FF:10058-101H4: Difference between revisions

Latest revision as of 12:18, 3 June 2020

Name:	trachea, fetal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11766
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	trachea
dev stage	29 weeks fetus
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	B402231
catalog number	Cat:RtHFN: Trachea
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005467

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11766		CAGE		DRX008754		DRR009626

Accession ID Hg19

Library id		BAM		CTSS
CNhs11766		DRZ001051		DRZ002436

Accession ID Hg38

Library id		BAM		CTSS
CNhs11766		DRZ012401		DRZ013786

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.084
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.129
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.522
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0.221
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.396
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.125
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.984
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.139
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.216
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.319
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0.221
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0137
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.125
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0432
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.125
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.301
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.668
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0683
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.00245
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.425
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.11
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.221
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0.425
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.367
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.221
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.299
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.125
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.301
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.601
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.902
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.125
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.125
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.221
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0.301
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.125
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0373
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.902
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.125
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0.367
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.221
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11766

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.24365e-5
MA0003.1	MA0003.1	0.84
MA0004.1	MA0004.1	0.012
MA0006.1	MA0006.1	0.438
MA0007.1	MA0007.1	0.307
MA0009.1	MA0009.1	0.381
MA0014.1	MA0014.1	0.232
MA0017.1	MA0017.1	0.136
MA0018.2	MA0018.2	0.354
MA0019.1	MA0019.1	0.847
MA0024.1	MA0024.1	0.246
MA0025.1	MA0025.1	0.506
MA0027.1	MA0027.1	0.846
MA0028.1	MA0028.1	4.63707e-6
MA0029.1	MA0029.1	0.294
MA0030.1	MA0030.1	0.353
MA0031.1	MA0031.1	0.982
MA0035.2	MA0035.2	0.134
MA0038.1	MA0038.1	0.385
MA0039.2	MA0039.2	0.348
MA0040.1	MA0040.1	0.507
MA0041.1	MA0041.1	0.646
MA0042.1	MA0042.1	0.931
MA0043.1	MA0043.1	0.00987
MA0046.1	MA0046.1	0.0676
MA0047.2	MA0047.2	0.31
MA0048.1	MA0048.1	0.269
MA0050.1	MA0050.1	0.044
MA0051.1	MA0051.1	0.0738
MA0052.1	MA0052.1	3.16532e-8
MA0055.1	MA0055.1	0.00265
MA0057.1	MA0057.1	0.787
MA0058.1	MA0058.1	0.00546
MA0059.1	MA0059.1	0.00614
MA0060.1	MA0060.1	0.00407
MA0061.1	MA0061.1	1.62161e-5
MA0062.2	MA0062.2	1.93481e-11
MA0065.2	MA0065.2	0.00636
MA0066.1	MA0066.1	0.0158
MA0067.1	MA0067.1	0.0203
MA0068.1	MA0068.1	0.00308
MA0069.1	MA0069.1	0.775
MA0070.1	MA0070.1	0.704
MA0071.1	MA0071.1	0.24
MA0072.1	MA0072.1	0.0662
MA0073.1	MA0073.1	0.4
MA0074.1	MA0074.1	0.71
MA0076.1	MA0076.1	4.93133e-7
MA0077.1	MA0077.1	0.836
MA0078.1	MA0078.1	0.426
MA0079.2	MA0079.2	0.92
MA0080.2	MA0080.2	5.7276e-7
MA0081.1	MA0081.1	0.00699
MA0083.1	MA0083.1	0.417
MA0084.1	MA0084.1	0.0676
MA0087.1	MA0087.1	0.158
MA0088.1	MA0088.1	0.00843
MA0090.1	MA0090.1	0.138
MA0091.1	MA0091.1	0.576
MA0092.1	MA0092.1	0.458
MA0093.1	MA0093.1	0.013
MA0099.2	MA0099.2	2.14805e-21
MA0100.1	MA0100.1	0.0935
MA0101.1	MA0101.1	2.23669e-5
MA0102.2	MA0102.2	0.174
MA0103.1	MA0103.1	0.647
MA0104.2	MA0104.2	7.66828e-4
MA0105.1	MA0105.1	1.47502e-8
MA0106.1	MA0106.1	0.051
MA0107.1	MA0107.1	2.87975e-5
MA0108.2	MA0108.2	3.28186e-18
MA0111.1	MA0111.1	0.666
MA0112.2	MA0112.2	0.225
MA0113.1	MA0113.1	0.404
MA0114.1	MA0114.1	0.0157
MA0115.1	MA0115.1	0.666
MA0116.1	MA0116.1	3.17815e-4
MA0117.1	MA0117.1	0.21
MA0119.1	MA0119.1	0.812
MA0122.1	MA0122.1	0.57
MA0124.1	MA0124.1	0.659
MA0125.1	MA0125.1	0.606
MA0131.1	MA0131.1	0.753
MA0135.1	MA0135.1	0.216
MA0136.1	MA0136.1	9.76623e-11
MA0137.2	MA0137.2	0.767
MA0138.2	MA0138.2	0.475
MA0139.1	MA0139.1	0.00889
MA0140.1	MA0140.1	0.0834
MA0141.1	MA0141.1	0.0812
MA0142.1	MA0142.1	0.0274
MA0143.1	MA0143.1	0.573
MA0144.1	MA0144.1	0.997
MA0145.1	MA0145.1	0.415
MA0146.1	MA0146.1	0.125
MA0147.1	MA0147.1	4.27345e-4
MA0148.1	MA0148.1	0.217
MA0149.1	MA0149.1	0.0136
MA0150.1	MA0150.1	1.64368e-10
MA0152.1	MA0152.1	0.0136
MA0153.1	MA0153.1	0.549
MA0154.1	MA0154.1	0.0133
MA0155.1	MA0155.1	0.488
MA0156.1	MA0156.1	1.22291e-10
MA0157.1	MA0157.1	0.594
MA0159.1	MA0159.1	0.182
MA0160.1	MA0160.1	0.0241
MA0162.1	MA0162.1	0.904
MA0163.1	MA0163.1	2.98634e-6
MA0164.1	MA0164.1	0.485
MA0258.1	MA0258.1	0.326
MA0259.1	MA0259.1	0.0786

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11766

Novel motif	Logo	P-value
1	1	0.0463
10	10	0.0424
100	100	0.683
101	101	0.728
102	102	0.41
103	103	0.102
104	104	0.623
105	105	0.819
106	106	0.977
107	107	0.133
108	108	0.47
109	109	0.00491
11	11	0.0924
110	110	0.127
111	111	0.0751
112	112	0.987
113	113	5.06755e-4
114	114	0.011
115	115	0.162
116	116	0.652
117	117	0.00824
118	118	0.0332
119	119	0.378
12	12	0.421
120	120	0.435
121	121	0.729
122	122	0.0994
123	123	0.522
124	124	0.161
125	125	0.38
126	126	0.532
127	127	0.198
128	128	0.612
129	129	0.289
13	13	0.185
130	130	0.948
131	131	0.601
132	132	0.0305
133	133	0.0985
134	134	0.606
135	135	0.655
136	136	0.178
137	137	0.344
138	138	0.363
139	139	0.295
14	14	0.722
140	140	0.753
141	141	0.521
142	142	0.701
143	143	0.00304
144	144	0.965
145	145	0.944
146	146	0.715
147	147	0.0937
148	148	0.302
149	149	0.773
15	15	0.0233
150	150	0.409
151	151	0.97
152	152	0.744
153	153	0.464
154	154	0.652
155	155	0.252
156	156	0.993
157	157	0.658
158	158	0.112
159	159	0.939
16	16	0.934
160	160	0.725
161	161	0.201
162	162	0.387
163	163	0.195
164	164	0.137
165	165	0.304
166	166	0.0823
167	167	0.0184
168	168	0.818
169	169	0.149
17	17	0.431
18	18	0.0254
19	19	0.504
2	2	0.133
20	20	0.11
21	21	0.588
22	22	0.482
23	23	0.812
24	24	0.175
25	25	0.464
26	26	0.0515
27	27	0.655
28	28	0.569
29	29	0.0204
3	3	0.188
30	30	0.08
31	31	0.94
32	32	1.75312e-4
33	33	0.194
34	34	0.644
35	35	0.147
36	36	0.03
37	37	0.0915
38	38	0.576
39	39	0.455
4	4	0.385
40	40	0.048
41	41	0.0635
42	42	0.202
43	43	0.0972
44	44	0.763
45	45	0.649
46	46	0.15
47	47	0.0636
48	48	0.201
49	49	0.0722
5	5	0.372
50	50	0.586
51	51	0.44
52	52	0.23
53	53	0.964
54	54	0.74
55	55	0.226
56	56	0.729
57	57	0.447
58	58	0.304
59	59	0.632
6	6	0.987
60	60	0.766
61	61	0.125
62	62	0.228
63	63	0.954
64	64	0.248
65	65	0.871
66	66	0.0116
67	67	0.368
68	68	0.526
69	69	0.538
7	7	0.452
70	70	0.122
71	71	0.0524
72	72	0.249
73	73	0.176
74	74	0.249
75	75	0.00862
76	76	0.159
77	77	0.613
78	78	0.169
79	79	0.623
8	8	0.2
80	80	0.37
81	81	0.409
82	82	0.603
83	83	0.828
84	84	0.841
85	85	0.772
86	86	0.315
87	87	0.0177
88	88	0.596
89	89	0.983
9	9	0.956
90	90	0.0555
91	91	0.301
92	92	0.967
93	93	0.331
94	94	0.0491
95	95	0.0047
96	96	0.248
97	97	0.939
98	98	0.337
99	99	0.199

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11766

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010058 human trachea - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0003126 (trachea)
0003127 (open tracheal system trachea)
0002100 (trunk)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010058 (human trachea - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005467
+|accession_numbers=CAGE;DRX008754;DRR009626;DRZ001051;DRZ002436;DRZ012401;DRZ013786
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0003126,UBERON:0003127,UBERON:0002100,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.26!178.97!EHF;;chr1:201979703..201979721,+!p2@ELF3!1.94!85.49!ELF3;;chr1:201979743..201979762,+!p1@ELF3!1.90!78.18!ELF3;;chr6:34524093..34524135,-!p1@SPDEF!1.90!77.84!SPDEF;;chr19:46801639..46801699,+!p1@HIF3A!1.82!64.54!HIF3A;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.78!59.55!PEG3;;chr22:29196433..29196445,-!p4@XBP1!1.70!54.22!XBP1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.69!47.90!TFCP2L1;;chr12:52437488..52437507,+!p2@NR4A1!1.68!46.57!NR4A1;;chr15:42749722..42749739,-!p2@ZFP106!1.63!73.85!ZFP106;;chr11:113930425..113930471,+!p1@ZBTB16!1.60!55.22!ZBTB16;;chr2:19558373..19558392,-!p1@OSR1!1.51!83.83!OSR1;;chr5:158526917..158526932,-!p1@EBF1!1.51!75.51!EBF1;;chr1:170632285..170632309,+!p1@PRRX1!1.50!34.60!PRRX1;;chr8:23540441..23540466,-!p1@NKX3-1!1.47!55.89!NKX3-1;;chr6:1312325..1312340,+!p1@FOXQ1!1.46!44.91!FOXQ1;;chr8:25902876..25902936,-!p1@EBF2!1.46!27.94!EBF2;;chr17:53342311..53342400,+!p1@HLF!1.45!31.27!HLF;;chr11:34535297..34535317,-!p1@ELF5!1.41!24.62!ELF5;;chr22:38380543..38380569,-!p1@SOX10!1.40!24.28!SOX10;;chr3:181429704..181429722,+!p1@SOX2!1.40!23.95!SOX2;;chr1:40105299..40105326,-!p1@HEYL!1.40!23.95!HEYL;;chr20:62680984..62680999,-!p1@SOX18!1.38!30.60!SOX18;;chr14:37131058..37131139,+!p1@PAX9!1.38!22.95!PAX9;;chrY:21906594..21906622,-!p1@KDM5D!1.38!22.95!KDM5D;;chr6:134210243..134210257,+!p1@TCF21!1.37!22.29!TCF21;;chr14:38064429..38064486,-!p1@FOXA1!1.36!21.96!FOXA1;;chr19:46800289..46800327,+!p2@HIF3A!1.34!20.96!HIF3A;;chr21:39870339..39870443,-!p1@ERG!1.34!20.96!ERG;;chr17:74137321..74137337,-!p1@FOXJ1!1.33!20.62!FOXJ1;;chr17:80797886..80797906,-!p1@ZNF750!1.33!20.29!ZNF750;;chr11:34642656..34642667,+!p2@EHF!1.33!20.29!EHF;;chr22:29196492..29196503,-!p3@XBP1!1.31!30.27!XBP1;;chr5:2751762..2751784,-!p1@IRX2!1.31!19.29!IRX2;;chr7:15726296..15726315,-!p1@MEOX2!1.30!18.96!MEOX2;;chr7:73038839..73038862,-!p1@MLXIPL!1.29!18.63!MLXIPL;;chr10:131762504..131762555,-!p1@EBF3!1.29!18.30!EBF3;;chr16:79634624..79634642,-!p1@MAF!1.27!67.86!MAF;;chr14:61116183..61116208,-!p1@SIX1!1.27!65.87!SIX1;;chr7:113726357..113726443,+!p1@FOXP2!1.27!30.27!FOXP2;;chr8:102504651..102504683,+!p1@GRHL2!1.27!17.63!GRHL2;;chr11:129245526..129245553,+!p1@BARX2!1.27!17.63!BARX2;;chr8:10588010..10588030,-!p1@SOX7!1.25!16.63!SOX7;;chr7:100065686..100065701,-!p2@TSC22D4!1.24!16.30!TSC22D4;;chr6:1389789..1389821,+!p1@FOXF2!1.23!21.96!FOXF2;;chr1:170633348..170633399,+!p2@PRRX1!1.23!21.62!PRRX1;;chr1:209979467..209979494,-!p1@IRF6!1.23!17.96!IRF6;;chr1:203055129..203055147,-!p1@MYOG!1.23!15.97!MYOG;;chr5:134369879..134369898,-!p2@PITX1!1.23!15.97!PITX1;;chr7:19157248..19157268,-!p1@TWIST1!1.22!43.25!TWIST1;;chr1:61548374..61548415,+!p4@NFIA!1.21!28.28!NFIA;;chr18:22932080..22932170,-!p1@ZNF521!1.20!62.87!ZNF521;;chr3:189507432..189507459,+!p1@TP63!1.20!14.97!TP63;;chr1:61548225..61548299,+!p1@NFIA!1.18!180.30!NFIA;;chr11:34535332..34535347,-!p2@ELF5!1.18!14.30!ELF5;;chr20:50179368..50179392,-!p2@NFATC2!1.17!17.63!NFATC2;;chr9:132427883..132427951,+!p2@PRRX2!1.17!13.64!PRRX2;;chr22:19748231..19748317,+!p1@TBX1!1.17!13.64!TBX1;;chr4:57547454..57547469,-!p1@HOPX!1.17!13.64!HOPX;;chr6:144329384..144329405,-!p1@PLAGL1!1.16!155.02!PLAGL1;;chr11:34645791..34645836,+!p3@EHF!1.16!13.31!EHF;;chr6:1610293..1610310,+!p1@FOXC1!1.15!21.96!FOXC1;;chr3:126076242..126076257,-!p1@KLF15!1.15!16.30!KLF15;;chr1:170633262..170633285,+!p3@PRRX1!1.15!14.97!PRRX1;;chr3:169381420..169381535,-!p1@MECOM!1.14!14.97!MECOM;;chr16:86544113..86544145,+!p1@FOXF1!1.12!15.30!FOXF1;;chr8:55370487..55370503,+!p1@SOX17!1.12!12.31!SOX17;;chr9:102584159..102584174,+!p2@NR4A3!1.11!21.29!NR4A3;;chr20:55204351..55204377,+!p1@TFAP2C!1.11!15.30!TFAP2C;;chr2:145277882..145277967,-!p3@ZEB2!1.10!20.29!ZEB2;;chr18:45663490..45663528,-!p2@ZBTB7C!1.10!11.64!ZBTB7C;;chr8:106330656..106330684,+!p1@ZFPM2!1.09!29.94!ZFPM2;;chr13:73633131..73633149,+!p1@KLF5!1.08!118.09!KLF5;;chr16:79634595..79634620,-!p2@MAF!1.08!20.29!MAF;;chr6:34524049..34524089,-!p2@SPDEF!1.08!10.98!SPDEF;;chr7:97840743..97840786,+!p1@BHLHA15!1.08!10.98!BHLHA15;;chr1:151804244..151804310,-!p1@RORC!1.08!10.98!RORC;;chr17:1959369..1959388,+!p2@HIC1!1.07!28.28!HIC1;;chr11:125034640..125034655,+!p1@PKNOX2!1.07!10.65!PKNOX2;;chr2:66662281..66662308,+!p1@MEIS1!1.06!36.93!MEIS1;;chr15:57511609..57511651,+!p2@TCF12!1.06!17.63!TCF12;;chr1:61548069..61548102,+!p3@NFIA!1.05!24.95!NFIA;;chr3:114819124..114819200,-!p3@ZBTB20!1.05!24.28!ZBTB20;;chr6:144289132..144289134,-!p3@PLAGL1!1.05!24.28!PLAGL1;;chr3:126076264..126076305,-!p2@KLF15!1.05!14.30!KLF15;;chr9:132427972..132428056,+!p1@PRRX2!1.05!13.31!PRRX2;;chr8:93107451..93107468,-!p2@RUNX1T1!1.05!10.31!RUNX1T1;;chr15:96873984..96873999,+!p3@NR2F2!1.04!73.85!NR2F2;;chr5:50679228..50679288,+!p1@ISL1!1.04!9.98!ISL1;;chr1:170632683..170632696,+!p12@PRRX1!1.04!9.98!PRRX1;;chr2:180524914..180524925,-!p17@ZNF385B!1.04!9.98!ZNF385B;;chr3:181429741..181429767,+!p2@SOX2!1.04!9.98!SOX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.03!51.56!CREB3L1;;chr1:214161272..214161322,+!p1@PROX1!1.03!13.64!PROX1;;chr16:1031762..1031781,+!p1@SOX8!1.03!9.65!SOX8;;chr12:96588368..96588394,+!p3@ELK3!1.02!25.95!ELK3;;chr5:134369905..134369972,-!p1@PITX1!1.00!13.97!PITX1;;chr5:2751785..2751808,-!p2@IRX2!1.00!8.98!IRX2;;chr12:24102576..24102623,-!p2@SOX5!1.00!8.98!SOX5;;chr17:41739283..41739297,-!p1@MEOX1!1.00!8.98!MEOX1;;chr22:29196547..29196563,-!p2@XBP1!0.99!327.67!XBP1;;chr4:174451370..174451387,-!p1@HAND2!0.98!8.65!HAND2;;chr11:113930401..113930422,+!p3@ZBTB16!0.98!8.65!ZBTB16;;chr5:158527104..158527135,-!p4@EBF1!0.98!8.65!EBF1;;chr5:172662197..172662216,-!p1@NKX2-5!0.98!8.65!NKX2-5;;chr9:14180778..14180808,-!p15@NFIB!0.98!8.65!NFIB;;chr6:19837592..19837621,+!p1@ID4!0.97!52.89!ID4;;chr2:60780753..60780800,-!p1@BCL11A!0.97!42.58!BCL11A;;chr11:46299539..46299620,+!p2@CREB3L1!0.97!14.30!CREB3L1;;chr2:10091815..10091864,+!p1@GRHL1!0.97!11.31!GRHL1;;chr3:21792682..21792720,-!p1@ZNF385D!0.97!8.32!ZNF385D;;chr12:81101404..81101421,+!p1@MYF6!0.97!8.32!MYF6;;chr21:38071430..38071456,+!p1@SIM2!0.97!8.32!SIM2;;chr18:77155922..77155939,+!p1@NFATC1!0.96!22.62!NFATC1;;chr6:91006518..91006570,-!p1@BACH2!0.96!18.96!BACH2;;chr20:51588873..51588953,+!p1@TSHZ2!0.96!10.98!TSHZ2;;chr1:170632959..170632987,+!p4@PRRX1!0.96!8.98!PRRX1;;chrX:131623044..131623089,-!p1@MBNL3!0.95!34.26!MBNL3;;chr18:42260840..42260860,+!p2@SETBP1!0.95!7.98!SETBP1;;chr8:93115274..93115323,-!p4@RUNX1T1!0.95!7.98!RUNX1T1;;chr9:14314131..14314147,-!p2@NFIB!0.94!44.91!NFIB;;chr1:61547894..61547968,+!p2@NFIA!0.94!22.95!NFIA;;chr13:72441315..72441454,-!p1@DACH1!0.94!15.97!DACH1;;chr8:99956662..99956684,+!p1@OSR2!0.94!11.98!OSR2;;chr5:158526459..158526481,-!p2@EBF1!0.94!10.31!EBF1;;chr12:125003087..125003141,-!p4@NCOR2!0.94!9.98!NCOR2;;chr13:72441074..72441172,-!p2@DACH1!0.94!7.65!DACH1;;chr3:114866084..114866118,-!p2@ZBTB20!0.93!28.28!ZBTB20;;chr2:239756671..239756732,+!p1@TWIST2!0.93!24.95!TWIST2;;chr1:61924375..61924380,+!p6@NFIA!0.93!10.65!NFIA;;chrX:107018969..107019024,-!p6@TSC22D3!0.93!10.65!TSC22D3;;chr19:13134772..13134822,+!p2@NFIX!0.92!10.98!NFIX;;chr2:45236540..45236577,-!p1@SIX2!0.92!7.32!SIX2;;chr3:114819101..114819121,-!p7@ZBTB20!0.92!7.32!ZBTB20;;chr12:81110684..81110700,+!p1@MYF5!0.92!7.32!MYF5;;chr1:170632477..170632506,+!p6@PRRX1!0.92!7.32!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.92!7.32!PRRX1;;chr17:70117153..70117174,+!p1@SOX9!0.91!77.51!SOX9;;chr2:66662249..66662267,+!p2@MEIS1!0.91!28.61!MEIS1;;chr3:21792585..21792625,-!p2@ZNF385D!0.91!7.98!ZNF385D;;chr17:7492684..7492778,-!p2@SOX15!0.90!14.97!SOX15;;chr6:91006575..91006602,-!p2@BACH2!0.90!10.65!BACH2;;chr5:71803177..71803255,-!p1@ZNF366!0.90!6.99!ZNF366;;chr7:15726243..15726293,-!p2@MEOX2!0.90!6.99!MEOX2;;chr7:27142290..27142310,-!p1@HOXA2!0.90!6.99!HOXA2;;chr6:10412600..10412637,-!p1@TFAP2A!0.89!11.64!TFAP2A;;chr8:80679993..80680011,-!p1@HEY1!0.89!9.98!HEY1;;chr8:48650715..48650735,-!p1@CEBPD!0.88!889.53!CEBPD;;chr7:44143925..44143970,+!p1@AEBP1!0.88!156.02!AEBP1;;chr3:12330560..12330579,+!p1@PPARG!0.88!7.65!PPARG;;chr2:66662396..66662407,+!p4@MEIS1!0.88!6.65!MEIS1;;chr5:3595977..3595999,+!p1@IRX1!0.88!6.65!IRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.88!6.65!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.88!6.65!ZFY;;chr7:44143997..44144008,+!p3@AEBP1!0.87!8.32!AEBP1;;chr1:61547405..61547434,+!p11@NFIA!0.86!6.32!NFIA;;chr2:145277640..145277771,-!p1@ZEB2!0.85!87.49!ZEB2;;chr1:164528410..164528428,+!p1@PBX1!0.84!47.24!PBX1;;chr10:70320074..70320106,+!p1@TET1!0.84!12.31!TET1;;chr11:113930291..113930339,+!p2@ZBTB16!0.84!9.98!ZBTB16;;chrX:84498989..84499003,+!p1@ZNF711!0.84!8.32!ZNF711;;chr14:29235961..29236008,+!p1@FOXG1!0.84!5.99!FOXG1;;chr9:14314566..14314618,-!p1@NFIB!0.83!74.85!NFIB;;chr5:88178983..88179012,-!p1@MEF2C!0.83!47.24!MEF2C;;chr4:38665883..38665922,+!p3@KLF3!0.83!22.95!KLF3;;chr2:46524897..46524911,+!p2@EPAS1!0.83!16.97!EPAS1;;chr15:61521417..61521460,-!p2@RORA!0.83!13.64!RORA;;chr2:66662895..66662907,+!p3@MEIS1!0.83!7.32!MEIS1;;chr8:106330696..106330719,+!p2@ZFPM2!0.82!7.32!ZFPM2;;chr9:16870659..16870675,-!p2@BNC2!0.82!6.99!BNC2;;chrY:21906761..21906810,-!p2@KDM5D!0.82!5.66!KDM5D;;chr5:3595934..3595957,+!p2@IRX1!0.82!5.66!IRX1;;chr9:100615499..100615519,+!p1@FOXE1!0.82!5.66!FOXE1;;chr1:10856639..10856662,-!p2@CASZ1!0.82!5.66!CASZ1;;chr1:170632439..170632465,+!p11@PRRX1!0.82!5.66!PRRX1;;chr3:71632864..71632885,-!p4@FOXP1!0.81!19.96!FOXP1;;chr16:54320675..54320715,-!p1@IRX3!0.81!12.31!IRX3;;chr2:166326200..166326216,+!p1@CSRNP3!0.81!8.32!CSRNP3;;chr9:14083467..14083483,-!p4@NFIB!0.80!13.97!NFIB;;chr3:71355163..71355209,-!p5@FOXP1!0.80!7.65!FOXP1;;chr19:57183114..57183145,-!p1@ZNF835!0.80!5.99!ZNF835;;chr1:216978721..216978728,-!p13@ESRRG!0.80!5.32!ESRRG;;chr20:51589133..51589159,+!p2@TSHZ2!0.80!5.32!TSHZ2;;chr22:41763452..41763466,+!p2@TEF!0.80!5.32!TEF;;chr3:25470156..25470227,+!p2@RARB!0.80!5.32!RARB;;chr6:152011654..152011682,+!p1@ESR1!0.80!5.32!ESR1;;chrX:106960285..106960299,-!p1@TSC22D3!0.79!152.03!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003126;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947
+|ffid_belonging_in_development=UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/trachea%252c%2520fetal%252c%2520donor1.CNhs11766.10058-101H4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10058-101H4
 |is_a=EFO:0002091;;FF:0010058
 |is_obsolete=
+|library_id=CNhs11766
+|library_id_phase_based=2:CNhs11766
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10058
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10058
 |name=trachea, fetal, donor1
 |namespace=FANTOM5
@@ Line 45: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11766,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=101
 |rna_catalog_number=Cat:RtHFN: Trachea
@@ Line 60: / Line 79: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 81: / Line 101: @@
 |top_motifs=ZNF384:3.37911398153;TBP:3.33213708954;MEF2{A,B,C,D}:3.13503764265;SOX5:2.8565356611;MYBL2:2.63113227017;TAL1_TCF{3,4,12}:2.43662599355;IKZF2:2.37208824102;FOXL1:2.2813696425;SPZ1:2.23478172335;MAZ:2.15544766394;HMGA1,2:2.05051182377;GCM1,2:2.02954183912;GLI1..3:1.96940907822;LMO2:1.95942733428;EP300:1.91367094479;ZIC1..3:1.8815383318;AIRE:1.85854818792;HIC1:1.82414837678;GATA4:1.75684806398;IKZF1:1.70014120709;ATF6:1.69581337396;HOX{A4,D4}:1.6849171162;NR1H4:1.6695324384;PATZ1:1.64091088397;TFAP2{A,C}:1.61487190934;BPTF:1.61317965476;TOPORS:1.58929931504;KLF4:1.58803684553;DBP:1.56444159108;XBP1:1.55882441565;SMAD1..7,9:1.5553612227;MZF1:1.54559275065;FOXP1:1.53885154464;TLX1..3_NFIC{dimer}:1.49552241165;RXRA_VDR{dimer}:1.47472327454;SP1:1.46891818563;NFATC1..3:1.46498381416;TLX2:1.43460585069;NR6A1:1.42295138086;MED-1{core}:1.41584823782;PRDM1:1.3935144786;POU6F1:1.39215844227;TBX4,5:1.38114870111;SNAI1..3:1.38110077579;TFCP2:1.37113739537;GTF2I:1.36056944489;FOXO1,3,4:1.35039762269;ESR1:1.34438033449;EGR1..3:1.26478251629;TGIF1:1.2508099307;NKX2-1,4:1.21685578984;TFAP4:1.21588548138;ZNF238:1.21514365375;MYFfamily:1.19081728231;FOXM1:1.1789191772;FOXA2:1.16617950246;TEAD1:1.16123088489;GFI1B:1.13556848853;PAX5:1.13402177345;SRF:1.12987534638;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.10302017333;POU3F1..4:1.1006406376;FOX{D1,D2}:1.0785687995;TFAP2B:1.07314066282;ZNF423:1.05319742342;MTF1:1.02713468936;FOXD3:1.02558575533;ATF2:1.01791908987;LHX3,4:1.01488586108;CDC5L:1.00125202731;RBPJ:0.996944665513;PAX6:0.929518960811;NKX3-2:0.929295801253;BREu{core}:0.928147915681;GTF2A1,2:0.911499108816;NKX3-1:0.896123312115;RREB1:0.881445259997;NR5A1,2:0.845836348974;RFX2..5_RFXANK_RFXAP:0.832521726715;XCPE1{core}:0.82477810927;ZEB1:0.824417085492;MYOD1:0.822700537179;MTE{core}:0.819907540486;NKX2-3_NKX2-5:0.811569277739;HMX1:0.795095750833;AR:0.793400008741;RFX1:0.767878194767;UFEwm:0.735878837468;NHLH1,2:0.722808754327;CDX1,2,4:0.715169266247;ZBTB16:0.685613776616;SOX2:0.68460400754;IRF7:0.683123488934;CUX2:0.676075355244;PITX1..3:0.673289265316;HOX{A6,A7,B6,B7}:0.663572515927;T:0.634181631323;POU5F1:0.568675321468;PBX1:0.558334239704;ALX4:0.548336043739;HSF1,2:0.548178254908;POU1F1:0.541500693428;MAFB:0.532110411176;NKX6-1,2:0.527392813563;VSX1,2:0.513849138997;GZF1:0.460515674176;RORA:0.445021225829;ZFP161:0.434123569573;FOXQ1:0.431221027115;REST:0.424964734931;STAT2,4,6:0.406174227011;ZNF148:0.371083527646;GATA6:0.365201288121;SOX{8,9,10}:0.362044844861;GFI1:0.355011619209;NR3C1:0.323309177561;TEF:0.297527422453;FOXN1:0.263655986751;FOX{F1,F2,J1}:0.258174663954;HAND1,2:0.244136771492;SOX17:0.238157208402;HIF1A:0.16032463936;ALX1:0.145237897366;JUN:0.109452678426;TP53:0.0806845658233;NFIX:0.0685322919983;NANOG:0.0635219890316;EVI1:0.053708282759;NANOG{mouse}:0.0422687760758;ARID5B:0.0371821021905;HES1:0.0205911009494;ZBTB6:0.0033614982527;IRF1,2:-0.0312777530062;ETS1,2:-0.0664351213658;ESRRA:-0.0694522520736;NFIL3:-0.0779604149562;HBP1_HMGB_SSRP1_UBTF:-0.117706668405;NFE2L1:-0.14564825856;HOX{A5,B5}:-0.149544317826;EBF1:-0.153084569241;FOXP3:-0.173398890688;LEF1_TCF7_TCF7L1,2:-0.205280509099;PAX4:-0.214839546699;RXR{A,B,G}:-0.227579202714;PAX1,9:-0.233677171485;YY1:-0.235205460457;ZNF143:-0.238197166053;PDX1:-0.24460794687;FOX{I1,J2}:-0.251030656705;STAT1,3:-0.25189224256;STAT5{A,B}:-0.277061856536;HNF1A:-0.279757787543;DMAP1_NCOR{1,2}_SMARC:-0.330849482926;CREB1:-0.337688299097;SPI1:-0.375585054685;ELF1,2,4:-0.425512548963;EN1,2:-0.462220033854;ATF4:-0.490246360398;SREBF1,2:-0.492102713404;HNF4A_NR2F1,2:-0.499858573789;NKX2-2,8:-0.505101741067;SPIB:-0.534132209612;ADNP_IRX_SIX_ZHX:-0.53617083546;NFY{A,B,C}:-0.549528679346;PAX2:-0.568623504601;FOSL2:-0.570955126351;CEBPA,B_DDIT3:-0.581804358359;TFDP1:-0.608191016443;NFKB1_REL_RELA:-0.628283232209;E2F1..5:-0.633478767073;PRRX1,2:-0.636938058804;NRF1:-0.641667302953;PAX3,7:-0.65809284805;HLF:-0.672482904884;ATF5_CREB3:-0.691586563057;OCT4_SOX2{dimer}:-0.697414898851;ONECUT1,2:-0.705293181278;POU2F1..3:-0.727686287844;FOS_FOS{B,L1}_JUN{B,D}:-0.755360315454;AHR_ARNT_ARNT2:-0.782348362933;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.809641725;CRX:-0.8100543311;BACH2:-0.84075484586;RUNX1..3:-0.876438134273;HOXA9_MEIS1:-0.884618288991;bHLH_family:-0.94383682562;NFE2:-1.04384847733;NFE2L2:-1.05704194262;MYB:-1.33114768654;ELK1,4_GABP{A,B1}:-1.35543755196;PAX8:-1.41323233027;PPARG:-1.73482606635
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10058-101H4;search_select_hide=table117:FF:10058-101H4
 }}

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FF:10058-101H4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:18, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0