FF:10030-101E3: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005353 | ||
|HumanCAGEScanFiles=NCig10017;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/retina%252c%2520adult%252c%2520pool1.NCig10017.10030-101E3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/retina%252c%2520adult%252c%2520pool1.NCig10017.10030-101E3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/retina%252c%2520adult%252c%2520pool1.NCig10017.10030-101E3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/retina%252c%2520adult%252c%2520pool1.NCig10017.10030-101E3.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008716;DRR009588;DRZ001013;DRZ002398;DRZ012363;DRZ013748 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000966,UBERON:0000970,UBERON:0000019,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0005388,UBERON:0000020,UBERON:0001032,UBERON:0010317,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001802,UBERON:0004456,UBERON:0001456,UBERON:0010230 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010030 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/retina%252c%2520adult%252c%2520pool1.CNhs10636.10030-101E3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10030-101E3 | |id=FF:10030-101E3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010030 | ||
|is_obsolete= | |||
|library_id=CNhs10636 | |||
|library_id_phase_based=2:CNhs10636 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10030 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10030 | |||
|name=retina, adult, pool1 | |name=retina, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=NCig10017,,, | |profile_cagescan=NCig10017,,, | ||
|profile_hcage=CNhs10636,LSID657,release008,COMPLETED | |profile_hcage=CNhs10636,LSID657,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:636579 | |rna_catalog_number=Cat:636579 | ||
| Line 54: | Line 77: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.01E+05 | ||
|rna_weight_ug=25 | |rna_weight_ug=25 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 93: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.30133010591408e-277!GO:0005737;cytoplasm;1.71647743829993e-163!GO:0044444;cytoplasmic part;5.22372438043518e-105!GO:0043226;organelle;3.50907245233294e-99!GO:0043229;intracellular organelle;6.57130491238487e-99!GO:0043227;membrane-bound organelle;3.76547413520504e-95!GO:0043231;intracellular membrane-bound organelle;3.76547413520504e-95!GO:0005515;protein binding;2.67460595818888e-73!GO:0044422;organelle part;1.96464533533148e-62!GO:0044446;intracellular organelle part;2.24508555032461e-61!GO:0032991;macromolecular complex;1.90036206025078e-50!GO:0031090;organelle membrane;2.70936047314544e-41!GO:0016043;cellular component organization and biogenesis;1.25910104728152e-40!GO:0005739;mitochondrion;5.884835752904e-37!GO:0033036;macromolecule localization;6.24799531347386e-35!GO:0015031;protein transport;4.93973490344632e-34!GO:0030529;ribonucleoprotein complex;5.79714967400781e-34!GO:0003723;RNA binding;1.17859873927062e-33!GO:0008104;protein localization;1.83720829897799e-32!GO:0045184;establishment of protein localization;5.68925730998829e-32!GO:0044238;primary metabolic process;1.69925456781894e-29!GO:0044237;cellular metabolic process;3.00048118962655e-29!GO:0043233;organelle lumen;3.00048118962655e-29!GO:0031974;membrane-enclosed lumen;3.00048118962655e-29!GO:0046907;intracellular transport;5.9710536564398e-29!GO:0043234;protein complex;1.49832787928378e-28!GO:0031967;organelle envelope;4.44485772542463e-28!GO:0044429;mitochondrial part;5.09826238566158e-28!GO:0031975;envelope;6.04179064941848e-28!GO:0044428;nuclear part;2.3088446743925e-27!GO:0048770;pigment granule;2.33169472246419e-27!GO:0042470;melanosome;2.33169472246419e-27!GO:0005829;cytosol;1.35607505200998e-25!GO:0006886;intracellular protein transport;6.09681477258923e-24!GO:0019538;protein metabolic process;3.55768109517584e-23!GO:0016192;vesicle-mediated transport;2.36128149521533e-22!GO:0016071;mRNA metabolic process;3.70754495680187e-22!GO:0051649;establishment of cellular localization;5.69325424398572e-22!GO:0043170;macromolecule metabolic process;9.74175426495105e-22!GO:0051641;cellular localization;1.46141071486386e-21!GO:0005634;nucleus;6.06413663551137e-21!GO:0005740;mitochondrial envelope;6.73367445710165e-21!GO:0031966;mitochondrial membrane;1.38314159646532e-20!GO:0006119;oxidative phosphorylation;2.88731182663125e-20!GO:0008380;RNA splicing;1.60563191219949e-19!GO:0044260;cellular macromolecule metabolic process;3.06350785325857e-19!GO:0005840;ribosome;3.77630462188306e-19!GO:0019866;organelle inner membrane;4.06195704198265e-19!GO:0044267;cellular protein metabolic process;1.543750267515e-18!GO:0031982;vesicle;1.9674747574623e-18!GO:0031988;membrane-bound vesicle;2.06291206817264e-18!GO:0005743;mitochondrial inner membrane;2.38609777465985e-18!GO:0005794;Golgi apparatus;4.2971966577396e-18!GO:0009058;biosynthetic process;4.91455715994703e-18!GO:0016023;cytoplasmic membrane-bound vesicle;5.41272433513344e-18!GO:0031410;cytoplasmic vesicle;5.47229824577739e-18!GO:0006397;mRNA processing;1.12371557577457e-17!GO:0006396;RNA processing;1.16354158614187e-17!GO:0012505;endomembrane system;2.91940622161956e-17!GO:0065003;macromolecular complex assembly;3.28087386887155e-17!GO:0006412;translation;1.17799550347074e-16!GO:0005783;endoplasmic reticulum;1.69089234761474e-16!GO:0044249;cellular biosynthetic process;1.78187560906394e-16!GO:0003735;structural constituent of ribosome;4.49207307184152e-16!GO:0031981;nuclear lumen;4.76124182454517e-16!GO:0008134;transcription factor binding;1.08670544831819e-15!GO:0022607;cellular component assembly;1.08670544831819e-15!GO:0033279;ribosomal subunit;6.99403881120286e-15!GO:0006996;organelle organization and biogenesis;4.58983514090136e-14!GO:0005746;mitochondrial respiratory chain;1.9335387554429e-13!GO:0044455;mitochondrial membrane part;2.15727858675296e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;2.81161593719231e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.56420619102235e-13!GO:0009059;macromolecule biosynthetic process;4.71940210486433e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.65319364498485e-13!GO:0005681;spliceosome;5.71770399874119e-13!GO:0016462;pyrophosphatase activity;6.20277970783896e-13!GO:0017111;nucleoside-triphosphatase activity;1.14046760408872e-12!GO:0000166;nucleotide binding;1.73371244398383e-12!GO:0050136;NADH dehydrogenase (quinone) activity;2.02040262987956e-12!GO:0003954;NADH dehydrogenase activity;2.02040262987956e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.02040262987956e-12!GO:0050953;sensory perception of light stimulus;2.82681717146037e-12!GO:0007601;visual perception;2.82681717146037e-12!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.82681717146037e-12!GO:0005654;nucleoplasm;1.11661136697157e-11!GO:0048193;Golgi vesicle transport;2.24022998299649e-11!GO:0044445;cytosolic part;2.97073078359419e-11!GO:0008092;cytoskeletal protein binding;6.74416310097533e-11!GO:0044451;nucleoplasm part;8.03608427863165e-11!GO:0006605;protein targeting;1.07777763936796e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.30318351829055e-10!GO:0030964;NADH dehydrogenase complex (quinone);1.38130478404953e-10!GO:0045271;respiratory chain complex I;1.38130478404953e-10!GO:0005747;mitochondrial respiratory chain complex I;1.38130478404953e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.67132880293175e-10!GO:0042773;ATP synthesis coupled electron transport;1.67132880293175e-10!GO:0044265;cellular macromolecule catabolic process;2.03342178003069e-10!GO:0043283;biopolymer metabolic process;2.03342178003069e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;2.85673028670543e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.30064304122556e-10!GO:0005773;vacuole;3.52745292018274e-10!GO:0044432;endoplasmic reticulum part;3.71433729624764e-10!GO:0006511;ubiquitin-dependent protein catabolic process;4.49982312080591e-10!GO:0019941;modification-dependent protein catabolic process;5.62331282912577e-10!GO:0043632;modification-dependent macromolecule catabolic process;5.62331282912577e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.67103626063605e-10!GO:0006457;protein folding;6.34568523731892e-10!GO:0019829;cation-transporting ATPase activity;7.42928229230708e-10!GO:0044257;cellular protein catabolic process;9.48590443935454e-10!GO:0010467;gene expression;1.00907251175604e-09!GO:0048523;negative regulation of cellular process;2.08031498078573e-09!GO:0031980;mitochondrial lumen;2.6428654797416e-09!GO:0005759;mitochondrial matrix;2.6428654797416e-09!GO:0003924;GTPase activity;2.80757439307846e-09!GO:0022618;protein-RNA complex assembly;3.50999734733241e-09!GO:0015986;ATP synthesis coupled proton transport;5.50362529087448e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.50362529087448e-09!GO:0015935;small ribosomal subunit;5.9448488800115e-09!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.56410362077364e-09!GO:0003712;transcription cofactor activity;6.99433233076593e-09!GO:0009055;electron carrier activity;8.39440325338679e-09!GO:0006512;ubiquitin cycle;8.84764575996083e-09!GO:0016874;ligase activity;9.12047040626755e-09!GO:0008565;protein transporter activity;9.90109211645865e-09!GO:0043412;biopolymer modification;1.13639018122642e-08!GO:0000323;lytic vacuole;1.1648128061374e-08!GO:0005764;lysosome;1.1648128061374e-08!GO:0044248;cellular catabolic process;1.22034996140165e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.29831038675462e-08!GO:0006461;protein complex assembly;1.29942082352512e-08!GO:0006464;protein modification process;1.33054126636055e-08!GO:0051082;unfolded protein binding;1.60756026349622e-08!GO:0005768;endosome;1.63100861383004e-08!GO:0051186;cofactor metabolic process;1.9010052078041e-08!GO:0030036;actin cytoskeleton organization and biogenesis;2.7244369780699e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.85186707396816e-08!GO:0032553;ribonucleotide binding;3.44787464412875e-08!GO:0032555;purine ribonucleotide binding;3.44787464412875e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.53327971657272e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.53327971657272e-08!GO:0000502;proteasome complex (sensu Eukaryota);3.53327971657272e-08!GO:0043687;post-translational protein modification;3.6320637735995e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.93823086938513e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.93823086938513e-08!GO:0005635;nuclear envelope;4.38917728068218e-08!GO:0008135;translation factor activity, nucleic acid binding;4.72457073553048e-08!GO:0043228;non-membrane-bound organelle;5.40148774796517e-08!GO:0043232;intracellular non-membrane-bound organelle;5.40148774796517e-08!GO:0017076;purine nucleotide binding;5.45466619398188e-08!GO:0016044;membrane organization and biogenesis;7.25846836197296e-08!GO:0031965;nuclear membrane;7.88900879866578e-08!GO:0048519;negative regulation of biological process;9.65523873275206e-08!GO:0043285;biopolymer catabolic process;1.00588860519654e-07!GO:0006913;nucleocytoplasmic transport;1.01080722796262e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.04984558844193e-07!GO:0005789;endoplasmic reticulum membrane;1.10163635201738e-07!GO:0048475;coated membrane;1.22182549328705e-07!GO:0030117;membrane coat;1.22182549328705e-07!GO:0006366;transcription from RNA polymerase II promoter;1.29948086795843e-07!GO:0009057;macromolecule catabolic process;1.40390820852351e-07!GO:0016604;nuclear body;1.51917872576574e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.70501294428936e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.70501294428936e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.79598229603711e-07!GO:0030029;actin filament-based process;2.06093718495697e-07!GO:0006793;phosphorus metabolic process;2.1397823621597e-07!GO:0006796;phosphate metabolic process;2.1397823621597e-07!GO:0051169;nuclear transport;2.20540367666682e-07!GO:0009141;nucleoside triphosphate metabolic process;2.22027780884538e-07!GO:0030163;protein catabolic process;2.38295499013639e-07!GO:0044431;Golgi apparatus part;3.30503695413824e-07!GO:0006732;coenzyme metabolic process;3.55525747087361e-07!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.55525747087361e-07!GO:0007264;small GTPase mediated signal transduction;3.63346490195146e-07!GO:0045333;cellular respiration;3.67358779563187e-07!GO:0006754;ATP biosynthetic process;4.57596687758986e-07!GO:0006753;nucleoside phosphate metabolic process;4.57596687758986e-07!GO:0009152;purine ribonucleotide biosynthetic process;4.61433114035918e-07!GO:0016607;nuclear speck;4.64412423607069e-07!GO:0051179;localization;4.93751891871962e-07!GO:0006164;purine nucleotide biosynthetic process;5.14098701519321e-07!GO:0009150;purine ribonucleotide metabolic process;5.18822084857072e-07!GO:0006163;purine nucleotide metabolic process;5.2845546866134e-07!GO:0031252;leading edge;6.18318111117994e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;6.80929861790858e-07!GO:0000375;RNA splicing, via transesterification reactions;6.80929861790858e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;6.80929861790858e-07!GO:0006810;transport;7.04571367249447e-07!GO:0006446;regulation of translational initiation;7.30015545632572e-07!GO:0015934;large ribosomal subunit;7.48637474969072e-07!GO:0009060;aerobic respiration;9.44807946908196e-07!GO:0016564;transcription repressor activity;1.17576089860715e-06!GO:0003779;actin binding;1.17576089860715e-06!GO:0006897;endocytosis;1.24630744237396e-06!GO:0010324;membrane invagination;1.24630744237396e-06!GO:0009259;ribonucleotide metabolic process;1.32557187907662e-06!GO:0005798;Golgi-associated vesicle;1.46462631330771e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.76804422874162e-06!GO:0009966;regulation of signal transduction;2.3167986103591e-06!GO:0008639;small protein conjugating enzyme activity;2.48054124128931e-06!GO:0009260;ribonucleotide biosynthetic process;2.56530612379329e-06!GO:0046034;ATP metabolic process;2.71805107013169e-06!GO:0004842;ubiquitin-protein ligase activity;2.76806497678391e-06!GO:0012506;vesicle membrane;2.95669228542536e-06!GO:0017038;protein import;3.89714673742851e-06!GO:0005793;ER-Golgi intermediate compartment;3.99495850237747e-06!GO:0003743;translation initiation factor activity;4.17098332224221e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.31320470476385e-06!GO:0030120;vesicle coat;4.39324412472481e-06!GO:0030662;coated vesicle membrane;4.39324412472481e-06!GO:0019787;small conjugating protein ligase activity;5.12295348148268e-06!GO:0045045;secretory pathway;5.66813988485016e-06!GO:0030695;GTPase regulator activity;6.42363086995176e-06!GO:0005770;late endosome;6.68820377169803e-06!GO:0006413;translational initiation;6.92532336639744e-06!GO:0048471;perinuclear region of cytoplasm;6.99714347776575e-06!GO:0044433;cytoplasmic vesicle part;7.11770482526133e-06!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.20451525434484e-06!GO:0005905;coated pit;8.71788493865072e-06!GO:0006099;tricarboxylic acid cycle;1.09405927273556e-05!GO:0046356;acetyl-CoA catabolic process;1.09405927273556e-05!GO:0032561;guanyl ribonucleotide binding;1.19408503614551e-05!GO:0019001;guanyl nucleotide binding;1.19408503614551e-05!GO:0009056;catabolic process;1.22282965993327e-05!GO:0008047;enzyme activator activity;1.23371879073873e-05!GO:0051234;establishment of localization;1.25065850031387e-05!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.3502997161305e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.48799471628649e-05!GO:0008654;phospholipid biosynthetic process;1.52452212845271e-05!GO:0019867;outer membrane;1.59965464619065e-05!GO:0030659;cytoplasmic vesicle membrane;1.76726215567502e-05!GO:0044440;endosomal part;1.83568904033483e-05!GO:0010008;endosome membrane;1.83568904033483e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.8660780590494e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.93904625592457e-05!GO:0015399;primary active transmembrane transporter activity;1.93904625592457e-05!GO:0016310;phosphorylation;1.93925756903703e-05!GO:0005525;GTP binding;1.96399599633053e-05!GO:0005083;small GTPase regulator activity;2.0583646845011e-05!GO:0044453;nuclear membrane part;2.15381228353359e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;2.31936545831407e-05!GO:0012501;programmed cell death;2.38516642743088e-05!GO:0019899;enzyme binding;2.7613316357092e-05!GO:0009109;coenzyme catabolic process;2.76844960278807e-05!GO:0042623;ATPase activity, coupled;2.81940670886552e-05!GO:0006915;apoptosis;3.10508469656187e-05!GO:0022890;inorganic cation transmembrane transporter activity;3.51557644422652e-05!GO:0008219;cell death;3.60609462730449e-05!GO:0016265;death;3.60609462730449e-05!GO:0016887;ATPase activity;3.60609462730449e-05!GO:0005761;mitochondrial ribosome;3.73868763564749e-05!GO:0000313;organellar ribosome;3.73868763564749e-05!GO:0003714;transcription corepressor activity;4.34110273483017e-05!GO:0006084;acetyl-CoA metabolic process;4.5727796699917e-05!GO:0007010;cytoskeleton organization and biogenesis;4.5727796699917e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.63292049037341e-05!GO:0045259;proton-transporting ATP synthase complex;4.68052595602775e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.9622989115995e-05!GO:0043492;ATPase activity, coupled to movement of substances;5.24992187046493e-05!GO:0031968;organelle outer membrane;5.28433557565529e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.42800073426042e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;5.50773046729434e-05!GO:0050789;regulation of biological process;5.76474916838343e-05!GO:0050794;regulation of cellular process;5.95106005894023e-05!GO:0016881;acid-amino acid ligase activity;6.30304201641925e-05!GO:0006606;protein import into nucleus;6.33615202886949e-05!GO:0030133;transport vesicle;6.46254738532589e-05!GO:0007265;Ras protein signal transduction;7.14875798156598e-05!GO:0005791;rough endoplasmic reticulum;7.26992887848472e-05!GO:0003713;transcription coactivator activity;8.14244906409967e-05!GO:0000902;cell morphogenesis;8.57155395912771e-05!GO:0032989;cellular structure morphogenesis;8.57155395912771e-05!GO:0016049;cell growth;9.46184314222494e-05!GO:0008361;regulation of cell size;9.93544848682171e-05!GO:0051187;cofactor catabolic process;0.000109060053830886!GO:0032940;secretion by cell;0.000117728251691806!GO:0006613;cotranslational protein targeting to membrane;0.000118432592754741!GO:0051170;nuclear import;0.000128406293724125!GO:0016491;oxidoreductase activity;0.000129361079983883!GO:0000139;Golgi membrane;0.000135146262642681!GO:0051188;cofactor biosynthetic process;0.000162738225652037!GO:0032559;adenyl ribonucleotide binding;0.000181762124211712!GO:0006752;group transfer coenzyme metabolic process;0.000189848874171417!GO:0016481;negative regulation of transcription;0.000203218612378493!GO:0015980;energy derivation by oxidation of organic compounds;0.000212853421087663!GO:0043566;structure-specific DNA binding;0.000219730834940962!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000225357981387507!GO:0051246;regulation of protein metabolic process;0.000234180098218027!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000234801317641364!GO:0030118;clathrin coat;0.000253457118231039!GO:0016568;chromatin modification;0.000255389489495606!GO:0006643;membrane lipid metabolic process;0.000255389489495606!GO:0005769;early endosome;0.000282290478027779!GO:0030554;adenyl nucleotide binding;0.000287240008171667!GO:0009117;nucleotide metabolic process;0.000305575133350042!GO:0005730;nucleolus;0.000321894329319308!GO:0005096;GTPase activator activity;0.000322135883404063!GO:0016791;phosphoric monoester hydrolase activity;0.000343809457449924!GO:0005741;mitochondrial outer membrane;0.00034987370462586!GO:0016563;transcription activator activity;0.000352629580772401!GO:0042578;phosphoric ester hydrolase activity;0.000368063129357865!GO:0045786;negative regulation of progression through cell cycle;0.000377949899871385!GO:0005774;vacuolar membrane;0.000387977717997792!GO:0051427;hormone receptor binding;0.000389313734012584!GO:0045893;positive regulation of transcription, DNA-dependent;0.000389918921276588!GO:0005524;ATP binding;0.00039900504994518!GO:0007243;protein kinase cascade;0.000405456331740753!GO:0006650;glycerophospholipid metabolic process;0.000443799452797598!GO:0007600;sensory perception;0.000462959086754199!GO:0050657;nucleic acid transport;0.000498757628698891!GO:0051236;establishment of RNA localization;0.000498757628698891!GO:0050658;RNA transport;0.000498757628698891!GO:0006644;phospholipid metabolic process;0.000512822246009418!GO:0006916;anti-apoptosis;0.000524154078793128!GO:0006403;RNA localization;0.000533093825940454!GO:0006323;DNA packaging;0.000629339180063864!GO:0009108;coenzyme biosynthetic process;0.000642221747999989!GO:0009583;detection of light stimulus;0.000690700004697453!GO:0007242;intracellular signaling cascade;0.000701663898979944!GO:0065007;biological regulation;0.00070342867173323!GO:0035257;nuclear hormone receptor binding;0.000715195764119062!GO:0030867;rough endoplasmic reticulum membrane;0.000725136779664296!GO:0019748;secondary metabolic process;0.000749458065944516!GO:0050962;detection of light stimulus during sensory perception;0.000759007285754176!GO:0050908;detection of light stimulus during visual perception;0.000759007285754176!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000866967488351025!GO:0045892;negative regulation of transcription, DNA-dependent;0.000867757749014489!GO:0030135;coated vesicle;0.000868405580832315!GO:0001726;ruffle;0.000902320287428396!GO:0005643;nuclear pore;0.000908932745138421!GO:0043069;negative regulation of programmed cell death;0.000914058506926281!GO:0009892;negative regulation of metabolic process;0.000929961068860538!GO:0009584;detection of visible light;0.000969923688186633!GO:0000245;spliceosome assembly;0.00100160109060754!GO:0016070;RNA metabolic process;0.00102601257003952!GO:0042802;identical protein binding;0.00105240677804138!GO:0008286;insulin receptor signaling pathway;0.00106234936681443!GO:0000151;ubiquitin ligase complex;0.0010833912827331!GO:0031324;negative regulation of cellular metabolic process;0.0010907569663295!GO:0031902;late endosome membrane;0.00109101761428427!GO:0043066;negative regulation of apoptosis;0.00110780813580654!GO:0015629;actin cytoskeleton;0.0011221167547154!GO:0046467;membrane lipid biosynthetic process;0.00113490650843982!GO:0030027;lamellipodium;0.00118060366869116!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00118436988582198!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00120760231445378!GO:0007167;enzyme linked receptor protein signaling pathway;0.0012736630779765!GO:0006091;generation of precursor metabolites and energy;0.00133275280099528!GO:0016126;sterol biosynthetic process;0.0013745708973573!GO:0001666;response to hypoxia;0.00141373679057797!GO:0008250;oligosaccharyl transferase complex;0.00155415403506919!GO:0051128;regulation of cellular component organization and biogenesis;0.00174098370744123!GO:0001558;regulation of cell growth;0.00177517205461721!GO:0005788;endoplasmic reticulum lumen;0.00178383304287188!GO:0045941;positive regulation of transcription;0.00182275581821037!GO:0046474;glycerophospholipid biosynthetic process;0.00192564162658016!GO:0065002;intracellular protein transport across a membrane;0.0019536959356787!GO:0005839;proteasome core complex (sensu Eukaryota);0.00202513871309164!GO:0030384;phosphoinositide metabolic process;0.00209970215801417!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0021368782616203!GO:0044437;vacuolar part;0.0021691366385896!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0021691366385896!GO:0007602;phototransduction;0.00220822596886675!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00222050999346232!GO:0016197;endosome transport;0.00224445320865405!GO:0003697;single-stranded DNA binding;0.00226718089554463!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00233763680276754!GO:0004667;prostaglandin-D synthase activity;0.00233763680276754!GO:0050802;circadian sleep/wake cycle, sleep;0.00233763680276754!GO:0022410;circadian sleep/wake cycle process;0.00233763680276754!GO:0042749;regulation of circadian sleep/wake cycle;0.00233763680276754!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00253356586087855!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00253356586087855!GO:0035258;steroid hormone receptor binding;0.00282477008446145!GO:0005765;lysosomal membrane;0.00290438589451699!GO:0046530;photoreceptor cell differentiation;0.00295460748512923!GO:0004721;phosphoprotein phosphatase activity;0.00299869268958931!GO:0006818;hydrogen transport;0.00313703924991515!GO:0009165;nucleotide biosynthetic process;0.00316537652569211!GO:0043623;cellular protein complex assembly;0.00327972504959956!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00331079074490128!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00331079074490128!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00331079074490128!GO:0006612;protein targeting to membrane;0.00342799168442586!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00351566587044728!GO:0051920;peroxiredoxin activity;0.00359365077566484!GO:0003724;RNA helicase activity;0.00361542246800171!GO:0019843;rRNA binding;0.00362692257217495!GO:0008287;protein serine/threonine phosphatase complex;0.00374243916020779!GO:0048468;cell development;0.00401450521224703!GO:0008154;actin polymerization and/or depolymerization;0.00405376879456721!GO:0046488;phosphatidylinositol metabolic process;0.00407916465461655!GO:0019904;protein domain specific binding;0.00416227634960801!GO:0051028;mRNA transport;0.00423679382286221!GO:0051056;regulation of small GTPase mediated signal transduction;0.00430395212402867!GO:0030532;small nuclear ribonucleoprotein complex;0.00430631783053366!GO:0051789;response to protein stimulus;0.00444607391798792!GO:0006986;response to unfolded protein;0.00444607391798792!GO:0030660;Golgi-associated vesicle membrane;0.00446757295057364!GO:0005667;transcription factor complex;0.00457556340200003!GO:0030658;transport vesicle membrane;0.00481211441326174!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00491187979805033!GO:0007040;lysosome organization and biogenesis;0.00492960863654065!GO:0015992;proton transport;0.00506833290171362!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00512498066367364!GO:0016311;dephosphorylation;0.00544322759219174!GO:0048066;pigmentation during development;0.00551140700000765!GO:0004576;oligosaccharyl transferase activity;0.00551185577089924!GO:0006891;intra-Golgi vesicle-mediated transport;0.00574671690385205!GO:0006259;DNA metabolic process;0.00584163941820946!GO:0044255;cellular lipid metabolic process;0.00609691356037762!GO:0046489;phosphoinositide biosynthetic process;0.00658334664761453!GO:0030518;steroid hormone receptor signaling pathway;0.00663072836014175!GO:0015631;tubulin binding;0.00688212596931585!GO:0032446;protein modification by small protein conjugation;0.00713048002379442!GO:0006629;lipid metabolic process;0.00717095786308352!GO:0007033;vacuole organization and biogenesis;0.00723117216749703!GO:0015630;microtubule cytoskeleton;0.00736225742769403!GO:0005885;Arp2/3 protein complex;0.00737957861012824!GO:0008610;lipid biosynthetic process;0.00743305388970135!GO:0030521;androgen receptor signaling pathway;0.00743825218602676!GO:0004298;threonine endopeptidase activity;0.00749384932712325!GO:0016567;protein ubiquitination;0.00761751958194842!GO:0004722;protein serine/threonine phosphatase activity;0.00765157757180291!GO:0006720;isoprenoid metabolic process;0.00766217981948421!GO:0006695;cholesterol biosynthetic process;0.00795414837456373!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00800928168327882!GO:0050811;GABA receptor binding;0.00812404351899711!GO:0008026;ATP-dependent helicase activity;0.00822020829680256!GO:0006414;translational elongation;0.00847973046508117!GO:0017166;vinculin binding;0.00856253661391335!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0086757832251883!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00868741526638416!GO:0004812;aminoacyl-tRNA ligase activity;0.00868741526638416!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00868741526638416!GO:0065009;regulation of a molecular function;0.00893328384614599!GO:0005048;signal sequence binding;0.00896611796343467!GO:0007266;Rho protein signal transduction;0.00910689794741006!GO:0043021;ribonucleoprotein binding;0.00919424659226473!GO:0051168;nuclear export;0.0093375329488721!GO:0006776;vitamin A metabolic process;0.00948215309660298!GO:0042981;regulation of apoptosis;0.00948215309660298!GO:0030134;ER to Golgi transport vesicle;0.00962372347161181!GO:0003690;double-stranded DNA binding;0.00982678826780086!GO:0006766;vitamin metabolic process;0.00982678826780086!GO:0046578;regulation of Ras protein signal transduction;0.00999208781020818!GO:0043488;regulation of mRNA stability;0.0100153107850607!GO:0043487;regulation of RNA stability;0.0100153107850607!GO:0030132;clathrin coat of coated pit;0.0102839623355213!GO:0003702;RNA polymerase II transcription factor activity;0.010398629517188!GO:0006402;mRNA catabolic process;0.0105689867230507!GO:0044262;cellular carbohydrate metabolic process;0.0105788631950783!GO:0043067;regulation of programmed cell death;0.0107235824397993!GO:0033116;ER-Golgi intermediate compartment membrane;0.011007299141713!GO:0030127;COPII vesicle coat;0.0111107661539638!GO:0012507;ER to Golgi transport vesicle membrane;0.0111107661539638!GO:0045454;cell redox homeostasis;0.0113395828790032!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0118609971128007!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0120483500800717!GO:0030137;COPI-coated vesicle;0.0123675164097876!GO:0033673;negative regulation of kinase activity;0.0133727935609828!GO:0006469;negative regulation of protein kinase activity;0.0133727935609828!GO:0018196;peptidyl-asparagine modification;0.0136519105118157!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0136519105118157!GO:0001523;retinoid metabolic process;0.0138155886198214!GO:0016101;diterpenoid metabolic process;0.0138155886198214!GO:0009416;response to light stimulus;0.0139812189086435!GO:0003729;mRNA binding;0.0141151496138326!GO:0043038;amino acid activation;0.0142544740050517!GO:0006418;tRNA aminoacylation for protein translation;0.0142544740050517!GO:0043039;tRNA aminoacylation;0.0142544740050517!GO:0006470;protein amino acid dephosphorylation;0.01440658652377!GO:0005099;Ras GTPase activator activity;0.0156128655461446!GO:0046983;protein dimerization activity;0.0156674446321233!GO:0004386;helicase activity;0.0157093708093032!GO:0040008;regulation of growth;0.016565484620552!GO:0008186;RNA-dependent ATPase activity;0.0165713624859847!GO:0051287;NAD binding;0.0166344456845793!GO:0005869;dynactin complex;0.0168445658620418!GO:0051252;regulation of RNA metabolic process;0.0169609772660442!GO:0016853;isomerase activity;0.0176723029709129!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.0178281604336188!GO:0007603;phototransduction, visible light;0.018076971797528!GO:0033162;melanosome membrane;0.0181602107296481!GO:0045009;chitosome;0.0181602107296481!GO:0006509;membrane protein ectodomain proteolysis;0.0184931248307377!GO:0033619;membrane protein proteolysis;0.0184931248307377!GO:0051087;chaperone binding;0.0186427476320291!GO:0030663;COPI coated vesicle membrane;0.0191235253439078!GO:0030126;COPI vesicle coat;0.0191235253439078!GO:0016301;kinase activity;0.019960290841702!GO:0048593;camera-type eye morphogenesis;0.020655585600374!GO:0003746;translation elongation factor activity;0.020817483824473!GO:0050681;androgen receptor binding;0.0213990569350571!GO:0006607;NLS-bearing substrate import into nucleus;0.0214323819263315!GO:0048500;signal recognition particle;0.0214359105992702!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0215615411088883!GO:0009582;detection of abiotic stimulus;0.0223832574786779!GO:0048592;eye morphogenesis;0.0225084268180922!GO:0051540;metal cluster binding;0.023529115932486!GO:0051536;iron-sulfur cluster binding;0.023529115932486!GO:0030131;clathrin adaptor complex;0.0238977143977099!GO:0016788;hydrolase activity, acting on ester bonds;0.0239449805823564!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0239449805823564!GO:0030641;cellular hydrogen ion homeostasis;0.0247313998667644!GO:0016050;vesicle organization and biogenesis;0.0249757839540671!GO:0030119;AP-type membrane coat adaptor complex;0.0251514553286308!GO:0042574;retinal metabolic process;0.0255858315331633!GO:0043288;apocarotenoid metabolic process;0.0255858315331633!GO:0048154;S100 beta binding;0.0257674833814557!GO:0046930;pore complex;0.0257674833814557!GO:0006892;post-Golgi vesicle-mediated transport;0.0259037433827409!GO:0035035;histone acetyltransferase binding;0.0264305982910266!GO:0004192;cathepsin D activity;0.0268000883385499!GO:0046148;pigment biosynthetic process;0.0269149945254367!GO:0051726;regulation of cell cycle;0.0272453222992743!GO:0048487;beta-tubulin binding;0.0278824555098167!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0279449813988637!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0279449813988637!GO:0055083;monovalent inorganic anion homeostasis;0.0279449813988637!GO:0055064;chloride ion homeostasis;0.0279449813988637!GO:0030644;cellular chloride ion homeostasis;0.0279449813988637!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0280810779080842!GO:0015002;heme-copper terminal oxidase activity;0.0280810779080842!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0280810779080842!GO:0004129;cytochrome-c oxidase activity;0.0280810779080842!GO:0031901;early endosome membrane;0.0287018793875704!GO:0006635;fatty acid beta-oxidation;0.0290869909068614!GO:0030522;intracellular receptor-mediated signaling pathway;0.0295181599756456!GO:0005085;guanyl-nucleotide exchange factor activity;0.0295695754614397!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0300740196404805!GO:0043405;regulation of MAP kinase activity;0.0301709292215724!GO:0003676;nucleic acid binding;0.0307931147815654!GO:0030426;growth cone;0.0308079396692891!GO:0042461;photoreceptor cell development;0.0311260146178051!GO:0008139;nuclear localization sequence binding;0.031389218594869!GO:0051539;4 iron, 4 sulfur cluster binding;0.031389218594869!GO:0048489;synaptic vesicle transport;0.0317404960326652!GO:0004364;glutathione transferase activity;0.0317855787923128!GO:0006661;phosphatidylinositol biosynthetic process;0.0318641017571102!GO:0051270;regulation of cell motility;0.0319916887119856!GO:0006333;chromatin assembly or disassembly;0.032067602058163!GO:0007005;mitochondrion organization and biogenesis;0.0320854298970386!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0323355227733655!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0330441374948091!GO:0005813;centrosome;0.033089373072539!GO:0030100;regulation of endocytosis;0.0332207314557322!GO:0000059;protein import into nucleus, docking;0.0334445089616959!GO:0051348;negative regulation of transferase activity;0.0334625489764372!GO:0006672;ceramide metabolic process;0.0337683046334109!GO:0030041;actin filament polymerization;0.0337683046334109!GO:0048522;positive regulation of cellular process;0.0344622223169016!GO:0006582;melanin metabolic process;0.0344622223169016!GO:0006583;melanin biosynthetic process from tyrosine;0.0344622223169016!GO:0042438;melanin biosynthetic process;0.0344622223169016!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0345502981273769!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0349672223981429!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0349672223981429!GO:0030427;site of polarized growth;0.0354785078918509!GO:0000074;regulation of progression through cell cycle;0.0358287796346837!GO:0005100;Rho GTPase activator activity;0.0362902021535912!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0366659342087841!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0367396549620333!GO:0000096;sulfur amino acid metabolic process;0.036910303803292!GO:0016787;hydrolase activity;0.0371868563396018!GO:0004004;ATP-dependent RNA helicase activity;0.0379948196371632!GO:0004300;enoyl-CoA hydratase activity;0.0380528972432867!GO:0005874;microtubule;0.0384736122353444!GO:0006979;response to oxidative stress;0.0384736122353444!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0387430961556912!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0388587341343926!GO:0045047;protein targeting to ER;0.0388587341343926!GO:0030004;cellular monovalent inorganic cation homeostasis;0.0389193386932667!GO:0055067;monovalent inorganic cation homeostasis;0.0389193386932667!GO:0042440;pigment metabolic process;0.0399019006132362!GO:0031072;heat shock protein binding;0.0402655130990983!GO:0040011;locomotion;0.0403697499139535!GO:0006007;glucose catabolic process;0.0404690040785514!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0406727125164555!GO:0030125;clathrin vesicle coat;0.0409940233339419!GO:0030665;clathrin coated vesicle membrane;0.0409940233339419!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0417136634743356!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0418074044260697!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0418576878651021!GO:0004784;superoxide dismutase activity;0.0418576878651021!GO:0016859;cis-trans isomerase activity;0.0418982481774343!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0424761948900188!GO:0007030;Golgi organization and biogenesis;0.0436877987312598!GO:0008354;germ cell migration;0.0441919246851954!GO:0043087;regulation of GTPase activity;0.0446556583125285!GO:0051276;chromosome organization and biogenesis;0.0454110071679113!GO:0051049;regulation of transport;0.045534215695702!GO:0006721;terpenoid metabolic process;0.0462897420427014!GO:0030176;integral to endoplasmic reticulum membrane;0.0467400336074553!GO:0005912;adherens junction;0.0468354470994235!GO:0008601;protein phosphatase type 2A regulator activity;0.0468777251768553!GO:0005938;cell cortex;0.0473024199641286!GO:0003785;actin monomer binding;0.047330681667528!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0475242148793539!GO:0006376;mRNA splice site selection;0.0477057721208852!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0477057721208852!GO:0032906;transforming growth factor-beta2 production;0.0477831037152628!GO:0032909;regulation of transforming growth factor-beta2 production;0.0477831037152628!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0493358447602316!GO:0050790;regulation of catalytic activity;0.0493414002671036!GO:0005784;translocon complex;0.0494450641663821!GO:0042158;lipoprotein biosynthetic process;0.049926510989382!GO:0000159;protein phosphatase type 2A complex;0.049926510989382 | |||
|sample_id=10030 | |sample_id=10030 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 101: | ||
|sample_tissue=retina | |sample_tissue=retina | ||
|top_motifs=CRX:9.07627337135;HOX{A6,A7,B6,B7}:6.26537821853;NANOG:4.71346570951;VSX1,2:4.52236161163;RORA:3.71008619373;RBPJ:2.71040935513;MAZ:2.62969571553;NFIL3:2.62184421026;PATZ1:2.52055298019;SP1:2.4191480629;HIC1:2.41661931717;ESRRA:2.41459521875;PAX6:2.38736924408;ADNP_IRX_SIX_ZHX:2.2817551272;MTF1:2.26879842113;TFAP2{A,C}:2.24024906204;GTF2A1,2:2.2205272432;MED-1{core}:2.20921158657;GTF2I:2.20078519594;TFAP2B:2.18948724369;PRDM1:2.11627929905;NKX3-2:2.08395395147;MYFfamily:2.04109027498;RREB1:1.9943251761;TLX1..3_NFIC{dimer}:1.99016003301;PAX5:1.96031225207;MTE{core}:1.91683491024;RXR{A,B,G}:1.85223596027;PRRX1,2:1.78592854059;MZF1:1.78248352401;SOX5:1.77465613723;SMAD1..7,9:1.76919664961;EGR1..3:1.76885670878;PAX1,9:1.76614522288;ZFP161:1.69904918442;REST:1.67894115171;EBF1:1.63606951281;SREBF1,2:1.5433300481;EP300:1.53992995883;XCPE1{core}:1.51392670069;BREu{core}:1.50436973388;SPZ1:1.49296811385;MEF2{A,B,C,D}:1.48649549694;TFCP2:1.46514121792;GCM1,2:1.45850534122;TGIF1:1.41089135318;ZNF423:1.37475969791;HAND1,2:1.35977396178;TFAP4:1.33268473523;GFI1:1.32075788644;ATF2:1.31081348154;SOX2:1.28672385173;GFI1B:1.25940956227;ZIC1..3:1.23248750532;NR5A1,2:1.15955861949;FOXM1:1.13392024978;TBP:1.0285374586;AHR_ARNT_ARNT2:1.02713340968;NHLH1,2:1.02263607565;ZNF238:0.962739627972;TLX2:0.962056684548;FOX{I1,J2}:0.961713704595;MYBL2:0.959117125459;SRF:0.956599143384;FOX{D1,D2}:0.937244192395;IKZF1:0.935036641764;HBP1_HMGB_SSRP1_UBTF:0.902743378376;TAL1_TCF{3,4,12}:0.898442607246;CDC5L:0.889168629566;KLF4:0.816211850387;ZBTB6:0.812522986228;RFX1:0.802791004684;JUN:0.794621069051;PITX1..3:0.767328816844;ALX4:0.708214701198;AR:0.701582423204;bHLH_family:0.701535983314;GATA4:0.698773164359;SOX{8,9,10}:0.695032173122;RFX2..5_RFXANK_RFXAP:0.645752445073;MYOD1:0.610188948155;NFATC1..3:0.607493529397;GLI1..3:0.606682288171;POU5F1:0.597258397409;FOXO1,3,4:0.561245988407;BPTF:0.548297926275;T:0.543617201349;STAT1,3:0.519573249031;HMX1:0.499708001993;LMO2:0.485808206599;HSF1,2:0.477563935277;TEAD1:0.457197696475;NKX2-1,4:0.443058143223;POU6F1:0.436761111547;NFE2L1:0.375884441022;TOPORS:0.352548163944;CUX2:0.343509525453;NR3C1:0.339374522097;FOXP1:0.331044060729;POU2F1..3:0.327976338382;CREB1:0.304311225914;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.303466688676;IRF7:0.295170632283;SNAI1..3:0.288993393205;ESR1:0.281197043869;IRF1,2:0.260412703778;POU3F1..4:0.246852690362;NRF1:0.220730792756;STAT2,4,6:0.205467569854;FOXA2:0.201599225296;NFY{A,B,C}:0.176870270888;RXRA_VDR{dimer}:0.175224676224;MAFB:0.171151498477;ZNF143:0.157529992766;SOX17:0.155815163703;NKX6-1,2:0.150209351013;FOXN1:0.133120925874;PAX2:0.0800658263116;ZEB1:0.0660723230275;FOX{F1,F2,J1}:0.0511231584478;GZF1:0.0312868162715;NKX2-3_NKX2-5:0.00870153994246;ZNF148:-0.0129705341135;SPIB:-0.0262270432349;HNF4A_NR2F1,2:-0.0265121179229;GATA6:-0.0475172008987;HNF1A:-0.0704561923928;PPARG:-0.0723299839723;ETS1,2:-0.0963931346652;TBX4,5:-0.118484751606;TFDP1:-0.130734329519;XBP1:-0.138996689559;NFIX:-0.14402879917;OCT4_SOX2{dimer}:-0.202637868383;ATF6:-0.204604640792;NR1H4:-0.212848323744;FOXP3:-0.224269887993;SPI1:-0.246078920368;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.267416577821;ATF4:-0.277593301252;LHX3,4:-0.281993165807;NANOG{mouse}:-0.288024054312;ATF5_CREB3:-0.327528093753;PDX1:-0.328964835411;IKZF2:-0.34317141255;PAX3,7:-0.349198975065;DBP:-0.39430004186;TEF:-0.443239927789;HIF1A:-0.457424282765;FOXQ1:-0.463083694451;ALX1:-0.467225890762;NKX3-1:-0.477133562091;HES1:-0.48761952996;ZNF384:-0.523833570641;NFE2:-0.530504554714;HOX{A4,D4}:-0.57852222226;ARID5B:-0.640586969424;CEBPA,B_DDIT3:-0.642281873827;NFE2L2:-0.654446982757;ELF1,2,4:-0.658028029674;LEF1_TCF7_TCF7L1,2:-0.707684006687;RUNX1..3:-0.719504052459;NR6A1:-0.725238911007;YY1:-0.745459907999;AIRE:-0.753990172033;NFKB1_REL_RELA:-0.770693756753;FOXL1:-0.781221531489;PBX1:-0.794077757712;TP53:-0.897235118121;HLF:-0.905023603757;FOSL2:-0.92724280099;EN1,2:-0.995923832533;UFEwm:-1.01142676528;E2F1..5:-1.03238661313;ELK1,4_GABP{A,B1}:-1.04996023832;BACH2:-1.07022780369;EVI1:-1.10690406925;FOS_FOS{B,L1}_JUN{B,D}:-1.13686625347;FOXD3:-1.21694124153;DMAP1_NCOR{1,2}_SMARC:-1.29830050971;HMGA1,2:-1.36130311772;POU1F1:-1.40636223517;ZBTB16:-1.52762182842;PAX8:-1.67313441595;HOX{A5,B5}:-1.73639139297;STAT5{A,B}:-1.82180051909;HOXA9_MEIS1:-1.90423036749;MYB:-1.91005452052;NKX2-2,8:-2.09219976929;ONECUT1,2:-2.17325263978;CDX1,2,4:-2.31454008674;PAX4:-2.33609650536 | |top_motifs=CRX:9.07627337135;HOX{A6,A7,B6,B7}:6.26537821853;NANOG:4.71346570951;VSX1,2:4.52236161163;RORA:3.71008619373;RBPJ:2.71040935513;MAZ:2.62969571553;NFIL3:2.62184421026;PATZ1:2.52055298019;SP1:2.4191480629;HIC1:2.41661931717;ESRRA:2.41459521875;PAX6:2.38736924408;ADNP_IRX_SIX_ZHX:2.2817551272;MTF1:2.26879842113;TFAP2{A,C}:2.24024906204;GTF2A1,2:2.2205272432;MED-1{core}:2.20921158657;GTF2I:2.20078519594;TFAP2B:2.18948724369;PRDM1:2.11627929905;NKX3-2:2.08395395147;MYFfamily:2.04109027498;RREB1:1.9943251761;TLX1..3_NFIC{dimer}:1.99016003301;PAX5:1.96031225207;MTE{core}:1.91683491024;RXR{A,B,G}:1.85223596027;PRRX1,2:1.78592854059;MZF1:1.78248352401;SOX5:1.77465613723;SMAD1..7,9:1.76919664961;EGR1..3:1.76885670878;PAX1,9:1.76614522288;ZFP161:1.69904918442;REST:1.67894115171;EBF1:1.63606951281;SREBF1,2:1.5433300481;EP300:1.53992995883;XCPE1{core}:1.51392670069;BREu{core}:1.50436973388;SPZ1:1.49296811385;MEF2{A,B,C,D}:1.48649549694;TFCP2:1.46514121792;GCM1,2:1.45850534122;TGIF1:1.41089135318;ZNF423:1.37475969791;HAND1,2:1.35977396178;TFAP4:1.33268473523;GFI1:1.32075788644;ATF2:1.31081348154;SOX2:1.28672385173;GFI1B:1.25940956227;ZIC1..3:1.23248750532;NR5A1,2:1.15955861949;FOXM1:1.13392024978;TBP:1.0285374586;AHR_ARNT_ARNT2:1.02713340968;NHLH1,2:1.02263607565;ZNF238:0.962739627972;TLX2:0.962056684548;FOX{I1,J2}:0.961713704595;MYBL2:0.959117125459;SRF:0.956599143384;FOX{D1,D2}:0.937244192395;IKZF1:0.935036641764;HBP1_HMGB_SSRP1_UBTF:0.902743378376;TAL1_TCF{3,4,12}:0.898442607246;CDC5L:0.889168629566;KLF4:0.816211850387;ZBTB6:0.812522986228;RFX1:0.802791004684;JUN:0.794621069051;PITX1..3:0.767328816844;ALX4:0.708214701198;AR:0.701582423204;bHLH_family:0.701535983314;GATA4:0.698773164359;SOX{8,9,10}:0.695032173122;RFX2..5_RFXANK_RFXAP:0.645752445073;MYOD1:0.610188948155;NFATC1..3:0.607493529397;GLI1..3:0.606682288171;POU5F1:0.597258397409;FOXO1,3,4:0.561245988407;BPTF:0.548297926275;T:0.543617201349;STAT1,3:0.519573249031;HMX1:0.499708001993;LMO2:0.485808206599;HSF1,2:0.477563935277;TEAD1:0.457197696475;NKX2-1,4:0.443058143223;POU6F1:0.436761111547;NFE2L1:0.375884441022;TOPORS:0.352548163944;CUX2:0.343509525453;NR3C1:0.339374522097;FOXP1:0.331044060729;POU2F1..3:0.327976338382;CREB1:0.304311225914;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.303466688676;IRF7:0.295170632283;SNAI1..3:0.288993393205;ESR1:0.281197043869;IRF1,2:0.260412703778;POU3F1..4:0.246852690362;NRF1:0.220730792756;STAT2,4,6:0.205467569854;FOXA2:0.201599225296;NFY{A,B,C}:0.176870270888;RXRA_VDR{dimer}:0.175224676224;MAFB:0.171151498477;ZNF143:0.157529992766;SOX17:0.155815163703;NKX6-1,2:0.150209351013;FOXN1:0.133120925874;PAX2:0.0800658263116;ZEB1:0.0660723230275;FOX{F1,F2,J1}:0.0511231584478;GZF1:0.0312868162715;NKX2-3_NKX2-5:0.00870153994246;ZNF148:-0.0129705341135;SPIB:-0.0262270432349;HNF4A_NR2F1,2:-0.0265121179229;GATA6:-0.0475172008987;HNF1A:-0.0704561923928;PPARG:-0.0723299839723;ETS1,2:-0.0963931346652;TBX4,5:-0.118484751606;TFDP1:-0.130734329519;XBP1:-0.138996689559;NFIX:-0.14402879917;OCT4_SOX2{dimer}:-0.202637868383;ATF6:-0.204604640792;NR1H4:-0.212848323744;FOXP3:-0.224269887993;SPI1:-0.246078920368;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.267416577821;ATF4:-0.277593301252;LHX3,4:-0.281993165807;NANOG{mouse}:-0.288024054312;ATF5_CREB3:-0.327528093753;PDX1:-0.328964835411;IKZF2:-0.34317141255;PAX3,7:-0.349198975065;DBP:-0.39430004186;TEF:-0.443239927789;HIF1A:-0.457424282765;FOXQ1:-0.463083694451;ALX1:-0.467225890762;NKX3-1:-0.477133562091;HES1:-0.48761952996;ZNF384:-0.523833570641;NFE2:-0.530504554714;HOX{A4,D4}:-0.57852222226;ARID5B:-0.640586969424;CEBPA,B_DDIT3:-0.642281873827;NFE2L2:-0.654446982757;ELF1,2,4:-0.658028029674;LEF1_TCF7_TCF7L1,2:-0.707684006687;RUNX1..3:-0.719504052459;NR6A1:-0.725238911007;YY1:-0.745459907999;AIRE:-0.753990172033;NFKB1_REL_RELA:-0.770693756753;FOXL1:-0.781221531489;PBX1:-0.794077757712;TP53:-0.897235118121;HLF:-0.905023603757;FOSL2:-0.92724280099;EN1,2:-0.995923832533;UFEwm:-1.01142676528;E2F1..5:-1.03238661313;ELK1,4_GABP{A,B1}:-1.04996023832;BACH2:-1.07022780369;EVI1:-1.10690406925;FOS_FOS{B,L1}_JUN{B,D}:-1.13686625347;FOXD3:-1.21694124153;DMAP1_NCOR{1,2}_SMARC:-1.29830050971;HMGA1,2:-1.36130311772;POU1F1:-1.40636223517;ZBTB16:-1.52762182842;PAX8:-1.67313441595;HOX{A5,B5}:-1.73639139297;STAT5{A,B}:-1.82180051909;HOXA9_MEIS1:-1.90423036749;MYB:-1.91005452052;NKX2-2,8:-2.09219976929;ONECUT1,2:-2.17325263978;CDX1,2,4:-2.31454008674;PAX4:-2.33609650536 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10030-101E3;search_select_hide=table117:FF:10030-101E3 | |||
}} | }} | ||
Latest revision as of 12:15, 3 June 2020
| Name: | retina, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10636 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10636
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10636
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0139 |
| 10 | 10 | 0.0115 |
| 100 | 100 | 0.196 |
| 101 | 101 | 0.978 |
| 102 | 102 | 0.891 |
| 103 | 103 | 0.0214 |
| 104 | 104 | 0.628 |
| 105 | 105 | 0.858 |
| 106 | 106 | 0.212 |
| 107 | 107 | 0.491 |
| 108 | 108 | 0.652 |
| 109 | 109 | 0.0267 |
| 11 | 11 | 0.0245 |
| 110 | 110 | 0.0532 |
| 111 | 111 | 6.98903e-4 |
| 112 | 112 | 0.39 |
| 113 | 113 | 0.254 |
| 114 | 114 | 0.0305 |
| 115 | 115 | 0.686 |
| 116 | 116 | 0.376 |
| 117 | 117 | 0.00536 |
| 118 | 118 | 0.025 |
| 119 | 119 | 0.248 |
| 12 | 12 | 0.924 |
| 120 | 120 | 0.0628 |
| 121 | 121 | 0.926 |
| 122 | 122 | 0.577 |
| 123 | 123 | 0.0804 |
| 124 | 124 | 0.761 |
| 125 | 125 | 0.084 |
| 126 | 126 | 0.193 |
| 127 | 127 | 0.418 |
| 128 | 128 | 0.52 |
| 129 | 129 | 0.195 |
| 13 | 13 | 0.0233 |
| 130 | 130 | 0.464 |
| 131 | 131 | 0.114 |
| 132 | 132 | 0.442 |
| 133 | 133 | 0.0176 |
| 134 | 134 | 0.136 |
| 135 | 135 | 0.971 |
| 136 | 136 | 0.0723 |
| 137 | 137 | 0.931 |
| 138 | 138 | 0.213 |
| 139 | 139 | 0.106 |
| 14 | 14 | 0.71 |
| 140 | 140 | 0.425 |
| 141 | 141 | 0.0429 |
| 142 | 142 | 0.98 |
| 143 | 143 | 0.00822 |
| 144 | 144 | 0.694 |
| 145 | 145 | 0.294 |
| 146 | 146 | 0.679 |
| 147 | 147 | 0.673 |
| 148 | 148 | 0.0173 |
| 149 | 149 | 0.997 |
| 15 | 15 | 0.0201 |
| 150 | 150 | 0.177 |
| 151 | 151 | 0.71 |
| 152 | 152 | 0.406 |
| 153 | 153 | 0.964 |
| 154 | 154 | 0.501 |
| 155 | 155 | 0.179 |
| 156 | 156 | 0.508 |
| 157 | 157 | 0.301 |
| 158 | 158 | 0.582 |
| 159 | 159 | 0.386 |
| 16 | 16 | 0.052 |
| 160 | 160 | 0.132 |
| 161 | 161 | 0.353 |
| 162 | 162 | 0.849 |
| 163 | 163 | 0.761 |
| 164 | 164 | 0.00845 |
| 165 | 165 | 0.167 |
| 166 | 166 | 0.428 |
| 167 | 167 | 0.0141 |
| 168 | 168 | 0.94 |
| 169 | 169 | 0.0119 |
| 17 | 17 | 0.198 |
| 18 | 18 | 0.0517 |
| 19 | 19 | 0.669 |
| 2 | 2 | 0.593 |
| 20 | 20 | 0.103 |
| 21 | 21 | 0.0886 |
| 22 | 22 | 0.655 |
| 23 | 23 | 0.863 |
| 24 | 24 | 0.396 |
| 25 | 25 | 0.273 |
| 26 | 26 | 0.0038 |
| 27 | 27 | 0.934 |
| 28 | 28 | 0.845 |
| 29 | 29 | 0.00628 |
| 3 | 3 | 0.0462 |
| 30 | 30 | 0.162 |
| 31 | 31 | 0.832 |
| 32 | 32 | 0.0273 |
| 33 | 33 | 0.0453 |
| 34 | 34 | 0.44 |
| 35 | 35 | 0.403 |
| 36 | 36 | 0.0323 |
| 37 | 37 | 0.0686 |
| 38 | 38 | 0.478 |
| 39 | 39 | 0.878 |
| 4 | 4 | 0.694 |
| 40 | 40 | 0.159 |
| 41 | 41 | 0.183 |
| 42 | 42 | 0.168 |
| 43 | 43 | 0.111 |
| 44 | 44 | 0.187 |
| 45 | 45 | 0.686 |
| 46 | 46 | 0.0409 |
| 47 | 47 | 0.0439 |
| 48 | 48 | 0.0807 |
| 49 | 49 | 0.0965 |
| 5 | 5 | 0.266 |
| 50 | 50 | 0.972 |
| 51 | 51 | 0.5 |
| 52 | 52 | 0.776 |
| 53 | 53 | 0.806 |
| 54 | 54 | 0.659 |
| 55 | 55 | 0.534 |
| 56 | 56 | 0.628 |
| 57 | 57 | 0.122 |
| 58 | 58 | 0.395 |
| 59 | 59 | 0.326 |
| 6 | 6 | 0.57 |
| 60 | 60 | 0.285 |
| 61 | 61 | 0.0474 |
| 62 | 62 | 0.169 |
| 63 | 63 | 0.283 |
| 64 | 64 | 0.186 |
| 65 | 65 | 0.57 |
| 66 | 66 | 0.125 |
| 67 | 67 | 0.449 |
| 68 | 68 | 0.257 |
| 69 | 69 | 0.359 |
| 7 | 7 | 0.169 |
| 70 | 70 | 0.00813 |
| 71 | 71 | 0.00869 |
| 72 | 72 | 0.495 |
| 73 | 73 | 0.0816 |
| 74 | 74 | 0.449 |
| 75 | 75 | 0.00484 |
| 76 | 76 | 0.135 |
| 77 | 77 | 0.902 |
| 78 | 78 | 0.0492 |
| 79 | 79 | 0.244 |
| 8 | 8 | 0.0354 |
| 80 | 80 | 0.23 |
| 81 | 81 | 0.247 |
| 82 | 82 | 0.504 |
| 83 | 83 | 0.778 |
| 84 | 84 | 0.644 |
| 85 | 85 | 0.533 |
| 86 | 86 | 0.289 |
| 87 | 87 | 0.0153 |
| 88 | 88 | 0.726 |
| 89 | 89 | 0.238 |
| 9 | 9 | 0.722 |
| 90 | 90 | 0.0299 |
| 91 | 91 | 0.472 |
| 92 | 92 | 0.384 |
| 93 | 93 | 0.676 |
| 94 | 94 | 0.0545 |
| 95 | 95 | 0.0553 |
| 96 | 96 | 0.239 |
| 97 | 97 | 0.921 |
| 98 | 98 | 0.0973 |
| 99 | 99 | 0.921 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10636
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010030 human retina - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000966 (retina)
0000970 (eye)
0000019 (camera-type eye)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0005388 (photoreceptor array)
0000020 (sense organ)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001802 (posterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010030 (human retina - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0003056 (pre-chordal neural plate)
UBERON:0010316 (germ layer / neural crest)
