell | 2.28e-24 | 13 |
mammary gland epithelial cell | 5.30e-21 | 4 |
endodermal cell | 1.87e-20 | 58 |
general ecto-epithelial cell | 2.43e-16 | 14 |
epithelial cell | 2.64e-14 | 253 |
bronchial epithelial cell | 6.97e-13 | 3 |
epithelial cell of alimentary canal | 3.05e-11 | 20 |
epithelial cell of tracheobronchial tree | 1.78e-09 | 9 |
epithelial cell of lower respiratory tract | 1.78e-09 | 9 |
acinar cell | 5.61e-08 | 5 |
embryonic cell | 1.31e-07 | 250 |
protein secreting cell | 8.72e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 1.42e-27 | 3 |
jaw skeleton | 8.19e-22 | 4 |
splanchnocranium | 8.19e-22 | 4 |
mammary gland | 5.30e-21 | 4 |
mammary bud | 5.30e-21 | 4 |
mammary ridge | 5.30e-21 | 4 |
mammary placode | 5.30e-21 | 4 |
primary subdivision of cranial skeletal system | 1.41e-17 | 5 |
protuberance | 9.58e-15 | 6 |
pharyngeal arch | 9.58e-15 | 6 |
embryonic head | 9.58e-15 | 6 |
respiratory system | 5.52e-13 | 74 |
lower respiratory tract epithelium | 6.97e-13 | 3 |
epithelium of bronchus | 6.97e-13 | 3 |
mouth mucosa | 1.78e-11 | 13 |
external ectoderm | 8.51e-11 | 8 |
epithelium of mucosa | 1.01e-10 | 8 |
gingiva | 1.01e-10 | 8 |
oral opening | 3.31e-10 | 22 |
head | 1.66e-09 | 56 |
surface structure | 1.93e-09 | 99 |
orifice | 1.07e-08 | 36 |
anterior region of body | 1.74e-08 | 62 |
craniocervical region | 1.74e-08 | 62 |
epithelial bud | 2.11e-08 | 37 |
cranial skeletal system | 2.83e-08 | 11 |
bronchus | 4.37e-08 | 5 |
respiratory system epithelium | 6.70e-08 | 28 |
mouth | 1.05e-07 | 29 |
stomodeum | 1.05e-07 | 29 |
mucosa | 1.63e-07 | 20 |
endoderm-derived structure | 2.46e-07 | 160 |
endoderm | 2.46e-07 | 160 |
presumptive endoderm | 2.46e-07 | 160 |
exocrine gland | 4.16e-07 | 31 |
exocrine system | 4.16e-07 | 31 |