FFCP PHASE1:Hg19::chr4:7859553..7859554,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:7859553..7859554,+
|short_description=p@chr4:7859553..7859554,+
|description=CAGE_peak_at_chr4:7859553..7859554,+
|association_with_transcript=NA
|EntrezG...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr4:7859553..7859554,+ | |||
|description=CAGE_peak_at_chr4:7859553..7859554,+ | |||
|id=chr4:7859553..7859554,+ | |||
|ontology_enrichment_celltype=CL:0002057!5.63e-09!42;CL:0000860!4.34e-08!45;CL:0000898!1.38e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000898;1.06e-40;3!CL:0000815;1.49e-27;2!CL:0000792;1.49e-27;2!CL:0002677;1.49e-27;2!CL:0000624;9.84e-21;6!CL:0000895;5.42e-15;1!CL:0000342;1.72e-14;1!CL:0002565;1.72e-14;1!CL:0002591;1.72e-14;1!CL:0001014;6.80e-08;2!CL:0001016;6.80e-08;2!CL:0000791;2.70e-07;18!CL:0000789;2.70e-07;18!CL:0002419;2.70e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000898,7.60e-41,3;CL:0000815,1.07e-27,2;CL:0000792,1.07e-27,2;CL:0002677,1.07e-27,2;CL:0000624,8.33e-21,6;CL:0000810,5.42e-15,1;CL:0000895,5.42e-15,1;CL:0002436,5.42e-15,1;CL:0002427,5.42e-15,1;CL:0002428,5.42e-15,1;CL:0002429,5.42e-15,1;CL:0002433,5.42e-15,1;CL:0002431,5.42e-15,1;CL:0002432,5.42e-15,1;CL:0002591,2.11e-14,1;CL:0000342,3.15e-14,1;CL:0002565,3.15e-14,1;CL:0000893,3.82e-08,2;CL:0002489,3.82e-08,2;CL:0000809,3.82e-08,2;CL:0000808,3.82e-08,2;CL:0000894,3.82e-08,2;CL:0000806,3.82e-08,2;CL:0000807,3.82e-08,2;CL:0000805,3.82e-08,2;CL:0002425,3.82e-08,2;CL:0001014,5.37e-08,2;CL:0001016,5.37e-08,2;CL:0000791,2.56e-07,18;CL:0000789,2.56e-07,18;CL:0002420,2.56e-07,18;CL:0002419,2.56e-07,18;CL:0000790,2.56e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002427;5.42e-15;1!UBERON:0005425;1.72e-14;1!CL:0002425;3.81e-08;2!CL:0000790;2.70e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.72e-14;1!UBERON:0001785;1.72e-14;1!UBERON:0002464;1.72e-14;1!UBERON:0004904;1.72e-14;1!UBERON:0001021;1.72e-14;1!UBERON:0002506;1.72e-14;1!UBERON:0001769;1.72e-14;1!UBERON:0003714;6.80e-08;2!UBERON:0005162;6.80e-08;2!UBERON:0000122;6.80e-08;2!UBERON:0000078;6.80e-08;2!UBERON:0002012;6.80e-08;2!UBERON:0008886;6.80e-08;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,1.41e-14,1;UBERON:0001785,1.41e-14,1;UBERON:0002464,1.41e-14,1;UBERON:0004904,1.41e-14,1;UBERON:0001021,1.41e-14,1;UBERON:0003902,1.41e-14,1;UBERON:0005425,1.41e-14,1;UBERON:0002506,3.15e-14,1;UBERON:0001769,3.15e-14,1;UBERON:0003351,7.42e-10,6;UBERON:0003714,6.15e-08,2;UBERON:0005162,6.15e-08,2;UBERON:0000122,6.15e-08,2;UBERON:0000078,7.52e-08,2;UBERON:0007497,7.52e-08,2;UBERON:0003643,7.52e-08,2;UBERON:0003504,7.52e-08,2;UBERON:0003469,7.52e-08,2;UBERON:0003496,7.52e-08,2;UBERON:0002012,7.52e-08,2;UBERON:0008886,7.52e-08,2;UBERON:0007303,7.52e-08,2;UBERON:0002061,7.52e-08,2;UBERON:0005432,7.52e-08,2;UBERON:0004363,7.52e-08,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,1.20538905604795,0,0,0,0,0.313454721478088,0,0,0,0.0764134057479513,0,0,0,0,0.77408061658038,0,0,0,0.0774672005803016,0,0.880801318004542,0,0,0.217010870715852,0,0,0,0,0.377875943688809,0,0,0,0.309706370895104,0,0,0,0,0,4.06279459783025,0,0.272906150057846,0.224723484445085,0.612167784741805,0,0.639337125799041,0,0,0,0,0,0.622822248995575,0,0,0.434377689410233,0.605399502633369,0.368277635987565,0.632924774881769,0,0.212604299965044,0,0.112328631146495,0,0,0,0.79566670879636,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0,0,0,0.668745981562712,2.28145586643513,0.473447805734733,0,0.222820913770347,1.47302953737419,2.87994062958707,0,0.128091319725675,0.130059347559878,0,0,0,0,0.535081656179426,1.04535523804977,0.113309342697566,3.06576394881537,0,0.506039384039006,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0.132409180813219,0,0,1.12135520028461,0,0.24666754841716,0,0,0,0.151357427644931,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0.168584690078102,0.241011029883482,0,0,0,0.134831308160164,0,0.769494313892781,0,0,0,0,0,0,0,0,0,1.02940686179115,0,0,0,0,0.325808305310325,0,0,0.115930404975077,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.144119953416961,0,0,0,0,0,0,0,0.285826432630578,0,0,0,0,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.415941723061614,0.178428988797162,0.157702415033935,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,1.13008116620243,0,0,0,0,0,0,0.30982349809975,0,0,0.785992328104969,0,0,0,0.329294892959902,0.379473173765715,0,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0.185803175125719,0,0,0,0,0.191505370132367,0,0.649243880549111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.95497793895076,0,0,0.994147647766298,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0.113942055847001,0,0,0.108647371922008,0,0.0915975934018623,0,0,0,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0.19980960958213,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07720169014593,0.2249738915515,1.5476039091159,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72022758707021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41696576325585,0.159633859057151,0,0,0,0,1.42769420259154,0,0,0.183428598521679,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606965604236632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0.0771741581079447,0,0,0,0.235676547101626,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,1.20538905604795,0,0,0,0,0.313454721478088,0,0,0,0.0764134057479513,0,0,0,0,0.77408061658038,0,0,0,0.0774672005803016,0,0.880801318004542,0,0,0.217010870715852,0,0,0,0,0.377875943688809,0,0,0,0.309706370895104,0,0,0,0,0,4.06279459783025,0,0.272906150057846,0.224723484445085,0.612167784741805,0,0.639337125799041,0,0,0,0,0,0.622822248995575,0,0,0.434377689410233,0.605399502633369,0.368277635987565,0.632924774881769,0,0.212604299965044,0,0.112328631146495,0,0,0,0.79566670879636,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0,0,0,0.668745981562712,2.28145586643513,0.473447805734733,0,0.222820913770347,1.47302953737419,2.87994062958707,0,0.128091319725675,0.130059347559878,0,0,0,0,0.535081656179426,1.04535523804977,0.113309342697566,3.06576394881537,0,0.506039384039006,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0.132409180813219,0,0,1.12135520028461,0,0.24666754841716,0,0,0,0.151357427644931,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0.168584690078102,0.241011029883482,0,0,0,0.134831308160164,0,0.769494313892781,0,0,0,0,0,0,0,0,0,1.02940686179115,0,0,0,0,0.325808305310325,0,0,0.115930404975077,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0.144119953416961,0,0,0,0,0,0,0,0.285826432630578,0,0,0,0,0,0.845302752556,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.415941723061614,0.178428988797162,0.157702415033935,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574265537996172,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,1.13008116620243,0,0,0,0,0,0,0.30982349809975,0,0,0.785992328104969,0,0,0,0.329294892959902,0.379473173765715,0,0,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0.185803175125719,0,0,0,0,0.191505370132367,0,0.649243880549111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.95497793895076,0,0,0.994147647766298,0,0,0,0,0,0,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0.113942055847001,0,0,0.108647371922008,0,0.0915975934018623,0,0,0,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182454789215666,0,0,0,0,0,0,0,0,0,0.330991955875499,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0.19980960958213,0,0,0,0,0.124252535565433,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07720169014593,0.2249738915515,1.5476039091159,0,0.335434687599266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72022758707021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41696576325585,0.159633859057151,0,0,0,0,1.42769420259154,0,0,0.183428598521679,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606965604236632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0.0771741581079447,0,0,0,0.235676547101626,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr4:7859553..7859554,+ | |||
}} | }} |
Latest revision as of 07:05, 30 July 2015
Short description: | p@chr4:7859553..7859554, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:7859553..7859554, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 1.41e-14 | 1 |
cranial nerve | 1.41e-14 | 1 |
nerve trunk | 1.41e-14 | 1 |
nerve connecting eye with brain | 1.41e-14 | 1 |
nerve | 1.41e-14 | 1 |
retinal neural layer | 1.41e-14 | 1 |
presumptive neural retina | 1.41e-14 | 1 |
iris epithelium | 3.15e-14 | 1 |
iris | 3.15e-14 | 1 |
pharyngeal epithelium | 7.42e-10 | 6 |
neural tissue | 6.15e-08 | 2 |
multi cell component structure | 6.15e-08 | 2 |
neuron projection bundle | 6.15e-08 | 2 |
mixed ectoderm/mesoderm/endoderm-derived structure | 7.52e-08 | 2 |
developing epithelial placode | 7.52e-08 | 2 |
respiratory system arterial blood vessel | 7.52e-08 | 2 |
respiratory system blood vessel | 7.52e-08 | 2 |
respiratory system artery | 7.52e-08 | 2 |
head blood vessel | 7.52e-08 | 2 |
pulmonary artery | 7.52e-08 | 2 |
pulmonary vascular system | 7.52e-08 | 2 |
pharyngeal vasculature | 7.52e-08 | 2 |
truncus arteriosus | 7.52e-08 | 2 |
aortic sac | 7.52e-08 | 2 |
pharyngeal arch artery | 7.52e-08 | 2 |