FFCP PHASE1:Hg19::chr1:28503135..28503157,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:28503135..28503157,- to FFCP PHASE1:Hg19::chr1:28503135..28503157,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5724 | |EntrezGene=5724 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=9582 | |HGNC=9582 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=33bp_to_uc001bpl.2_5end | |||
|cluster_id=chr1:28503135..28503157,- | |||
|coexpression_cluster_id=C26 | |||
|description=CAGE_peak_2_at_PTAFR_5end | |||
|id=chr1:28503135..28503157,- | |||
|ontology_enrichment_celltype=CL:0000738!6.04e-54!140;CL:0000037!6.05e-54!172;CL:0000566!6.05e-54!172;CL:0000766!4.40e-52!76;CL:0002032!5.70e-51!165;CL:0000837!5.70e-51!165;CL:0000988!3.08e-48!182;CL:0002087!1.36e-46!119;CL:0002031!2.05e-46!124;CL:0000839!1.16e-44!70;CL:0000763!2.66e-44!112;CL:0000049!2.66e-44!112;CL:0000557!1.07e-43!71;CL:0002194!3.59e-42!63;CL:0000576!3.59e-42!63;CL:0000040!3.59e-42!63;CL:0000559!3.59e-42!63;CL:0002009!3.24e-41!65;CL:0002057!9.08e-38!42;CL:0000860!4.77e-35!45;CL:0000945!2.45e-10!24;CL:0000826!2.45e-10!24;CL:0000094!7.51e-09!8;CL:0002393!4.84e-08!9;CL:0002397!4.84e-08!9;CL:0000134!1.32e-07!358;CL:0000542!2.02e-07!53;CL:0000051!2.02e-07!53;CL:0000838!3.79e-07!52;CL:0002320!7.38e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.71e-33;33!CL:0002057;4.71e-33;33!CL:0000473;2.23e-32;39!CL:0000234;2.23e-32;39!CL:0000576;7.94e-28;48!CL:0000766;1.39e-24;69!CL:0002087;6.09e-14;104!CL:0000763;1.42e-13;100!CL:0000738;1.26e-12;136!CL:0000094;3.78e-10;8!CL:0000945;4.16e-09;24!CL:0000988;6.69e-08;177!CL:0000235;4.60e-07;6!CL:0002393;6.56e-07;6!CL:0002397;6.56e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.23e-60,72;CL:0000738,6.20e-55,136;CL:0000473,5.15e-50,48;CL:0000234,5.15e-50,48;CL:0002194,8.56e-50,59;CL:0000576,8.56e-50,59;CL:0000040,8.56e-50,59;CL:0000559,8.56e-50,59;CL:0000557,5.03e-49,67;CL:0002087,6.46e-49,115;CL:0000839,1.10e-48,66;CL:0000037,1.64e-48,168;CL:0002009,2.03e-47,61;CL:0002032,4.90e-46,161;CL:0000837,4.90e-46,161;CL:0002031,5.17e-45,120;CL:0000860,3.33e-44,42;CL:0002057,3.33e-44,42;CL:0000988,4.41e-44,177;CL:0000763,3.51e-42,108;CL:0000049,3.51e-42,108;CL:0000094,3.87e-10,8;CL:0000945,2.95e-09,24;CL:0000826,2.95e-09,24;CL:0002393,3.46e-09,9;CL:0002397,3.46e-09,9;CL:0000134,2.03e-07,354;CL:0000235,4.59e-07,6;CL:0002320,8.84e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;6.74e-32;42!CL:0000049;2.89e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.16e-44!102;UBERON:0003061!1.16e-44!102;UBERON:0007023!2.34e-42!115;UBERON:0002193!3.30e-40!112;UBERON:0002371!1.04e-36!80;UBERON:0001474!3.37e-32!86;UBERON:0002405!3.75e-27!115;UBERON:0004765!8.56e-26!101;UBERON:0001434!8.56e-26!101;UBERON:0001049!1.64e-14!57;UBERON:0005068!1.64e-14!57;UBERON:0006241!1.64e-14!57;UBERON:0007135!1.64e-14!57;UBERON:0003081!2.77e-12!216;UBERON:0003080!3.12e-11!42;UBERON:0002780!6.44e-11!41;UBERON:0001890!6.44e-11!41;UBERON:0006240!6.44e-11!41;UBERON:0002616!7.08e-11!59;UBERON:0002204!7.51e-10!167;UBERON:0001893!8.04e-10!34;UBERON:0000955!8.63e-10!69;UBERON:0006238!8.63e-10!69;UBERON:0002020!1.05e-09!34;UBERON:0003528!1.05e-09!34;UBERON:0001017!1.10e-09!82;UBERON:0002791!2.06e-09!33;UBERON:0005743!3.64e-09!86;UBERON:0000479!3.80e-09!787;UBERON:0001869!9.58e-09!32;UBERON:0000178!2.14e-08!15;UBERON:0000179!2.14e-08!15;UBERON:0000463!2.14e-08!15;UBERON:0003075!1.25e-07!86;UBERON:0007284!1.25e-07!86;UBERON:0002619!1.36e-07!22;UBERON:0000073!1.77e-07!94;UBERON:0001016!1.77e-07!94;UBERON:0002346!9.58e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.36e-10;15!UBERON:0000179;6.36e-10;15!UBERON:0000463;6.36e-10;15!UBERON:0007023;1.32e-08;114!UBERON:0002780;1.49e-07;41!UBERON:0001890;1.49e-07;41!UBERON:0001893;2.10e-07;34!UBERON:0003528;5.22e-07;34!UBERON:0002020;5.22e-07;34!UBERON:0002791;6.45e-07;32!UBERON:0001869;8.33e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.66e-51,98;UBERON:0003061,1.66e-51,98;UBERON:0002193,6.28e-47,108;UBERON:0002371,1.35e-41,76;UBERON:0002405,1.55e-37,93;UBERON:0001474,8.28e-37,82;UBERON:0007023,6.47e-33,114;UBERON:0004765,1.87e-31,90;UBERON:0001434,4.82e-27,100;UBERON:0003081,1.02e-15,203;UBERON:0001049,1.44e-11,56;UBERON:0005068,1.44e-11,56;UBERON:0006241,1.44e-11,56;UBERON:0007135,1.44e-11,56;UBERON:0002204,2.92e-10,167;UBERON:0000073,4.48e-10,53;UBERON:0002616,4.48e-10,53;UBERON:0000178,6.32e-10,15;UBERON:0000179,6.32e-10,15;UBERON:0000463,6.32e-10,15;UBERON:0002780,1.48e-09,41;UBERON:0001890,1.48e-09,41;UBERON:0003080,1.48e-09,41;UBERON:0006240,1.48e-09,41;UBERON:0001893,8.94e-09,34;UBERON:0000479,9.85e-09,773;UBERON:0003528,1.18e-08,34;UBERON:0002020,1.18e-08,34;UBERON:0002791,9.44e-08,32;UBERON:0001869,1.27e-07,32;UBERON:0001017,1.40e-07,81;UBERON:0000955,1.45e-07,68;UBERON:0006238,1.45e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34465029290355,0,0,0,0.123121058076788,0,0,0,0,0,27.3559992577666,21.181952078086,22.9835481435943,92.8339693363413,57.1905803164847,63.0101621896429,0,0,0,0.309868802321207,15.2121078761541,1.17440175733939,57.6155224873153,62.1687787157439,68.792446016925,76.5790921900541,71.2566065241755,67.2272231525227,147.143017644919,111.473403388199,163.016489118212,183.154081081679,106.903650885675,156.401717302027,251.443150889559,224.652939626021,268.170848693656,97.9077733291997,91.0133403853195,90.735746018209,136.287453828846,84.0550942178165,122.474299022571,82.0304831554019,70.6043859567406,80.5564778506792,291.588549365057,273.863601914501,317.111214396324,200.82479313098,197.450058192517,280.892834297004,183.411525637423,188.776816468113,245.423394516782,136.820287595141,202.920977429148,265.828405450343,23.0268262080017,21.0478256965393,31.0294795352396,58.5232168273239,64.1255332433232,66.7011184792883,20.2359048056286,5.37075028437543,18.449079530228,1.75996244461323,2.73069305631066,0.889509253863555,5.9742231159311,5.60554381850417,2.29900975981793,4.62731410949403,2.86216126360609,2.27685187643779,2.34894875748376,1.91136614062614,1.32171328579026,10.0891541336676,1.05353633910031,0.196709770113833,0,0.822405995998037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.86708872891687,0,0,4.81840381048873,2.55973222308837,7.49584359314075,10.1814218378927,3.28451198768419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.04269440666194,0,0,44.7875403243463,40.0498395788315,30.4473729588201,3.81584998888547,2.85997455390064,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,280.692289138815,426.558290563158,0,0,0,0,0,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0.982827216677626,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,71.4029317653452,44.6948146415944,59.4524649154913,0,0.16798212819886,0,0,0,0,0.492663237895943,9.77337617546809,1.65862492432618,2.88239906833923,2.77733353538036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,43.7845610308286,54.2437658746697,67.4668606345701,0,0,0,0,0,0,0,2.56139988262505,0.215627574859517,2.69520376187472,0,0,0,0.335032530668698,0,286.869690171771,224.371094403019,314.955790211387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.263266560043,29.7685597129691,20.4916910982613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.877039506583738,0.522870902049801,0,0,0,4.53380451249978,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,1.239293992399,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,5.64862804660675,0,0,0,0,185.218377369742,207.981320342726,190.26216051617,159.138826005803,148.09041831103,232.153445406993,184.150720098197,161.004410787737,0,0,0,1.48642540100575,0,0,0,0.199579371432817,7.27720406502993,0.635020748171649,0,0.842391534340376,0.912938716132769,0,0,0.169291777801603,12.5258698580886,13.9241797961823,10.2203097045678,4.46556948182494,0.307240764308458,0.223676107892416,0.333698283423817,12.5048381057306,0,0,0.540911356951966,0,0,0,5.71381899160387,0,0.111443384277478,0,0,0.890894042497916,0,0.994147647766298,5.06409899077846,0,0,0,1.9924798825107,6.90709788827869,0,0,9.35444521504128,0,0,0,0,0.690503839458535,40.7121256989798,0,7.75466196876175,3.4324196319885,3.99227596002388,0,0,1.44999915086959,0,0,0,0,0,0,1.77148277162768,2.53252521113357,0,0.884634079449797,0.591095237907095,1.09692698576986,0,0,1.38510465306835,0,0,0,0,1.5950057986596,0.0915975934018623,2.13213910407454,0,1.09886179476517,1.66211681900156,0,0,0,0,0.635746315921515,0,0,0,0,2.98578579323551,1.68069372556344,0,0,0,0,9.23395521835275,0,4.68528891450678,5.65609846568565,0,0,0,2.41981432097328,0.30607276163049,8.65656140910285,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,2.09672001890436,0,0.0967563312890851,0,0,1.55182426381471,0,0.451961481561065,0,0,2.78567502205866,0,0,2.34798294213288,0,0,0,0,0,0,0,0,0,0.101998217636322,0,3.00210144354895,8.62503887019556,1.27746588066972,0,0,0.279282401272254,0.458320848023367,0,0.998395002494955,1.28767814440971,2.4548860318606,1.47803639470798,0,0,0,0,0,0,10.3301465120257,4.77137813885582,5.85674646279775,0,0,0,0.449947783103001,0,3.21972650287531,0,1.57611414598396,1.10154635083496,0,0,0,2.85878130549347,4.63464379255802,0,0,0,0,0,0,0,0,2.05173127149315,7.95041333473328,1.68067843270016,5.55376927319298,0,0,12.2805524452849,3.14408610199332,15.3268450478462,16.8696447416063,0.197611631897944,0.974340787047167,0,0,1.2534494701135,0,0,0,0,1.34228891392159,4.63206443614049,1.72022758707021,7.76503360757966,7.07898993531771,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.00949464840019,0,0,0,0,0,0,0,0.533458648470704,0,0,0,0,1.86623178009892,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89031512934068,1.41696576325585,3.83121261737163,1.640930913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| ||
|short_description=p2@PTAFR | |||
}} | }} |
Latest revision as of 09:54, 17 September 2015
Short description: | p2@PTAFR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PTAFR_5end |
Coexpression cluster: | C26_Eosinophils_Neutrophils_CD14_CD14CD16_Basophils_Monocytederived_Whole |
Association with transcript: | 33bp_to_uc001bpl.2_5end |
EntrezGene: | PTAFR |
HGNC: | 9582 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 4.23e-60 | 72 |
leukocyte | 6.20e-55 | 136 |
defensive cell | 5.15e-50 | 48 |
phagocyte | 5.15e-50 | 48 |
monopoietic cell | 8.56e-50 | 59 |
monocyte | 8.56e-50 | 59 |
monoblast | 8.56e-50 | 59 |
promonocyte | 8.56e-50 | 59 |
granulocyte monocyte progenitor cell | 5.03e-49 | 67 |
nongranular leukocyte | 6.46e-49 | 115 |
myeloid lineage restricted progenitor cell | 1.10e-48 | 66 |
hematopoietic stem cell | 1.64e-48 | 168 |
macrophage dendritic cell progenitor | 2.03e-47 | 61 |
hematopoietic oligopotent progenitor cell | 4.90e-46 | 161 |
hematopoietic multipotent progenitor cell | 4.90e-46 | 161 |
hematopoietic lineage restricted progenitor cell | 5.17e-45 | 120 |
classical monocyte | 3.33e-44 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.33e-44 | 42 |
hematopoietic cell | 4.41e-44 | 177 |
myeloid cell | 3.51e-42 | 108 |
common myeloid progenitor | 3.51e-42 | 108 |
granulocyte | 3.87e-10 | 8 |
lymphocyte of B lineage | 2.95e-09 | 24 |
pro-B cell | 2.95e-09 | 24 |
intermediate monocyte | 3.46e-09 | 9 |
CD14-positive, CD16-positive monocyte | 3.46e-09 | 9 |
mesenchymal cell | 2.03e-07 | 354 |
macrophage | 4.59e-07 | 6 |
connective tissue cell | 8.84e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.66e-51 | 98 |
blood island | 1.66e-51 | 98 |
hemolymphoid system | 6.28e-47 | 108 |
bone marrow | 1.35e-41 | 76 |
immune system | 1.55e-37 | 93 |
bone element | 8.28e-37 | 82 |
adult organism | 6.47e-33 | 114 |
skeletal element | 1.87e-31 | 90 |
skeletal system | 4.82e-27 | 100 |
lateral plate mesoderm | 1.02e-15 | 203 |
neural tube | 1.44e-11 | 56 |
neural rod | 1.44e-11 | 56 |
future spinal cord | 1.44e-11 | 56 |
neural keel | 1.44e-11 | 56 |
musculoskeletal system | 2.92e-10 | 167 |
regional part of nervous system | 4.48e-10 | 53 |
regional part of brain | 4.48e-10 | 53 |
blood | 6.32e-10 | 15 |
haemolymphatic fluid | 6.32e-10 | 15 |
organism substance | 6.32e-10 | 15 |
regional part of forebrain | 1.48e-09 | 41 |
forebrain | 1.48e-09 | 41 |
anterior neural tube | 1.48e-09 | 41 |
future forebrain | 1.48e-09 | 41 |
telencephalon | 8.94e-09 | 34 |
tissue | 9.85e-09 | 773 |
brain grey matter | 1.18e-08 | 34 |
gray matter | 1.18e-08 | 34 |
regional part of telencephalon | 9.44e-08 | 32 |
cerebral hemisphere | 1.27e-07 | 32 |
central nervous system | 1.40e-07 | 81 |
brain | 1.45e-07 | 68 |
future brain | 1.45e-07 | 68 |