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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005353
|DRA_sample_Accession=CAGE@SAMD00005353
|accession_numbers=CAGE;DRX008716;DRR009588;DRZ001013;DRZ002398
|HumanCAGEScanFiles=NCig10017;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/retina%252c%2520adult%252c%2520pool1.NCig10017.10030-101E3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/retina%252c%2520adult%252c%2520pool1.NCig10017.10030-101E3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/retina%252c%2520adult%252c%2520pool1.NCig10017.10030-101E3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/retina%252c%2520adult%252c%2520pool1.NCig10017.10030-101E3.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008716;DRR009588;DRZ001013;DRZ002398;DRZ012363;DRZ013748
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000966,UBERON:0000970,UBERON:0000019,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005388,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001802,UBERON:0004456,UBERON:0001456,UBERON:0010230
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000966,UBERON:0000970,UBERON:0000019,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005388,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001802,UBERON:0004456,UBERON:0001456,UBERON:0010230
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr19:48325184..48325211,+!p1@CRX!2.52!333.44!CRX;;chr22:38380543..38380569,-!p1@SOX10!2.31!203.14!SOX10;;chr14:24553835..24553850,-!p1@NRL!2.25!177.91!NRL;;chr14:57277178..57277203,-!p1@OTX2!2.21!159.46!OTX2;;chr3:69985734..69985749,+!p2@MITF!2.18!149.24!MITF;;chr9:77112244..77112262,+!p1@RORB!2.09!137.45!RORB;;chr7:100065686..100065701,-!p2@TSC22D4!1.92!81.27!TSC22D4;;chr12:54779511..54779577,-!p5@ZNF385A!1.91!80.41!ZNF385A;;chr17:53342311..53342400,+!p1@HLF!1.90!88.35!HLF;;chr6:1389789..1389821,+!p1@FOXF2!1.80!84.56!FOXF2;;chr11:125034640..125034655,+!p1@PKNOX2!1.73!53.04!PKNOX2;;chr13:72441315..72441454,-!p1@DACH1!1.71!97.99!DACH1;;chr2:223163706..223163730,-!p1@PAX3!1.71!49.75!PAX3;;chr4:111544219..111544240,-!p1@PITX2!1.71!49.75!PITX2;;chr11:61522844..61522875,+!p2@C11orf9!1.70!49.53!C11orf9;;chr6:10415276..10415341,-!p2@TFAP2A!1.68!57.40!TFAP2A;;chr2:182545234..182545252,-!p1@NEUROD1!1.68!47.17!NEUROD1;;chr15:72102881..72102925,+!p1@NR2E3!1.68!47.10!NR2E3;;chr19:46801639..46801699,+!p1@HIF3A!1.68!46.75!HIF3A;;chr6:10412600..10412637,-!p1@TFAP2A!1.66!73.26!TFAP2A;;chr20:62680984..62680999,-!p1@SOX18!1.66!58.54!SOX18;;chr18:56940611..56940660,-!p1@RAX!1.66!44.67!RAX;;chr19:3772220..3772236,-!p1@RAX2!1.65!44.10!RAX2;;chr2:45168875..45168916,+!p1@SIX3!1.65!43.67!SIX3;;chr14:76842457..76842494,+!p1@ESRRB!1.64!42.89!ESRRB;;chr2:45168834..45168847,+!p2@SIX3!1.63!41.81!SIX3;;chr11:31825588..31825613,-!p8@PAX6!1.63!41.24!PAX6;;chr15:42749722..42749739,-!p2@ZFP106!1.58!65.12!ZFP106;;chr22:41763452..41763466,+!p2@TEF!1.58!36.67!TEF;;chr12:26277817..26277863,-!p2@BHLHE41!1.57!48.96!BHLHE41;;chr4:111558135..111558198,-!p2@PITX2!1.57!36.52!PITX2;;chr6:391743..391759,+!p1@IRF4!1.55!34.31!IRF4;;chr2:45169193..45169219,+!p3@SIX3!1.52!32.09!SIX3;;chr5:92918919..92918942,+!p1@NR2F1!1.51!136.66!NR2F1;;chr11:31832658..31832681,-!p1@PAX6!1.51!31.45!PAX6;;chrY:21906594..21906622,-!p1@KDM5D!1.50!30.88!KDM5D;;chr2:145277882..145277967,-!p3@ZEB2!1.47!48.68!ZEB2;;chr9:126774018..126774055,+!p1@LHX2!1.46!27.95!LHX2;;chr1:197886461..197886558,+!p1@LHX9!1.45!27.45!LHX9;;chr1:40105299..40105326,-!p1@HEYL!1.45!27.09!HEYL;;chr6:10412392..10412409,-!p4@TFAP2A!1.44!30.31!TFAP2A;;chr14:57277098..57277116,-!p3@OTX2!1.43!26.09!OTX2;;chr11:61520075..61520136,+!p1@C11orf9!1.42!52.96!C11orf9;;chr5:134369879..134369898,-!p2@PITX1!1.42!25.52!PITX1;;chr1:216896752..216896778,-!p1@ESRRG!1.42!25.45!ESRRG;;chr11:31839488..31839515,-!p3@PAX6!1.42!25.23!PAX6;;chr11:16133391..16133439,-!p6@SOX6!1.42!25.16!SOX6;;chr12:26277956..26277980,-!p1@BHLHE41!1.41!85.84!BHLHE41;;chr3:25469724..25469773,+!p1@RARB!1.41!35.74!RARB;;chr19:37837218..37837237,+!p5@HKR1!1.41!24.95!HKR1;;chr3:52002194..52002250,-!p5@PCBP4!1.39!23.66!PCBP4;;chr9:114287433..114287513,+!p1@ZNF483!1.38!58.04!ZNF483;;chr12:52445218..52445237,+!p1@NR4A1!1.37!274.47!NR4A1;;chr11:113930425..113930471,+!p1@ZBTB16!1.36!31.31!ZBTB16;;chr6:10415484..10415508,-!p3@TFAP2A!1.33!20.23!TFAP2A;;chr21:39870339..39870443,-!p1@ERG!1.32!20.01!ERG;;chr17:59477233..59477263,+!p1@TBX2!1.31!58.61!TBX2;;chr3:25470156..25470227,+!p2@RARB!1.30!18.73!RARB;;chr17:38256799..38256815,-!p3@NR1D1!1.29!33.09!NR1D1;;chr5:92919100..92919135,+!p3@NR2F1!1.29!22.44!NR2F1;;chr14:74706150..74706155,+!p1@VSX2!1.29!18.30!VSX2;;chr17:7492684..7492778,-!p2@SOX15!1.28!37.38!SOX15;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.28!17.94!PEG3;;chr6:1389824..1389840,+!p3@FOXF2!1.27!17.58!FOXF2;;chr17:38256822..38256851,-!p1@NR1D1!1.25!129.94!NR1D1;;chr8:10588010..10588030,-!p1@SOX7!1.23!16.15!SOX7;;chr11:31832862..31832884,-!p2@PAX6!1.23!16.01!PAX6;;chr4:174451370..174451387,-!p1@HAND2!1.22!15.51!HAND2;;chr1:47903709..47903764,+!p1@BC169308!1.21!17.44!FOXD2;;chr1:2461692..2461710,-!p1@HES5!1.21!15.30!HES5;;chr2:180726040..180726052,-!p2@ZNF385B!1.20!14.87!ZNF385B;;chr12:54785074..54785122,-!p2@ZNF385A!1.19!22.30!ZNF385A;;chr2:166326200..166326216,+!p1@CSRNP3!1.19!21.37!CSRNP3;;chr12:125003087..125003141,-!p4@NCOR2!1.19!18.51!NCOR2;;chr4:87928413..87928433,+!p3@AFF1!1.18!86.13!AFF1;;chr16:79634624..79634642,-!p1@MAF!1.18!54.97!MAF;;chr3:114819124..114819200,-!p3@ZBTB20!1.18!32.59!ZBTB20;;chr2:63277948..63277974,+!p1@OTX1!1.18!14.01!OTX1;;chr17:59477275..59477286,+!p3@TBX2!1.17!18.51!TBX2;;chr6:50786591..50786614,+!p1@TFAP2B!1.17!13.79!TFAP2B;;chr16:67198683..67198698,+!p2@HSF4!1.17!13.72!HSF4;;chr17:53344980..53345011,+!p3@HLF!1.17!13.65!HLF;;chr6:1610293..1610310,+!p1@FOXC1!1.16!22.52!FOXC1;;chr6:126070769..126070801,+!p1@HEY2!1.16!15.37!HEY2;;chr1:170632285..170632309,+!p1@PRRX1!1.16!15.15!PRRX1;;chr11:8040739..8040815,+!p4@TUB!1.15!13.22!TUB;;chr17:53344945..53344977,+!p2@HLF!1.15!13.08!HLF;;chr19:49140609..49140643,-!p1@DBP!1.14!72.05!DBP;;chr6:1312325..1312340,+!p1@FOXQ1!1.14!20.94!FOXQ1;;chr4:81118647..81118666,+!p1@PRDM8!1.14!16.87!PRDM8;;chr1:2985760..2985774,+!p1@PRDM16!1.14!12.94!PRDM16;;chr11:47400078..47400106,-!p1@SPI1!1.14!12.72!SPI1;;chr7:63505799..63505904,+!p1@ZNF727!1.14!12.65!ZNF727;;chr5:134369905..134369972,-!p1@PITX1!1.13!19.37!PITX1;;chr12:26277929..26277955,-!p3@BHLHE41!1.13!17.94!BHLHE41;;chr11:125034605..125034636,+!p2@PKNOX2!1.13!12.58!PKNOX2;;chr16:67198633..67198671,+!p1@HSF4!1.13!12.37!HSF4;;chr12:55413751..55413765,+!p1@NEUROD4!1.12!12.15!NEUROD4;;chr19:3772263..3772274,-!p2@RAX2!1.12!12.08!RAX2;;chr3:52001448..52001478,-!p2@PCBP4!1.11!165.54!PCBP4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.11!12.72!GLIS1;;chr2:45169233..45169244,+!p10@SIX3!1.11!12.01!SIX3;;chr3:69985792..69985803,+!p7@MITF!1.11!11.87!MITF;;chr14:24551143..24551178,-!p6@NRL!1.11!11.87!NRL;;chr5:71803177..71803255,-!p1@ZNF366!1.10!11.58!ZNF366;;chr1:214161272..214161322,+!p1@PROX1!1.09!16.08!PROX1;;chr1:165414325..165414369,-!p1@RXRG!1.09!11.29!RXRG;;chr21:47063625..47063658,+!p1@PCBP3!1.08!48.10!PCBP3;;chr8:80679993..80680011,-!p1@HEY1!1.07!15.87!HEY1;;chr16:85932760..85932775,+!p1@IRF8!1.07!10.72!IRF8;;chr7:44143925..44143970,+!p1@AEBP1!1.06!236.02!AEBP1;;chr1:10856639..10856662,-!p2@CASZ1!1.06!10.51!CASZ1;;chr11:113930291..113930339,+!p2@ZBTB16!1.05!16.87!ZBTB16;;chr19:38085768..38085821,+!p1@ZNF540!1.04!15.22!ZNF540;;chr9:126773880..126773895,+!p2@LHX2!1.04!10.08!LHX2;;chr11:31832807..31832823,-!p4@PAX6!1.04!10.08!PAX6;;chr9:129376233..129376251,+!p2@LMX1B!1.04!9.86!LMX1B;;chr5:158526917..158526932,-!p1@EBF1!1.03!24.52!EBF1;;chr3:114866084..114866118,-!p2@ZBTB20!1.02!34.95!ZBTB20;;chr2:71127699..71127744,+!p1@VAX2!1.02!19.58!VAX2;;chr3:126076242..126076257,-!p1@KLF15!1.02!11.79!KLF15;;chr4:149363494..149363543,-!p1@NR3C2!1.02!9.36!NR3C2;;chrX:101186981..101187030,-!p1@ZMAT1!1.01!30.73!ZMAT1;;chr8:55370487..55370503,+!p1@SOX17!1.01!9.22!SOX17;;chr6:10412576..10412599,-!p5@TFAP2A!1.01!9.15!TFAP2A;;chr4:111563076..111563124,-!p8@PITX2!1.01!9.15!PITX2;;chr1:61548069..61548102,+!p3@NFIA!1.00!22.44!NFIA;;chr2:45169143..45169167,+!p5@SIX3!1.00!9.08!SIX3;;chr17:70117153..70117174,+!p1@SOX9!0.99!92.13!SOX9;;chr15:61521417..61521460,-!p2@RORA!0.99!19.94!RORA;;chr3:126076264..126076305,-!p2@KLF15!0.99!12.37!KLF15;;chr19:46800289..46800327,+!p2@HIF3A!0.99!8.86!HIF3A;;chr9:126774058..126774081,+!p3@LHX2!0.99!8.72!LHX2;;chr1:170633348..170633399,+!p2@PRRX1!0.98!11.65!PRRX1;;chr5:92919068..92919082,+!p5@NR2F1!0.98!10.29!NR2F1;;chr3:128212033..128212051,-!p1@GATA2!0.98!8.58!GATA2;;chr10:119302232..119302265,+!p1@EMX2!0.98!8.58!EMX2;;chr16:79633894..79633954,-!p3@MAF!0.97!16.23!MAF;;chr16:79634595..79634620,-!p2@MAF!0.97!15.37!MAF;;chr5:92918956..92918969,+!p4@NR2F1!0.97!9.22!NR2F1;;chr3:181429704..181429722,+!p1@SOX2!0.97!8.36!SOX2;;chr19:16435625..16435682,+!p1@KLF2!0.96!266.46!KLF2;;chr17:59477197..59477212,+!p2@TBX2!0.96!14.22!TBX2;;chr1:10754477..10754517,-!p1@CASZ1!0.96!13.58!CASZ1;;chr12:54785054..54785072,-!p4@ZNF385A!0.96!9.29!ZNF385A;;chr7:35293685..35293718,-!p1@TBX20!0.96!8.22!TBX20;;chr2:45168856..45168867,+!p7@SIX3!0.96!8.15!SIX3;;chr13:72441074..72441172,-!p2@DACH1!0.96!8.08!DACH1;;chr6:1389989..1390019,+!p2@FOXF2!0.95!7.93!FOXF2;;chr2:88752207..88752218,-!p1@FOXI3!0.95!7.86!FOXI3;;chr2:46524897..46524911,+!p2@EPAS1!0.94!22.23!EPAS1;;chr1:61548374..61548415,+!p4@NFIA!0.94!14.80!NFIA;;chr13:100634031..100634045,+!p1@ZIC2!0.94!7.79!ZIC2;;chr11:125034586..125034604,+!p3@PKNOX2!0.94!7.72!PKNOX2;;chr5:88178983..88179012,-!p1@MEF2C!0.93!60.04!MEF2C;;chr16:86600426..86600441,+!p1@FOXC2!0.93!18.94!FOXC2;;chr7:44143978..44143989,+!p2@AEBP1!0.93!14.22!AEBP1;;chr18:42260840..42260860,+!p2@SETBP1!0.93!7.51!SETBP1;;chr2:63277978..63277995,+!p2@OTX1!0.92!7.29!OTX1;;chr9:102584159..102584174,+!p2@NR4A3!0.91!13.15!NR4A3;;chr19:49140572..49140594,-!p2@DBP!0.91!11.51!DBP;;chr3:42947600..42947680,+!p1@ZNF662!0.91!10.51!ZNF662;;chr2:68592406..68592424,+!p1@PLEK!0.91!7.22!PLEK;;chr8:40755333..40755352,-!p1@ZMAT4!0.91!7.08!ZMAT4;;chr20:25062773..25062779,-!p3@VSX1!0.91!7.08!VSX1;;chr2:45168997..45169020,+!p4@SIX3!0.90!7.00!SIX3;;chr3:25469815..25469866,+!p3@RARB!0.90!7.00!RARB;;chr15:53082521..53082549,-!p1@ONECUT1!0.90!6.93!ONECUT1;;chr11:31832610..31832639,-!p5@PAX6!0.90!6.93!PAX6;;chr3:193853927..193853944,+!p1@HES1!0.89!232.30!HES1;;chr19:45971246..45971265,+!p1@FOSB!0.89!132.59!FOSB;;chr7:149470641..149470694,-!p1@ZNF467!0.89!32.09!ZNF467;;chr10:111987079..111987115,+!p3@MXI1!0.89!9.36!MXI1;;chr5:92918768..92918783,+!p8@NR2F1!0.89!6.79!NR2F1;;chr3:21792682..21792720,-!p1@ZNF385D!0.89!6.79!ZNF385D;;chr3:69986115..69986119,+!p12@MITF!0.89!6.72!MITF;;chr11:113930401..113930422,+!p3@ZBTB16!0.89!6.72!ZBTB16;;chr5:92918894..92918912,+!p2@NR2F1!0.88!22.59!NR2F1;;chr1:61547894..61547968,+!p2@NFIA!0.88!20.01!NFIA;;chr12:24715376..24715432,-!p1@SOX5!0.88!8.36!SOX5;;chr4:149363544..149363583,-!p3@NR3C2!0.88!7.72!NR3C2;;chr2:45236540..45236577,-!p1@SIX2!0.88!6.65!SIX2;;chr4:54966328..54966335,+!p1@GSX2!0.88!6.65!GSX2;;chr1:10856665..10856683,-!p4@CASZ1!0.88!6.65!CASZ1;;chr4:8873545..8873583,-!p1@HMX1!0.88!6.58!HMX1;;chr18:52989031..52989079,-!p2@TCF4!0.87!15.65!TCF4;;chr7:113726357..113726443,+!p1@FOXP2!0.87!11.51!FOXP2;;chr20: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|expression_enrichment_score=chr19:48325184..48325211,+!p1@CRX!2.52!333.44!CRX;;chr22:38380543..38380569,-!p1@SOX10!2.31!203.14!SOX10;;chr14:24553835..24553850,-!p1@NRL!2.25!177.91!NRL;;chr14:57277178..57277203,-!p1@OTX2!2.21!159.46!OTX2;;chr3:69985734..69985749,+!p2@MITF!2.18!149.24!MITF;;chr9:77112244..77112262,+!p1@RORB!2.09!137.45!RORB;;chr7:100065686..100065701,-!p2@TSC22D4!1.92!81.27!TSC22D4;;chr12:54779511..54779577,-!p5@ZNF385A!1.91!80.41!ZNF385A;;chr17:53342311..53342400,+!p1@HLF!1.90!88.35!HLF;;chr6:1389789..1389821,+!p1@FOXF2!1.80!84.56!FOXF2;;chr11:125034640..125034655,+!p1@PKNOX2!1.73!53.04!PKNOX2;;chr13:72441315..72441454,-!p1@DACH1!1.71!97.99!DACH1;;chr2:223163706..223163730,-!p1@PAX3!1.71!49.75!PAX3;;chr4:111544219..111544240,-!p1@PITX2!1.71!49.75!PITX2;;chr11:61522844..61522875,+!p2@C11orf9!1.70!49.53!C11orf9;;chr6:10415276..10415341,-!p2@TFAP2A!1.68!57.40!TFAP2A;;chr2:182545234..182545252,-!p1@NEUROD1!1.68!47.17!NEUROD1;;chr15:72102881..72102925,+!p1@NR2E3!1.68!47.10!NR2E3;;chr19:46801639..46801699,+!p1@HIF3A!1.68!46.75!HIF3A;;chr6:10412600..10412637,-!p1@TFAP2A!1.66!73.26!TFAP2A;;chr20:62680984..62680999,-!p1@SOX18!1.66!58.54!SOX18;;chr18:56940611..56940660,-!p1@RAX!1.66!44.67!RAX;;chr19:3772220..3772236,-!p1@RAX2!1.65!44.10!RAX2;;chr2:45168875..45168916,+!p1@SIX3!1.65!43.67!SIX3;;chr14:76842457..76842494,+!p1@ESRRB!1.64!42.89!ESRRB;;chr2:45168834..45168847,+!p2@SIX3!1.63!41.81!SIX3;;chr11:31825588..31825613,-!p8@PAX6!1.63!41.24!PAX6;;chr15:42749722..42749739,-!p2@ZFP106!1.58!65.12!ZFP106;;chr22:41763452..41763466,+!p2@TEF!1.58!36.67!TEF;;chr12:26277817..26277863,-!p2@BHLHE41!1.57!48.96!BHLHE41;;chr4:111558135..111558198,-!p2@PITX2!1.57!36.52!PITX2;;chr6:391743..391759,+!p1@IRF4!1.55!34.31!IRF4;;chr2:45169193..45169219,+!p3@SIX3!1.52!32.09!SIX3;;chr5:92918919..92918942,+!p1@NR2F1!1.51!136.66!NR2F1;;chr11:31832658..31832681,-!p1@PAX6!1.51!31.45!PAX6;;chrY:21906594..21906622,-!p1@KDM5D!1.50!30.88!KDM5D;;chr2:145277882..145277967,-!p3@ZEB2!1.47!48.68!ZEB2;;chr9:126774018..126774055,+!p1@LHX2!1.46!27.95!LHX2;;chr1:197886461..197886558,+!p1@LHX9!1.45!27.45!LHX9;;chr1:40105299..40105326,-!p1@HEYL!1.45!27.09!HEYL;;chr6:10412392..10412409,-!p4@TFAP2A!1.44!30.31!TFAP2A;;chr14:57277098..57277116,-!p3@OTX2!1.43!26.09!OTX2;;chr11:61520075..61520136,+!p1@C11orf9!1.42!52.96!C11orf9;;chr5:134369879..134369898,-!p2@PITX1!1.42!25.52!PITX1;;chr1:216896752..216896778,-!p1@ESRRG!1.42!25.45!ESRRG;;chr11:31839488..31839515,-!p3@PAX6!1.42!25.23!PAX6;;chr11:16133391..16133439,-!p6@SOX6!1.42!25.16!SOX6;;chr12:26277956..26277980,-!p1@BHLHE41!1.41!85.84!BHLHE41;;chr3:25469724..25469773,+!p1@RARB!1.41!35.74!RARB;;chr19:37837218..37837237,+!p5@HKR1!1.41!24.95!HKR1;;chr3:52002194..52002250,-!p5@PCBP4!1.39!23.66!PCBP4;;chr9:114287433..114287513,+!p1@ZNF483!1.38!58.04!ZNF483;;chr12:52445218..52445237,+!p1@NR4A1!1.37!274.47!NR4A1;;chr11:113930425..113930471,+!p1@ZBTB16!1.36!31.31!ZBTB16;;chr6:10415484..10415508,-!p3@TFAP2A!1.33!20.23!TFAP2A;;chr21:39870339..39870443,-!p1@ERG!1.32!20.01!ERG;;chr17:59477233..59477263,+!p1@TBX2!1.31!58.61!TBX2;;chr3:25470156..25470227,+!p2@RARB!1.30!18.73!RARB;;chr17:38256799..38256815,-!p3@NR1D1!1.29!33.09!NR1D1;;chr5:92919100..92919135,+!p3@NR2F1!1.29!22.44!NR2F1;;chr14:74706150..74706155,+!p1@VSX2!1.29!18.30!VSX2;;chr17:7492684..7492778,-!p2@SOX15!1.28!37.38!SOX15;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.28!17.94!PEG3;;chr6:1389824..1389840,+!p3@FOXF2!1.27!17.58!FOXF2;;chr17:38256822..38256851,-!p1@NR1D1!1.25!129.94!NR1D1;;chr8:10588010..10588030,-!p1@SOX7!1.23!16.15!SOX7;;chr11:31832862..31832884,-!p2@PAX6!1.23!16.01!PAX6;;chr4:174451370..174451387,-!p1@HAND2!1.22!15.51!HAND2;;chr1:47903709..47903764,+!p1@BC169308!1.21!17.44!FOXD2;;chr1:2461692..2461710,-!p1@HES5!1.21!15.30!HES5;;chr2:180726040..180726052,-!p2@ZNF385B!1.20!14.87!ZNF385B;;chr12:54785074..54785122,-!p2@ZNF385A!1.19!22.30!ZNF385A;;chr2:166326200..166326216,+!p1@CSRNP3!1.19!21.37!CSRNP3;;chr12:125003087..125003141,-!p4@NCOR2!1.19!18.51!NCOR2;;chr4:87928413..87928433,+!p3@AFF1!1.18!86.13!AFF1;;chr16:79634624..79634642,-!p1@MAF!1.18!54.97!MAF;;chr3:114819124..114819200,-!p3@ZBTB20!1.18!32.59!ZBTB20;;chr2:63277948..63277974,+!p1@OTX1!1.18!14.01!OTX1;;chr17:59477275..59477286,+!p3@TBX2!1.17!18.51!TBX2;;chr6:50786591..50786614,+!p1@TFAP2B!1.17!13.79!TFAP2B;;chr16:67198683..67198698,+!p2@HSF4!1.17!13.72!HSF4;;chr17:53344980..53345011,+!p3@HLF!1.17!13.65!HLF;;chr6:1610293..1610310,+!p1@FOXC1!1.16!22.52!FOXC1;;chr6:126070769..126070801,+!p1@HEY2!1.16!15.37!HEY2;;chr1:170632285..170632309,+!p1@PRRX1!1.16!15.15!PRRX1;;chr11:8040739..8040815,+!p4@TUB!1.15!13.22!TUB;;chr17:53344945..53344977,+!p2@HLF!1.15!13.08!HLF;;chr19:49140609..49140643,-!p1@DBP!1.14!72.05!DBP;;chr6:1312325..1312340,+!p1@FOXQ1!1.14!20.94!FOXQ1;;chr4:81118647..81118666,+!p1@PRDM8!1.14!16.87!PRDM8;;chr1:2985760..2985774,+!p1@PRDM16!1.14!12.94!PRDM16;;chr11:47400078..47400106,-!p1@SPI1!1.14!12.72!SPI1;;chr7:63505799..63505904,+!p1@ZNF727!1.14!12.65!ZNF727;;chr5:134369905..134369972,-!p1@PITX1!1.13!19.37!PITX1;;chr12:26277929..26277955,-!p3@BHLHE41!1.13!17.94!BHLHE41;;chr11:125034605..125034636,+!p2@PKNOX2!1.13!12.58!PKNOX2;;chr16:67198633..67198671,+!p1@HSF4!1.13!12.37!HSF4;;chr12:55413751..55413765,+!p1@NEUROD4!1.12!12.15!NEUROD4;;chr19:3772263..3772274,-!p2@RAX2!1.12!12.08!RAX2;;chr3:52001448..52001478,-!p2@PCBP4!1.11!165.54!PCBP4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.11!12.72!GLIS1;;chr2:45169233..45169244,+!p10@SIX3!1.11!12.01!SIX3;;chr3:69985792..69985803,+!p7@MITF!1.11!11.87!MITF;;chr14:24551143..24551178,-!p6@NRL!1.11!11.87!NRL;;chr5:71803177..71803255,-!p1@ZNF366!1.10!11.58!ZNF366;;chr1:214161272..214161322,+!p1@PROX1!1.09!16.08!PROX1;;chr1:165414325..165414369,-!p1@RXRG!1.09!11.29!RXRG;;chr21:47063625..47063658,+!p1@PCBP3!1.08!48.10!PCBP3;;chr8:80679993..80680011,-!p1@HEY1!1.07!15.87!HEY1;;chr16:85932760..85932775,+!p1@IRF8!1.07!10.72!IRF8;;chr7:44143925..44143970,+!p1@AEBP1!1.06!236.02!AEBP1;;chr1:10856639..10856662,-!p2@CASZ1!1.06!10.51!CASZ1;;chr11:113930291..113930339,+!p2@ZBTB16!1.05!16.87!ZBTB16;;chr19:38085768..38085821,+!p1@ZNF540!1.04!15.22!ZNF540;;chr9:126773880..126773895,+!p2@LHX2!1.04!10.08!LHX2;;chr11:31832807..31832823,-!p4@PAX6!1.04!10.08!PAX6;;chr9:129376233..129376251,+!p2@LMX1B!1.04!9.86!LMX1B;;chr5:158526917..158526932,-!p1@EBF1!1.03!24.52!EBF1;;chr3:114866084..114866118,-!p2@ZBTB20!1.02!34.95!ZBTB20;;chr2:71127699..71127744,+!p1@VAX2!1.02!19.58!VAX2;;chr3:126076242..126076257,-!p1@KLF15!1.02!11.79!KLF15;;chr4:149363494..149363543,-!p1@NR3C2!1.02!9.36!NR3C2;;chrX:101186981..101187030,-!p1@ZMAT1!1.01!30.73!ZMAT1;;chr8:55370487..55370503,+!p1@SOX17!1.01!9.22!SOX17;;chr6:10412576..10412599,-!p5@TFAP2A!1.01!9.15!TFAP2A;;chr4:111563076..111563124,-!p8@PITX2!1.01!9.15!PITX2;;chr1:61548069..61548102,+!p3@NFIA!1.00!22.44!NFIA;;chr2:45169143..45169167,+!p5@SIX3!1.00!9.08!SIX3;;chr17:70117153..70117174,+!p1@SOX9!0.99!92.13!SOX9;;chr15:61521417..61521460,-!p2@RORA!0.99!19.94!RORA;;chr3:126076264..126076305,-!p2@KLF15!0.99!12.37!KLF15;;chr19:46800289..46800327,+!p2@HIF3A!0.99!8.86!HIF3A;;chr9:126774058..126774081,+!p3@LHX2!0.99!8.72!LHX2;;chr1:170633348..170633399,+!p2@PRRX1!0.98!11.65!PRRX1;;chr5:92919068..92919082,+!p5@NR2F1!0.98!10.29!NR2F1;;chr3:128212033..128212051,-!p1@GATA2!0.98!8.58!GATA2;;chr10:119302232..119302265,+!p1@EMX2!0.98!8.58!EMX2;;chr16:79633894..79633954,-!p3@MAF!0.97!16.23!MAF;;chr16:79634595..79634620,-!p2@MAF!0.97!15.37!MAF;;chr5:92918956..92918969,+!p4@NR2F1!0.97!9.22!NR2F1;;chr3:181429704..181429722,+!p1@SOX2!0.97!8.36!SOX2;;chr19:16435625..16435682,+!p1@KLF2!0.96!266.46!KLF2;;chr17:59477197..59477212,+!p2@TBX2!0.96!14.22!TBX2;;chr1:10754477..10754517,-!p1@CASZ1!0.96!13.58!CASZ1;;chr12:54785054..54785072,-!p4@ZNF385A!0.96!9.29!ZNF385A;;chr7:35293685..35293718,-!p1@TBX20!0.96!8.22!TBX20;;chr2:45168856..45168867,+!p7@SIX3!0.96!8.15!SIX3;;chr13:72441074..72441172,-!p2@DACH1!0.96!8.08!DACH1;;chr6:1389989..1390019,+!p2@FOXF2!0.95!7.93!FOXF2;;chr2:88752207..88752218,-!p1@FOXI3!0.95!7.86!FOXI3;;chr2:46524897..46524911,+!p2@EPAS1!0.94!22.23!EPAS1;;chr1:61548374..61548415,+!p4@NFIA!0.94!14.80!NFIA;;chr13:100634031..100634045,+!p1@ZIC2!0.94!7.79!ZIC2;;chr11:125034586..125034604,+!p3@PKNOX2!0.94!7.72!PKNOX2;;chr5:88178983..88179012,-!p1@MEF2C!0.93!60.04!MEF2C;;chr16:86600426..86600441,+!p1@FOXC2!0.93!18.94!FOXC2;;chr7:44143978..44143989,+!p2@AEBP1!0.93!14.22!AEBP1;;chr18:42260840..42260860,+!p2@SETBP1!0.93!7.51!SETBP1;;chr2:63277978..63277995,+!p2@OTX1!0.92!7.29!OTX1;;chr9:102584159..102584174,+!p2@NR4A3!0.91!13.15!NR4A3;;chr19:49140572..49140594,-!p2@DBP!0.91!11.51!DBP;;chr3:42947600..42947680,+!p1@ZNF662!0.91!10.51!ZNF662;;chr2:68592406..68592424,+!p1@PLEK!0.91!7.22!PLEK;;chr8:40755333..40755352,-!p1@ZMAT4!0.91!7.08!ZMAT4;;chr20:25062773..25062779,-!p3@VSX1!0.91!7.08!VSX1;;chr2:45168997..45169020,+!p4@SIX3!0.90!7.00!SIX3;;chr3:25469815..25469866,+!p3@RARB!0.90!7.00!RARB;;chr15:53082521..53082549,-!p1@ONECUT1!0.90!6.93!ONECUT1;;chr11:31832610..31832639,-!p5@PAX6!0.90!6.93!PAX6;;chr3:193853927..193853944,+!p1@HES1!0.89!232.30!HES1;;chr19:45971246..45971265,+!p1@FOSB!0.89!132.59!FOSB;;chr7:149470641..149470694,-!p1@ZNF467!0.89!32.09!ZNF467;;chr10:111987079..111987115,+!p3@MXI1!0.89!9.36!MXI1;;chr5:92918768..92918783,+!p8@NR2F1!0.89!6.79!NR2F1;;chr3:21792682..21792720,-!p1@ZNF385D!0.89!6.79!ZNF385D;;chr3:69986115..69986119,+!p12@MITF!0.89!6.72!MITF;;chr11:113930401..113930422,+!p3@ZBTB16!0.89!6.72!ZBTB16;;chr5:92918894..92918912,+!p2@NR2F1!0.88!22.59!NR2F1;;chr1:61547894..61547968,+!p2@NFIA!0.88!20.01!NFIA;;chr12:24715376..24715432,-!p1@SOX5!0.88!8.36!SOX5;;chr4:149363544..149363583,-!p3@NR3C2!0.88!7.72!NR3C2;;chr2:45236540..45236577,-!p1@SIX2!0.88!6.65!SIX2;;chr4:54966328..54966335,+!p1@GSX2!0.88!6.65!GSX2;;chr1:10856665..10856683,-!p4@CASZ1!0.88!6.65!CASZ1;;chr4:8873545..8873583,-!p1@HMX1!0.88!6.58!HMX1;;chr18:52989031..52989079,-!p2@TCF4!0.87!15.65!TCF4;;chr7:113726357..113726443,+!p1@FOXP2!0.87!11.51!FOXP2;;chr20: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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000966;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0003056,UBERON:0010316
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0003056,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 43:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg38.nobarcode.ctss.bed.gz
|id=FF:10030-101E3
|id=FF:10030-101E3
|is_a=EFO:0002091;;FF:0010030
|is_a=EFO:0002091;;FF:0010030
|is_obsolete=
|is_obsolete=
|library_id=CNhs10636
|library_id=CNhs10636
|library_id_phase_based=1:CNhs10636
|library_id_phase_based=2:CNhs10636
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10030
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10030
|name=retina, adult, pool1
|name=retina, adult, pool1
|namespace=FANTOM5
|namespace=FANTOM5
Line 51: Line 62:
|profile_cagescan=NCig10017,,,
|profile_cagescan=NCig10017,,,
|profile_hcage=CNhs10636,LSID657,release008,COMPLETED
|profile_hcage=CNhs10636,LSID657,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 65: Line 77:
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|sample_age=
Line 90: Line 102:
|top_motifs=CRX:9.07627337135;HOX{A6,A7,B6,B7}:6.26537821853;NANOG:4.71346570951;VSX1,2:4.52236161163;RORA:3.71008619373;RBPJ:2.71040935513;MAZ:2.62969571553;NFIL3:2.62184421026;PATZ1:2.52055298019;SP1:2.4191480629;HIC1:2.41661931717;ESRRA:2.41459521875;PAX6:2.38736924408;ADNP_IRX_SIX_ZHX:2.2817551272;MTF1:2.26879842113;TFAP2{A,C}:2.24024906204;GTF2A1,2:2.2205272432;MED-1{core}:2.20921158657;GTF2I:2.20078519594;TFAP2B:2.18948724369;PRDM1:2.11627929905;NKX3-2:2.08395395147;MYFfamily:2.04109027498;RREB1:1.9943251761;TLX1..3_NFIC{dimer}:1.99016003301;PAX5:1.96031225207;MTE{core}:1.91683491024;RXR{A,B,G}:1.85223596027;PRRX1,2:1.78592854059;MZF1:1.78248352401;SOX5:1.77465613723;SMAD1..7,9:1.76919664961;EGR1..3:1.76885670878;PAX1,9:1.76614522288;ZFP161:1.69904918442;REST:1.67894115171;EBF1:1.63606951281;SREBF1,2:1.5433300481;EP300:1.53992995883;XCPE1{core}:1.51392670069;BREu{core}:1.50436973388;SPZ1:1.49296811385;MEF2{A,B,C,D}:1.48649549694;TFCP2:1.46514121792;GCM1,2:1.45850534122;TGIF1:1.41089135318;ZNF423:1.37475969791;HAND1,2:1.35977396178;TFAP4:1.33268473523;GFI1:1.32075788644;ATF2:1.31081348154;SOX2:1.28672385173;GFI1B:1.25940956227;ZIC1..3:1.23248750532;NR5A1,2:1.15955861949;FOXM1:1.13392024978;TBP:1.0285374586;AHR_ARNT_ARNT2:1.02713340968;NHLH1,2:1.02263607565;ZNF238:0.962739627972;TLX2:0.962056684548;FOX{I1,J2}:0.961713704595;MYBL2:0.959117125459;SRF:0.956599143384;FOX{D1,D2}:0.937244192395;IKZF1:0.935036641764;HBP1_HMGB_SSRP1_UBTF:0.902743378376;TAL1_TCF{3,4,12}:0.898442607246;CDC5L:0.889168629566;KLF4:0.816211850387;ZBTB6:0.812522986228;RFX1:0.802791004684;JUN:0.794621069051;PITX1..3:0.767328816844;ALX4:0.708214701198;AR:0.701582423204;bHLH_family:0.701535983314;GATA4:0.698773164359;SOX{8,9,10}:0.695032173122;RFX2..5_RFXANK_RFXAP:0.645752445073;MYOD1:0.610188948155;NFATC1..3:0.607493529397;GLI1..3:0.606682288171;POU5F1:0.597258397409;FOXO1,3,4:0.561245988407;BPTF:0.548297926275;T:0.543617201349;STAT1,3:0.519573249031;HMX1:0.499708001993;LMO2:0.485808206599;HSF1,2:0.477563935277;TEAD1:0.457197696475;NKX2-1,4:0.443058143223;POU6F1:0.436761111547;NFE2L1:0.375884441022;TOPORS:0.352548163944;CUX2:0.343509525453;NR3C1:0.339374522097;FOXP1:0.331044060729;POU2F1..3:0.327976338382;CREB1:0.304311225914;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.303466688676;IRF7:0.295170632283;SNAI1..3:0.288993393205;ESR1:0.281197043869;IRF1,2:0.260412703778;POU3F1..4:0.246852690362;NRF1:0.220730792756;STAT2,4,6:0.205467569854;FOXA2:0.201599225296;NFY{A,B,C}:0.176870270888;RXRA_VDR{dimer}:0.175224676224;MAFB:0.171151498477;ZNF143:0.157529992766;SOX17:0.155815163703;NKX6-1,2:0.150209351013;FOXN1:0.133120925874;PAX2:0.0800658263116;ZEB1:0.0660723230275;FOX{F1,F2,J1}:0.0511231584478;GZF1:0.0312868162715;NKX2-3_NKX2-5:0.00870153994246;ZNF148:-0.0129705341135;SPIB:-0.0262270432349;HNF4A_NR2F1,2:-0.0265121179229;GATA6:-0.0475172008987;HNF1A:-0.0704561923928;PPARG:-0.0723299839723;ETS1,2:-0.0963931346652;TBX4,5:-0.118484751606;TFDP1:-0.130734329519;XBP1:-0.138996689559;NFIX:-0.14402879917;OCT4_SOX2{dimer}:-0.202637868383;ATF6:-0.204604640792;NR1H4:-0.212848323744;FOXP3:-0.224269887993;SPI1:-0.246078920368;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.267416577821;ATF4:-0.277593301252;LHX3,4:-0.281993165807;NANOG{mouse}:-0.288024054312;ATF5_CREB3:-0.327528093753;PDX1:-0.328964835411;IKZF2:-0.34317141255;PAX3,7:-0.349198975065;DBP:-0.39430004186;TEF:-0.443239927789;HIF1A:-0.457424282765;FOXQ1:-0.463083694451;ALX1:-0.467225890762;NKX3-1:-0.477133562091;HES1:-0.48761952996;ZNF384:-0.523833570641;NFE2:-0.530504554714;HOX{A4,D4}:-0.57852222226;ARID5B:-0.640586969424;CEBPA,B_DDIT3:-0.642281873827;NFE2L2:-0.654446982757;ELF1,2,4:-0.658028029674;LEF1_TCF7_TCF7L1,2:-0.707684006687;RUNX1..3:-0.719504052459;NR6A1:-0.725238911007;YY1:-0.745459907999;AIRE:-0.753990172033;NFKB1_REL_RELA:-0.770693756753;FOXL1:-0.781221531489;PBX1:-0.794077757712;TP53:-0.897235118121;HLF:-0.905023603757;FOSL2:-0.92724280099;EN1,2:-0.995923832533;UFEwm:-1.01142676528;E2F1..5:-1.03238661313;ELK1,4_GABP{A,B1}:-1.04996023832;BACH2:-1.07022780369;EVI1:-1.10690406925;FOS_FOS{B,L1}_JUN{B,D}:-1.13686625347;FOXD3:-1.21694124153;DMAP1_NCOR{1,2}_SMARC:-1.29830050971;HMGA1,2:-1.36130311772;POU1F1:-1.40636223517;ZBTB16:-1.52762182842;PAX8:-1.67313441595;HOX{A5,B5}:-1.73639139297;STAT5{A,B}:-1.82180051909;HOXA9_MEIS1:-1.90423036749;MYB:-1.91005452052;NKX2-2,8:-2.09219976929;ONECUT1,2:-2.17325263978;CDX1,2,4:-2.31454008674;PAX4:-2.33609650536
|top_motifs=CRX:9.07627337135;HOX{A6,A7,B6,B7}:6.26537821853;NANOG:4.71346570951;VSX1,2:4.52236161163;RORA:3.71008619373;RBPJ:2.71040935513;MAZ:2.62969571553;NFIL3:2.62184421026;PATZ1:2.52055298019;SP1:2.4191480629;HIC1:2.41661931717;ESRRA:2.41459521875;PAX6:2.38736924408;ADNP_IRX_SIX_ZHX:2.2817551272;MTF1:2.26879842113;TFAP2{A,C}:2.24024906204;GTF2A1,2:2.2205272432;MED-1{core}:2.20921158657;GTF2I:2.20078519594;TFAP2B:2.18948724369;PRDM1:2.11627929905;NKX3-2:2.08395395147;MYFfamily:2.04109027498;RREB1:1.9943251761;TLX1..3_NFIC{dimer}:1.99016003301;PAX5:1.96031225207;MTE{core}:1.91683491024;RXR{A,B,G}:1.85223596027;PRRX1,2:1.78592854059;MZF1:1.78248352401;SOX5:1.77465613723;SMAD1..7,9:1.76919664961;EGR1..3:1.76885670878;PAX1,9:1.76614522288;ZFP161:1.69904918442;REST:1.67894115171;EBF1:1.63606951281;SREBF1,2:1.5433300481;EP300:1.53992995883;XCPE1{core}:1.51392670069;BREu{core}:1.50436973388;SPZ1:1.49296811385;MEF2{A,B,C,D}:1.48649549694;TFCP2:1.46514121792;GCM1,2:1.45850534122;TGIF1:1.41089135318;ZNF423:1.37475969791;HAND1,2:1.35977396178;TFAP4:1.33268473523;GFI1:1.32075788644;ATF2:1.31081348154;SOX2:1.28672385173;GFI1B:1.25940956227;ZIC1..3:1.23248750532;NR5A1,2:1.15955861949;FOXM1:1.13392024978;TBP:1.0285374586;AHR_ARNT_ARNT2:1.02713340968;NHLH1,2:1.02263607565;ZNF238:0.962739627972;TLX2:0.962056684548;FOX{I1,J2}:0.961713704595;MYBL2:0.959117125459;SRF:0.956599143384;FOX{D1,D2}:0.937244192395;IKZF1:0.935036641764;HBP1_HMGB_SSRP1_UBTF:0.902743378376;TAL1_TCF{3,4,12}:0.898442607246;CDC5L:0.889168629566;KLF4:0.816211850387;ZBTB6:0.812522986228;RFX1:0.802791004684;JUN:0.794621069051;PITX1..3:0.767328816844;ALX4:0.708214701198;AR:0.701582423204;bHLH_family:0.701535983314;GATA4:0.698773164359;SOX{8,9,10}:0.695032173122;RFX2..5_RFXANK_RFXAP:0.645752445073;MYOD1:0.610188948155;NFATC1..3:0.607493529397;GLI1..3:0.606682288171;POU5F1:0.597258397409;FOXO1,3,4:0.561245988407;BPTF:0.548297926275;T:0.543617201349;STAT1,3:0.519573249031;HMX1:0.499708001993;LMO2:0.485808206599;HSF1,2:0.477563935277;TEAD1:0.457197696475;NKX2-1,4:0.443058143223;POU6F1:0.436761111547;NFE2L1:0.375884441022;TOPORS:0.352548163944;CUX2:0.343509525453;NR3C1:0.339374522097;FOXP1:0.331044060729;POU2F1..3:0.327976338382;CREB1:0.304311225914;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.303466688676;IRF7:0.295170632283;SNAI1..3:0.288993393205;ESR1:0.281197043869;IRF1,2:0.260412703778;POU3F1..4:0.246852690362;NRF1:0.220730792756;STAT2,4,6:0.205467569854;FOXA2:0.201599225296;NFY{A,B,C}:0.176870270888;RXRA_VDR{dimer}:0.175224676224;MAFB:0.171151498477;ZNF143:0.157529992766;SOX17:0.155815163703;NKX6-1,2:0.150209351013;FOXN1:0.133120925874;PAX2:0.0800658263116;ZEB1:0.0660723230275;FOX{F1,F2,J1}:0.0511231584478;GZF1:0.0312868162715;NKX2-3_NKX2-5:0.00870153994246;ZNF148:-0.0129705341135;SPIB:-0.0262270432349;HNF4A_NR2F1,2:-0.0265121179229;GATA6:-0.0475172008987;HNF1A:-0.0704561923928;PPARG:-0.0723299839723;ETS1,2:-0.0963931346652;TBX4,5:-0.118484751606;TFDP1:-0.130734329519;XBP1:-0.138996689559;NFIX:-0.14402879917;OCT4_SOX2{dimer}:-0.202637868383;ATF6:-0.204604640792;NR1H4:-0.212848323744;FOXP3:-0.224269887993;SPI1:-0.246078920368;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.267416577821;ATF4:-0.277593301252;LHX3,4:-0.281993165807;NANOG{mouse}:-0.288024054312;ATF5_CREB3:-0.327528093753;PDX1:-0.328964835411;IKZF2:-0.34317141255;PAX3,7:-0.349198975065;DBP:-0.39430004186;TEF:-0.443239927789;HIF1A:-0.457424282765;FOXQ1:-0.463083694451;ALX1:-0.467225890762;NKX3-1:-0.477133562091;HES1:-0.48761952996;ZNF384:-0.523833570641;NFE2:-0.530504554714;HOX{A4,D4}:-0.57852222226;ARID5B:-0.640586969424;CEBPA,B_DDIT3:-0.642281873827;NFE2L2:-0.654446982757;ELF1,2,4:-0.658028029674;LEF1_TCF7_TCF7L1,2:-0.707684006687;RUNX1..3:-0.719504052459;NR6A1:-0.725238911007;YY1:-0.745459907999;AIRE:-0.753990172033;NFKB1_REL_RELA:-0.770693756753;FOXL1:-0.781221531489;PBX1:-0.794077757712;TP53:-0.897235118121;HLF:-0.905023603757;FOSL2:-0.92724280099;EN1,2:-0.995923832533;UFEwm:-1.01142676528;E2F1..5:-1.03238661313;ELK1,4_GABP{A,B1}:-1.04996023832;BACH2:-1.07022780369;EVI1:-1.10690406925;FOS_FOS{B,L1}_JUN{B,D}:-1.13686625347;FOXD3:-1.21694124153;DMAP1_NCOR{1,2}_SMARC:-1.29830050971;HMGA1,2:-1.36130311772;POU1F1:-1.40636223517;ZBTB16:-1.52762182842;PAX8:-1.67313441595;HOX{A5,B5}:-1.73639139297;STAT5{A,B}:-1.82180051909;HOXA9_MEIS1:-1.90423036749;MYB:-1.91005452052;NKX2-2,8:-2.09219976929;ONECUT1,2:-2.17325263978;CDX1,2,4:-2.31454008674;PAX4:-2.33609650536
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10030-101E3;search_select_hide=table117:FF:10030-101E3
}}
}}

Latest revision as of 12:15, 3 June 2020

Name:retina, adult, pool1
Species:Human (Homo sapiens)
Library ID:CNhs10636
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueretina
dev stage24-65 years old adult
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number9100123A
catalog numberCat:636579
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005353
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10636 CAGE DRX008716 DRR009588
Accession ID Hg19

Library idBAMCTSS
CNhs10636 DRZ001013 DRZ002398
Accession ID Hg38

Library idBAMCTSS
CNhs10636 DRZ012363 DRZ013748
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10017downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.058
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0158
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.337
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.058
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.109
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.03
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.352
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.03
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.03
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0.252
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.252
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.058
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.167
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0.03
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.03
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0852
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.133
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.03
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.03
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.102
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.03
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.445
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.142
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.03
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0.058
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.03
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0.176
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.6
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.03
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.253
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.109
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.114
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.472
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.269
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.058
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.058
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0478
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.03
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0812
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.269
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.03
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.058
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.03
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.03
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.551
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0844
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.234
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.0844
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.216
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.015
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.03
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.269
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.058
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.109
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.03
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.03
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0.66
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0.778
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.155
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.155
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90.133
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.03
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.03
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0712
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0.03
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0.03
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.03
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10636

Jaspar motifP-value
MA0002.20.00322
MA0003.10.852
MA0004.10.257
MA0006.10.893
MA0007.10.39
MA0009.10.366
MA0014.10.428
MA0017.10.119
MA0018.20.264
MA0019.10.324
MA0024.10.318
MA0025.10.0467
MA0027.10.708
MA0028.10.0272
MA0029.10.317
MA0030.10.0149
MA0031.10.608
MA0035.20.57
MA0038.10.0142
MA0039.20.837
MA0040.10.452
MA0041.10.211
MA0042.10.374
MA0043.10.988
MA0046.10.66
MA0047.20.422
MA0048.10.202
MA0050.10.802
MA0051.10.828
MA0052.11.26616e-4
MA0055.10.0183
MA0057.10.949
MA0058.10.298
MA0059.10.00786
MA0060.10.266
MA0061.10.00148
MA0062.20.00174
MA0065.20.00532
MA0066.10.0333
MA0067.10.957
MA0068.10.00327
MA0069.10.82
MA0070.10.955
MA0071.10.569
MA0072.10.215
MA0073.10.509
MA0074.10.597
MA0076.10.0577
MA0077.10.94
MA0078.10.309
MA0079.20.176
MA0080.24.54184e-4
MA0081.10.156
MA0083.10.545
MA0084.10.641
MA0087.10.338
MA0088.10.0873
MA0090.10.632
MA0091.10.741
MA0092.10.53
MA0093.10.297
MA0099.23.33504e-13
MA0100.10.211
MA0101.10.00651
MA0102.20.272
MA0103.10.245
MA0104.20.0558
MA0105.15.94374e-8
MA0106.10.00297
MA0107.10.00597
MA0108.23.21087e-9
MA0111.10.377
MA0112.20.00276
MA0113.10.575
MA0114.10.0404
MA0115.10.164
MA0116.17.80428e-4
MA0117.10.426
MA0119.10.102
MA0122.10.393
MA0124.10.743
MA0125.10.00548
MA0131.10.91
MA0135.10.00575
MA0136.17.65245e-5
MA0137.20.911
MA0138.20.286
MA0139.10.422
MA0140.10.288
MA0141.10.0861
MA0142.10.378
MA0143.10.899
MA0144.10.297
MA0145.10.691
MA0146.10.126
MA0147.10.0162
MA0148.10.165
MA0149.10.0113
MA0150.14.976e-4
MA0152.10.866
MA0153.10.591
MA0154.10.0227
MA0155.10.872
MA0156.16.85219e-4
MA0157.10.581
MA0159.10.104
MA0160.10.161
MA0162.10.266
MA0163.18.99711e-11
MA0164.10.283
MA0258.10.046
MA0259.10.178



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10636

Novel motifP-value
10.0139
100.0115
1000.196
1010.978
1020.891
1030.0214
1040.628
1050.858
1060.212
1070.491
1080.652
1090.0267
110.0245
1100.0532
1116.98903e-4
1120.39
1130.254
1140.0305
1150.686
1160.376
1170.00536
1180.025
1190.248
120.924
1200.0628
1210.926
1220.577
1230.0804
1240.761
1250.084
1260.193
1270.418
1280.52
1290.195
130.0233
1300.464
1310.114
1320.442
1330.0176
1340.136
1350.971
1360.0723
1370.931
1380.213
1390.106
140.71
1400.425
1410.0429
1420.98
1430.00822
1440.694
1450.294
1460.679
1470.673
1480.0173
1490.997
150.0201
1500.177
1510.71
1520.406
1530.964
1540.501
1550.179
1560.508
1570.301
1580.582
1590.386
160.052
1600.132
1610.353
1620.849
1630.761
1640.00845
1650.167
1660.428
1670.0141
1680.94
1690.0119
170.198
180.0517
190.669
20.593
200.103
210.0886
220.655
230.863
240.396
250.273
260.0038
270.934
280.845
290.00628
30.0462
300.162
310.832
320.0273
330.0453
340.44
350.403
360.0323
370.0686
380.478
390.878
40.694
400.159
410.183
420.168
430.111
440.187
450.686
460.0409
470.0439
480.0807
490.0965
50.266
500.972
510.5
520.776
530.806
540.659
550.534
560.628
570.122
580.395
590.326
60.57
600.285
610.0474
620.169
630.283
640.186
650.57
660.125
670.449
680.257
690.359
70.169
700.00813
710.00869
720.495
730.0816
740.449
750.00484
760.135
770.902
780.0492
790.244
80.0354
800.23
810.247
820.504
830.778
840.644
850.533
860.289
870.0153
880.726
890.238
90.722
900.0299
910.472
920.384
930.676
940.0545
950.0553
960.239
970.921
980.0973
990.921



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10636


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000966 (retina)
0000970 (eye)
0000019 (camera-type eye)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0005388 (photoreceptor array)
0000020 (sense organ)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001802 (posterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010030 (human retina - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0003056 (pre-chordal neural plate)
UBERON:0010316 (germ layer / neural crest)

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