FFCP PHASE1:Hg19::chr1:12538594..12538614,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55187 | |EntrezGene=55187 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=23595 | |HGNC=23595 | ||
|TSSclassifier=strong | |||
|UniProt=F5GZY2 | |UniProt=F5GZY2 | ||
|association_with_transcript=0bp_to_ENST00000543710_5end | |association_with_transcript=0bp_to_ENST00000543710_5end | ||
|cluster_id=chr1:12538594..12538614,+ | |||
|description=CAGE_peak_5_at_VPS13D_5end | |description=CAGE_peak_5_at_VPS13D_5end | ||
|id=chr1:12538594..12538614,+ | |id=chr1:12538594..12538614,+ | ||
|ontology_enrichment_celltype=CL:0000183!1.67e-14!59;CL:0000187!1.30e-13!54;CL:0000680!2.84e-12!57;CL:0000056!2.84e-12!57;CL:0000355!2.84e-12!57;CL:0000222!1.88e-11!119;CL:0000192!3.61e-11!42;CL:0000514!3.61e-11!42;CL:0000393!4.36e-11!60;CL:0000211!4.36e-11!60;CL:0000359!5.07e-11!32;CL:1000507!2.17e-09!12;CL:1000494!2.17e-09!12;CL:1000449!2.00e-07!16;CL:0000220!7.01e-07!246 | |ontology_enrichment_celltype=CL:0000183!1.67e-14!59;CL:0000187!1.30e-13!54;CL:0000680!2.84e-12!57;CL:0000056!2.84e-12!57;CL:0000355!2.84e-12!57;CL:0000222!1.88e-11!119;CL:0000192!3.61e-11!42;CL:0000514!3.61e-11!42;CL:0000393!4.36e-11!60;CL:0000211!4.36e-11!60;CL:0000359!5.07e-11!32;CL:1000507!2.17e-09!12;CL:1000494!2.17e-09!12;CL:1000449!2.00e-07!16;CL:0000220!7.01e-07!246 | ||
|ontology_enrichment_celltype_v019=CL:1000507;1.07e-14;10!CL:1000494;1.07e-14;10!CL:1000449;2.69e-09;15!CL:0000064;2.33e-08;3!CL:0000067;2.33e-08;3!CL:0005012;2.33e-08;3!CL:0002304;2.33e-08;3!CL:0000239;4.31e-08;3!CL:1000615;4.31e-08;3!CL:0002306;4.31e-08;3!CL:1000497;4.95e-08;17!CL:0002518;4.95e-08;17!CL:0002681;6.92e-07;12!CL:0002584;6.92e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,1.76e-14,10;CL:1000494,1.76e-14,10;CL:1000449,3.68e-09,15;CL:0000064,2.23e-08,3;CL:0000067,2.23e-08,3;CL:0005012,2.23e-08,3;CL:0002304,2.23e-08,3;CL:1000497,6.49e-08,17;CL:0002518,6.49e-08,17;CL:0000239,7.03e-08,3;CL:1000615,7.03e-08,3;CL:0002306,7.03e-08,3;CL:0000066,1.09e-07,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003064!7.36e-13!37;UBERON:0005256!2.08e-12!143;UBERON:0007625!2.88e-11!11;UBERON:0000058!7.47e-11!26;UBERON:0001134!1.01e-10!61;UBERON:0002036!1.01e-10!61;UBERON:0003082!1.01e-10!61;UBERON:0002385!1.02e-10!63;UBERON:0001015!1.02e-10!63;UBERON:0000383!1.02e-10!63;UBERON:0001008!7.01e-10!45;UBERON:0002100!1.21e-09!216;UBERON:0000119!1.43e-09!312;UBERON:0009773!2.17e-09!12;UBERON:0001231!2.17e-09!12;UBERON:0004810!2.17e-09!12;UBERON:0000481!2.30e-09!347;UBERON:0001637!3.00e-09!42;UBERON:0003509!3.00e-09!42;UBERON:0004572!3.00e-09!42;UBERON:0006554!3.10e-09!44;UBERON:0003914!3.51e-09!118;UBERON:0000483!4.13e-09!309;UBERON:0000490!5.04e-09!138;UBERON:0000080!1.35e-08!18;UBERON:0002120!1.35e-08!18;UBERON:0004875!1.35e-08!18;UBERON:0005721!1.35e-08!18;UBERON:0005754!1.35e-08!18;UBERON:0007297!1.35e-08!18;UBERON:0003104!1.75e-08!238;UBERON:0009142!1.75e-08!238;UBERON:0005156!2.01e-08!59;UBERON:0000990!2.01e-08!59;UBERON:0000486!4.01e-08!82;UBERON:0000162!4.29e-08!14;UBERON:0001353!4.29e-08!14;UBERON:0000163!4.29e-08!14;UBERON:0006866!4.29e-08!14;UBERON:0000164!4.29e-08!14;UBERON:0000931!4.29e-08!14;UBERON:0006555!4.48e-08!17;UBERON:0005103!4.48e-08!17;UBERON:0000083!4.48e-08!17;UBERON:0009201!4.48e-08!17;UBERON:0004819!4.48e-08!17;UBERON:0006553!4.48e-08!17;UBERON:0003074!4.48e-08!17;UBERON:0003060!4.48e-08!17;UBERON:0004290!5.66e-08!70;UBERON:0004573!1.22e-07!33;UBERON:0004571!1.22e-07!33;UBERON:0004211!2.00e-07!16;UBERON:0001285!2.00e-07!16;UBERON:0007684!2.00e-07!16;UBERON:0003220!2.00e-07!16;UBERON:0004208!2.00e-07!16;UBERON:0000970!2.01e-07!20;UBERON:0001046!2.49e-07!19;UBERON:0004122!2.56e-07!15;UBERON:0000477!2.61e-07!286;UBERON:0004876!2.68e-07!20;UBERON:0000020!4.74e-07!23;UBERON:0004111!4.80e-07!241;UBERON:0000019!6.55e-07!19;UBERON:0000047!6.55e-07!19;UBERON:0004088!6.55e-07!19;UBERON:0003072!6.55e-07!19;UBERON:0003071!6.55e-07!19;UBERON:0004128!6.55e-07!19;UBERON:0002104!7.26e-07!21;UBERON:0000489!8.56e-07!32;UBERON:0003887!9.50e-07!21 | |ontology_enrichment_uberon=UBERON:0003064!7.36e-13!37;UBERON:0005256!2.08e-12!143;UBERON:0007625!2.88e-11!11;UBERON:0000058!7.47e-11!26;UBERON:0001134!1.01e-10!61;UBERON:0002036!1.01e-10!61;UBERON:0003082!1.01e-10!61;UBERON:0002385!1.02e-10!63;UBERON:0001015!1.02e-10!63;UBERON:0000383!1.02e-10!63;UBERON:0001008!7.01e-10!45;UBERON:0002100!1.21e-09!216;UBERON:0000119!1.43e-09!312;UBERON:0009773!2.17e-09!12;UBERON:0001231!2.17e-09!12;UBERON:0004810!2.17e-09!12;UBERON:0000481!2.30e-09!347;UBERON:0001637!3.00e-09!42;UBERON:0003509!3.00e-09!42;UBERON:0004572!3.00e-09!42;UBERON:0006554!3.10e-09!44;UBERON:0003914!3.51e-09!118;UBERON:0000483!4.13e-09!309;UBERON:0000490!5.04e-09!138;UBERON:0000080!1.35e-08!18;UBERON:0002120!1.35e-08!18;UBERON:0004875!1.35e-08!18;UBERON:0005721!1.35e-08!18;UBERON:0005754!1.35e-08!18;UBERON:0007297!1.35e-08!18;UBERON:0003104!1.75e-08!238;UBERON:0009142!1.75e-08!238;UBERON:0005156!2.01e-08!59;UBERON:0000990!2.01e-08!59;UBERON:0000486!4.01e-08!82;UBERON:0000162!4.29e-08!14;UBERON:0001353!4.29e-08!14;UBERON:0000163!4.29e-08!14;UBERON:0006866!4.29e-08!14;UBERON:0000164!4.29e-08!14;UBERON:0000931!4.29e-08!14;UBERON:0006555!4.48e-08!17;UBERON:0005103!4.48e-08!17;UBERON:0000083!4.48e-08!17;UBERON:0009201!4.48e-08!17;UBERON:0004819!4.48e-08!17;UBERON:0006553!4.48e-08!17;UBERON:0003074!4.48e-08!17;UBERON:0003060!4.48e-08!17;UBERON:0004290!5.66e-08!70;UBERON:0004573!1.22e-07!33;UBERON:0004571!1.22e-07!33;UBERON:0004211!2.00e-07!16;UBERON:0001285!2.00e-07!16;UBERON:0007684!2.00e-07!16;UBERON:0003220!2.00e-07!16;UBERON:0004208!2.00e-07!16;UBERON:0000970!2.01e-07!20;UBERON:0001046!2.49e-07!19;UBERON:0004122!2.56e-07!15;UBERON:0000477!2.61e-07!286;UBERON:0004876!2.68e-07!20;UBERON:0000020!4.74e-07!23;UBERON:0004111!4.80e-07!241;UBERON:0000019!6.55e-07!19;UBERON:0000047!6.55e-07!19;UBERON:0004088!6.55e-07!19;UBERON:0003072!6.55e-07!19;UBERON:0003071!6.55e-07!19;UBERON:0004128!6.55e-07!19;UBERON:0002104!7.26e-07!21;UBERON:0000489!8.56e-07!32;UBERON:0003887!9.50e-07!21 | ||
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| ||
|short_description=p5@VPS13D | |short_description=p5@VPS13D | ||
}} | }} |
Latest revision as of 14:10, 16 September 2015
Short description: | p5@VPS13D |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_VPS13D_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000543710_5end |
EntrezGene: | VPS13D |
HGNC: | 23595 |
UniProt: | F5GZY2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 1.76e-14 | 10 |
nephron tubule epithelial cell | 1.76e-14 | 10 |
epithelial cell of nephron | 3.68e-09 | 15 |
ciliated cell | 2.23e-08 | 3 |
ciliated epithelial cell | 2.23e-08 | 3 |
multi-ciliated epithelial cell | 2.23e-08 | 3 |
non-pigmented ciliary epithelial cell | 2.23e-08 | 3 |
kidney cell | 6.49e-08 | 17 |
kidney epithelial cell | 6.49e-08 | 17 |
brush border epithelial cell | 7.03e-08 | 3 |
kidney cortex tubule cell | 7.03e-08 | 3 |
epithelial cell of proximal tubule | 7.03e-08 | 3 |
epithelial cell | 1.09e-07 | 253 |