FFCP PHASE1:Hg19::chr3:42850959..42850986,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1238,100506243 | |EntrezGene=1238,100506243 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1565,38708 | |HGNC=1565,38708 | ||
|TSSclassifier=strong | |||
|UniProt=O00590,C9JBD0 | |UniProt=O00590,C9JBD0 | ||
|association_with_transcript=0bp_to_ENST00000422265,ENST00000426937,ENST00000442925,ENST00000471537,ENST00000480215,ENST00000497921,NM_001296,uc003cme.2,uc003cmf.2,uc003cmg.2_5end | |association_with_transcript=0bp_to_ENST00000422265,ENST00000426937,ENST00000442925,ENST00000471537,ENST00000480215,ENST00000497921,NM_001296,uc003cme.2,uc003cmf.2,uc003cmg.2_5end | ||
|cluster_id=chr3:42850959..42850986,+ | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_2_at_CCBP2_5end,CAGE_peak_3_at_KRBOX1_5end | |description=CAGE_peak_2_at_CCBP2_5end,CAGE_peak_3_at_KRBOX1_5end | ||
|id=chr3:42850959..42850986,+ | |id=chr3:42850959..42850986,+ | ||
|ontology_enrichment_celltype=CL:0002076!3.70e-10!43;CL:0002541!2.93e-09!3;CL:0000039!4.83e-09!7;CL:0000586!4.83e-09!7;CL:0000349!7.49e-09!3;CL:0002577!7.49e-09!3;CL:0000223!1.26e-08!59;CL:0000239!1.57e-08!3;CL:1000615!1.57e-08!3;CL:0002306!1.57e-08!3;CL:0000066!1.05e-07!254;CL:1000507!4.14e-07!12;CL:1000494!4.14e-07!12;CL:1000449!7.60e-07!16 | |ontology_enrichment_celltype=CL:0002076!3.70e-10!43;CL:0002541!2.93e-09!3;CL:0000039!4.83e-09!7;CL:0000586!4.83e-09!7;CL:0000349!7.49e-09!3;CL:0002577!7.49e-09!3;CL:0000223!1.26e-08!59;CL:0000239!1.57e-08!3;CL:1000615!1.57e-08!3;CL:0002306!1.57e-08!3;CL:0000066!1.05e-07!254;CL:1000507!4.14e-07!12;CL:1000494!4.14e-07!12;CL:1000449!7.60e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.98e-35;19!CL:0002541;6.05e-19;3!CL:0002577;5.04e-18;3!CL:0000239;2.66e-17;3!CL:1000615;2.66e-17;3!CL:0002306;2.66e-17;3!CL:1000507;7.22e-14;10!CL:1000494;7.22e-14;10!CL:0002536;1.17e-12;2!CL:0002681;1.59e-11;12!CL:0002584;1.59e-11;12!CL:0002537;3.37e-11;5!CL:1000449;3.53e-09;15!CL:0002149;5.34e-09;6!CL:0002255;5.34e-09;6!CL:0000039;2.46e-08;7!CL:0000586;2.46e-08;7!CL:1000497;4.51e-08;17!CL:0002518;4.51e-08;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.98e-35,19;CL:0002541,6.05e-19,3;CL:0002577,5.04e-18,3;CL:0000239,2.66e-17,3;CL:1000615,2.66e-17,3;CL:0002306,2.66e-17,3;CL:1000507,7.42e-14,10;CL:1000494,7.42e-14,10;CL:0002536,1.21e-12,2;CL:0002681,1.62e-11,12;CL:0002584,1.62e-11,12;CL:0002537,3.31e-11,5;CL:1000449,3.59e-09,15;CL:0002149,5.05e-09,6;CL:0002255,5.05e-09,6;CL:0000039,2.52e-08,7;CL:0000586,2.52e-08,7;CL:1000497,4.58e-08,17;CL:0002518,4.58e-08,17 | |||
|ontology_enrichment_development_v019=UBERON:0003124;1.55e-07;1!UBERON:0000358;6.49e-07;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3001;5.34e-09;6!DOID:1799;1.98e-07;1!DOID:10165;1.98e-07;1!DOID:1798;1.98e-07;1!DOID:178;3.60e-07;1!DOID:326;3.60e-07;1!DOID:3978;3.60e-07;1!DOID:3394;3.60e-07;1!DOID:5844;3.60e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3001,5.05e-09,6;DOID:1799,1.98e-07,1;DOID:10165,1.98e-07,1;DOID:1798,1.98e-07,1;DOID:178,3.60e-07,1;DOID:326,3.60e-07,1;DOID:3978,3.60e-07,1;DOID:3394,3.60e-07,1;DOID:5844,3.60e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!3.84e-26!14;UBERON:0000158!3.84e-26!14;UBERON:0003124!5.79e-19!7;UBERON:0000478!8.38e-19!24;UBERON:0000995!2.53e-12!21;UBERON:0004175!5.83e-12!25;UBERON:0005795!1.20e-11!22;UBERON:0003975!1.20e-11!22;UBERON:0001987!2.05e-11!4;UBERON:0004340!2.05e-11!4;UBERON:0006554!2.53e-10!44;UBERON:0001008!5.24e-10!45;UBERON:0005156!5.60e-10!59;UBERON:0000990!5.60e-10!59;UBERON:0000305!1.08e-09!7;UBERON:0000476!2.93e-09!3;UBERON:0000920!2.93e-09!3;UBERON:0003133!4.07e-09!48;UBERON:0004923!5.44e-09!57;UBERON:0006853!1.57e-08!3;UBERON:0007685!1.57e-08!3;UBERON:0004134!1.57e-08!3;UBERON:0004871!2.04e-08!8;UBERON:0006555!2.67e-08!17;UBERON:0005103!2.67e-08!17;UBERON:0000083!2.67e-08!17;UBERON:0009201!2.67e-08!17;UBERON:0004819!2.67e-08!17;UBERON:0006553!2.67e-08!17;UBERON:0003074!2.67e-08!17;UBERON:0003060!2.67e-08!17;UBERON:0004119!5.42e-08!169;UBERON:0000925!5.42e-08!169;UBERON:0006595!5.42e-08!169;UBERON:0000080!9.33e-08!18;UBERON:0002120!9.33e-08!18;UBERON:0004875!9.33e-08!18;UBERON:0005721!9.33e-08!18;UBERON:0005754!9.33e-08!18;UBERON:0007297!9.33e-08!18;UBERON:0003134!4.03e-07!37;UBERON:0000474!4.03e-07!37;UBERON:0009773!4.14e-07!12;UBERON:0001231!4.14e-07!12;UBERON:0004810!4.14e-07!12;UBERON:0000464!4.87e-07!104;UBERON:0003064!6.87e-07!37;UBERON:0004211!7.60e-07!16;UBERON:0001285!7.60e-07!16;UBERON:0007684!7.60e-07!16;UBERON:0003220!7.60e-07!16;UBERON:0004208!7.60e-07!16;UBERON:0004876!7.79e-07!20 | |ontology_enrichment_uberon=UBERON:0005631!3.84e-26!14;UBERON:0000158!3.84e-26!14;UBERON:0003124!5.79e-19!7;UBERON:0000478!8.38e-19!24;UBERON:0000995!2.53e-12!21;UBERON:0004175!5.83e-12!25;UBERON:0005795!1.20e-11!22;UBERON:0003975!1.20e-11!22;UBERON:0001987!2.05e-11!4;UBERON:0004340!2.05e-11!4;UBERON:0006554!2.53e-10!44;UBERON:0001008!5.24e-10!45;UBERON:0005156!5.60e-10!59;UBERON:0000990!5.60e-10!59;UBERON:0000305!1.08e-09!7;UBERON:0000476!2.93e-09!3;UBERON:0000920!2.93e-09!3;UBERON:0003133!4.07e-09!48;UBERON:0004923!5.44e-09!57;UBERON:0006853!1.57e-08!3;UBERON:0007685!1.57e-08!3;UBERON:0004134!1.57e-08!3;UBERON:0004871!2.04e-08!8;UBERON:0006555!2.67e-08!17;UBERON:0005103!2.67e-08!17;UBERON:0000083!2.67e-08!17;UBERON:0009201!2.67e-08!17;UBERON:0004819!2.67e-08!17;UBERON:0006553!2.67e-08!17;UBERON:0003074!2.67e-08!17;UBERON:0003060!2.67e-08!17;UBERON:0004119!5.42e-08!169;UBERON:0000925!5.42e-08!169;UBERON:0006595!5.42e-08!169;UBERON:0000080!9.33e-08!18;UBERON:0002120!9.33e-08!18;UBERON:0004875!9.33e-08!18;UBERON:0005721!9.33e-08!18;UBERON:0005754!9.33e-08!18;UBERON:0007297!9.33e-08!18;UBERON:0003134!4.03e-07!37;UBERON:0000474!4.03e-07!37;UBERON:0009773!4.14e-07!12;UBERON:0001231!4.14e-07!12;UBERON:0004810!4.14e-07!12;UBERON:0000464!4.87e-07!104;UBERON:0003064!6.87e-07!37;UBERON:0004211!7.60e-07!16;UBERON:0001285!7.60e-07!16;UBERON:0007684!7.60e-07!16;UBERON:0003220!7.60e-07!16;UBERON:0004208!7.60e-07!16;UBERON:0004876!7.79e-07!20 | ||
|ontology_enrichment_uberon_v019=UBERON:0000478;8.90e-39;24!UBERON:0005631;7.35e-37;10!UBERON:0000158;7.35e-37;10!UBERON:0001987;8.04e-24;4!UBERON:0000305;8.23e-21;7!UBERON:0003124;6.05e-19;3!UBERON:0000920;6.05e-19;3!UBERON:0006853;2.66e-17;3!UBERON:0007685;2.66e-17;3!UBERON:0004134;2.66e-17;3!UBERON:0004211;7.22e-14;10!UBERON:0009773;7.22e-14;10!UBERON:0001231;7.22e-14;10!UBERON:0004810;7.22e-14;10!UBERON:0001225;1.59e-11;12!UBERON:0008987;1.59e-11;12!UBERON:0001851;3.53e-09;15!UBERON:0006555;3.53e-09;15!UBERON:0000353;3.53e-09;15!UBERON:0004819;3.53e-09;15!UBERON:0001285;3.53e-09;15!UBERON:0007684;3.53e-09;15!UBERON:0001301;8.42e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.01e-58,14;UBERON:0000158,2.01e-58,14;UBERON:0003124,5.66e-41,7;UBERON:0000478,8.90e-39,24;UBERON:0001987,8.04e-24,4;UBERON:0004340,8.04e-24,4;UBERON:0000305,8.23e-21,7;UBERON:0000920,6.05e-19,3;UBERON:0004871,3.45e-18,8;UBERON:0006853,2.66e-17,3;UBERON:0007685,2.66e-17,3;UBERON:0004134,2.66e-17,3;UBERON:0006554,6.24e-15,47;UBERON:0001008,1.43e-14,48;UBERON:0004810,7.42e-14,10;UBERON:0004175,1.69e-13,25;UBERON:0000995,1.25e-12,21;UBERON:0004923,2.03e-12,66;UBERON:0006555,4.87e-12,16;UBERON:0004819,4.87e-12,16;UBERON:0005795,5.14e-12,22;UBERON:0003975,5.14e-12,22;UBERON:0001225,1.62e-11,12;UBERON:0008987,1.62e-11,12;UBERON:0001851,3.59e-09,15;UBERON:0004211,3.59e-09,15;UBERON:0009773,3.59e-09,15;UBERON:0000353,3.59e-09,15;UBERON:0001231,3.59e-09,15;UBERON:0001285,3.59e-09,15;UBERON:0007684,3.59e-09,15;UBERON:0004208,3.59e-09,15;UBERON:0002113,3.34e-07,26;UBERON:0003918,3.34e-07,26;UBERON:0011143,3.34e-07,26;UBERON:0005095,3.34e-07,26;UBERON:0007687,3.34e-07,26;UBERON:0003134,8.69e-07,37;UBERON:0000474,8.69e-07,37;UBERON:0001301,9.18e-07,1 | |||
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| ||
|short_description=p2@CCBP2,p3@KRBOX1 | |short_description=p2@CCBP2,p3@KRBOX1 | ||
}} | }} |
Latest revision as of 06:55, 18 September 2015
Short description: | p2@CCBP2, p3@KRBOX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CCBP2_5end, CAGE_peak_3_at_KRBOX1_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000422265, ENST00000426937, ENST00000442925, ENST00000471537, ENST00000480215, ENST00000497921, NM_001296, uc003cme.2, uc003cmf.2, uc003cmg.2_5end |
EntrezGene: | 1238,100506243 |
HGNC: | 38708&submit=Submit 1565, 38708 |
UniProt: | O00590C9JBD0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.98e-35 | 19 |
chorionic membrane mesenchymal stem cell | 6.05e-19 | 3 |
placental epithelial cell | 5.04e-18 | 3 |
brush border epithelial cell | 2.66e-17 | 3 |
kidney cortex tubule cell | 2.66e-17 | 3 |
epithelial cell of proximal tubule | 2.66e-17 | 3 |
kidney tubule cell | 7.42e-14 | 10 |
nephron tubule epithelial cell | 7.42e-14 | 10 |
amniotic epithelial cell | 1.21e-12 | 2 |
kidney cortical cell | 1.62e-11 | 12 |
renal cortical epithelial cell | 1.62e-11 | 12 |
amnion mesenchymal stem cell | 3.31e-11 | 5 |
epithelial cell of nephron | 3.59e-09 | 15 |
epithelial cell of uterus | 5.05e-09 | 6 |
stromal cell of endometrium | 5.05e-09 | 6 |
germ line cell | 2.52e-08 | 7 |
germ cell | 2.52e-08 | 7 |
kidney cell | 4.58e-08 | 17 |
kidney epithelial cell | 4.58e-08 | 17 |
Ontology term | p-value | n |
---|---|---|
female reproductive endometrioid cancer | 5.05e-09 | 6 |
islet cell tumor | 1.98e-07 | 1 |
endocrine pancreas cancer | 1.98e-07 | 1 |
pancreatic endocrine carcinoma | 1.98e-07 | 1 |
vascular disease | 3.60e-07 | 1 |
ischemia | 3.60e-07 | 1 |
extrinsic cardiomyopathy | 3.60e-07 | 1 |
myocardial ischemia | 3.60e-07 | 1 |
myocardial infarction | 3.60e-07 | 1 |