FF:10151-102I7: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005342 | ||
|ancestors_in_cell_lineage_facet= | |HumanCAGEScanFiles=NCig10024;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/amygdala%252c%2520adult%252c%2520donor10252.NCig10024.10151-102I7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/amygdala%252c%2520adult%252c%2520donor10252.NCig10024.10151-102I7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/amygdala%252c%2520adult%252c%2520donor10252.NCig10024.10151-102I7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/amygdala%252c%2520adult%252c%2520donor10252.NCig10024.10151-102I7.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX008618;DRR009490;DRZ000915;DRZ002300;DRZ012265;DRZ013650 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001871,UBERON:0001876,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950,UBERON:0000349,UBERON:0010011,UBERON:0000454 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010151 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/amygdala%252c%2520adult%252c%2520donor10252.CNhs12311.10151-102I7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/amygdala%252c%2520adult%252c%2520donor10252.CNhs12311.10151-102I7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/amygdala%252c%2520adult%252c%2520donor10252.CNhs12311.10151-102I7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/amygdala%252c%2520adult%252c%2520donor10252.CNhs12311.10151-102I7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/amygdala%252c%2520adult%252c%2520donor10252.CNhs12311.10151-102I7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10151-102I7 | |id=FF:10151-102I7 | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |is_a=EFO:0002091;;FF:0000002;;FF:0010151 | ||
|is_obsolete= | |||
|library_id=CNhs12311 | |||
|library_id_phase_based=2:CNhs12311 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10151 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10151 | |||
|name=amygdala, adult, donor10252 | |name=amygdala, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=NCig10024,,, | |profile_cagescan=NCig10024,,, | ||
|profile_hcage=CNhs12311,LSID913,release011,COMPLETED | |profile_hcage=CNhs12311,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=102 | |rna_box=102 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=59.61975 | |rna_weight_ug=59.61975 | ||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 93: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.850659674102e-282!GO:0005737;cytoplasm;6.30522867932427e-147!GO:0043226;organelle;3.17386052282538e-97!GO:0043229;intracellular organelle;8.90729435637343e-97!GO:0043227;membrane-bound organelle;4.52334187291667e-90!GO:0043231;intracellular membrane-bound organelle;6.83883873698074e-90!GO:0044444;cytoplasmic part;7.67597983030042e-89!GO:0005515;protein binding;1.10990527379022e-74!GO:0044422;organelle part;4.60657012347414e-59!GO:0044446;intracellular organelle part;3.96283068767069e-58!GO:0032991;macromolecular complex;8.8453325060685e-57!GO:0016043;cellular component organization and biogenesis;9.42418098711389e-48!GO:0030529;ribonucleoprotein complex;1.1714824886242e-37!GO:0003723;RNA binding;3.75128630798445e-37!GO:0033036;macromolecule localization;3.75323660747773e-36!GO:0015031;protein transport;1.40418231411422e-35!GO:0005739;mitochondrion;2.37895477989885e-34!GO:0008104;protein localization;1.18467894462867e-32!GO:0045184;establishment of protein localization;3.68619612970576e-32!GO:0043234;protein complex;1.36870637038966e-31!GO:0031090;organelle membrane;1.44868225796339e-31!GO:0043233;organelle lumen;1.80914068688301e-30!GO:0031974;membrane-enclosed lumen;1.80914068688301e-30!GO:0044428;nuclear part;2.30688471621277e-30!GO:0046907;intracellular transport;3.06222042616948e-29!GO:0016192;vesicle-mediated transport;1.00101480293496e-27!GO:0051649;establishment of cellular localization;1.1312567667327e-27!GO:0051641;cellular localization;2.40703418866499e-27!GO:0044238;primary metabolic process;1.55558964924958e-25!GO:0016071;mRNA metabolic process;1.76707769284243e-25!GO:0044429;mitochondrial part;3.55264963185533e-25!GO:0005634;nucleus;6.99788405136455e-25!GO:0043170;macromolecule metabolic process;6.99788405136455e-25!GO:0019538;protein metabolic process;6.67554557006692e-24!GO:0044237;cellular metabolic process;7.70117492055639e-24!GO:0031975;envelope;2.69351391699438e-23!GO:0031967;organelle envelope;3.66343006703355e-23!GO:0005829;cytosol;3.84780433394331e-23!GO:0008380;RNA splicing;5.74521585362851e-23!GO:0006396;RNA processing;2.02317818358537e-22!GO:0006886;intracellular protein transport;5.5946623104489e-21!GO:0044260;cellular macromolecule metabolic process;1.0378220707248e-20!GO:0006397;mRNA processing;1.66346522202729e-20!GO:0006996;organelle organization and biogenesis;4.37961317420582e-20!GO:0044267;cellular protein metabolic process;4.84813467148346e-20!GO:0005840;ribosome;1.16203042452634e-19!GO:0006119;oxidative phosphorylation;2.20307908019562e-19!GO:0031981;nuclear lumen;4.1036998967522e-19!GO:0005740;mitochondrial envelope;1.72296384116881e-18!GO:0031966;mitochondrial membrane;2.8442355209244e-18!GO:0005794;Golgi apparatus;3.24636883506893e-18!GO:0000166;nucleotide binding;1.59655891123103e-17!GO:0031982;vesicle;2.51546366230547e-17!GO:0019866;organelle inner membrane;8.13587222656404e-17!GO:0043283;biopolymer metabolic process;1.41980565465295e-16!GO:0031410;cytoplasmic vesicle;1.41980565465295e-16!GO:0065003;macromolecular complex assembly;3.12392143114735e-16!GO:0031988;membrane-bound vesicle;3.57560337107387e-16!GO:0005743;mitochondrial inner membrane;4.06314328923655e-16!GO:0006412;translation;7.16374913507257e-16!GO:0005681;spliceosome;1.60801261484216e-15!GO:0016023;cytoplasmic membrane-bound vesicle;1.84373078950564e-15!GO:0003735;structural constituent of ribosome;2.97305901726209e-15!GO:0044455;mitochondrial membrane part;2.37247391206105e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.14926378296365e-14!GO:0022607;cellular component assembly;3.33161166923216e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;3.63387630245998e-14!GO:0016462;pyrophosphatase activity;3.7066151600336e-14!GO:0006512;ubiquitin cycle;5.56761023443038e-14!GO:0043412;biopolymer modification;5.96476417167734e-14!GO:0043687;post-translational protein modification;7.46127753923085e-14!GO:0017111;nucleoside-triphosphatase activity;1.40493223127306e-13!GO:0045045;secretory pathway;1.46893233905641e-13!GO:0005746;mitochondrial respiratory chain;1.69799841114327e-13!GO:0006464;protein modification process;2.48773254010096e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.50886502313159e-13!GO:0032553;ribonucleotide binding;2.62034680558919e-13!GO:0032555;purine ribonucleotide binding;2.62034680558919e-13!GO:0007264;small GTPase mediated signal transduction;2.62094670989579e-13!GO:0050136;NADH dehydrogenase (quinone) activity;3.28079143796176e-13!GO:0003954;NADH dehydrogenase activity;3.28079143796176e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.28079143796176e-13!GO:0033279;ribosomal subunit;4.00529816945992e-13!GO:0030695;GTPase regulator activity;6.58589639063768e-13!GO:0005654;nucleoplasm;7.5202727070001e-13!GO:0017076;purine nucleotide binding;2.9028049534372e-12!GO:0010467;gene expression;6.75961697134935e-12!GO:0048770;pigment granule;6.75961697134935e-12!GO:0042470;melanosome;6.75961697134935e-12!GO:0044451;nucleoplasm part;8.37428521525339e-12!GO:0009058;biosynthetic process;1.0676568560305e-11!GO:0006457;protein folding;1.58339893973836e-11!GO:0006793;phosphorus metabolic process;1.80647447274959e-11!GO:0006796;phosphate metabolic process;1.80647447274959e-11!GO:0008134;transcription factor binding;2.69568044328779e-11!GO:0016874;ligase activity;3.05385934315653e-11!GO:0030964;NADH dehydrogenase complex (quinone);3.05385934315653e-11!GO:0045271;respiratory chain complex I;3.05385934315653e-11!GO:0005747;mitochondrial respiratory chain complex I;3.05385934315653e-11!GO:0009059;macromolecule biosynthetic process;4.01990879027218e-11!GO:0012505;endomembrane system;4.44856007022704e-11!GO:0042775;organelle ATP synthesis coupled electron transport;6.1774720194856e-11!GO:0042773;ATP synthesis coupled electron transport;6.1774720194856e-11!GO:0048193;Golgi vesicle transport;7.34127135894967e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.09238516307586e-11!GO:0005083;small GTPase regulator activity;1.07152914625585e-10!GO:0043228;non-membrane-bound organelle;1.37877379417312e-10!GO:0043232;intracellular non-membrane-bound organelle;1.37877379417312e-10!GO:0044445;cytosolic part;1.59582310183698e-10!GO:0044249;cellular biosynthetic process;2.34221282317072e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;2.77974158139068e-10!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.14723000472944e-10!GO:0006511;ubiquitin-dependent protein catabolic process;3.3399341683036e-10!GO:0008092;cytoskeletal protein binding;3.72071155254364e-10!GO:0019941;modification-dependent protein catabolic process;4.02314263728184e-10!GO:0043632;modification-dependent macromolecule catabolic process;4.02314263728184e-10!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.07069714543241e-10!GO:0044257;cellular protein catabolic process;6.66830808570443e-10!GO:0007010;cytoskeleton organization and biogenesis;6.95149414331703e-10!GO:0007399;nervous system development;7.49592920983395e-10!GO:0003924;GTPase activity;9.15643944485429e-10!GO:0030135;coated vesicle;9.66771484119905e-10!GO:0005768;endosome;1.25802264578313e-09!GO:0019829;cation-transporting ATPase activity;1.38007953167523e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.48259781224565e-09!GO:0044265;cellular macromolecule catabolic process;1.63291707854044e-09!GO:0006605;protein targeting;1.76532267374023e-09!GO:0022618;protein-RNA complex assembly;1.76532267374023e-09!GO:0016044;membrane organization and biogenesis;2.02272470941038e-09!GO:0051082;unfolded protein binding;2.59606923521935e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.64972922848442e-09!GO:0006810;transport;3.11338951140116e-09!GO:0032940;secretion by cell;4.18224040988724e-09!GO:0031980;mitochondrial lumen;4.61791295291219e-09!GO:0005759;mitochondrial matrix;4.61791295291219e-09!GO:0000502;proteasome complex (sensu Eukaryota);5.19542219572246e-09!GO:0008565;protein transporter activity;5.31657572389639e-09!GO:0030036;actin cytoskeleton organization and biogenesis;8.13306753595335e-09!GO:0005525;GTP binding;9.5052788227752e-09!GO:0043285;biopolymer catabolic process;1.05583614616982e-08!GO:0016604;nuclear body;1.69904023287764e-08!GO:0016310;phosphorylation;1.94262838837127e-08!GO:0008135;translation factor activity, nucleic acid binding;2.05418562210562e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.05956449423985e-08!GO:0006461;protein complex assembly;3.75280670214822e-08!GO:0019899;enzyme binding;4.16969706144813e-08!GO:0030163;protein catabolic process;4.79767350849743e-08!GO:0032559;adenyl ribonucleotide binding;6.31142842077577e-08!GO:0008639;small protein conjugating enzyme activity;6.92507618374196e-08!GO:0016607;nuclear speck;7.72128428498179e-08!GO:0004842;ubiquitin-protein ligase activity;9.12681384616723e-08!GO:0051179;localization;9.49116600923171e-08!GO:0015986;ATP synthesis coupled proton transport;9.49116600923171e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.49116600923171e-08!GO:0007242;intracellular signaling cascade;1.00711517465464e-07!GO:0048523;negative regulation of cellular process;1.11792763130291e-07!GO:0015935;small ribosomal subunit;1.24607261137911e-07!GO:0030029;actin filament-based process;1.28669600882711e-07!GO:0044431;Golgi apparatus part;1.32070170453264e-07!GO:0043005;neuron projection;1.52439399883219e-07!GO:0005524;ATP binding;1.92462108092384e-07!GO:0032561;guanyl ribonucleotide binding;2.16506005104902e-07!GO:0019001;guanyl nucleotide binding;2.16506005104902e-07!GO:0019787;small conjugating protein ligase activity;2.16506005104902e-07!GO:0019717;synaptosome;2.33112221333405e-07!GO:0009057;macromolecule catabolic process;3.25910773219013e-07!GO:0031252;leading edge;3.79622456741176e-07!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.87727864461689e-07!GO:0030554;adenyl nucleotide binding;5.05244469459622e-07!GO:0051234;establishment of localization;5.08677296991497e-07!GO:0006913;nucleocytoplasmic transport;5.49961359570466e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;5.9979582210684e-07!GO:0000375;RNA splicing, via transesterification reactions;5.9979582210684e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.9979582210684e-07!GO:0044248;cellular catabolic process;6.72421724130843e-07!GO:0030136;clathrin-coated vesicle;8.57170683043687e-07!GO:0006446;regulation of translational initiation;8.74550330199946e-07!GO:0005783;endoplasmic reticulum;8.98492786697203e-07!GO:0007265;Ras protein signal transduction;9.15103511544033e-07!GO:0051169;nuclear transport;9.24783146443254e-07!GO:0008047;enzyme activator activity;1.1739597421002e-06!GO:0044440;endosomal part;1.40255257625457e-06!GO:0010008;endosome membrane;1.40255257625457e-06!GO:0015630;microtubule cytoskeleton;1.76288703144371e-06!GO:0008287;protein serine/threonine phosphatase complex;1.87472269178017e-06!GO:0046034;ATP metabolic process;1.89689796938276e-06!GO:0015934;large ribosomal subunit;2.49954683080021e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.8086307784868e-06!GO:0003712;transcription cofactor activity;2.82300580628529e-06!GO:0006897;endocytosis;3.04281993460432e-06!GO:0010324;membrane invagination;3.04281993460432e-06!GO:0048519;negative regulation of biological process;3.2570156056919e-06!GO:0006754;ATP biosynthetic process;3.50368952501276e-06!GO:0006753;nucleoside phosphate metabolic process;3.50368952501276e-06!GO:0051186;cofactor metabolic process;3.51100715015864e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;3.51767303673921e-06!GO:0048475;coated membrane;3.71783173973612e-06!GO:0030117;membrane coat;3.71783173973612e-06!GO:0005096;GTPase activator activity;3.7344208839815e-06!GO:0016881;acid-amino acid ligase activity;3.80997372211562e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.31122794063038e-06!GO:0015631;tubulin binding;4.4278888056969e-06!GO:0006413;translational initiation;4.90969034836762e-06!GO:0051056;regulation of small GTPase mediated signal transduction;5.01937346548252e-06!GO:0000902;cell morphogenesis;5.15259207047911e-06!GO:0032989;cellular structure morphogenesis;5.15259207047911e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.23998659395276e-06!GO:0009144;purine nucleoside triphosphate metabolic process;5.23998659395276e-06!GO:0048471;perinuclear region of cytoplasm;5.97608387372184e-06!GO:0005730;nucleolus;5.98018780588221e-06!GO:0003779;actin binding;6.09941250691894e-06!GO:0003743;translation initiation factor activity;6.562535809755e-06!GO:0009199;ribonucleoside triphosphate metabolic process;7.5897360649117e-06!GO:0031965;nuclear membrane;7.7197983026686e-06!GO:0009060;aerobic respiration;7.95081743176545e-06!GO:0005905;coated pit;8.63980979941855e-06!GO:0009141;nucleoside triphosphate metabolic process;8.71299832266575e-06!GO:0015078;hydrogen ion transmembrane transporter activity;9.66006712308534e-06!GO:0005635;nuclear envelope;1.02098884655174e-05!GO:0016564;transcription repressor activity;1.06410865652245e-05!GO:0000139;Golgi membrane;1.06500080059918e-05!GO:0005770;late endosome;1.20210194175772e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.3460143522093e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.3460143522093e-05!GO:0030027;lamellipodium;1.44509471362638e-05!GO:0009150;purine ribonucleotide metabolic process;1.44938633396438e-05!GO:0006163;purine nucleotide metabolic process;1.56057904602126e-05!GO:0016070;RNA metabolic process;1.78132994756887e-05!GO:0042623;ATPase activity, coupled;1.8084887395086e-05!GO:0045333;cellular respiration;1.86157280926334e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.86531634492754e-05!GO:0009152;purine ribonucleotide biosynthetic process;1.86859415160502e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.99715956553175e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.99715956553175e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.05855256609191e-05!GO:0016887;ATPase activity;2.08216712822541e-05!GO:0006164;purine nucleotide biosynthetic process;2.10045431806208e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;2.1644558485707e-05!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.27316577080068e-05!GO:0005761;mitochondrial ribosome;2.85712227614118e-05!GO:0000313;organellar ribosome;2.85712227614118e-05!GO:0017038;protein import;3.03437735273836e-05!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.08726240326765e-05!GO:0016568;chromatin modification;3.14373443770501e-05!GO:0009055;electron carrier activity;3.14373443770501e-05!GO:0005769;early endosome;3.45982259359634e-05!GO:0032446;protein modification by small protein conjugation;3.45982259359634e-05!GO:0005874;microtubule;3.59019626801648e-05!GO:0045259;proton-transporting ATP synthase complex;3.75752557285564e-05!GO:0045786;negative regulation of progression through cell cycle;3.98496798519654e-05!GO:0005085;guanyl-nucleotide exchange factor activity;5.00889882493286e-05!GO:0009259;ribonucleotide metabolic process;5.71371864870784e-05!GO:0030425;dendrite;5.84461327687617e-05!GO:0016567;protein ubiquitination;6.05445941145293e-05!GO:0009966;regulation of signal transduction;6.65101382437451e-05!GO:0050789;regulation of biological process;6.73449756235989e-05!GO:0051128;regulation of cellular component organization and biogenesis;6.85055135340109e-05!GO:0006099;tricarboxylic acid cycle;7.64202569865456e-05!GO:0046356;acetyl-CoA catabolic process;7.64202569865456e-05!GO:0006323;DNA packaging;8.27542774699731e-05!GO:0051246;regulation of protein metabolic process;9.64664494025097e-05!GO:0009109;coenzyme catabolic process;0.000125823294584854!GO:0016301;kinase activity;0.000129830726035161!GO:0030120;vesicle coat;0.000133071916804729!GO:0030662;coated vesicle membrane;0.000133071916804729!GO:0050794;regulation of cellular process;0.000138529618676841!GO:0009260;ribonucleotide biosynthetic process;0.000145159074948919!GO:0006366;transcription from RNA polymerase II promoter;0.000148268174521932!GO:0005798;Golgi-associated vesicle;0.000155389020551952!GO:0004674;protein serine/threonine kinase activity;0.000162398583598775!GO:0045055;regulated secretory pathway;0.000168356395136325!GO:0000245;spliceosome assembly;0.000174932992663438!GO:0005793;ER-Golgi intermediate compartment;0.000185021915102887!GO:0003714;transcription corepressor activity;0.000185689734357826!GO:0048489;synaptic vesicle transport;0.000188925449250933!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000193817033104297!GO:0015399;primary active transmembrane transporter activity;0.000193817033104297!GO:0004721;phosphoprotein phosphatase activity;0.000208253530761677!GO:0000159;protein phosphatase type 2A complex;0.000208561085110638!GO:0006732;coenzyme metabolic process;0.000210280884810499!GO:0008219;cell death;0.000221654875619932!GO:0016265;death;0.000221654875619932!GO:0000151;ubiquitin ligase complex;0.000235849303622984!GO:0008017;microtubule binding;0.000251155591578227!GO:0016311;dephosphorylation;0.00025978437566182!GO:0051187;cofactor catabolic process;0.000262346080214474!GO:0044432;endoplasmic reticulum part;0.000342341425119698!GO:0019208;phosphatase regulator activity;0.000345140375853867!GO:0006084;acetyl-CoA metabolic process;0.000366315782642559!GO:0008154;actin polymerization and/or depolymerization;0.000374189428228461!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000374669483672165!GO:0043492;ATPase activity, coupled to movement of substances;0.000384809657355992!GO:0046578;regulation of Ras protein signal transduction;0.000386666485723039!GO:0005773;vacuole;0.000405347030736771!GO:0007266;Rho protein signal transduction;0.000405347030736771!GO:0008021;synaptic vesicle;0.000428140755896884!GO:0031072;heat shock protein binding;0.000442066553986087!GO:0022890;inorganic cation transmembrane transporter activity;0.000465663002035424!GO:0006403;RNA localization;0.000467198590706588!GO:0007269;neurotransmitter secretion;0.000468050045469234!GO:0012501;programmed cell death;0.000479068325572525!GO:0044453;nuclear membrane part;0.000499981314287594!GO:0006613;cotranslational protein targeting to membrane;0.000502458137694519!GO:0008601;protein phosphatase type 2A regulator activity;0.000512751032788609!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000534829428452599!GO:0006259;DNA metabolic process;0.000535843027682748!GO:0006915;apoptosis;0.000548731504778716!GO:0048468;cell development;0.000564919786299414!GO:0003729;mRNA binding;0.000583936119903696!GO:0050657;nucleic acid transport;0.000594289450685838!GO:0051236;establishment of RNA localization;0.000594289450685838!GO:0050658;RNA transport;0.000594289450685838!GO:0006606;protein import into nucleus;0.000612926974197472!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000624427699702386!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000640888357144903!GO:0043623;cellular protein complex assembly;0.00064142406178021!GO:0005643;nuclear pore;0.000718503762074288!GO:0016197;endosome transport;0.000736314503311333!GO:0016791;phosphoric monoester hydrolase activity;0.000758723564843813!GO:0030133;transport vesicle;0.00076407336241246!GO:0006888;ER to Golgi vesicle-mediated transport;0.000796164798144377!GO:0019902;phosphatase binding;0.000814006745462203!GO:0030118;clathrin coat;0.000820340553114072!GO:0050767;regulation of neurogenesis;0.00082054470073615!GO:0051170;nuclear import;0.000853588786334904!GO:0006470;protein amino acid dephosphorylation;0.000887363874898569!GO:0009892;negative regulation of metabolic process;0.000898150018799946!GO:0005741;mitochondrial outer membrane;0.00101540357794479!GO:0009056;catabolic process;0.00106914133115275!GO:0019904;protein domain specific binding;0.00107568385651818!GO:0022406;membrane docking;0.00113432481272534!GO:0048278;vesicle docking;0.00113432481272534!GO:0003724;RNA helicase activity;0.00123027850655335!GO:0005938;cell cortex;0.0012541651478938!GO:0006607;NLS-bearing substrate import into nucleus;0.00127284705449697!GO:0019888;protein phosphatase regulator activity;0.00134432358204854!GO:0006904;vesicle docking during exocytosis;0.00136665532644419!GO:0031901;early endosome membrane;0.00139618104221972!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00151499574126875!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00151499574126875!GO:0016050;vesicle organization and biogenesis;0.00162684069852012!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00175003710032398!GO:0030532;small nuclear ribonucleoprotein complex;0.00179483570088574!GO:0043566;structure-specific DNA binding;0.00179483570088574!GO:0008654;phospholipid biosynthetic process;0.00180304286311071!GO:0008026;ATP-dependent helicase activity;0.00180914756837771!GO:0016481;negative regulation of transcription;0.00189908823835371!GO:0006752;group transfer coenzyme metabolic process;0.00190862191109024!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00197257938873135!GO:0006650;glycerophospholipid metabolic process;0.00197257938873135!GO:0004722;protein serine/threonine phosphatase activity;0.00197257938873135!GO:0051188;cofactor biosynthetic process;0.00200905814801638!GO:0051087;chaperone binding;0.00205282561804985!GO:0005100;Rho GTPase activator activity;0.0021175061005618!GO:0030867;rough endoplasmic reticulum membrane;0.00213328214362662!GO:0030030;cell projection organization and biogenesis;0.00214435325726507!GO:0048858;cell projection morphogenesis;0.00214435325726507!GO:0032990;cell part morphogenesis;0.00214435325726507!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.00216674876604437!GO:0043209;myelin sheath;0.00216800298168175!GO:0006402;mRNA catabolic process;0.00242000539919759!GO:0031902;late endosome membrane;0.00248056587149283!GO:0030427;site of polarized growth;0.00251903392102491!GO:0003676;nucleic acid binding;0.00255292777274165!GO:0005789;endoplasmic reticulum membrane;0.00268837476084819!GO:0030426;growth cone;0.00271215491473863!GO:0019226;transmission of nerve impulse;0.00277786749033374!GO:0001726;ruffle;0.0028207198137786!GO:0031968;organelle outer membrane;0.0028831330720357!GO:0003713;transcription coactivator activity;0.00295242494238243!GO:0051726;regulation of cell cycle;0.00304741713858364!GO:0000323;lytic vacuole;0.00304741713858364!GO:0005764;lysosome;0.00304741713858364!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00304741713858364!GO:0004812;aminoacyl-tRNA ligase activity;0.00304741713858364!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00304741713858364!GO:0005839;proteasome core complex (sensu Eukaryota);0.00326393779683126!GO:0016740;transferase activity;0.00327092961276833!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0033043267605502!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0033043267605502!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0033043267605502!GO:0048699;generation of neurons;0.0033043267605502!GO:0019867;outer membrane;0.00336208555212805!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0034995464837835!GO:0006887;exocytosis;0.0034995464837835!GO:0004386;helicase activity;0.00363861902756346!GO:0043069;negative regulation of programmed cell death;0.00382340798617112!GO:0005875;microtubule associated complex;0.00389358675982245!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00392431085535177!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00409642779538235!GO:0030041;actin filament polymerization;0.00415101910837759!GO:0008139;nuclear localization sequence binding;0.00417402712969717!GO:0007019;microtubule depolymerization;0.00419401019144913!GO:0003697;single-stranded DNA binding;0.00423917192654454!GO:0008286;insulin receptor signaling pathway;0.00429952129947034!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.00430581394674812!GO:0019198;transmembrane receptor protein phosphatase activity;0.00430581394674812!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00432522523144146!GO:0006916;anti-apoptosis;0.0043899994747954!GO:0000074;regulation of progression through cell cycle;0.0044560245144419!GO:0043066;negative regulation of apoptosis;0.0044572137280197!GO:0005048;signal sequence binding;0.00456653225074423!GO:0015980;energy derivation by oxidation of organic compounds;0.00462485995173413!GO:0005791;rough endoplasmic reticulum;0.00476011803434102!GO:0051276;chromosome organization and biogenesis;0.00483985854264763!GO:0051261;protein depolymerization;0.00489105612140384!GO:0030182;neuron differentiation;0.00491490199610607!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00505558604404086!GO:0022008;neurogenesis;0.00509270560444409!GO:0051028;mRNA transport;0.00509286905711585!GO:0006892;post-Golgi vesicle-mediated transport;0.00513677668161512!GO:0031324;negative regulation of cellular metabolic process;0.00535975547498372!GO:0032011;ARF protein signal transduction;0.00560084544618657!GO:0032012;regulation of ARF protein signal transduction;0.00560084544618657!GO:0005774;vacuolar membrane;0.00560084544618657!GO:0043038;amino acid activation;0.00567242760353732!GO:0006418;tRNA aminoacylation for protein translation;0.00567242760353732!GO:0043039;tRNA aminoacylation;0.00567242760353732!GO:0033673;negative regulation of kinase activity;0.00589021802027643!GO:0006469;negative regulation of protein kinase activity;0.00589021802027643!GO:0008361;regulation of cell size;0.00593768297746681!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00597176143484883!GO:0007049;cell cycle;0.00597176143484883!GO:0007017;microtubule-based process;0.00604065328757856!GO:0043087;regulation of GTPase activity;0.00606717845706539!GO:0006891;intra-Golgi vesicle-mediated transport;0.00610114592413078!GO:0005099;Ras GTPase activator activity;0.00610566728130977!GO:0046467;membrane lipid biosynthetic process;0.00615329967669678!GO:0045892;negative regulation of transcription, DNA-dependent;0.00619916946445841!GO:0006612;protein targeting to membrane;0.00659411069325104!GO:0050839;cell adhesion molecule binding;0.00673193326940271!GO:0006414;translational elongation;0.00692062561502621!GO:0048487;beta-tubulin binding;0.0069779297849442!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00703977979684018!GO:0055083;monovalent inorganic anion homeostasis;0.00703977979684018!GO:0055064;chloride ion homeostasis;0.00703977979684018!GO:0030644;cellular chloride ion homeostasis;0.00703977979684018!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00708602121559214!GO:0009108;coenzyme biosynthetic process;0.00711869509813558!GO:0005885;Arp2/3 protein complex;0.00743041992047465!GO:0042802;identical protein binding;0.00743041992047465!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00743041992047465!GO:0050811;GABA receptor binding;0.00769378543124535!GO:0005516;calmodulin binding;0.00787460903771395!GO:0007272;ensheathment of neurons;0.0079689286169648!GO:0008366;axon ensheathment;0.0079689286169648!GO:0005869;dynactin complex;0.00814948317973683!GO:0005813;centrosome;0.00833087426322059!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0085300952970069!GO:0004667;prostaglandin-D synthase activity;0.0085300952970069!GO:0050802;circadian sleep/wake cycle, sleep;0.0085300952970069!GO:0022410;circadian sleep/wake cycle process;0.0085300952970069!GO:0042749;regulation of circadian sleep/wake cycle;0.0085300952970069!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00862045014169165!GO:0019887;protein kinase regulator activity;0.00862590774512307!GO:0051168;nuclear export;0.00871318589539327!GO:0001505;regulation of neurotransmitter levels;0.00871805325930912!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00891612874237232!GO:0051920;peroxiredoxin activity;0.00960938092534834!GO:0044448;cell cortex part;0.0099061586313457!GO:0001508;regulation of action potential;0.0104189501036076!GO:0012506;vesicle membrane;0.0106422784303812!GO:0065007;biological regulation;0.0109734700050351!GO:0016049;cell growth;0.0111966625971725!GO:0004672;protein kinase activity;0.0112418733958436!GO:0051348;negative regulation of transferase activity;0.0112418733958436!GO:0031114;regulation of microtubule depolymerization;0.0115827243508522!GO:0007026;negative regulation of microtubule depolymerization;0.0115827243508522!GO:0042578;phosphoric ester hydrolase activity;0.0116760126934634!GO:0008186;RNA-dependent ATPase activity;0.0116782612851559!GO:0030424;axon;0.0118202096866717!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0119041319078022!GO:0033043;regulation of organelle organization and biogenesis;0.0119041319078022!GO:0000904;cellular morphogenesis during differentiation;0.0120990681719371!GO:0030384;phosphoinositide metabolic process;0.01212501423919!GO:0051427;hormone receptor binding;0.0123829900623137!GO:0016363;nuclear matrix;0.0124981969452509!GO:0030660;Golgi-associated vesicle membrane;0.0129267923501969!GO:0004298;threonine endopeptidase activity;0.0131780769424865!GO:0048167;regulation of synaptic plasticity;0.0133297486930304!GO:0065009;regulation of a molecular function;0.0134305851792432!GO:0006333;chromatin assembly or disassembly;0.0136138705399379!GO:0006643;membrane lipid metabolic process;0.0137488446021399!GO:0051020;GTPase binding;0.0139788783980844!GO:0000059;protein import into nucleus, docking;0.0140856632609368!GO:0043021;ribonucleoprotein binding;0.0142875935510085!GO:0019903;protein phosphatase binding;0.0142875935510085!GO:0005765;lysosomal membrane;0.0143280873789083!GO:0048666;neuron development;0.0144368526100473!GO:0046488;phosphatidylinositol metabolic process;0.0144368526100473!GO:0048667;neuron morphogenesis during differentiation;0.0145655087350411!GO:0048812;neurite morphogenesis;0.0145655087350411!GO:0030742;GTP-dependent protein binding;0.0150925276712315!GO:0030258;lipid modification;0.0153419374618804!GO:0031175;neurite development;0.0157115223435677!GO:0048500;signal recognition particle;0.0163636959313335!GO:0007243;protein kinase cascade;0.0165786503647298!GO:0004183;carboxypeptidase E activity;0.0168216461063073!GO:0030070;insulin processing;0.0168216461063073!GO:0005092;GDP-dissociation inhibitor activity;0.0168917767473124!GO:0051789;response to protein stimulus;0.0171302631049294!GO:0006986;response to unfolded protein;0.0171302631049294!GO:0030658;transport vesicle membrane;0.0177887147359159!GO:0006468;protein amino acid phosphorylation;0.0179106240596806!GO:0006401;RNA catabolic process;0.0183039259616413!GO:0035035;histone acetyltransferase binding;0.018407931541824!GO:0044437;vacuolar part;0.0185580902807082!GO:0005815;microtubule organizing center;0.0187707189400279!GO:0035257;nuclear hormone receptor binding;0.0198591851356432!GO:0007050;cell cycle arrest;0.0200292922800091!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0201099876807316!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0201099876807316!GO:0015629;actin cytoskeleton;0.0201099876807316!GO:0000062;acyl-CoA binding;0.0202378068951592!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0202902897040268!GO:0019207;kinase regulator activity;0.0203728833230405!GO:0045296;cadherin binding;0.0203728833230405!GO:0030054;cell junction;0.0204017414260004!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0209643422590139!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0220470704065033!GO:0043488;regulation of mRNA stability;0.0222896902587208!GO:0043487;regulation of RNA stability;0.0222896902587208!GO:0003746;translation elongation factor activity;0.0226250858092742!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0227263034301973!GO:0008022;protein C-terminus binding;0.0228406183634322!GO:0030132;clathrin coat of coated pit;0.0228406183634322!GO:0017166;vinculin binding;0.0239168949856512!GO:0044433;cytoplasmic vesicle part;0.0242283610801431!GO:0046930;pore complex;0.0242283610801431!GO:0050803;regulation of synapse structure and activity;0.024368583176551!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0244326223687017!GO:0001666;response to hypoxia;0.0244517345510236!GO:0043086;negative regulation of catalytic activity;0.0246735337916214!GO:0030137;COPI-coated vesicle;0.024891074517465!GO:0030031;cell projection biogenesis;0.0249041501400354!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.024946974234321!GO:0008088;axon cargo transport;0.0251078610102107!GO:0019894;kinesin binding;0.0252205040955141!GO:0065002;intracellular protein transport across a membrane;0.0254404236730884!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0266960295785836!GO:0000118;histone deacetylase complex;0.0268242818039023!GO:0030125;clathrin vesicle coat;0.0274547526879407!GO:0030665;clathrin coated vesicle membrane;0.0274547526879407!GO:0004004;ATP-dependent RNA helicase activity;0.0275874285290231!GO:0042254;ribosome biogenesis and assembly;0.0282442554632438!GO:0016079;synaptic vesicle exocytosis;0.0286824848051974!GO:0042026;protein refolding;0.0289677425424032!GO:0051252;regulation of RNA metabolic process;0.0292307689622611!GO:0005868;cytoplasmic dynein complex;0.0292650530192331!GO:0009117;nucleotide metabolic process;0.0292650530192331!GO:0031371;ubiquitin conjugating enzyme complex;0.0302626553689238!GO:0030119;AP-type membrane coat adaptor complex;0.0303807385347618!GO:0000314;organellar small ribosomal subunit;0.0313326128789251!GO:0005763;mitochondrial small ribosomal subunit;0.0313326128789251!GO:0005667;transcription factor complex;0.0314547995933058!GO:0051540;metal cluster binding;0.0326401115940784!GO:0051536;iron-sulfur cluster binding;0.0326401115940784!GO:0031267;small GTPase binding;0.032707487959071!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0330945039040138!GO:0043681;protein import into mitochondrion;0.0332533209161137!GO:0007034;vacuolar transport;0.0334207570752157!GO:0032535;regulation of cellular component size;0.0337931495113481!GO:0046839;phospholipid dephosphorylation;0.0343609532347085!GO:0016859;cis-trans isomerase activity;0.0347417554520697!GO:0001578;microtubule bundle formation;0.0352643550951904!GO:0042995;cell projection;0.0353391753842214!GO:0030911;TPR domain binding;0.0357158590556751!GO:0004423;iduronate-2-sulfatase activity;0.0357158590556751!GO:0035023;regulation of Rho protein signal transduction;0.0359645657808238!GO:0043403;skeletal muscle regeneration;0.0368525644008759!GO:0006376;mRNA splice site selection;0.0368525644008759!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0368525644008759!GO:0030832;regulation of actin filament length;0.0369734410263755!GO:0006818;hydrogen transport;0.0376587818278321!GO:0000287;magnesium ion binding;0.0382541719841623!GO:0016585;chromatin remodeling complex;0.0384961131140995!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0386356898893325!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0396387306382539!GO:0007268;synaptic transmission;0.0401822538801353!GO:0032318;regulation of Ras GTPase activity;0.0406078011416711!GO:0000209;protein polyubiquitination;0.0407356753975574!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0409202711363896!GO:0050770;regulation of axonogenesis;0.0409841770294187!GO:0019911;structural constituent of myelin sheath;0.0412763488796652!GO:0019783;small conjugating protein-specific protease activity;0.0412763488796652!GO:0030131;clathrin adaptor complex;0.042989608457158!GO:0008250;oligosaccharyl transferase complex;0.0439563717188646!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0439588719990815!GO:0045047;protein targeting to ER;0.0439588719990815!GO:0051287;NAD binding;0.0439588719990815!GO:0016579;protein deubiquitination;0.0443907937178362!GO:0008180;signalosome;0.0443907937178362!GO:0001558;regulation of cell growth;0.0443907937178362!GO:0031124;mRNA 3'-end processing;0.0445876447395418!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0457698038366555!GO:0030641;cellular hydrogen ion homeostasis;0.0457862019247628!GO:0003725;double-stranded RNA binding;0.046501477471761!GO:0004971;alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity;0.0468198211795203!GO:0043407;negative regulation of MAP kinase activity;0.0472827221316901!GO:0004683;calmodulin-dependent protein kinase activity;0.0474386629858168!GO:0051539;4 iron, 4 sulfur cluster binding;0.0474843079796051!GO:0050749;apolipoprotein E receptor binding;0.0474870235599975!GO:0046474;glycerophospholipid biosynthetic process;0.0475700157146499!GO:0007409;axonogenesis;0.0482650732160677!GO:0015992;proton transport;0.048380648029694!GO:0004843;ubiquitin-specific protease activity;0.0488456578861277 | |||
|sample_id=10151 | |sample_id=10151 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 101: | ||
|sample_tissue=amygdala | |sample_tissue=amygdala | ||
|top_motifs=DBP:3.91930354962;REST:3.59768582994;RREB1:3.4848859783;PRRX1,2:3.4572065615;CUX2:3.43677683225;EGR1..3:3.42400897964;MYFfamily:3.38199135299;ZFP161:3.3123794287;OCT4_SOX2{dimer}:3.27390598195;NHLH1,2:3.22019255777;HBP1_HMGB_SSRP1_UBTF:3.18909787216;ATF2:3.17708257018;PRDM1:3.08388675028;AHR_ARNT_ARNT2:3.07230498478;RFX2..5_RFXANK_RFXAP:3.01246590696;HOXA9_MEIS1:3.00464807361;MED-1{core}:3.00368604819;RFX1:2.94652700365;ZBTB6:2.93499329675;GATA4:2.91574888158;MTE{core}:2.91250337947;POU5F1:2.90529140795;MZF1:2.86974146424;PATZ1:2.75262927299;TFAP2B:2.74990230547;SOX2:2.74303569654;GTF2I:2.74291704887;POU6F1:2.51824420666;MTF1:2.47631097599;FOXP1:2.44235234778;NKX6-1,2:2.31598166905;PAX5:2.28786918687;SOX5:2.24976815829;PAX6:2.22282604578;PAX4:2.2084386514;NKX3-2:2.18722931696;MAZ:2.18290449182;IKZF2:2.16495006905;ZNF384:2.14403675941;FOXM1:2.1354809774;HIC1:2.08744038589;BREu{core}:2.06344617205;TGIF1:2.00588710265;NANOG:1.9918037075;FOXD3:1.97155487329;SOX{8,9,10}:1.96997912548;CDC5L:1.91392991619;HOX{A4,D4}:1.90630891038;FOX{F1,F2,J1}:1.85839851837;HMGA1,2:1.75697748536;BPTF:1.74293190859;ARID5B:1.72926765417;KLF4:1.68755683405;SMAD1..7,9:1.68045380847;RBPJ:1.6656886499;LMO2:1.63000056941;GFI1B:1.61766512866;NRF1:1.57330358395;MAFB:1.50944415761;TEF:1.507323359;POU3F1..4:1.45281632609;NFIX:1.45025099191;EP300:1.42889010071;NFIL3:1.39855281873;TLX2:1.39156006099;SP1:1.3660862721;ADNP_IRX_SIX_ZHX:1.31613582969;GCM1,2:1.31408198212;SOX17:1.27491285364;ZBTB16:1.24602045548;POU1F1:1.2385332664;NKX2-3_NKX2-5:1.12900525119;HAND1,2:1.08954995237;GTF2A1,2:1.07086522655;TFDP1:1.07041751885;TOPORS:1.06502292061;FOX{I1,J2}:1.04655875418;ONECUT1,2:1.04053168543;T:1.03986253229;AR:1.02608333174;MYOD1:1.01487216315;FOXP3:0.991043163017;ZNF143:0.972093154107;EBF1:0.947007323223;LEF1_TCF7_TCF7L1,2:0.921716667229;ZIC1..3:0.882019164033;ZNF423:0.827239066693;JUN:0.826896743608;GFI1:0.779619110334;AIRE:0.742492235541;HMX1:0.722267795228;FOXL1:0.683135060717;TFAP2{A,C}:0.660307945551;NR3C1:0.645271329078;SPZ1:0.639789631157;XBP1:0.639067552047;VSX1,2:0.637701743396;TLX1..3_NFIC{dimer}:0.631995934065;CRX:0.619920864927;STAT1,3:0.581866960231;HSF1,2:0.550876969462;SREBF1,2:0.540269930847;MYBL2:0.529967910948;MEF2{A,B,C,D}:0.513805164146;CREB1:0.502462529197;FOX{D1,D2}:0.500998430861;STAT2,4,6:0.458204657593;FOXO1,3,4:0.458163937446;ZEB1:0.422406383371;XCPE1{core}:0.384423360766;FOXQ1:0.375113071455;HOX{A6,A7,B6,B7}:0.352197867918;ALX1:0.326292460053;IRF7:0.291127106548;GZF1:0.233631832337;RORA:0.219872375916;LHX3,4:0.206421823439;ZNF238:0.192304700536;PDX1:0.140484843026;ATF5_CREB3:0.108895164348;UFEwm:0.103853743014;YY1:0.0872498396368;FOXN1:0.069117028427;IKZF1:0.0403042550571;IRF1,2:-0.0337757701907;FOXA2:-0.0474215328467;PITX1..3:-0.0560380017295;PBX1:-0.0856856895679;NFY{A,B,C}:-0.115355409314;CDX1,2,4:-0.131998091327;DMAP1_NCOR{1,2}_SMARC:-0.140442962239;PAX2:-0.193938379809;ESRRA:-0.200207204174;PAX1,9:-0.216229778436;NANOG{mouse}:-0.241974539936;PAX3,7:-0.272451350624;NFATC1..3:-0.284374561861;ATF4:-0.353033513434;SPI1:-0.388961262054;NFE2L2:-0.406451872769;SNAI1..3:-0.493164555755;CEBPA,B_DDIT3:-0.523047013299;SPIB:-0.548085519441;NKX3-1:-0.565065336283;NKX2-2,8:-0.567013104078;bHLH_family:-0.634744631823;TBX4,5:-0.657489355947;NFE2:-0.684736891574;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.709672622843;TFCP2:-0.750068319899;GATA6:-0.798988472032;ETS1,2:-0.805124433278;HIF1A:-0.840483926703;TFAP4:-0.848647546988;EVI1:-0.945732860756;TP53:-0.952532396772;ATF6:-0.976542306667;TEAD1:-1.00999330559;HNF1A:-1.01518822787;TAL1_TCF{3,4,12}:-1.0181653304;ZNF148:-1.03142791431;HNF4A_NR2F1,2:-1.06611552303;BACH2:-1.07292131193;RUNX1..3:-1.12687303552;GLI1..3:-1.13752499946;FOSL2:-1.18662887974;FOS_FOS{B,L1}_JUN{B,D}:-1.18913685252;PAX8:-1.22622664872;NFKB1_REL_RELA:-1.3162356343;ELK1,4_GABP{A,B1}:-1.33224148911;E2F1..5:-1.35383203332;TBP:-1.38552064382;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.39379824296;NR5A1,2:-1.40929713875;NFE2L1:-1.41553753769;ELF1,2,4:-1.50248565982;HLF:-1.5393525299;ALX4:-1.53973494081;NR1H4:-1.5671765415;POU2F1..3:-1.59462549411;MYB:-1.62872516719;RXR{A,B,G}:-1.66121337543;ESR1:-1.67051180683;SRF:-1.82964430961;NKX2-1,4:-1.84321943459;RXRA_VDR{dimer}:-1.86283600022;STAT5{A,B}:-2.29224773378;HOX{A5,B5}:-2.50440769862;NR6A1:-2.50540453055;HES1:-2.66257486743;PPARG:-2.82769170361;EN1,2:-3.04991463947 | |top_motifs=DBP:3.91930354962;REST:3.59768582994;RREB1:3.4848859783;PRRX1,2:3.4572065615;CUX2:3.43677683225;EGR1..3:3.42400897964;MYFfamily:3.38199135299;ZFP161:3.3123794287;OCT4_SOX2{dimer}:3.27390598195;NHLH1,2:3.22019255777;HBP1_HMGB_SSRP1_UBTF:3.18909787216;ATF2:3.17708257018;PRDM1:3.08388675028;AHR_ARNT_ARNT2:3.07230498478;RFX2..5_RFXANK_RFXAP:3.01246590696;HOXA9_MEIS1:3.00464807361;MED-1{core}:3.00368604819;RFX1:2.94652700365;ZBTB6:2.93499329675;GATA4:2.91574888158;MTE{core}:2.91250337947;POU5F1:2.90529140795;MZF1:2.86974146424;PATZ1:2.75262927299;TFAP2B:2.74990230547;SOX2:2.74303569654;GTF2I:2.74291704887;POU6F1:2.51824420666;MTF1:2.47631097599;FOXP1:2.44235234778;NKX6-1,2:2.31598166905;PAX5:2.28786918687;SOX5:2.24976815829;PAX6:2.22282604578;PAX4:2.2084386514;NKX3-2:2.18722931696;MAZ:2.18290449182;IKZF2:2.16495006905;ZNF384:2.14403675941;FOXM1:2.1354809774;HIC1:2.08744038589;BREu{core}:2.06344617205;TGIF1:2.00588710265;NANOG:1.9918037075;FOXD3:1.97155487329;SOX{8,9,10}:1.96997912548;CDC5L:1.91392991619;HOX{A4,D4}:1.90630891038;FOX{F1,F2,J1}:1.85839851837;HMGA1,2:1.75697748536;BPTF:1.74293190859;ARID5B:1.72926765417;KLF4:1.68755683405;SMAD1..7,9:1.68045380847;RBPJ:1.6656886499;LMO2:1.63000056941;GFI1B:1.61766512866;NRF1:1.57330358395;MAFB:1.50944415761;TEF:1.507323359;POU3F1..4:1.45281632609;NFIX:1.45025099191;EP300:1.42889010071;NFIL3:1.39855281873;TLX2:1.39156006099;SP1:1.3660862721;ADNP_IRX_SIX_ZHX:1.31613582969;GCM1,2:1.31408198212;SOX17:1.27491285364;ZBTB16:1.24602045548;POU1F1:1.2385332664;NKX2-3_NKX2-5:1.12900525119;HAND1,2:1.08954995237;GTF2A1,2:1.07086522655;TFDP1:1.07041751885;TOPORS:1.06502292061;FOX{I1,J2}:1.04655875418;ONECUT1,2:1.04053168543;T:1.03986253229;AR:1.02608333174;MYOD1:1.01487216315;FOXP3:0.991043163017;ZNF143:0.972093154107;EBF1:0.947007323223;LEF1_TCF7_TCF7L1,2:0.921716667229;ZIC1..3:0.882019164033;ZNF423:0.827239066693;JUN:0.826896743608;GFI1:0.779619110334;AIRE:0.742492235541;HMX1:0.722267795228;FOXL1:0.683135060717;TFAP2{A,C}:0.660307945551;NR3C1:0.645271329078;SPZ1:0.639789631157;XBP1:0.639067552047;VSX1,2:0.637701743396;TLX1..3_NFIC{dimer}:0.631995934065;CRX:0.619920864927;STAT1,3:0.581866960231;HSF1,2:0.550876969462;SREBF1,2:0.540269930847;MYBL2:0.529967910948;MEF2{A,B,C,D}:0.513805164146;CREB1:0.502462529197;FOX{D1,D2}:0.500998430861;STAT2,4,6:0.458204657593;FOXO1,3,4:0.458163937446;ZEB1:0.422406383371;XCPE1{core}:0.384423360766;FOXQ1:0.375113071455;HOX{A6,A7,B6,B7}:0.352197867918;ALX1:0.326292460053;IRF7:0.291127106548;GZF1:0.233631832337;RORA:0.219872375916;LHX3,4:0.206421823439;ZNF238:0.192304700536;PDX1:0.140484843026;ATF5_CREB3:0.108895164348;UFEwm:0.103853743014;YY1:0.0872498396368;FOXN1:0.069117028427;IKZF1:0.0403042550571;IRF1,2:-0.0337757701907;FOXA2:-0.0474215328467;PITX1..3:-0.0560380017295;PBX1:-0.0856856895679;NFY{A,B,C}:-0.115355409314;CDX1,2,4:-0.131998091327;DMAP1_NCOR{1,2}_SMARC:-0.140442962239;PAX2:-0.193938379809;ESRRA:-0.200207204174;PAX1,9:-0.216229778436;NANOG{mouse}:-0.241974539936;PAX3,7:-0.272451350624;NFATC1..3:-0.284374561861;ATF4:-0.353033513434;SPI1:-0.388961262054;NFE2L2:-0.406451872769;SNAI1..3:-0.493164555755;CEBPA,B_DDIT3:-0.523047013299;SPIB:-0.548085519441;NKX3-1:-0.565065336283;NKX2-2,8:-0.567013104078;bHLH_family:-0.634744631823;TBX4,5:-0.657489355947;NFE2:-0.684736891574;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.709672622843;TFCP2:-0.750068319899;GATA6:-0.798988472032;ETS1,2:-0.805124433278;HIF1A:-0.840483926703;TFAP4:-0.848647546988;EVI1:-0.945732860756;TP53:-0.952532396772;ATF6:-0.976542306667;TEAD1:-1.00999330559;HNF1A:-1.01518822787;TAL1_TCF{3,4,12}:-1.0181653304;ZNF148:-1.03142791431;HNF4A_NR2F1,2:-1.06611552303;BACH2:-1.07292131193;RUNX1..3:-1.12687303552;GLI1..3:-1.13752499946;FOSL2:-1.18662887974;FOS_FOS{B,L1}_JUN{B,D}:-1.18913685252;PAX8:-1.22622664872;NFKB1_REL_RELA:-1.3162356343;ELK1,4_GABP{A,B1}:-1.33224148911;E2F1..5:-1.35383203332;TBP:-1.38552064382;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.39379824296;NR5A1,2:-1.40929713875;NFE2L1:-1.41553753769;ELF1,2,4:-1.50248565982;HLF:-1.5393525299;ALX4:-1.53973494081;NR1H4:-1.5671765415;POU2F1..3:-1.59462549411;MYB:-1.62872516719;RXR{A,B,G}:-1.66121337543;ESR1:-1.67051180683;SRF:-1.82964430961;NKX2-1,4:-1.84321943459;RXRA_VDR{dimer}:-1.86283600022;STAT5{A,B}:-2.29224773378;HOX{A5,B5}:-2.50440769862;NR6A1:-2.50540453055;HES1:-2.66257486743;PPARG:-2.82769170361;EN1,2:-3.04991463947 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10151-102I7;search_select_hide=table117:FF:10151-102I7 | |||
}} | }} | ||
Latest revision as of 12:22, 3 June 2020
| Name: | amygdala, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12311 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12311
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12311
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.048 |
| 10 | 10 | 0.049 |
| 100 | 100 | 0.374 |
| 101 | 101 | 0.378 |
| 102 | 102 | 0.9 |
| 103 | 103 | 0.0703 |
| 104 | 104 | 0.151 |
| 105 | 105 | 0.207 |
| 106 | 106 | 0.0436 |
| 107 | 107 | 0.111 |
| 108 | 108 | 0.993 |
| 109 | 109 | 0.00174 |
| 11 | 11 | 0.013 |
| 110 | 110 | 0.0577 |
| 111 | 111 | 0.16 |
| 112 | 112 | 0.275 |
| 113 | 113 | 0.571 |
| 114 | 114 | 0.106 |
| 115 | 115 | 0.966 |
| 116 | 116 | 0.205 |
| 117 | 117 | 0.0122 |
| 118 | 118 | 0.147 |
| 119 | 119 | 0.164 |
| 12 | 12 | 0.633 |
| 120 | 120 | 0.204 |
| 121 | 121 | 0.194 |
| 122 | 122 | 0.834 |
| 123 | 123 | 0.747 |
| 124 | 124 | 0.334 |
| 125 | 125 | 0.242 |
| 126 | 126 | 0.0335 |
| 127 | 127 | 0.435 |
| 128 | 128 | 0.187 |
| 129 | 129 | 0.386 |
| 13 | 13 | 0.00218 |
| 130 | 130 | 0.307 |
| 131 | 131 | 0.0492 |
| 132 | 132 | 0.648 |
| 133 | 133 | 0.0678 |
| 134 | 134 | 0.407 |
| 135 | 135 | 0.325 |
| 136 | 136 | 0.00345 |
| 137 | 137 | 0.774 |
| 138 | 138 | 0.908 |
| 139 | 139 | 0.101 |
| 14 | 14 | 0.925 |
| 140 | 140 | 0.837 |
| 141 | 141 | 0.437 |
| 142 | 142 | 0.794 |
| 143 | 143 | 0.0375 |
| 144 | 144 | 0.898 |
| 145 | 145 | 0.172 |
| 146 | 146 | 0.495 |
| 147 | 147 | 0.94 |
| 148 | 148 | 0.23 |
| 149 | 149 | 0.201 |
| 15 | 15 | 0.0707 |
| 150 | 150 | 0.16 |
| 151 | 151 | 0.577 |
| 152 | 152 | 0.0874 |
| 153 | 153 | 0.99 |
| 154 | 154 | 0.489 |
| 155 | 155 | 0.582 |
| 156 | 156 | 0.313 |
| 157 | 157 | 0.459 |
| 158 | 158 | 0.513 |
| 159 | 159 | 0.0389 |
| 16 | 16 | 0.0496 |
| 160 | 160 | 0.223 |
| 161 | 161 | 0.159 |
| 162 | 162 | 0.793 |
| 163 | 163 | 0.796 |
| 164 | 164 | 0.0425 |
| 165 | 165 | 0.035 |
| 166 | 166 | 0.81 |
| 167 | 167 | 0.663 |
| 168 | 168 | 0.398 |
| 169 | 169 | 0.00987 |
| 17 | 17 | 0.125 |
| 18 | 18 | 0.112 |
| 19 | 19 | 0.201 |
| 2 | 2 | 0.8 |
| 20 | 20 | 0.202 |
| 21 | 21 | 0.0781 |
| 22 | 22 | 0.202 |
| 23 | 23 | 0.351 |
| 24 | 24 | 0.0392 |
| 25 | 25 | 0.49 |
| 26 | 26 | 7.77333e-4 |
| 27 | 27 | 0.673 |
| 28 | 28 | 0.684 |
| 29 | 29 | 0.00827 |
| 3 | 3 | 0.0482 |
| 30 | 30 | 0.936 |
| 31 | 31 | 0.806 |
| 32 | 32 | 0.0348 |
| 33 | 33 | 0.0517 |
| 34 | 34 | 0.654 |
| 35 | 35 | 0.58 |
| 36 | 36 | 0.131 |
| 37 | 37 | 0.0339 |
| 38 | 38 | 0.302 |
| 39 | 39 | 0.273 |
| 4 | 4 | 0.636 |
| 40 | 40 | 0.0252 |
| 41 | 41 | 0.263 |
| 42 | 42 | 0.215 |
| 43 | 43 | 0.119 |
| 44 | 44 | 0.155 |
| 45 | 45 | 0.651 |
| 46 | 46 | 0.078 |
| 47 | 47 | 0.0549 |
| 48 | 48 | 0.0462 |
| 49 | 49 | 0.201 |
| 5 | 5 | 0.483 |
| 50 | 50 | 0.371 |
| 51 | 51 | 0.384 |
| 52 | 52 | 0.511 |
| 53 | 53 | 0.803 |
| 54 | 54 | 0.386 |
| 55 | 55 | 0.566 |
| 56 | 56 | 0.468 |
| 57 | 57 | 0.374 |
| 58 | 58 | 0.283 |
| 59 | 59 | 0.0668 |
| 6 | 6 | 0.957 |
| 60 | 60 | 0.0653 |
| 61 | 61 | 0.0906 |
| 62 | 62 | 0.168 |
| 63 | 63 | 0.2 |
| 64 | 64 | 0.187 |
| 65 | 65 | 0.227 |
| 66 | 66 | 0.127 |
| 67 | 67 | 0.276 |
| 68 | 68 | 0.127 |
| 69 | 69 | 0.479 |
| 7 | 7 | 0.0527 |
| 70 | 70 | 0.0463 |
| 71 | 71 | 0.0101 |
| 72 | 72 | 0.347 |
| 73 | 73 | 0.0295 |
| 74 | 74 | 0.685 |
| 75 | 75 | 0.0315 |
| 76 | 76 | 0.42 |
| 77 | 77 | 0.166 |
| 78 | 78 | 0.00163 |
| 79 | 79 | 0.26 |
| 8 | 8 | 0.0762 |
| 80 | 80 | 0.383 |
| 81 | 81 | 0.638 |
| 82 | 82 | 0.588 |
| 83 | 83 | 0.0321 |
| 84 | 84 | 0.68 |
| 85 | 85 | 0.256 |
| 86 | 86 | 0.2 |
| 87 | 87 | 2.35461e-4 |
| 88 | 88 | 0.825 |
| 89 | 89 | 0.361 |
| 9 | 9 | 0.362 |
| 90 | 90 | 0.0733 |
| 91 | 91 | 0.698 |
| 92 | 92 | 0.583 |
| 93 | 93 | 0.883 |
| 94 | 94 | 0.192 |
| 95 | 95 | 0.0105 |
| 96 | 96 | 0.972 |
| 97 | 97 | 0.757 |
| 98 | 98 | 0.257 |
| 99 | 99 | 0.475 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12311
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010151 human amygdala - adult donor sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001871 (temporal lobe)
0001876 (amygdala)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)
0000349 (limbic system)
0010011 (collection of basal ganglia)
0000454 (cerebral subcortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010151 (human amygdala - adult donor sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
