FFCP PHASE1:Hg19::chr9:123165453..123165477,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55755 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18672 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=462bp_to_ENST00000484546_5end | |||
|cluster_id=chr9:123165453..123165477,- | |||
|coexpression_cluster_id=C125 | |||
|description=CAGE_peak_6_at_CDK5RAP2_5end | |||
|id=chr9:123165453..123165477,- | |||
|ontology_enrichment_celltype=CL:0000048!1.97e-19!430;CL:0000723!5.51e-19!436;CL:0002320!1.16e-18!365;CL:0000034!8.07e-18!444;CL:0002057!1.67e-17!42;CL:0000860!1.37e-15!45;CL:0000134!3.30e-15!358;CL:0000144!3.11e-14!625;CL:0002371!3.85e-14!591;CL:0000219!6.29e-13!390;CL:0002194!7.60e-12!63;CL:0000576!7.60e-12!63;CL:0000040!7.60e-12!63;CL:0000559!7.60e-12!63;CL:0002009!3.86e-11!65;CL:0000548!4.37e-11!679;CL:0000004!4.37e-11!679;CL:0000255!4.37e-11!679;CL:0000012!8.58e-11!682;CL:0000055!9.30e-11!180;CL:0000057!1.10e-10!75;CL:0000839!3.24e-10!70;CL:0000557!2.71e-09!71;CL:0000766!1.25e-08!76;CL:0002620!4.97e-08!23;CL:0000003!6.09e-08!722;CL:0002540!3.33e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.25e-43;33!CL:0002057;1.25e-43;33!CL:0000473;8.24e-31;39!CL:0000234;8.24e-31;39!CL:0000576;7.98e-20;48!CL:0000766;2.54e-10;69!CL:0002564;1.29e-08;3!CL:0000515;3.50e-08;3!CL:0002540;9.11e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.27e-36,42;CL:0002057,1.27e-36,42;CL:0000473,1.24e-33,48;CL:0000234,1.24e-33,48;CL:0002194,2.47e-25,59;CL:0000576,2.47e-25,59;CL:0000040,2.47e-25,59;CL:0000559,2.47e-25,59;CL:0002009,2.89e-24,61;CL:0000839,7.02e-22,66;CL:0000557,1.91e-21,67;CL:0000766,1.86e-19,72;CL:0002320,2.47e-14,361;CL:0000048,7.23e-11,427;CL:0000763,1.21e-10,108;CL:0000049,1.21e-10,108;CL:0002087,1.32e-10,115;CL:0000723,1.67e-10,433;CL:0000134,2.16e-10,354;CL:0000034,4.92e-10,441;CL:0002031,7.09e-10,120;CL:0002564,1.38e-08,3;CL:0000219,2.65e-08,386;CL:0000738,6.37e-08,136;CL:0002540,8.02e-08,6 | |||
|ontology_enrichment_development_v019=CL:0002057;2.55e-28;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!8.57e-19!375;UBERON:0002204!9.29e-14!167;UBERON:0002371!7.97e-13!80;UBERON:0001474!8.82e-12!86;UBERON:0002405!9.59e-12!115;UBERON:0004765!1.81e-11!101;UBERON:0001434!1.81e-11!101;UBERON:0002200!8.09e-09!11;UBERON:0006876!8.09e-09!11;UBERON:0002390!1.02e-08!102;UBERON:0003061!1.02e-08!102;UBERON:0002193!1.57e-08!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;1.40e-13;5!UBERON:0002216;1.40e-13;5!UBERON:0011134;1.40e-13;5!UBERON:0002209;1.40e-13;5!UBERON:0002213;1.40e-13;5!UBERON:0007844;1.40e-13;5!UBERON:0011138;1.40e-13;5!UBERON:0001130;1.40e-13;5!UBERON:0001066;1.40e-13;5!UBERON:0001468;1.40e-13;5!UBERON:0002242;1.29e-08;3!UBERON:0004765;1.29e-08;26!UBERON:0004905;2.53e-08;8!UBERON:0000982;2.53e-08;8!UBERON:0004770;2.53e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004765,8.86e-31,90;UBERON:0002371,2.53e-27,76;UBERON:0001434,1.09e-26,100;UBERON:0001474,1.10e-24,82;UBERON:0002405,2.80e-22,93;UBERON:0002204,2.83e-20,167;UBERON:0002390,3.09e-19,98;UBERON:0003061,3.09e-19,98;UBERON:0002193,5.98e-18,108;UBERON:0002384,2.41e-14,371;UBERON:0011135,1.57e-13,5;UBERON:0002216,1.57e-13,5;UBERON:0011134,1.57e-13,5;UBERON:0002209,1.57e-13,5;UBERON:0002213,1.57e-13,5;UBERON:0005856,1.57e-13,5;UBERON:0005866,1.57e-13,5;UBERON:0005863,1.57e-13,5;UBERON:0007844,1.57e-13,5;UBERON:0011138,1.57e-13,5;UBERON:0001130,1.57e-13,5;UBERON:0001066,1.57e-13,5;UBERON:0001468,1.57e-13,5;UBERON:0000926,4.49e-12,315;UBERON:0004120,4.49e-12,315;UBERON:0006603,4.49e-12,315;UBERON:0003081,1.58e-09,203;UBERON:0002242,1.38e-08,3;UBERON:0003068,1.38e-08,3;UBERON:0002328,1.38e-08,3;UBERON:0004880,1.38e-08,3;UBERON:0004905,2.70e-08,8;UBERON:0000982,2.70e-08,8;UBERON:0004770,2.70e-08,8 | |||
|phase1_expression=0,0.642301571672949,0.422863212287913,0,0,0.872338524100369,0,5.05375898741465,0,0,0,0,0,5.44571953024205,3.31397375727916,0.672325146451775,1.20538905604795,0,0.975865597581014,0,0.816002764977012,0,0,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515151135268373,1.01778767145695,1.88937971844405,0.727752183563449,3.71886459049095,5.75635043230556,4.64559556342655,8.05538698502021,4.86705342405291,1.18241114944293,0,0.645484683583826,2.70852973188684,2.63539275359647,3.27487380069415,2.24723484445085,1.83650335422542,1.28371610830437,1.27867425159808,4.61791820261403,4.58766412529753,0.852449501065388,8.12585868160035,7.37600792098482,5.60540024096017,6.28121663141858,3.65038042894141,2.38907729175628,5.44859552370032,6.99727508376373,4.43047342417238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.383587685530591,0,0.50133791063589,0.579386075843295,1.5905718941022,0,0.283604451492204,0.221729397462564,0.614843499851882,0,0,0,0,0,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2333377420858,0,0.134710672069688,0,0.151357427644931,1.15235184896,0.70296429550139,0.312160076830321,0.570471821544449,0.448346041655403,0.23486899728753,0.647491777472526,0.561803226808994,0.204154171254893,0,0.929932030581889,0,0,1.82032272387605,0.718618141816238,0.168336113954066,0.375355559615893,0,0,0.919463387397059,0,0,0.538168907066586,0.427114777637135,3.17897851739343,0.600182192168805,1.03052529238439,0,0,0,0.584622030967192,0.504867548488229,1.10459878370759,0,0.355009592516614,0.906768884048762,0.508681776931463,0,0,0,0,0,0,0,0,0,0,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.8231480226628,1.47008711385542,0,0,0,0,0,1.02940686179115,0,0,0,0.0925884451585296,0,2.07986957055916,0,0.115930404975077,0.587043471179108,0,0,0,0,0,0,1.40402559083543,0.297262324577456,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0.1466765716419,0.129271715757778,3.57656445851882,0.845302752556,0,0,8.23063597638855,8.5109479213967,3.99633268524149,0,0,2.46972101034231,0.65147236858747,0.355391948742546,3.16780749173372,0,0,0,0,0,0,0.239624855491583,0,0,1.59259437334337,4.9314317412092,1.25342674267927,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0.414415513436035,2.20844685094452,8.50289885801451,1.35632511849868,0,0.356857977594324,0.157702415033935,0.35142424497814,0.300946099727719,0,0,0.664225598535437,2.76553752812555,0.173767228936166,3.52442083432933,0.343143423810856,0,0,0.106727557803444,0,0,0,0.248107807818777,0,0,0,1.53512174720011,0.321707842287215,0,1.07946785661859,1.06537035187876,0.492762936082855,1.03850885836724,0.581051892299796,0,0,0,0.459257792658427,0.546273504020151,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0.215915916102139,0,0.270946437543853,0,0,0,0,0.219259876645935,0,0,0.328014645699706,0,0.206082023295445,0,0,0,0,0,0.096670718292122,4.46740989632469,1.84204409671355,0.551346289938122,0.214840489736547,0.580066775656914,1.44885266607372,0,0,0,0,0,0.464845549297286,0,0,0,0.532306030317022,0,0.18532421910392,0,0.372158369359667,0.316379424718726,1.14378116354295,0,0,0.318203247925937,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0,0,0.545999645631943,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,2.65631221636001,2.0996083214699,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.556812347790485,0,0,0,0,0,0.146508179271894,0,0,0,0,0,0,0,0,0,6.59215496907038,0,0,0,0,0.20453736500431,0,0,0,0.179021174675609,0,0,0,4.44547960578548,0.969332746095218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227884111694002,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569219092059585,0,0,0,0,0,0,0,0,0,0,0,0,0.274083849293502,0.596143835108969,0,0,0.561111741760736,0,0,0,0,0,0,0,0,0,0,0.611989305817931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295282444544246,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,1.07572403599707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71086837884329,0,0.106787412567695,0,0.414239055347196,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,1.79105763464249,0,0.554805861502613,0.378806010550178,2.51567901752575,0.889811221596536,0.457680136793847,0.302461847526478,1.70980920641059,2.95710299979268,0.159296767163702,0.449803112163605,0.621051827505038,0.414706207840855,0.265841714557995,0,0,0,0.813741466409323,1.81848659202559,0.107410557042488,2.32016879939247,0,0,0,0,0,0,0,0,0,0,0,0,0.926404341482917,0.219284049578707,0,0.192914038270915,0,0,3.10887307558079,0.303859956177382,0,0,0,0,0,38.0948008568265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0.705351887381368,0,0,0,0,0,0,0,0,0,0,0.943757786781923,0,0,0,0,0,0,0.40341013740704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,1.02892805662451,0.0679697329768317,0,0.118193840883968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982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| |||
|short_description=p6@CDK5RAP2 | |||
}} |
Latest revision as of 19:11, 24 September 2015
Short description: | p6@CDK5RAP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_CDK5RAP2_5end |
Coexpression cluster: | C125_mucinous_alveolar_mesothelioma_Smooth_lung_CD14_Nucleus |
Association with transcript: | 462bp_to_ENST00000484546_5end |
EntrezGene: | CDK5RAP2 |
HGNC: | 18672 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.27e-36 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.27e-36 | 42 |
defensive cell | 1.24e-33 | 48 |
phagocyte | 1.24e-33 | 48 |
monopoietic cell | 2.47e-25 | 59 |
monocyte | 2.47e-25 | 59 |
monoblast | 2.47e-25 | 59 |
promonocyte | 2.47e-25 | 59 |
macrophage dendritic cell progenitor | 2.89e-24 | 61 |
myeloid lineage restricted progenitor cell | 7.02e-22 | 66 |
granulocyte monocyte progenitor cell | 1.91e-21 | 67 |
myeloid leukocyte | 1.86e-19 | 72 |
connective tissue cell | 2.47e-14 | 361 |
multi fate stem cell | 7.23e-11 | 427 |
myeloid cell | 1.21e-10 | 108 |
common myeloid progenitor | 1.21e-10 | 108 |
nongranular leukocyte | 1.32e-10 | 115 |
somatic stem cell | 1.67e-10 | 433 |
mesenchymal cell | 2.16e-10 | 354 |
stem cell | 4.92e-10 | 441 |
hematopoietic lineage restricted progenitor cell | 7.09e-10 | 120 |
nucleus pulposus cell of intervertebral disc | 1.38e-08 | 3 |
motile cell | 2.65e-08 | 386 |
leukocyte | 6.37e-08 | 136 |
mesenchymal stem cell of the bone marrow | 8.02e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
skeletal element | 8.86e-31 | 90 |
bone marrow | 2.53e-27 | 76 |
skeletal system | 1.09e-26 | 100 |
bone element | 1.10e-24 | 82 |
immune system | 2.80e-22 | 93 |
musculoskeletal system | 2.83e-20 | 167 |
hematopoietic system | 3.09e-19 | 98 |
blood island | 3.09e-19 | 98 |
hemolymphoid system | 5.98e-18 | 108 |
connective tissue | 2.41e-14 | 371 |
intervertebral cartilage | 1.57e-13 | 5 |
symphysis | 1.57e-13 | 5 |
nonsynovial joint | 1.57e-13 | 5 |
fibrous joint | 1.57e-13 | 5 |
cartilaginous joint | 1.57e-13 | 5 |
developing mesenchymal condensation | 1.57e-13 | 5 |
pre-cartilage condensation | 1.57e-13 | 5 |
cartilaginous condensation | 1.57e-13 | 5 |
cartilage element | 1.57e-13 | 5 |
post-cranial axial skeletal system | 1.57e-13 | 5 |
vertebral column | 1.57e-13 | 5 |
intervertebral disk | 1.57e-13 | 5 |
intervertebral joint | 1.57e-13 | 5 |
mesoderm | 4.49e-12 | 315 |
mesoderm-derived structure | 4.49e-12 | 315 |
presumptive mesoderm | 4.49e-12 | 315 |
lateral plate mesoderm | 1.58e-09 | 203 |
nucleus pulposus | 1.38e-08 | 3 |
axial mesoderm | 1.38e-08 | 3 |
notochord | 1.38e-08 | 3 |
chordamesoderm | 1.38e-08 | 3 |
articulation | 2.70e-08 | 8 |
skeletal joint | 2.70e-08 | 8 |
articular system | 2.70e-08 | 8 |