FFCP PHASE1:Hg19::chr2:176972000..176972025,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3237 | |EntrezGene=3237 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5134 | |HGNC=5134 | ||
|TSSclassifier=strong | |||
|UniProt=P31277 | |UniProt=P31277 | ||
|association_with_transcript=0bp_to_ENST00000249504_5end | |association_with_transcript=0bp_to_ENST00000249504_5end | ||
|cluster_id=chr2:176972000..176972025,+ | |||
|coexpression_cluster_id=C1885 | |coexpression_cluster_id=C1885 | ||
|description=CAGE_peak_4_at_HOXD11_5end | |description=CAGE_peak_4_at_HOXD11_5end | ||
|id=chr2:176972000..176972025,+ | |id=chr2:176972000..176972025,+ | ||
|ontology_enrichment_celltype=CL:1000497!1.60e-17!18;CL:0002518!1.60e-17!18;CL:1000449!2.49e-15!16;CL:1000507!2.69e-15!12;CL:1000494!2.69e-15!12;CL:0002681!3.41e-11!13;CL:0002584!3.41e-11!13 | |ontology_enrichment_celltype=CL:1000497!1.60e-17!18;CL:0002518!1.60e-17!18;CL:1000449!2.49e-15!16;CL:1000507!2.69e-15!12;CL:1000494!2.69e-15!12;CL:0002681!3.41e-11!13;CL:0002584!3.41e-11!13 | ||
|ontology_enrichment_celltype_v019=CL:1000507;5.40e-30;10!CL:1000494;5.40e-30;10!CL:1000497;2.88e-28;17!CL:0002518;2.88e-28;17!CL:1000449;8.12e-28;15!CL:0002681;9.23e-20;12!CL:0002584;9.23e-20;12!CL:0000239;3.78e-10;3!CL:1000615;3.78e-10;3!CL:0002306;3.78e-10;3!CL:0000650;1.09e-07;2!CL:1000500;1.09e-07;2!CL:1000618;1.09e-07;2!CL:1001318;1.09e-07;2!CL:0002173;1.09e-07;2!CL:1000746;1.59e-07;7!CL:1000612;1.59e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,4.74e-30,10;CL:1000494,4.74e-30,10;CL:1000497,2.07e-28,17;CL:0002518,2.07e-28,17;CL:1000449,7.24e-28,15;CL:0002681,9.70e-20,12;CL:0002584,9.70e-20,12;CL:0000239,4.29e-10,3;CL:1000615,4.29e-10,3;CL:0002306,4.29e-10,3;CL:0000650,1.13e-07,2;CL:1000500,1.13e-07,2;CL:1000618,1.13e-07,2;CL:1001318,1.13e-07,2;CL:0002173,1.13e-07,2;CL:1000746,1.60e-07,7;CL:1000612,1.60e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0005795;4.58e-07;10 | |||
|ontology_enrichment_disease=DOID:0050687!1.95e-13!143;DOID:305!3.37e-09!106;DOID:14566!5.50e-09!239;DOID:171!2.91e-08!10;DOID:162!7.20e-08!235;DOID:0060072!9.69e-07!4 | |ontology_enrichment_disease=DOID:0050687!1.95e-13!143;DOID:305!3.37e-09!106;DOID:14566!5.50e-09!239;DOID:171!2.91e-08!10;DOID:162!7.20e-08!235;DOID:0060072!9.69e-07!4 | ||
|ontology_enrichment_disease_v019=DOID:171;1.47e-15;10!DOID:0060084;1.63e-09;3!DOID:127;1.63e-09;3!DOID:3095;3.38e-08;22!DOID:2994;3.38e-08;22!DOID:0060072;3.10e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:171,1.24e-15,10;DOID:0060084,1.25e-09,3;DOID:127,1.25e-09,3;DOID:0050687,9.67e-09,143;DOID:3095,2.80e-08,22;DOID:2994,2.80e-08,22;DOID:14566,3.72e-08,239;DOID:0060072,2.54e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0006554!9.89e-21!44;UBERON:0001008!4.58e-20!45;UBERON:0002113!2.38e-19!27;UBERON:0003918!2.38e-19!27;UBERON:0005095!2.38e-19!27;UBERON:0007687!2.38e-19!27;UBERON:0000489!4.56e-17!32;UBERON:0006555!3.49e-16!17;UBERON:0005103!3.49e-16!17;UBERON:0000083!3.49e-16!17;UBERON:0009201!3.49e-16!17;UBERON:0004819!3.49e-16!17;UBERON:0006553!3.49e-16!17;UBERON:0003074!3.49e-16!17;UBERON:0003060!3.49e-16!17;UBERON:0004211!2.49e-15!16;UBERON:0001285!2.49e-15!16;UBERON:0007684!2.49e-15!16;UBERON:0003220!2.49e-15!16;UBERON:0004208!2.49e-15!16;UBERON:0009773!2.69e-15!12;UBERON:0001231!2.69e-15!12;UBERON:0004810!2.69e-15!12;UBERON:0004876!4.73e-15!20;UBERON:0000080!4.82e-15!18;UBERON:0002120!4.82e-15!18;UBERON:0004875!4.82e-15!18;UBERON:0005721!4.82e-15!18;UBERON:0005754!4.82e-15!18;UBERON:0007297!4.82e-15!18;UBERON:0003887!2.75e-12!21;UBERON:0003064!5.50e-12!37;UBERON:0001225!3.41e-11!13;UBERON:0008987!3.41e-11!13;UBERON:0001737!3.31e-09!9;UBERON:0000058!3.80e-09!26;UBERON:0001851!1.34e-08!16;UBERON:0000353!6.09e-08!17;UBERON:0003103!2.74e-07!69;UBERON:0005795!4.79e-07!22 | |ontology_enrichment_uberon=UBERON:0006554!9.89e-21!44;UBERON:0001008!4.58e-20!45;UBERON:0002113!2.38e-19!27;UBERON:0003918!2.38e-19!27;UBERON:0005095!2.38e-19!27;UBERON:0007687!2.38e-19!27;UBERON:0000489!4.56e-17!32;UBERON:0006555!3.49e-16!17;UBERON:0005103!3.49e-16!17;UBERON:0000083!3.49e-16!17;UBERON:0009201!3.49e-16!17;UBERON:0004819!3.49e-16!17;UBERON:0006553!3.49e-16!17;UBERON:0003074!3.49e-16!17;UBERON:0003060!3.49e-16!17;UBERON:0004211!2.49e-15!16;UBERON:0001285!2.49e-15!16;UBERON:0007684!2.49e-15!16;UBERON:0003220!2.49e-15!16;UBERON:0004208!2.49e-15!16;UBERON:0009773!2.69e-15!12;UBERON:0001231!2.69e-15!12;UBERON:0004810!2.69e-15!12;UBERON:0004876!4.73e-15!20;UBERON:0000080!4.82e-15!18;UBERON:0002120!4.82e-15!18;UBERON:0004875!4.82e-15!18;UBERON:0005721!4.82e-15!18;UBERON:0005754!4.82e-15!18;UBERON:0007297!4.82e-15!18;UBERON:0003887!2.75e-12!21;UBERON:0003064!5.50e-12!37;UBERON:0001225!3.41e-11!13;UBERON:0008987!3.41e-11!13;UBERON:0001737!3.31e-09!9;UBERON:0000058!3.80e-09!26;UBERON:0001851!1.34e-08!16;UBERON:0000353!6.09e-08!17;UBERON:0003103!2.74e-07!69;UBERON:0005795!4.79e-07!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0004211;5.40e-30;10!UBERON:0009773;5.40e-30;10!UBERON:0001231;5.40e-30;10!UBERON:0004810;5.40e-30;10!UBERON:0002113;7.29e-30;24!UBERON:0011143;7.29e-30;24!UBERON:0006555;8.12e-28;15!UBERON:0004819;8.12e-28;15!UBERON:0001285;8.12e-28;15!UBERON:0007684;8.12e-28;15!UBERON:0000489;4.49e-27;29!UBERON:0006554;5.07e-26;30!UBERON:0001008;5.07e-26;30!UBERON:0001225;9.23e-20;12!UBERON:0008987;9.23e-20;12!UBERON:0002050;3.94e-16;5!UBERON:0005423;3.94e-16;5!UBERON:0001851;1.91e-15;15!UBERON:0000353;1.91e-15;15!UBERON:0002346;1.06e-13;4!UBERON:0000923;1.06e-13;4!UBERON:0010316;1.06e-13;4!UBERON:0005291;1.06e-13;4!UBERON:0006853;3.78e-10;3!UBERON:0007685;3.78e-10;3!UBERON:0004134;3.78e-10;3!UBERON:0005172;2.41e-08;52!UBERON:0005173;2.41e-08;52!UBERON:0003567;1.09e-07;2!UBERON:0003838;1.09e-07;2!UBERON:0003586;1.09e-07;2!UBERON:0005169;1.09e-07;2!UBERON:0002321;1.09e-07;2!UBERON:0005215;1.09e-07;2!UBERON:0002303;1.09e-07;2!UBERON:0002319;1.09e-07;2!UBERON:0000074;1.59e-07;7!UBERON:0001229;1.59e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,4.74e-30,10;UBERON:0004211,7.24e-28,15;UBERON:0009773,7.24e-28,15;UBERON:0001231,7.24e-28,15;UBERON:0001285,7.24e-28,15;UBERON:0007684,7.24e-28,15;UBERON:0004208,7.24e-28,15;UBERON:0002113,2.32e-27,26;UBERON:0003918,2.32e-27,26;UBERON:0011143,2.32e-27,26;UBERON:0005095,2.32e-27,26;UBERON:0007687,2.32e-27,26;UBERON:0006555,6.06e-26,16;UBERON:0004819,6.06e-26,16;UBERON:0000489,4.47e-25,31;UBERON:0001225,9.70e-20,12;UBERON:0008987,9.70e-20,12;UBERON:0006554,5.57e-17,47;UBERON:0001008,1.57e-16,48;UBERON:0001851,1.98e-15,15;UBERON:0000353,1.98e-15,15;UBERON:0005172,4.63e-11,54;UBERON:0005173,4.63e-11,54;UBERON:0006853,4.29e-10,3;UBERON:0007685,4.29e-10,3;UBERON:0004134,4.29e-10,3;UBERON:0002417,1.43e-09,60;UBERON:0000916,1.43e-09,60;UBERON:0003103,4.14e-09,68;UBERON:0005177,2.20e-08,101;UBERON:0003567,1.13e-07,2;UBERON:0003838,1.13e-07,2;UBERON:0003586,1.13e-07,2;UBERON:0005169,1.13e-07,2;UBERON:0002321,1.13e-07,2;UBERON:0005215,1.13e-07,2;UBERON:0002303,1.13e-07,2;UBERON:0002319,1.13e-07,2;UBERON:0010532,1.60e-07,7;UBERON:0000074,1.60e-07,7;UBERON:0001229,1.60e-07,7;UBERON:0001230,1.60e-07,7;UBERON:0003220,1.60e-07,7;UBERON:0005749,1.60e-07,7;UBERON:0004199,1.60e-07,7;UBERON:0004209,1.60e-07,7;UBERON:0004198,1.60e-07,7 | |||
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| ||
|short_description=p4@HOXD11 | |short_description=p4@HOXD11 | ||
}} | }} |
Latest revision as of 08:46, 18 September 2015
Short description: | p4@HOXD11 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HOXD11_5end |
Coexpression cluster: | C1885_neuroectodermal_nonsmall_small_neuroblastoma_embryonic_merkel_hairy |
Association with transcript: | 0bp_to_ENST00000249504_5end |
EntrezGene: | HOXD11 |
HGNC: | 5134 |
UniProt: | P31277 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 4.74e-30 | 10 |
nephron tubule epithelial cell | 4.74e-30 | 10 |
kidney cell | 2.07e-28 | 17 |
kidney epithelial cell | 2.07e-28 | 17 |
epithelial cell of nephron | 7.24e-28 | 15 |
kidney cortical cell | 9.70e-20 | 12 |
renal cortical epithelial cell | 9.70e-20 | 12 |
brush border epithelial cell | 4.29e-10 | 3 |
kidney cortex tubule cell | 4.29e-10 | 3 |
epithelial cell of proximal tubule | 4.29e-10 | 3 |
mesangial cell | 1.13e-07 | 2 |
kidney interstitial cell | 1.13e-07 | 2 |
juxtaglomerular complex cell | 1.13e-07 | 2 |
renal interstitial pericyte | 1.13e-07 | 2 |
extraglomerular mesangial cell | 1.13e-07 | 2 |
glomerular cell | 1.60e-07 | 7 |
kidney corpuscule cell | 1.60e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 1.24e-15 | 10 |
cell type benign neoplasm | 1.25e-09 | 3 |
leiomyoma | 1.25e-09 | 3 |
cell type cancer | 9.67e-09 | 143 |
germ cell and embryonal cancer | 2.80e-08 | 22 |
germ cell cancer | 2.80e-08 | 22 |
disease of cellular proliferation | 3.72e-08 | 239 |
benign neoplasm | 2.54e-07 | 4 |