FFCP PHASE1:Hg19::chr12:40618891..40618902,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=120892 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18618 | |||
|TSSclassifier=strong | |||
|UniProt=Q5S007 | |||
|association_with_transcript=15bp_to_ENST00000298910_5end | |||
|cluster_id=chr12:40618891..40618902,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_6_at_LRRK2_5end | |||
|id=chr12:40618891..40618902,+ | |||
|ontology_enrichment_celltype=CL:0002057!5.30e-33!42;CL:0000738!9.21e-33!140;CL:0000860!4.62e-30!45;CL:0000766!6.38e-27!76;CL:0002087!1.09e-25!119;CL:0000037!6.57e-24!172;CL:0000566!6.57e-24!172;CL:0002009!1.14e-22!65;CL:0002194!4.66e-22!63;CL:0000576!4.66e-22!63;CL:0000040!4.66e-22!63;CL:0000559!4.66e-22!63;CL:0002032!1.27e-21!165;CL:0000837!1.27e-21!165;CL:0000988!1.63e-21!182;CL:0002031!1.26e-20!124;CL:0000557!8.21e-20!71;CL:0000839!8.88e-19!70;CL:0000763!5.90e-18!112;CL:0000049!5.90e-18!112;CL:0002393!8.71e-15!9;CL:0002397!8.71e-15!9;CL:0000945!1.58e-11!24;CL:0000826!1.58e-11!24;CL:0000094!1.25e-10!8;CL:0000236!2.59e-09!14;CL:0000081!2.60e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000945;3.17e-29;24!CL:0000236;4.17e-25;13!CL:0000775;3.23e-17;3!CL:0000875;5.15e-16;3!CL:0002396;5.15e-16;3!CL:0000576;1.06e-12;48!CL:0000094;2.83e-11;8!CL:0000766;3.06e-11;69!CL:0000860;6.27e-11;33!CL:0002057;6.27e-11;33!CL:0000542;1.34e-08;53!CL:0002087;3.23e-08;104!CL:0000081;3.28e-08;11!CL:0002393;4.50e-08;6!CL:0002397;4.50e-08;6!CL:0000988;1.22e-07;177!CL:0000738;1.58e-07;136!CL:0000473;3.21e-07;39!CL:0000234;3.21e-07;39!CL:0000219;9.19e-07;193 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.35e-32,136;CL:0000945,2.09e-29,24;CL:0000826,2.09e-29,24;CL:0002031,1.50e-27,120;CL:0002087,1.04e-26,115;CL:0002032,1.48e-26,161;CL:0000837,1.48e-26,161;CL:0000037,3.48e-25,168;CL:0000860,6.27e-24,42;CL:0002057,6.27e-24,42;CL:0000988,1.41e-23,177;CL:0000236,1.96e-23,14;CL:0000766,2.61e-21,72;CL:0000473,1.56e-20,48;CL:0000234,1.56e-20,48;CL:0002393,7.72e-20,9;CL:0002397,7.72e-20,9;CL:0002009,1.93e-17,61;CL:0000775,2.35e-17,3;CL:0000875,2.85e-16,3;CL:0002396,2.85e-16,3;CL:0002194,8.73e-16,59;CL:0000576,8.73e-16,59;CL:0000040,8.73e-16,59;CL:0000559,8.73e-16,59;CL:0000557,1.35e-15,67;CL:0000763,1.76e-14,108;CL:0000049,1.76e-14,108;CL:0000839,8.36e-14,66;CL:0000838,3.05e-12,52;CL:0000542,5.78e-12,53;CL:0000051,5.78e-12,53;CL:0000094,2.39e-11,8;CL:0000134,1.63e-08,354;CL:0000081,2.91e-08,11;CL:0002320,3.20e-08,361;CL:0000219,3.44e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;1.56e-16;42!CL:0000051;1.34e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!7.72e-25!102;UBERON:0003061!7.72e-25!102;UBERON:0002193!1.53e-22!112;UBERON:0002371!2.33e-16!80;UBERON:0001474!1.77e-14!86;UBERON:0007023!9.11e-13!115;UBERON:0004765!1.98e-12!101;UBERON:0001434!1.98e-12!101;UBERON:0002405!3.41e-12!115;UBERON:0000178!1.57e-09!15;UBERON:0000179!1.57e-09!15;UBERON:0000463!1.57e-09!15;UBERON:0001869!5.14e-08!32;UBERON:0001893!2.49e-07!34;UBERON:0002780!3.57e-07!41;UBERON:0001890!3.57e-07!41;UBERON:0006240!3.57e-07!41;UBERON:0003081!5.69e-07!216;UBERON:0003080!6.63e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.77e-08;15!UBERON:0000179;2.77e-08;15!UBERON:0000463;2.77e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,7.00e-18,98;UBERON:0003061,7.00e-18,98;UBERON:0002193,1.40e-17,108;UBERON:0002371,2.25e-13,76;UBERON:0001474,3.67e-12,82;UBERON:0002405,7.64e-12,93;UBERON:0004765,8.51e-11,90;UBERON:0001434,2.13e-09,100;UBERON:0000178,2.89e-08,15;UBERON:0000179,2.89e-08,15;UBERON:0000463,2.89e-08,15;UBERON:0002384,8.03e-08,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98674854944673,2.05251473624864,2.04648031415566,0.786728553697808,0.383829398097213,0.928896739896456,0,0,0,0,0,0,1.10799081706375,0.601633342410425,0.651032612147555,0,0,0.257575567634187,0.581592955118259,1.13362783106643,0.727752183563449,0.232429036905685,0,0,2.01384674625505,0.512321413058201,2.12834006899727,0,0.645484683583826,0,0.376484679085209,0.272906150057846,0.898893937780338,0,0,0.639337125799041,0.329851300186716,1.39624560335142,2.13112375266347,0.580418477257168,0,0,1.00499466102697,0.521482918420201,2.6062661364614,0,0,0.632924774881769,0.633765858935825,1.27562579979026,1.67726916406701,0.786300418025466,1.50176892841506,1.28580469357664,1.42506371870624,1.59133341759272,2.73996230646951,0,1.63841583378639,0,2.56038133539904,6.4063357925762,2.29900975981793,5.2883589822789,4.77026877267682,2.27685187643779,1.76171156811282,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.58902087180316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468008530278475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.99205619157746,2.99161459204025,10.3603878359009,0,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0.413536052245775,0.647142602455851,0.320182673410333,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52234282769651,0.764637207142375,0.569647187174163,1.19115887728894,1.23408681925858,2.59389324477087,0,1.58625035258854,0,0,0,0.929015875628594,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0,0,0,0,0,0.552567831062295,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.361789315876224,0,0,0,0,0,0,0.153900517007594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0.253243183823515,0,0,0,0,0,0,0,0,0.124252535565433,0,0,0,0,0,0.600420288709789,0,0,0,0,0.279282401272254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,1.5476039091159,0.0607495566580247,0,0,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0,0.171086837884329,0,0.106787412567695,0.157204305099666,0.414239055347196,0,0,1.33971858218986,0,0,0,0,0,0,0.886068179966986,0.122026264901963,0.1251909307065,0,0,0.248385611765534,0,0,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0.163565394255844,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0.0642292250964595,0,0.319267718114302,0,0,0.345786262321089,0.322951291263702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405225507710368,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0,0,0,0,0.135939465953663,0.0657727735628491,0,0,0,0.157115589916002,0,0,0.215927591218621,0,0.142953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0.245148321753905,0,0,0.297046400327086,0,0,0.657887425858975,0.322289439867886,0,0,0,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0.213233981900981,0.23806443146374,0,0.186224142887574,0,0,0.202117188958219,0,0,1.34704106029175,0.0717222053926763,0,0,0,0,0,0,0,0.406896178315738,0,0.201273793591026,0 | |||
|short_description=p6@LRRK2 | |||
}} |
Latest revision as of 06:48, 18 September 2015
Short description: | p6@LRRK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LRRK2_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 15bp_to_ENST00000298910_5end |
EntrezGene: | LRRK2 |
HGNC: | 18618 |
UniProt: | Q5S007 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 7.00e-18 | 98 |
blood island | 7.00e-18 | 98 |
hemolymphoid system | 1.40e-17 | 108 |
bone marrow | 2.25e-13 | 76 |
bone element | 3.67e-12 | 82 |
immune system | 7.64e-12 | 93 |
skeletal element | 8.51e-11 | 90 |
skeletal system | 2.13e-09 | 100 |
blood | 2.89e-08 | 15 |
haemolymphatic fluid | 2.89e-08 | 15 |
organism substance | 2.89e-08 | 15 |
connective tissue | 8.03e-08 | 371 |