FFCP PHASE1:Hg19::chr3:45838037..45838084,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54716 | |EntrezGene=54716 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30927 | |HGNC=30927 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NP91 | |UniProt=Q9NP91 | ||
|association_with_transcript=-2bp_to_NM_020208,NM_022405,uc011bai.1,uc011baj.1_5end | |association_with_transcript=-2bp_to_NM_020208,NM_022405,uc011bai.1,uc011baj.1_5end | ||
|cluster_id=chr3:45838037..45838084,- | |||
|description=CAGE_peak_1_at_SLC6A20_5end | |description=CAGE_peak_1_at_SLC6A20_5end | ||
|id=chr3:45838037..45838084,- | |id=chr3:45838037..45838084,- | ||
|ontology_enrichment_celltype=CL:1000507!8.17e-10!12;CL:1000494!8.17e-10!12;CL:1000449!2.91e-08!16;CL:1000497!5.20e-07!18;CL:0002518!5.20e-07!18 | |ontology_enrichment_celltype=CL:1000507!8.17e-10!12;CL:1000494!8.17e-10!12;CL:1000449!2.91e-08!16;CL:1000497!5.20e-07!18;CL:0002518!5.20e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:1000507;6.18e-13;10!CL:1000494;6.18e-13;10!CL:0002586;2.77e-12;3!CL:0000239;5.10e-12;3!CL:1000615;5.10e-12;3!CL:0002306;5.10e-12;3!CL:1000449;3.13e-11;15!CL:1000497;8.54e-10;17!CL:0002518;8.54e-10;17!CL:0000149;2.55e-09;4!CL:0002681;1.19e-07;12!CL:0002584;1.19e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,6.76e-13,10;CL:1000494,6.76e-13,10;CL:0002586,2.89e-12,3;CL:0000239,7.45e-12,3;CL:1000615,7.45e-12,3;CL:0002306,7.45e-12,3;CL:1000449,3.41e-11,15;CL:1000497,9.19e-10,17;CL:0002518,9.19e-10,17;CL:0000149,2.63e-09,4;CL:0002681,1.42e-07,12;CL:0002584,1.42e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.89e-34!115;UBERON:0005743!2.58e-25!86;UBERON:0003075!2.59e-25!86;UBERON:0007284!2.59e-25!86;UBERON:0000073!9.46e-25!94;UBERON:0001016!9.46e-25!94;UBERON:0001049!2.41e-24!57;UBERON:0005068!2.41e-24!57;UBERON:0006241!2.41e-24!57;UBERON:0007135!2.41e-24!57;UBERON:0002346!1.96e-23!90;UBERON:0001017!1.62e-21!82;UBERON:0002616!1.53e-18!59;UBERON:0000955!1.87e-18!69;UBERON:0006238!1.87e-18!69;UBERON:0003080!3.35e-18!42;UBERON:0003056!1.20e-17!61;UBERON:0004121!1.62e-17!169;UBERON:0002780!3.11e-17!41;UBERON:0001890!3.11e-17!41;UBERON:0006240!3.11e-17!41;UBERON:0000924!1.23e-16!173;UBERON:0006601!1.23e-16!173;UBERON:0000033!4.75e-16!123;UBERON:0000153!5.41e-16!129;UBERON:0007811!5.41e-16!129;UBERON:0001893!8.79e-13!34;UBERON:0000481!4.26e-12!347;UBERON:0002791!5.36e-12!33;UBERON:0002619!1.11e-11!22;UBERON:0001950!1.22e-11!20;UBERON:0000064!2.60e-11!219;UBERON:0002020!3.92e-11!34;UBERON:0003528!3.92e-11!34;UBERON:0001869!4.72e-11!32;UBERON:0000062!4.17e-10!511;UBERON:0000489!6.96e-10!32;UBERON:0009773!8.17e-10!12;UBERON:0001231!8.17e-10!12;UBERON:0004810!8.17e-10!12;UBERON:0000956!9.40e-10!25;UBERON:0000203!9.40e-10!25;UBERON:0004111!1.53e-09!241;UBERON:0000475!4.83e-09!365;UBERON:0006555!4.88e-09!17;UBERON:0005103!4.88e-09!17;UBERON:0000083!4.88e-09!17;UBERON:0009201!4.88e-09!17;UBERON:0004819!4.88e-09!17;UBERON:0006553!4.88e-09!17;UBERON:0003074!4.88e-09!17;UBERON:0003060!4.88e-09!17;UBERON:0004876!1.64e-08!20;UBERON:0000080!2.40e-08!18;UBERON:0002120!2.40e-08!18;UBERON:0004875!2.40e-08!18;UBERON:0005721!2.40e-08!18;UBERON:0005754!2.40e-08!18;UBERON:0007297!2.40e-08!18;UBERON:0000025!2.45e-08!194;UBERON:0004211!2.91e-08!16;UBERON:0001285!2.91e-08!16;UBERON:0007684!2.91e-08!16;UBERON:0003220!2.91e-08!16;UBERON:0004208!2.91e-08!16;UBERON:0000483!4.48e-08!309;UBERON:0000119!8.46e-08!312;UBERON:0003887!1.15e-07!21;UBERON:0002298!1.43e-07!8;UBERON:0000966!1.53e-07!5;UBERON:0005388!1.53e-07!5;UBERON:0001802!1.53e-07!5;UBERON:0003076!2.43e-07!15;UBERON:0003057!2.43e-07!15;UBERON:0002113!2.78e-07!27;UBERON:0003918!2.78e-07!27;UBERON:0005095!2.78e-07!27;UBERON:0007687!2.78e-07!27;UBERON:0001871!3.24e-07!7;UBERON:0003064!4.63e-07!37;UBERON:0000058!6.50e-07!26;UBERON:0000477!6.70e-07!286;UBERON:0005409!9.91e-07!35 | |ontology_enrichment_uberon=UBERON:0007023!5.89e-34!115;UBERON:0005743!2.58e-25!86;UBERON:0003075!2.59e-25!86;UBERON:0007284!2.59e-25!86;UBERON:0000073!9.46e-25!94;UBERON:0001016!9.46e-25!94;UBERON:0001049!2.41e-24!57;UBERON:0005068!2.41e-24!57;UBERON:0006241!2.41e-24!57;UBERON:0007135!2.41e-24!57;UBERON:0002346!1.96e-23!90;UBERON:0001017!1.62e-21!82;UBERON:0002616!1.53e-18!59;UBERON:0000955!1.87e-18!69;UBERON:0006238!1.87e-18!69;UBERON:0003080!3.35e-18!42;UBERON:0003056!1.20e-17!61;UBERON:0004121!1.62e-17!169;UBERON:0002780!3.11e-17!41;UBERON:0001890!3.11e-17!41;UBERON:0006240!3.11e-17!41;UBERON:0000924!1.23e-16!173;UBERON:0006601!1.23e-16!173;UBERON:0000033!4.75e-16!123;UBERON:0000153!5.41e-16!129;UBERON:0007811!5.41e-16!129;UBERON:0001893!8.79e-13!34;UBERON:0000481!4.26e-12!347;UBERON:0002791!5.36e-12!33;UBERON:0002619!1.11e-11!22;UBERON:0001950!1.22e-11!20;UBERON:0000064!2.60e-11!219;UBERON:0002020!3.92e-11!34;UBERON:0003528!3.92e-11!34;UBERON:0001869!4.72e-11!32;UBERON:0000062!4.17e-10!511;UBERON:0000489!6.96e-10!32;UBERON:0009773!8.17e-10!12;UBERON:0001231!8.17e-10!12;UBERON:0004810!8.17e-10!12;UBERON:0000956!9.40e-10!25;UBERON:0000203!9.40e-10!25;UBERON:0004111!1.53e-09!241;UBERON:0000475!4.83e-09!365;UBERON:0006555!4.88e-09!17;UBERON:0005103!4.88e-09!17;UBERON:0000083!4.88e-09!17;UBERON:0009201!4.88e-09!17;UBERON:0004819!4.88e-09!17;UBERON:0006553!4.88e-09!17;UBERON:0003074!4.88e-09!17;UBERON:0003060!4.88e-09!17;UBERON:0004876!1.64e-08!20;UBERON:0000080!2.40e-08!18;UBERON:0002120!2.40e-08!18;UBERON:0004875!2.40e-08!18;UBERON:0005721!2.40e-08!18;UBERON:0005754!2.40e-08!18;UBERON:0007297!2.40e-08!18;UBERON:0000025!2.45e-08!194;UBERON:0004211!2.91e-08!16;UBERON:0001285!2.91e-08!16;UBERON:0007684!2.91e-08!16;UBERON:0003220!2.91e-08!16;UBERON:0004208!2.91e-08!16;UBERON:0000483!4.48e-08!309;UBERON:0000119!8.46e-08!312;UBERON:0003887!1.15e-07!21;UBERON:0002298!1.43e-07!8;UBERON:0000966!1.53e-07!5;UBERON:0005388!1.53e-07!5;UBERON:0001802!1.53e-07!5;UBERON:0003076!2.43e-07!15;UBERON:0003057!2.43e-07!15;UBERON:0002113!2.78e-07!27;UBERON:0003918!2.78e-07!27;UBERON:0005095!2.78e-07!27;UBERON:0007687!2.78e-07!27;UBERON:0001871!3.24e-07!7;UBERON:0003064!4.63e-07!37;UBERON:0000058!6.50e-07!26;UBERON:0000477!6.70e-07!286;UBERON:0005409!9.91e-07!35 | ||
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| ||
|short_description=p1@SLC6A20 | |short_description=p1@SLC6A20 | ||
}} | }} |
Latest revision as of 09:23, 18 September 2015
Short description: | p1@SLC6A20 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SLC6A20_5end |
Coexpression cluster: | NA |
Association with transcript: | -2bp_to_NM_020208, NM_022405, uc011bai.1, uc011baj.1_5end |
EntrezGene: | SLC6A20 |
HGNC: | 30927 |
UniProt: | Q9NP91 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 6.76e-13 | 10 |
nephron tubule epithelial cell | 6.76e-13 | 10 |
retinal pigment epithelial cell | 2.89e-12 | 3 |
brush border epithelial cell | 7.45e-12 | 3 |
kidney cortex tubule cell | 7.45e-12 | 3 |
epithelial cell of proximal tubule | 7.45e-12 | 3 |
epithelial cell of nephron | 3.41e-11 | 15 |
kidney cell | 9.19e-10 | 17 |
kidney epithelial cell | 9.19e-10 | 17 |
visual pigment cell | 2.63e-09 | 4 |
kidney cortical cell | 1.42e-07 | 12 |
renal cortical epithelial cell | 1.42e-07 | 12 |