FFCP PHASE1:Hg19::chr11:67071050..67071063,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54961 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30581 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-33bp_to_ENST00000376757_5end | |||
|cluster_id=chr11:67071050..67071063,+ | |||
|description=CAGE_peak_3_at_SSH3_5end | |||
|id=chr11:67071050..67071063,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.44e-27!254;CL:0002076!3.72e-16!43;CL:0000223!2.08e-11!59;CL:0002251!5.00e-08!21;CL:0002368!5.24e-08!13;CL:0000076!7.36e-08!62 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.50e-16;42!CL:0002368;2.36e-14;13!CL:0002202;1.91e-08;9!CL:0002632;1.91e-08;9!CL:0002251;4.06e-08;20!CL:0002328;1.13e-07;3!CL:0000307;3.54e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.59e-25,253;CL:0002076,1.95e-21,42;CL:0000223,4.09e-16,58;CL:0002368,9.96e-15,13;CL:0002202,1.72e-08,9;CL:0002632,1.72e-08,9;CL:0002251,4.96e-08,20;CL:0000076,5.80e-08,63;CL:0002328,1.06e-07,3;CL:0000068,3.19e-07,3;CL:0000069,3.19e-07,3;CL:0000307,3.19e-07,3;CL:0000377,3.19e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;6.45e-09;58!CL:0000377;3.54e-07;3 | |||
|ontology_enrichment_disease=DOID:305!2.24e-12!106;DOID:1749!2.01e-08!14;DOID:299!4.46e-08!25;DOID:0050687!5.37e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:299;2.10e-10;25!DOID:1749;4.30e-10;14!DOID:5093;4.83e-09;4!DOID:1612;4.83e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.73e-13,106;DOID:299,2.43e-10,25;DOID:1749,5.34e-10,14;DOID:5093,5.25e-09,4;DOID:1612,5.25e-09,4;DOID:0050687,1.85e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!9.88e-13!169;UBERON:0000925!9.88e-13!169;UBERON:0006595!9.88e-13!169;UBERON:0001004!5.37e-10!72;UBERON:0001007!6.69e-10!155;UBERON:0001555!6.69e-10!155;UBERON:0007026!6.69e-10!155;UBERON:0001008!9.98e-10!45;UBERON:0006554!2.83e-09!44;UBERON:0000468!1.80e-08!659;UBERON:0000464!2.04e-08!104;UBERON:0000161!3.43e-08!35;UBERON:0000481!3.44e-08!347;UBERON:0003104!5.06e-08!238;UBERON:0009142!5.06e-08!238;UBERON:0003064!6.18e-08!37;UBERON:0005157!6.42e-08!51;UBERON:0000475!6.91e-08!365;UBERON:0004921!9.40e-08!129;UBERON:0004185!9.40e-08!129;UBERON:0000467!2.06e-07!625;UBERON:0000065!2.30e-07!53;UBERON:0000480!2.80e-07!626;UBERON:0000062!4.56e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0005911;6.79e-09;36!UBERON:0000161;3.39e-08;19!UBERON:0000166;3.39e-08;19!UBERON:0004815;1.13e-07;3!UBERON:0002031;1.13e-07;3!UBERON:0000365;4.52e-07;5!UBERON:0002294;7.81e-07;7!UBERON:0001173;7.81e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.74e-14,160;UBERON:0000925,1.74e-14,160;UBERON:0006595,1.74e-14,160;UBERON:0001004,1.01e-10,74;UBERON:0001007,1.01e-10,145;UBERON:0001555,1.01e-10,145;UBERON:0007026,1.01e-10,145;UBERON:0000161,1.55e-10,36;UBERON:0004921,3.79e-09,118;UBERON:0000166,6.50e-08,22;UBERON:0004815,1.06e-07,3;UBERON:0002031,1.06e-07,3;UBERON:0005911,1.71e-07,82;UBERON:0000065,2.50e-07,54;UBERON:0000915,3.52e-07,52;UBERON:0000365,5.05e-07,5;UBERON:0005157,7.20e-07,47 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0.737201809504527,2.79120467188971,0.655324116390517,0.527533956456907,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0.125542639594803,0,0,0,0.393364276848904,0,0,6.43594857135249,4.819294700452,4.43704812200145,0,0,0.293600439334847,0,0.200544447470142,0,0,0.32389366601898,0,0.290796477559129,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0.212604299965044,0,0.336985893439485,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260118695119756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.189069634328136,0,0.175669571386252,0.0654895377488563,4.00724817121796,3.33705998505986,0,0,0.26591592103773,0,0,0,0,0.860234595106124,0.347140501607594,0,0,0.550236083880135,0,0,0.35576626268671,0.33472061276467,0,0,0.24406205754817,0,0,0.0892997282840798,0,0.112611480483322,0,0,0.183201743930407,0,0,2.61656431285521,0.496971951695318,0.12663051166458,0.529636723252875,0.286836620748814,0,0,0,0.24666754841716,0,0.134710672069688,0,0.151357427644931,0,0,0.312160076830321,0.570471821544449,0.448346041655403,0,0,0,0.408308342509787,0,0.309977343527296,0,0.247266929278557,0,0.718618141816238,0,0.125118519871964,0,0,0,0,0.113432183160021,0,0,0.211931901159562,0.300091096084402,0,0.515281080091258,0.37223371266318,0.168776332241266,0.0974370051611986,0.252433774244115,0.0920498986422993,0.161646056818812,0,0.10075209822764,0.169560592310488,2.51239109112286,2.18196896472668,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0.354920400119532,0.337169380156203,0,0.220587945464788,0,0.237270619111097,0.539325232640658,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,1.47586126251736,0.343135620597051,2.85350742062426,4.49607013030478,0.703702806881416,0.833296006426766,0.325808305310325,0,0,0.231860809950154,0.117408694235822,0,0,0.380508304469197,3.1608175918371,4.29243081047436,0.246217006087397,0,0,0.93733833986777,2.35174979478403,0.708875486211932,1.34337784054272,0.581267877027924,1.53353071666084,0,0,0.621984346622316,0.288239906833923,0.12624243342638,0.126995788584338,0,0,0,0.102827492703324,0,0,0.112131084345361,0,0,0.387815147273333,0,0,0,0,0,0,0.266422179016099,0,0.542621605391443,0,0,0,0.791951872933429,0.904318131178758,0.871533458600294,1.59956785891291,1.2162378064119,0,0,0.239624855491583,0,0,0,0.410952645100767,0.179060963239896,0,0,0,0.256686072559497,0,0,0,0,0,1.49801404789436,0,0.414415513436035,0,0,0,0.207970861530807,0.178428988797162,0.157702415033935,0.117141414992713,0,0,0,0.664225598535437,0.184369168541703,0.173767228936166,0,0.686286847621712,0,0,0,0,0,0,0,0.153461973288062,0.280660094433074,0.256278298511402,0,0.160853921143607,0,0,0,0.0821271560138091,0,0,0.362578348774867,2.80709058424599,1.38121483403844,0,0,0.262248829918848,0.902399225814824,0.385076685522074,4.70609861506113,0,0.527758144464379,0,0.510281115829547,0.431831832204279,0,1.89662506280697,3.51182841698397,1.01950509218015,0.831076008928724,0.895499018888713,0,0,0.512900250232778,1.31205858279882,0,0.103041011647722,0,0.165018999841176,1.14853107599234,0.650060246036521,0,0.096670718292122,0,0.15350367472613,0.137836572484531,0.214840489736547,0.145016693914229,0.0852266274161009,0,2.64455864577565,1.72971060628596,3.57315594984836,1.8208400553999,0,0.31481234683064,1.3940745403212,0.308033580176089,0,0.869932992075073,0.9266210955196,0.143124886741991,0,0,0.190630193923825,0.255897791311334,0.42793898803392,0,0.78494864019923,0,0,0.117812402345686,0.808729926293264,0,0,0,0,0,0,0.282810863907425,1.13008116620243,0,1.32687795048244,0.438450885253763,0.578775534266688,0,0.202910376962704,0,0.281695602532241,0.143411352204052,0.392996164052485,0,0,0,0,0,0.349934720244983,2.69421915631434,3.35151137767894,4.3556393944529,0.376575203107117,4.3050537267123,3.36942951335251,5.76459199597678,0.918893600827838,1.01489521846434,0,0,0.714695326373367,0.822724546172388,3.24236655596359,0,0,0,0.962479855263359,3.18552280775341,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0.677167111206413,0.1605880751037,0,0.851692475380653,0,0.614481528616916,0.447352215784832,0.166849141711909,0,0.278406173895242,0,0,0,0,1.49712432326576,0,0.242721043499027,0,0,1.19372242368845,1.78178808499583,2.45728561679386,0,0,0.111308705022906,0,0.844501632511974,0.19924798825107,0.828851746593443,0,0.20453736500431,0,0.311039587661807,2.42644548097782,1.9692329214317,0,2.07151151837561,0,0,0,0.185536196323703,0,3.38556089410803,2.53633999988968,2.17499872630438,4.21035758656349,0.508507300585533,2.36387681767936,0,0,0.347249989866585,0,0.361789315876224,0,0.221158519862449,0.886642856860642,0.438770794307945,0,3.06732237412927,0.538651809526579,0,0,0.179515288819544,0,0.638002319463839,0.549585560411174,1.06606955203727,0,0.31396051279005,0.166211681900156,0,0,0,0,0,0,0.652931232636591,0.706765357169704,0,0,0.796118080530053,1.22206028986725,0,0,0,0.202203398942031,0,0,0,1.36965233252463,0.242780379534093,3.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| |||
|short_description=p3@SSH3 | |||
}} |
Latest revision as of 17:23, 19 September 2015
Short description: | p3@SSH3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SSH3_5end |
Coexpression cluster: | NA |
Association with transcript: | -33bp_to_ENST00000376757_5end |
EntrezGene: | SSH3 |
HGNC: | 30581 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.59e-25 | 253 |
endo-epithelial cell | 1.95e-21 | 42 |
endodermal cell | 4.09e-16 | 58 |
respiratory epithelial cell | 9.96e-15 | 13 |
epithelial cell of tracheobronchial tree | 1.72e-08 | 9 |
epithelial cell of lower respiratory tract | 1.72e-08 | 9 |
epithelial cell of alimentary canal | 4.96e-08 | 20 |
squamous epithelial cell | 5.80e-08 | 63 |
bronchial epithelial cell | 1.06e-07 | 3 |
duct epithelial cell | 3.19e-07 | 3 |
branched duct epithelial cell | 3.19e-07 | 3 |
tracheal epithelial cell | 3.19e-07 | 3 |
tracheoblast | 3.19e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.74e-14 | 160 |
endoderm | 1.74e-14 | 160 |
presumptive endoderm | 1.74e-14 | 160 |
respiratory system | 1.01e-10 | 74 |
digestive system | 1.01e-10 | 145 |
digestive tract | 1.01e-10 | 145 |
primitive gut | 1.01e-10 | 145 |
orifice | 1.55e-10 | 36 |
subdivision of digestive tract | 3.79e-09 | 118 |
oral opening | 6.50e-08 | 22 |
lower respiratory tract epithelium | 1.06e-07 | 3 |
epithelium of bronchus | 1.06e-07 | 3 |
endo-epithelium | 1.71e-07 | 82 |
respiratory tract | 2.50e-07 | 54 |
thoracic segment of trunk | 3.52e-07 | 52 |
urothelium | 5.05e-07 | 5 |
epithelial fold | 7.20e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.73e-13 | 106 |
adenocarcinoma | 2.43e-10 | 25 |
squamous cell carcinoma | 5.34e-10 | 14 |
thoracic cancer | 5.25e-09 | 4 |
breast cancer | 5.25e-09 | 4 |
cell type cancer | 1.85e-08 | 143 |