FFCP PHASE1:Hg19::chrX:73834316..73834343,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:73834316..73834343,-
|short_description=p3@RLIM
|description=CAGE_peak_3_at_RLIM_5end
|association_with_transcript=108bp_to_ENST00000332687,ENST00000349225...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51132 | |EntrezGene=51132 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13429 | |HGNC=13429 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NVW2 | |UniProt=Q9NVW2 | ||
|association_with_transcript=108bp_to_ENST00000332687,ENST00000349225_5end | |||
|cluster_id=chrX:73834316..73834343,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_3_at_RLIM_5end | |||
|id=chrX:73834316..73834343,- | |||
|ontology_enrichment_celltype=CL:0000738!3.47e-26!140;CL:0000037!2.67e-23!172;CL:0000566!2.67e-23!172;CL:0002032!6.67e-21!165;CL:0000837!6.67e-21!165;CL:0002031!4.84e-20!124;CL:0000988!7.55e-20!182;CL:0000766!1.09e-19!76;CL:0002057!8.69e-19!42;CL:0000860!3.01e-18!45;CL:0002087!3.34e-18!119;CL:0000557!5.77e-17!71;CL:0000763!8.77e-16!112;CL:0000049!8.77e-16!112;CL:0000839!4.25e-15!70;CL:0002009!7.02e-14!65;CL:0002194!7.63e-13!63;CL:0000576!7.63e-13!63;CL:0000040!7.63e-13!63;CL:0000559!7.63e-13!63 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.78e-22;33!CL:0002057;2.78e-22;33!CL:0000473;5.37e-15;39!CL:0000234;5.37e-15;39!CL:0000576;1.36e-13;48!CL:0000766;1.49e-11;69!CL:0000094;1.95e-08;8!CL:0002087;3.18e-08;104!CL:0000763;8.10e-08;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,4.65e-29,136;CL:0000037,9.33e-28,168;CL:0000988,3.09e-25,177;CL:0002032,1.13e-24,161;CL:0000837,1.13e-24,161;CL:0000766,1.51e-24,72;CL:0000860,1.76e-24,42;CL:0002057,1.76e-24,42;CL:0002031,6.02e-22,120;CL:0000557,8.94e-21,67;CL:0000763,1.08e-20,108;CL:0000049,1.08e-20,108;CL:0000473,1.75e-20,48;CL:0000234,1.75e-20,48;CL:0002087,1.78e-19,115;CL:0000839,2.65e-18,66;CL:0002009,1.59e-16,61;CL:0002194,4.16e-15,59;CL:0000576,4.16e-15,59;CL:0000040,4.16e-15,59;CL:0000559,4.16e-15,59;CL:0000094,1.92e-08,8;CL:0000134,6.46e-08,354;CL:0002320,3.92e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;3.56e-18;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.58e-16!102;UBERON:0003061!1.58e-16!102;UBERON:0002193!1.14e-14!112;UBERON:0002371!2.24e-14!80;UBERON:0001474!1.40e-12!86;UBERON:0007023!1.11e-11!115;UBERON:0004765!3.32e-11!101;UBERON:0001434!3.32e-11!101;UBERON:0002780!2.10e-09!41;UBERON:0001890!2.10e-09!41;UBERON:0006240!2.10e-09!41;UBERON:0003080!2.38e-09!42;UBERON:0002020!3.36e-09!34;UBERON:0003528!3.36e-09!34;UBERON:0001893!6.31e-09!34;UBERON:0001049!6.54e-09!57;UBERON:0005068!6.54e-09!57;UBERON:0006241!6.54e-09!57;UBERON:0007135!6.54e-09!57;UBERON:0001869!1.05e-08!32;UBERON:0002791!1.22e-08!33;UBERON:0002405!2.12e-08!115;UBERON:0002616!2.21e-07!59;UBERON:0002619!2.84e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;1.07e-07;34!UBERON:0002020;1.07e-07;34!UBERON:0002791;1.55e-07;32!UBERON:0001893;1.93e-07;34!UBERON:0001869;2.35e-07;32!UBERON:0002780;2.42e-07;41!UBERON:0001890;2.42e-07;41!UBERON:0002619;6.90e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.55e-19,98;UBERON:0003061,2.55e-19,98;UBERON:0002371,8.45e-18,76;UBERON:0002193,1.05e-16,108;UBERON:0001474,4.20e-15,82;UBERON:0004765,1.61e-13,90;UBERON:0002405,1.88e-13,93;UBERON:0001434,1.82e-12,100;UBERON:0003081,3.11e-12,203;UBERON:0001049,1.92e-10,56;UBERON:0005068,1.92e-10,56;UBERON:0006241,1.92e-10,56;UBERON:0007135,1.92e-10,56;UBERON:0002780,8.53e-10,41;UBERON:0001890,8.53e-10,41;UBERON:0003080,8.53e-10,41;UBERON:0006240,8.53e-10,41;UBERON:0000073,1.01e-09,53;UBERON:0002616,1.01e-09,53;UBERON:0007023,2.74e-09,114;UBERON:0003528,2.80e-09,34;UBERON:0002020,2.80e-09,34;UBERON:0001893,5.96e-09,34;UBERON:0001869,1.32e-08,32;UBERON:0002791,2.40e-08,32;UBERON:0002384,1.20e-07,371;UBERON:0002619,4.23e-07,22;UBERON:0002346,6.05e-07,86 | |||
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| ||
|short_description=p3@RLIM | |||
}} | }} |
Latest revision as of 10:51, 16 September 2015
Short description: | p3@RLIM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RLIM_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 108bp_to_ENST00000332687, ENST00000349225_5end |
EntrezGene: | RLIM |
HGNC: | 13429 |
UniProt: | Q9NVW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 4.65e-29 | 136 |
hematopoietic stem cell | 9.33e-28 | 168 |
hematopoietic cell | 3.09e-25 | 177 |
hematopoietic oligopotent progenitor cell | 1.13e-24 | 161 |
hematopoietic multipotent progenitor cell | 1.13e-24 | 161 |
myeloid leukocyte | 1.51e-24 | 72 |
classical monocyte | 1.76e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.76e-24 | 42 |
hematopoietic lineage restricted progenitor cell | 6.02e-22 | 120 |
granulocyte monocyte progenitor cell | 8.94e-21 | 67 |
myeloid cell | 1.08e-20 | 108 |
common myeloid progenitor | 1.08e-20 | 108 |
defensive cell | 1.75e-20 | 48 |
phagocyte | 1.75e-20 | 48 |
nongranular leukocyte | 1.78e-19 | 115 |
myeloid lineage restricted progenitor cell | 2.65e-18 | 66 |
macrophage dendritic cell progenitor | 1.59e-16 | 61 |
monopoietic cell | 4.16e-15 | 59 |
monocyte | 4.16e-15 | 59 |
monoblast | 4.16e-15 | 59 |
promonocyte | 4.16e-15 | 59 |
granulocyte | 1.92e-08 | 8 |
mesenchymal cell | 6.46e-08 | 354 |
connective tissue cell | 3.92e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.55e-19 | 98 |
blood island | 2.55e-19 | 98 |
bone marrow | 8.45e-18 | 76 |
hemolymphoid system | 1.05e-16 | 108 |
bone element | 4.20e-15 | 82 |
skeletal element | 1.61e-13 | 90 |
immune system | 1.88e-13 | 93 |
skeletal system | 1.82e-12 | 100 |
lateral plate mesoderm | 3.11e-12 | 203 |
neural tube | 1.92e-10 | 56 |
neural rod | 1.92e-10 | 56 |
future spinal cord | 1.92e-10 | 56 |
neural keel | 1.92e-10 | 56 |
regional part of forebrain | 8.53e-10 | 41 |
forebrain | 8.53e-10 | 41 |
anterior neural tube | 8.53e-10 | 41 |
future forebrain | 8.53e-10 | 41 |
regional part of nervous system | 1.01e-09 | 53 |
regional part of brain | 1.01e-09 | 53 |
adult organism | 2.74e-09 | 114 |
brain grey matter | 2.80e-09 | 34 |
gray matter | 2.80e-09 | 34 |
telencephalon | 5.96e-09 | 34 |
cerebral hemisphere | 1.32e-08 | 32 |
regional part of telencephalon | 2.40e-08 | 32 |
connective tissue | 1.20e-07 | 371 |
regional part of cerebral cortex | 4.23e-07 | 22 |
neurectoderm | 6.05e-07 | 86 |