FFCP PHASE1:Hg19::chr1:31901841..31901876,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:31901841..31901876,+ to FFCP PHASE1:Hg19::chr1:31901841..31901876,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=347735 | |EntrezGene=347735 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=23231 | |HGNC=23231 | ||
|TSSclassifier=strong | |||
|UniProt=Q96AI1 | |UniProt=Q96AI1 | ||
|association_with_transcript=11bp_to_BC017085_5end | |||
|cluster_id=chr1:31901841..31901876,+ | |||
|coexpression_cluster_id=C1475 | |||
|description=CAGE_peak_3_at_SERINC2_5end | |||
|id=chr1:31901841..31901876,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.13e-12!254;CL:0002076!9.31e-11!43;CL:0000548!4.33e-10!679;CL:0000004!4.33e-10!679;CL:0000255!4.33e-10!679;CL:0002321!1.14e-09!248;CL:0000220!1.22e-09!246;CL:0000012!1.34e-09!682;CL:0000223!1.52e-09!59;CL:0002159!5.54e-08!13;CL:0002368!9.60e-08!13 | |||
|ontology_enrichment_celltype_v019=CL:0002368;2.61e-14;13!CL:0002076;7.15e-11;42!CL:0002202;1.22e-10;9!CL:0002632;1.22e-10;9!CL:0002159;2.33e-10;14!CL:0000244;1.67e-08;4!CL:0000731;1.67e-08;4!CL:0002327;1.76e-07;4!CL:0000307;4.85e-07;3!CL:0002328;5.29e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,2.65e-15,42;CL:0002368,3.14e-14,13;CL:0000223,4.90e-14,58;CL:0002202,1.32e-10,9;CL:0002632,1.32e-10,9;CL:0002159,2.20e-10,14;CL:0000066,1.62e-08,253;CL:0000244,2.13e-08,4;CL:0000731,2.13e-08,4;CL:0002327,1.16e-07,4;CL:0002328,4.64e-07,3;CL:0000068,5.85e-07,3;CL:0000069,5.85e-07,3;CL:0000307,5.85e-07,3;CL:0000377,5.85e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;7.37e-08;58!CL:0000377;4.85e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!5.30e-18!169;UBERON:0000925!5.30e-18!169;UBERON:0006595!5.30e-18!169;UBERON:0001007!2.28e-13!155;UBERON:0001555!2.28e-13!155;UBERON:0007026!2.28e-13!155;UBERON:0003102!3.99e-13!95;UBERON:0001004!1.39e-11!72;UBERON:0000161!1.75e-09!35;UBERON:0003104!3.54e-09!238;UBERON:0009142!3.54e-09!238;UBERON:0000165!5.70e-09!28;UBERON:0000930!5.70e-09!28;UBERON:0004921!6.21e-09!129;UBERON:0004185!6.21e-09!129;UBERON:0002100!6.95e-09!216;UBERON:0000077!1.22e-08!130;UBERON:0000467!2.30e-08!625;UBERON:0000480!3.22e-08!626;UBERON:0000468!1.72e-07!659;UBERON:0000065!1.76e-07!53;UBERON:0000166!4.51e-07!21;UBERON:0007196!5.18e-07!14;UBERON:0001558!5.18e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0000365;9.50e-10;5!UBERON:0007196;4.45e-09;15!UBERON:0001558;4.45e-09;15!UBERON:0000486;4.76e-09;12!UBERON:0005910;5.01e-08;6!UBERON:0003729;1.07e-07;13!UBERON:0001911;1.76e-07;4!UBERON:0004815;5.29e-07;3!UBERON:0002031;5.29e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,5.91e-13,160;UBERON:0000925,5.91e-13,160;UBERON:0006595,5.91e-13,160;UBERON:0003102,5.15e-11,99;UBERON:0000365,8.86e-10,5;UBERON:0007196,4.93e-09,15;UBERON:0001558,4.93e-09,15;UBERON:0001007,3.13e-08,145;UBERON:0001555,3.13e-08,145;UBERON:0007026,3.13e-08,145;UBERON:0003729,4.38e-08,13;UBERON:0005910,4.74e-08,6;UBERON:0001911,1.16e-07,4;UBERON:0005333,1.16e-07,4;UBERON:0008425,1.16e-07,4;UBERON:0005311,1.16e-07,4;UBERON:0004815,4.64e-07,3;UBERON:0002031,4.64e-07,3;UBERON:0000161,5.75e-07,36;UBERON:0004923,8.79e-07,66 | |||
|phase1_expression=1.2717486548939,1.2846031433459,1.26858963686374,1.0007329835313,0.893922188854576,1.74467704820074,0,0,0,0.737201809504527,4.18680700783456,0.436882744260345,1.05506791291381,0.495065411840187,0,0.672325146451775,0,0,0.487932798790507,0,0.816002764977012,0,0,0.136874425072884,0,0,0.410502947249729,0.157421562627358,0,0,0,2.75826367343678,5.12050061923025,10.3531122846701,0.154934401160603,0,0,0,0,0,0,0,0,0.290796477559129,0,0.242584061187816,0.232429036905685,0,0.309706370895104,0.28769239232215,0,0,0,0,0,0.564727018627814,0.272906150057846,0.449446968890169,0.306083892370903,0.320929027076094,0,0,0,0,0,0.56738522469114,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0.150176892841506,0,0,0.19891667719909,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.434539556882471,0,0,0.567208902984407,0,0.527008714158756,0.0654895377488563,4.37154345951051,3.33705998505986,0.324547393654683,0.174129737299267,0.398873881556595,0.238490624305342,0,0,0,0,0.694281003215189,0,0.419499436209906,0.275118041940067,0,0.258416759169329,0,0,0.402829317109147,0,0,0.367663080345869,0,0,0,0.225222960966644,0,0,0.183201743930407,0,0,3.48875241714027,0,0.506522046658319,0,0.286836620748814,0,0,0,0.74000264525148,0,0,0,0,0,0.468642863667593,1.24864030732128,1.1409436430889,0,0.469737994575059,0.323745888736263,0.140450806702248,0.61246251376468,1.96534907698829,1.34323515528495,0,0.741800787835671,0.910161361938026,2.15585442544872,0.673344455816265,2.25213335769535,0.831192346452549,0,1.22595118319608,0.600952235626387,0.226864366320042,0,0.213557388818567,0,0.300091096084402,0.412210116953756,0,0.37223371266318,0,0.194874010322397,0.252433774244115,0.184099797284599,0.323292113637624,1.42003837006646,0.403008392910561,0.67824236924195,1.93260853163297,6.00041465299836,2.29443676311203,0.121973706129595,0.132529768321485,0.116193942869518,0.414644220061482,0,0,1.56449532329816,0,1.38134921352481,2.3218396401599,0,0.591534000199219,0.842923450390509,0.482022059766964,0.55146986366197,0.871517776369625,0.474541238222193,0.269662616320329,0.784885860501384,0.38474715694639,0.738155454624648,1.40241773803446,0,0,0,1.96565443335525,2.36315962672562,0,0.614942192715568,0.343135620597051,4.7192622725709,0,3.31745608958382,1.85176890317059,0.325808305310325,1.03993478527958,0,0.231860809950154,0,0.288732895522148,0,0.380508304469197,0,0,0,0,0.148631162288728,0.93733833986777,3.86358894857377,3.1190521393325,1.34337784054272,3.19697332365358,2.68367875415648,0,0.088048434013226,0.414656231081544,0.288239906833923,0.12624243342638,0.063497894292169,0.381988425558278,0,0,0,0,0.285826432630578,0.112131084345361,0,0.1466765716419,0.129271715757778,3.57656445851882,0.845302752556,0.26593811658487,1.04007436911366,1.28603687131071,0,1.0656887160644,0,0,0,0,0.355391948742546,0,0.301439377059586,0,0.399891964728228,0,0,2.10833939483032,0,1.14861935834114,0,0.144781306667579,0.61642896765115,0.179060963239896,0,0,0,0,0.508189248444927,0,0,0.167516265334349,0,0,0,0,0,0,0.271265023699736,0.207970861530807,1.24900292158013,0.157702415033935,0.117141414992713,0,9.09630016223939,2.0694614258501,0,0.184369168541703,1.04260337361699,0.587403472388222,1.02943027143257,0,0,0,0.606255142892519,1.66435439510497,1.20956117331872,1.48864684691266,0,1.68396056659844,1.15325234330131,0.511707249066704,0.64341568457443,0,1.07946785661859,0.355123450626254,0.574890092096664,3.11552657510173,0.464841513839837,0.604297247958111,11.228362336984,5.89318329189736,0.459257792658427,2.54927635209404,1.18011973463482,0.902399225814824,0.770153371044148,0,0,0.316654886678627,0,0,0.215915916102139,0,0.541892875087706,1.00337954770971,0,4.98645605357235,0.447749509444357,0,0,0,0,0,0.9273691048295,0,0,3.44559322797703,11.7010844286574,0,0.096670718292122,0.308097234229289,0.307007349452259,0.964856007391714,0.537101224341368,1.0151168573996,0.681813019328807,0.356128142586949,4.46269271474641,3.0750410778417,0.255225424989168,4.2486267959331,1.39453664789186,0.31481234683064,0.6970372701606,0,0,0.869932992075073,0,0.143124886741991,0,0,0.571890581771475,0.767693373934002,0,0.318203247925937,0,1.07923474549989,1.09814811894422,0.353437207037059,0.404364963146632,0,0,0.48763373908959,0.243713489631284,4.22600587027022,0.272999822815972,0.707027159768564,0,0.551365343546124,0.66343897524122,0.438450885253763,1.15755106853338,1.31178950409327,0.405820753925408,0,0.281695602532241,0,0,0,0.709522128141196,0.422215270595328,0,0,0,2.02066436723575,8.71392958196524,10.8890984861323,0.188287601553558,6.88808596273968,8.42357378338128,5.76459199597678,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.851692475380653,0,0,0,0.166849141711909,0.390776190804081,0,0,0,0,0,0.561421621224659,0.146508179271894,0,0,3.12549761487054,0.47748896947538,0.296964680832639,0.307160702099232,0,0.140669416410513,0.111308705022906,0,0,0.19924798825107,0.552567831062295,0,0.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| 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| ||
|short_description=p3@SERINC2 | |||
}} | }} |
Latest revision as of 13:20, 17 September 2015
Short description: | p3@SERINC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SERINC2_5end |
Coexpression cluster: | C1475_Sebocyte_Prostate_Tracheal_Bronchial_Preadipocyte_Urothelial_Small |
Association with transcript: | 11bp_to_BC017085_5end |
EntrezGene: | SERINC2 |
HGNC: | 23231 |
UniProt: | Q96AI1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 2.65e-15 | 42 |
respiratory epithelial cell | 3.14e-14 | 13 |
endodermal cell | 4.90e-14 | 58 |
epithelial cell of tracheobronchial tree | 1.32e-10 | 9 |
epithelial cell of lower respiratory tract | 1.32e-10 | 9 |
general ecto-epithelial cell | 2.20e-10 | 14 |
epithelial cell | 1.62e-08 | 253 |
transitional epithelial cell | 2.13e-08 | 4 |
urothelial cell | 2.13e-08 | 4 |
mammary gland epithelial cell | 1.16e-07 | 4 |
bronchial epithelial cell | 4.64e-07 | 3 |
duct epithelial cell | 5.85e-07 | 3 |
branched duct epithelial cell | 5.85e-07 | 3 |
tracheal epithelial cell | 5.85e-07 | 3 |
tracheoblast | 5.85e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 5.91e-13 | 160 |
endoderm | 5.91e-13 | 160 |
presumptive endoderm | 5.91e-13 | 160 |
surface structure | 5.15e-11 | 99 |
urothelium | 8.86e-10 | 5 |
tracheobronchial tree | 4.93e-09 | 15 |
lower respiratory tract | 4.93e-09 | 15 |
digestive system | 3.13e-08 | 145 |
digestive tract | 3.13e-08 | 145 |
primitive gut | 3.13e-08 | 145 |
mouth mucosa | 4.38e-08 | 13 |
transitional epithelium | 4.74e-08 | 6 |
mammary gland | 1.16e-07 | 4 |
mammary bud | 1.16e-07 | 4 |
mammary ridge | 1.16e-07 | 4 |
mammary placode | 1.16e-07 | 4 |
lower respiratory tract epithelium | 4.64e-07 | 3 |
epithelium of bronchus | 4.64e-07 | 3 |
orifice | 5.75e-07 | 36 |
organ component layer | 8.79e-07 | 66 |