FF:10176-103C5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005287 | ||
|accession_numbers=CAGE;DRX008714;DRR009586;DRZ001011;DRZ002396;DRZ012361;DRZ013746 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001874,UBERON:0000369,UBERON:0002435,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0000125,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0005383,UBERON:0010011,UBERON:0000204,UBERON:0005382,UBERON:0000454 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010087 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/putamen%252c%2520adult%252c%2520donor10196.CNhs12324.10176-103C5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/putamen%252c%2520adult%252c%2520donor10196.CNhs12324.10176-103C5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/putamen%252c%2520adult%252c%2520donor10196.CNhs12324.10176-103C5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/putamen%252c%2520adult%252c%2520donor10196.CNhs12324.10176-103C5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/putamen%252c%2520adult%252c%2520donor10196.CNhs12324.10176-103C5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10176-103C5 | |id=FF:10176-103C5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010087 | ||
|is_obsolete= | |||
|library_id=CNhs12324 | |||
|library_id_phase_based=2:CNhs12324 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10176 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10176 | |||
|name=putamen, adult, donor10196 | |name=putamen, adult, donor10196 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12324,LSID913,release011,COMPLETED | |profile_hcage=CNhs12324,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=41.274 | |rna_weight_ug=41.274 | ||
|sample_age=60 | |sample_age=60 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.16848991943738e-269!GO:0005737;cytoplasm;2.68558737328858e-155!GO:0043226;organelle;1.48541352843029e-106!GO:0043229;intracellular organelle;4.9443040149375e-106!GO:0044444;cytoplasmic part;4.56288401080128e-104!GO:0043227;membrane-bound organelle;1.85628921216829e-100!GO:0043231;intracellular membrane-bound organelle;3.22140554062796e-100!GO:0044422;organelle part;2.81614410064999e-70!GO:0044446;intracellular organelle part;3.14069188243608e-69!GO:0032991;macromolecular complex;6.21297264258485e-65!GO:0005515;protein binding;2.55350761465647e-63!GO:0016043;cellular component organization and biogenesis;5.25158386467425e-47!GO:0005739;mitochondrion;5.29876933717453e-47!GO:0030529;ribonucleoprotein complex;7.69840481665744e-47!GO:0003723;RNA binding;6.50419619937456e-43!GO:0031090;organelle membrane;1.42186470173196e-37!GO:0033036;macromolecule localization;3.72309056336231e-37!GO:0015031;protein transport;8.71408801679368e-37!GO:0043234;protein complex;4.47809792129616e-35!GO:0044429;mitochondrial part;8.34077447044285e-35!GO:0043233;organelle lumen;4.39390066557411e-34!GO:0031974;membrane-enclosed lumen;4.39390066557411e-34!GO:0008104;protein localization;1.30867564791877e-33!GO:0045184;establishment of protein localization;2.49606592174409e-33!GO:0044428;nuclear part;4.70677274418766e-32!GO:0046907;intracellular transport;3.43745090368116e-31!GO:0044238;primary metabolic process;2.22113753253224e-29!GO:0044237;cellular metabolic process;2.41020814738831e-28!GO:0051649;establishment of cellular localization;5.05255050341122e-28!GO:0031975;envelope;6.2528772663595e-28!GO:0031967;organelle envelope;8.95192320152142e-28!GO:0051641;cellular localization;1.36728919721054e-27!GO:0043170;macromolecule metabolic process;4.01957999887488e-27!GO:0016071;mRNA metabolic process;4.09085672433203e-27!GO:0006396;RNA processing;1.02018810891807e-26!GO:0005840;ribosome;1.54030694993135e-26!GO:0005829;cytosol;1.65897915931246e-26!GO:0005634;nucleus;1.45189057097195e-25!GO:0008380;RNA splicing;5.72827081109613e-25!GO:0019538;protein metabolic process;6.19591525006347e-25!GO:0016192;vesicle-mediated transport;1.44894550543559e-24!GO:0005740;mitochondrial envelope;7.61066203111767e-24!GO:0031966;mitochondrial membrane;1.41718446279883e-23!GO:0006119;oxidative phosphorylation;6.04586741428527e-23!GO:0006886;intracellular protein transport;4.11858635998525e-22!GO:0044260;cellular macromolecule metabolic process;5.85618910720715e-22!GO:0006397;mRNA processing;5.94132063849437e-22!GO:0003735;structural constituent of ribosome;1.0646750395479e-21!GO:0044267;cellular protein metabolic process;2.45258761511829e-21!GO:0019866;organelle inner membrane;4.84429382560486e-21!GO:0006412;translation;8.72145160437939e-21!GO:0005743;mitochondrial inner membrane;1.35771200112772e-20!GO:0006996;organelle organization and biogenesis;3.06460096014093e-20!GO:0005794;Golgi apparatus;2.11618795866344e-19!GO:0031981;nuclear lumen;2.27789940442041e-19!GO:0044455;mitochondrial membrane part;1.63401497743063e-18!GO:0000166;nucleotide binding;5.09482464567063e-18!GO:0033279;ribosomal subunit;5.09482464567063e-18!GO:0065003;macromolecular complex assembly;9.6528534493602e-18!GO:0005681;spliceosome;2.45430422303365e-17!GO:0005746;mitochondrial respiratory chain;1.37837801997456e-16!GO:0006512;ubiquitin cycle;2.09746000933165e-16!GO:0009058;biosynthetic process;3.28316530507852e-16!GO:0043283;biopolymer metabolic process;3.46544616365897e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.77605599883048e-16!GO:0044249;cellular biosynthetic process;8.5488056250455e-16!GO:0050136;NADH dehydrogenase (quinone) activity;9.53715242251728e-16!GO:0003954;NADH dehydrogenase activity;9.53715242251728e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.53715242251728e-16!GO:0022607;cellular component assembly;1.5943886542674e-15!GO:0031982;vesicle;1.93576943081678e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.31188632314277e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;2.61740011337437e-15!GO:0016462;pyrophosphatase activity;3.17558182979006e-15!GO:0031988;membrane-bound vesicle;7.9723309788144e-15!GO:0031410;cytoplasmic vesicle;9.8131303105535e-15!GO:0017111;nucleoside-triphosphatase activity;2.3022547686427e-14!GO:0016023;cytoplasmic membrane-bound vesicle;4.85611463734555e-14!GO:0006457;protein folding;8.54864853275323e-14!GO:0030964;NADH dehydrogenase complex (quinone);9.34028376712205e-14!GO:0045271;respiratory chain complex I;9.34028376712205e-14!GO:0005747;mitochondrial respiratory chain complex I;9.34028376712205e-14!GO:0031980;mitochondrial lumen;1.07965203146385e-13!GO:0005759;mitochondrial matrix;1.07965203146385e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.69558173176312e-13!GO:0042773;ATP synthesis coupled electron transport;1.69558173176312e-13!GO:0009059;macromolecule biosynthetic process;1.72058614020772e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.9973463802516e-13!GO:0044445;cytosolic part;3.7967664602228e-13!GO:0032553;ribonucleotide binding;3.97095906049423e-13!GO:0032555;purine ribonucleotide binding;3.97095906049423e-13!GO:0016874;ligase activity;4.22282877820405e-13!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.23661521099024e-13!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.2404631751565e-13!GO:0043687;post-translational protein modification;5.74088527516322e-13!GO:0043412;biopolymer modification;7.18419907206396e-13!GO:0010467;gene expression;8.37459041333005e-13!GO:0012505;endomembrane system;9.15966971572675e-13!GO:0045045;secretory pathway;1.18776788436529e-12!GO:0017076;purine nucleotide binding;1.73145031234623e-12!GO:0005654;nucleoplasm;1.85300584466889e-12!GO:0006464;protein modification process;5.57491215224205e-12!GO:0048193;Golgi vesicle transport;9.63334315889288e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;2.73820437226344e-11!GO:0006511;ubiquitin-dependent protein catabolic process;3.02932502563907e-11!GO:0007264;small GTPase mediated signal transduction;3.07311990615169e-11!GO:0044451;nucleoplasm part;4.34181935621517e-11!GO:0019941;modification-dependent protein catabolic process;4.39100493100992e-11!GO:0043632;modification-dependent macromolecule catabolic process;4.39100493100992e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.88371828077188e-11!GO:0044257;cellular protein catabolic process;6.83480040694609e-11!GO:0019829;cation-transporting ATPase activity;6.84521564025749e-11!GO:0051082;unfolded protein binding;7.95283711231565e-11!GO:0022618;protein-RNA complex assembly;9.58855952387134e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.63339907249327e-11!GO:0006605;protein targeting;9.97160569378268e-11!GO:0043228;non-membrane-bound organelle;1.05198269775945e-10!GO:0043232;intracellular non-membrane-bound organelle;1.05198269775945e-10!GO:0048770;pigment granule;1.56383335681009e-10!GO:0042470;melanosome;1.56383335681009e-10!GO:0003924;GTPase activity;2.14527371359126e-10!GO:0044265;cellular macromolecule catabolic process;2.647277728688e-10!GO:0015935;small ribosomal subunit;4.79231291720301e-10!GO:0000502;proteasome complex (sensu Eukaryota);6.3158948561057e-10!GO:0008135;translation factor activity, nucleic acid binding;6.93336549990556e-10!GO:0006793;phosphorus metabolic process;1.07397744828606e-09!GO:0006796;phosphate metabolic process;1.07397744828606e-09!GO:0030695;GTPase regulator activity;1.6835012995396e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.88692038151122e-09!GO:0043285;biopolymer catabolic process;2.1726828905204e-09!GO:0030135;coated vesicle;2.83951527225476e-09!GO:0044248;cellular catabolic process;5.20642745797679e-09!GO:0005768;endosome;5.96940592550638e-09!GO:0015934;large ribosomal subunit;7.38230551101084e-09!GO:0008565;protein transporter activity;7.66180938030434e-09!GO:0051186;cofactor metabolic process;7.66180938030434e-09!GO:0008134;transcription factor binding;1.00402211484041e-08!GO:0030163;protein catabolic process;1.11812087756903e-08!GO:0016044;membrane organization and biogenesis;1.11812087756903e-08!GO:0015986;ATP synthesis coupled proton transport;1.20707078335002e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.20707078335002e-08!GO:0008639;small protein conjugating enzyme activity;1.41203557298941e-08!GO:0044431;Golgi apparatus part;1.41203557298941e-08!GO:0005525;GTP binding;1.93386836770072e-08!GO:0004842;ubiquitin-protein ligase activity;1.99730561423689e-08!GO:0032940;secretion by cell;3.44048121576885e-08!GO:0006810;transport;3.7616366980404e-08!GO:0019787;small conjugating protein ligase activity;3.86723555188459e-08!GO:0016604;nuclear body;4.03722830583003e-08!GO:0005083;small GTPase regulator activity;5.06170288955556e-08!GO:0009060;aerobic respiration;5.53156945723876e-08!GO:0007399;nervous system development;6.54589775214605e-08!GO:0016607;nuclear speck;7.06790827793901e-08!GO:0005761;mitochondrial ribosome;7.24746080341e-08!GO:0000313;organellar ribosome;7.24746080341e-08!GO:0009057;macromolecule catabolic process;7.56866074738052e-08!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.57719648629029e-08!GO:0043005;neuron projection;8.22577365019218e-08!GO:0045333;cellular respiration;1.10256736464767e-07!GO:0016310;phosphorylation;1.11422239897401e-07!GO:0006461;protein complex assembly;1.13295003380376e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;1.27386440594519e-07!GO:0000375;RNA splicing, via transesterification reactions;1.27386440594519e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.27386440594519e-07!GO:0032559;adenyl ribonucleotide binding;1.43242642484262e-07!GO:0005783;endoplasmic reticulum;1.77540582300132e-07!GO:0007010;cytoskeleton organization and biogenesis;1.96325921366422e-07!GO:0006446;regulation of translational initiation;2.10864768536818e-07!GO:0008092;cytoskeletal protein binding;2.42473249438935e-07!GO:0032561;guanyl ribonucleotide binding;3.04191482436269e-07!GO:0019001;guanyl nucleotide binding;3.04191482436269e-07!GO:0009141;nucleoside triphosphate metabolic process;3.04191482436269e-07!GO:0046034;ATP metabolic process;3.84668447934548e-07!GO:0006913;nucleocytoplasmic transport;4.02328311813013e-07!GO:0015078;hydrogen ion transmembrane transporter activity;4.24227394776323e-07!GO:0003743;translation initiation factor activity;4.27612737102065e-07!GO:0006754;ATP biosynthetic process;4.27612737102065e-07!GO:0006753;nucleoside phosphate metabolic process;4.27612737102065e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.3167398832871e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.06440710017471e-07!GO:0009144;purine nucleoside triphosphate metabolic process;5.06440710017471e-07!GO:0005524;ATP binding;5.19589739249634e-07!GO:0030554;adenyl nucleotide binding;5.23556213290792e-07!GO:0051169;nuclear transport;5.67858558207826e-07!GO:0009199;ribonucleoside triphosphate metabolic process;5.87663648701587e-07!GO:0006164;purine nucleotide biosynthetic process;5.97340442390445e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.0572471936698e-07!GO:0005730;nucleolus;6.07698914992791e-07!GO:0006163;purine nucleotide metabolic process;6.16810884422901e-07!GO:0016881;acid-amino acid ligase activity;6.97660755649997e-07!GO:0006413;translational initiation;7.25412981933492e-07!GO:0009055;electron carrier activity;7.45102320667205e-07!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.71610683455682e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.39253211337677e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.39253211337677e-07!GO:0006732;coenzyme metabolic process;8.52571833859356e-07!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.74742648037465e-07!GO:0048471;perinuclear region of cytoplasm;9.25959007234849e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.00822550904196e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.00822550904196e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.07722507825711e-06!GO:0015631;tubulin binding;1.09990833183533e-06!GO:0015630;microtubule cytoskeleton;1.1033846949642e-06!GO:0009150;purine ribonucleotide metabolic process;1.16350776704973e-06!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.18193377149414e-06!GO:0030036;actin cytoskeleton organization and biogenesis;1.58038334452905e-06!GO:0009259;ribonucleotide metabolic process;1.61915682395687e-06!GO:0044440;endosomal part;1.90379257316405e-06!GO:0010008;endosome membrane;1.90379257316405e-06!GO:0000139;Golgi membrane;2.22806147939666e-06!GO:0051179;localization;2.30925920856897e-06!GO:0031965;nuclear membrane;2.66446050761728e-06!GO:0030425;dendrite;2.72132500426847e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.80374275129818e-06!GO:0007242;intracellular signaling cascade;2.84197734288109e-06!GO:0009260;ribonucleotide biosynthetic process;2.9501479914233e-06!GO:0051234;establishment of localization;3.34831990144326e-06!GO:0045259;proton-transporting ATP synthase complex;3.66091360681047e-06!GO:0006099;tricarboxylic acid cycle;3.71476186346683e-06!GO:0046356;acetyl-CoA catabolic process;3.71476186346683e-06!GO:0030136;clathrin-coated vesicle;4.30025801621888e-06!GO:0048475;coated membrane;4.4027659764141e-06!GO:0030117;membrane coat;4.4027659764141e-06!GO:0009109;coenzyme catabolic process;6.77021864420764e-06!GO:0048523;negative regulation of cellular process;6.93281856698111e-06!GO:0008287;protein serine/threonine phosphatase complex;8.2499198056327e-06!GO:0017038;protein import;8.759273849593e-06!GO:0042623;ATPase activity, coupled;9.1666600874624e-06!GO:0019717;synaptosome;9.44215813918321e-06!GO:0019899;enzyme binding;1.03050436148305e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.03430168449183e-05!GO:0019226;transmission of nerve impulse;1.07762991959807e-05!GO:0032446;protein modification by small protein conjugation;1.15989683473435e-05!GO:0016887;ATPase activity;1.27362251595991e-05!GO:0006084;acetyl-CoA metabolic process;1.35246387503786e-05!GO:0005635;nuclear envelope;1.50453564794404e-05!GO:0016567;protein ubiquitination;1.73902201639198e-05!GO:0051187;cofactor catabolic process;1.97758254796184e-05!GO:0030029;actin filament-based process;2.21453081628093e-05!GO:0006897;endocytosis;2.2293812573975e-05!GO:0010324;membrane invagination;2.2293812573975e-05!GO:0005769;early endosome;2.4382029305978e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;2.55110911914938e-05!GO:0005905;coated pit;4.34325728340015e-05!GO:0005770;late endosome;4.54404949320247e-05!GO:0044432;endoplasmic reticulum part;5.76196587050215e-05!GO:0006259;DNA metabolic process;5.81586226579375e-05!GO:0045786;negative regulation of progression through cell cycle;6.04251690794729e-05!GO:0003712;transcription cofactor activity;6.04251690794729e-05!GO:0031252;leading edge;6.04251690794729e-05!GO:0016070;RNA metabolic process;6.40680045742356e-05!GO:0005874;microtubule;7.75920113301902e-05!GO:0005798;Golgi-associated vesicle;8.65967043280561e-05!GO:0009056;catabolic process;8.67728825313803e-05!GO:0048519;negative regulation of biological process;9.2028649635308e-05!GO:0006323;DNA packaging;9.97380528641854e-05!GO:0022890;inorganic cation transmembrane transporter activity;0.000103401897866524!GO:0000245;spliceosome assembly;0.000103627134273386!GO:0006403;RNA localization;0.000103627134273386!GO:0050657;nucleic acid transport;0.000103627134273386!GO:0051236;establishment of RNA localization;0.000103627134273386!GO:0050658;RNA transport;0.000103627134273386!GO:0006888;ER to Golgi vesicle-mediated transport;0.000114425929720667!GO:0008017;microtubule binding;0.000117789483736641!GO:0000159;protein phosphatase type 2A complex;0.000122211017679453!GO:0000151;ubiquitin ligase complex;0.000122341329764739!GO:0008047;enzyme activator activity;0.000127896842985486!GO:0051246;regulation of protein metabolic process;0.00013092856800544!GO:0005096;GTPase activator activity;0.000133293279045841!GO:0007265;Ras protein signal transduction;0.000133293279045841!GO:0051056;regulation of small GTPase mediated signal transduction;0.00013651334625037!GO:0051188;cofactor biosynthetic process;0.00013956110188259!GO:0030120;vesicle coat;0.000140067210974847!GO:0030662;coated vesicle membrane;0.000140067210974847!GO:0006752;group transfer coenzyme metabolic process;0.000169592804710896!GO:0051128;regulation of cellular component organization and biogenesis;0.000170333639363325!GO:0008654;phospholipid biosynthetic process;0.000179158653009699!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.000223561991735337!GO:0007268;synaptic transmission;0.000230203148207613!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000231042108885314!GO:0005643;nuclear pore;0.000239038650234847!GO:0005741;mitochondrial outer membrane;0.000256229589556622!GO:0016568;chromatin modification;0.000262514656552485!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000262514656552485!GO:0015399;primary active transmembrane transporter activity;0.000262514656552485!GO:0019208;phosphatase regulator activity;0.000265656295326315!GO:0005789;endoplasmic reticulum membrane;0.000292734238259338!GO:0044453;nuclear membrane part;0.000302129604317866!GO:0006613;cotranslational protein targeting to membrane;0.000303369674389069!GO:0048489;synaptic vesicle transport;0.000303986583741531!GO:0008601;protein phosphatase type 2A regulator activity;0.000309666770217824!GO:0016301;kinase activity;0.000313699465026641!GO:0003724;RNA helicase activity;0.000318144077588531!GO:0043566;structure-specific DNA binding;0.000318825306085587!GO:0003697;single-stranded DNA binding;0.000324934072384777!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000331889699567164!GO:0000902;cell morphogenesis;0.000337629411499489!GO:0032989;cellular structure morphogenesis;0.000337629411499489!GO:0016564;transcription repressor activity;0.000343549921079167!GO:0007269;neurotransmitter secretion;0.00036522055186241!GO:0005793;ER-Golgi intermediate compartment;0.00038600322232546!GO:0003676;nucleic acid binding;0.00038600322232546!GO:0001505;regulation of neurotransmitter levels;0.00040969233186247!GO:0030027;lamellipodium;0.000417676753247409!GO:0031072;heat shock protein binding;0.000455949637781908!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000478770309928455!GO:0019902;phosphatase binding;0.000490883120856533!GO:0045055;regulated secretory pathway;0.000493710139176741!GO:0016197;endosome transport;0.000521685587311602!GO:0004386;helicase activity;0.000532917891389267!GO:0015980;energy derivation by oxidation of organic compounds;0.000553635622683673!GO:0030532;small nuclear ribonucleoprotein complex;0.000554795822623971!GO:0004674;protein serine/threonine kinase activity;0.000589024345741473!GO:0008026;ATP-dependent helicase activity;0.000609668249426558!GO:0008021;synaptic vesicle;0.000648410020010134!GO:0009108;coenzyme biosynthetic process;0.000689983230968914!GO:0043492;ATPase activity, coupled to movement of substances;0.000692427511252817!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000767557676151632!GO:0006606;protein import into nucleus;0.000816223182207607!GO:0031968;organelle outer membrane;0.000827578503996622!GO:0006650;glycerophospholipid metabolic process;0.000844016597648694!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000851901960049237!GO:0019888;protein phosphatase regulator activity;0.000943073845397233!GO:0019867;outer membrane;0.000967117994947936!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000982766297442205!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000984910734408381!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00101311590264591!GO:0022406;membrane docking;0.00108652848492492!GO:0048278;vesicle docking;0.00108652848492492!GO:0051170;nuclear import;0.00110280167441652!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00114170526060178!GO:0043623;cellular protein complex assembly;0.00116444525283107!GO:0051028;mRNA transport;0.00121761792825264!GO:0003729;mRNA binding;0.00126658235401181!GO:0005048;signal sequence binding;0.00128881868450173!GO:0003779;actin binding;0.00136075617772589!GO:0006904;vesicle docking during exocytosis;0.00136806563962959!GO:0005085;guanyl-nucleotide exchange factor activity;0.00142060820245276!GO:0042254;ribosome biogenesis and assembly;0.00143120089757151!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00166077422431467!GO:0004812;aminoacyl-tRNA ligase activity;0.00166077422431467!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00166077422431467!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00167165859705017!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00167165859705017!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00167165859705017!GO:0046467;membrane lipid biosynthetic process;0.00170527115591608!GO:0005813;centrosome;0.00173238493027518!GO:0005839;proteasome core complex (sensu Eukaryota);0.00174071098743503!GO:0004721;phosphoprotein phosphatase activity;0.00190465952124697!GO:0008219;cell death;0.00197944296887908!GO:0016265;death;0.00197944296887908!GO:0030118;clathrin coat;0.00200856251736286!GO:0003714;transcription corepressor activity;0.00201909190579897!GO:0016050;vesicle organization and biogenesis;0.00208674903688278!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00208674903688278!GO:0055083;monovalent inorganic anion homeostasis;0.00208674903688278!GO:0055064;chloride ion homeostasis;0.00208674903688278!GO:0030644;cellular chloride ion homeostasis;0.00208674903688278!GO:0030133;transport vesicle;0.0020890694446197!GO:0006607;NLS-bearing substrate import into nucleus;0.00213222840694585!GO:0006402;mRNA catabolic process;0.00215066478630603!GO:0008154;actin polymerization and/or depolymerization;0.00220946194661498!GO:0043038;amino acid activation;0.00220946194661498!GO:0006418;tRNA aminoacylation for protein translation;0.00220946194661498!GO:0043039;tRNA aminoacylation;0.00220946194661498!GO:0048487;beta-tubulin binding;0.00222926277929039!GO:0005773;vacuole;0.00227097511485411!GO:0031901;early endosome membrane;0.00227097511485411!GO:0005875;microtubule associated complex;0.00227176765409185!GO:0051129;negative regulation of cellular component organization and biogenesis;0.00230691970270237!GO:0051726;regulation of cell cycle;0.0023646913991996!GO:0016311;dephosphorylation;0.00243724394783927!GO:0016740;transferase activity;0.0026747250109568!GO:0005938;cell cortex;0.00279702411094223!GO:0012501;programmed cell death;0.00281974567754016!GO:0005516;calmodulin binding;0.0028488884985514!GO:0007049;cell cycle;0.00287838175495756!GO:0006891;intra-Golgi vesicle-mediated transport;0.00308660040144426!GO:0009966;regulation of signal transduction;0.00310966169344726!GO:0051276;chromosome organization and biogenesis;0.00316795623875535!GO:0046578;regulation of Ras protein signal transduction;0.00318058839300458!GO:0000314;organellar small ribosomal subunit;0.00318058839300458!GO:0005763;mitochondrial small ribosomal subunit;0.00318058839300458!GO:0051427;hormone receptor binding;0.00319273693802594!GO:0009117;nucleotide metabolic process;0.00325022427361514!GO:0006915;apoptosis;0.00333406792175972!GO:0006612;protein targeting to membrane;0.00336219906557927!GO:0000074;regulation of progression through cell cycle;0.00351112209814493!GO:0005869;dynactin complex;0.00360693840322021!GO:0030384;phosphoinositide metabolic process;0.0036635378839308!GO:0050767;regulation of neurogenesis;0.00382633012805648!GO:0005815;microtubule organizing center;0.00393565188910283!GO:0051168;nuclear export;0.00411061861108395!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00415453088380582!GO:0008186;RNA-dependent ATPase activity;0.00417388680847595!GO:0006333;chromatin assembly or disassembly;0.00420894281152019!GO:0065002;intracellular protein transport across a membrane;0.00442685981709994!GO:0030427;site of polarized growth;0.0045825870409195!GO:0008286;insulin receptor signaling pathway;0.00459804841120033!GO:0006916;anti-apoptosis;0.00464679295772932!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0046725815799283!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00481854751079268!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00481854751079268!GO:0050789;regulation of biological process;0.00487095913581792!GO:0006892;post-Golgi vesicle-mediated transport;0.00518849654069166!GO:0043021;ribonucleoprotein binding;0.00533180039424496!GO:0016791;phosphoric monoester hydrolase activity;0.00533180039424496!GO:0043209;myelin sheath;0.00542801337363453!GO:0035257;nuclear hormone receptor binding;0.00553032589817349!GO:0043069;negative regulation of programmed cell death;0.0057534974565967!GO:0051087;chaperone binding;0.00598536347871461!GO:0004298;threonine endopeptidase activity;0.00604477172105513!GO:0007019;microtubule depolymerization;0.00604579838001888!GO:0048167;regulation of synaptic plasticity;0.00604931737333443!GO:0030426;growth cone;0.00607256896168187!GO:0009165;nucleotide biosynthetic process;0.00667419265526211!GO:0007017;microtubule-based process;0.00680121301514774!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00689268355511093!GO:0043066;negative regulation of apoptosis;0.00696864227294862!GO:0033673;negative regulation of kinase activity;0.00698917871763107!GO:0006469;negative regulation of protein kinase activity;0.00698917871763107!GO:0006414;translational elongation;0.00706776875678956!GO:0006470;protein amino acid dephosphorylation;0.00734414176755704!GO:0031902;late endosome membrane;0.00802847647492988!GO:0043681;protein import into mitochondrion;0.00809416821296161!GO:0044448;cell cortex part;0.00823189289379731!GO:0050794;regulation of cellular process;0.00847494674887793!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00848283715131712!GO:0004667;prostaglandin-D synthase activity;0.00848283715131712!GO:0050802;circadian sleep/wake cycle, sleep;0.00848283715131712!GO:0022410;circadian sleep/wake cycle process;0.00848283715131712!GO:0042749;regulation of circadian sleep/wake cycle;0.00848283715131712!GO:0048500;signal recognition particle;0.00860306274068731!GO:0004722;protein serine/threonine phosphatase activity;0.00860306274068731!GO:0046474;glycerophospholipid biosynthetic process;0.00860895370458034!GO:0003713;transcription coactivator activity;0.00861046094425893!GO:0009892;negative regulation of metabolic process;0.00869775999954217!GO:0006366;transcription from RNA polymerase II promoter;0.0088161486544506!GO:0008361;regulation of cell size;0.00902096841920177!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00904180152916692!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.00914743935228096!GO:0019904;protein domain specific binding;0.00925548350222387!GO:0051261;protein depolymerization;0.00939538851442629!GO:0050811;GABA receptor binding;0.00944141776366346!GO:0051540;metal cluster binding;0.00961471562309045!GO:0051536;iron-sulfur cluster binding;0.00961471562309045!GO:0051920;peroxiredoxin activity;0.00993124386373713!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0100785244519117!GO:0008139;nuclear localization sequence binding;0.0101176342014494!GO:0031124;mRNA 3'-end processing;0.0101644447640955!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0102931487666028!GO:0007005;mitochondrion organization and biogenesis;0.0105117902202154!GO:0004004;ATP-dependent RNA helicase activity;0.0105117902202154!GO:0006974;response to DNA damage stimulus;0.0105117902202154!GO:0032011;ARF protein signal transduction;0.0108094190886829!GO:0032012;regulation of ARF protein signal transduction;0.0108094190886829!GO:0001578;microtubule bundle formation;0.0111006677512917!GO:0019903;protein phosphatase binding;0.0111024559177733!GO:0003746;translation elongation factor activity;0.0111716804063139!GO:0016859;cis-trans isomerase activity;0.0114102828523394!GO:0050803;regulation of synapse structure and activity;0.0117468982310086!GO:0046930;pore complex;0.0118983456116449!GO:0008180;signalosome;0.0118983456116449!GO:0012506;vesicle membrane;0.0127957989512745!GO:0005762;mitochondrial large ribosomal subunit;0.0129275949765336!GO:0000315;organellar large ribosomal subunit;0.0129275949765336!GO:0030867;rough endoplasmic reticulum membrane;0.0130503472378091!GO:0051348;negative regulation of transferase activity;0.0131146342724712!GO:0016363;nuclear matrix;0.0131925955124225!GO:0051539;4 iron, 4 sulfur cluster binding;0.013297140307358!GO:0006643;membrane lipid metabolic process;0.0133375167953833!GO:0031114;regulation of microtubule depolymerization;0.0133716322389283!GO:0007026;negative regulation of microtubule depolymerization;0.0133716322389283!GO:0006364;rRNA processing;0.013638251841181!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0143215717519772!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0144481498458053!GO:0000323;lytic vacuole;0.015453946851337!GO:0005764;lysosome;0.015453946851337!GO:0030660;Golgi-associated vesicle membrane;0.015777944784762!GO:0016049;cell growth;0.0157887542339184!GO:0006399;tRNA metabolic process;0.0160335727949214!GO:0005885;Arp2/3 protein complex;0.0160835240005858!GO:0005774;vacuolar membrane;0.0164542440563676!GO:0048468;cell development;0.016618627128857!GO:0035035;histone acetyltransferase binding;0.0166368632631421!GO:0043488;regulation of mRNA stability;0.0169125469904818!GO:0043487;regulation of RNA stability;0.0169125469904818!GO:0030137;COPI-coated vesicle;0.0174160838829971!GO:0030742;GTP-dependent protein binding;0.017471608398405!GO:0050749;apolipoprotein E receptor binding;0.0177310738429461!GO:0030041;actin filament polymerization;0.0180687403009093!GO:0019887;protein kinase regulator activity;0.0183257368928117!GO:0000059;protein import into nucleus, docking;0.018650240650594!GO:0042026;protein refolding;0.0190478252397757!GO:0004683;calmodulin-dependent protein kinase activity;0.0192163980922474!GO:0030258;lipid modification;0.0198311040586087!GO:0006401;RNA catabolic process;0.0199834137886669!GO:0000062;acyl-CoA binding;0.0203029042734599!GO:0005791;rough endoplasmic reticulum;0.0203135168464228!GO:0005100;Rho GTPase activator activity;0.0212618484609286!GO:0046488;phosphatidylinositol metabolic process;0.0216246328870554!GO:0008250;oligosaccharyl transferase complex;0.0216312960846779!GO:0003690;double-stranded DNA binding;0.0216632205880262!GO:0006818;hydrogen transport;0.0218910823158129!GO:0007272;ensheathment of neurons;0.0218910823158129!GO:0008366;axon ensheathment;0.0218910823158129!GO:0005868;cytoplasmic dynein complex;0.0219608374303209!GO:0007006;mitochondrial membrane organization and biogenesis;0.022257582164972!GO:0051252;regulation of RNA metabolic process;0.0225316073900943!GO:0003711;transcription elongation regulator activity;0.0226264717734883!GO:0008088;axon cargo transport;0.0228196147285926!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.023069181596047!GO:0016072;rRNA metabolic process;0.0231948999846244!GO:0007050;cell cycle arrest;0.0234721260415963!GO:0030658;transport vesicle membrane;0.0234721260415963!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0234721260415963!GO:0045047;protein targeting to ER;0.0234721260415963!GO:0030132;clathrin coat of coated pit;0.0244461368797268!GO:0043087;regulation of GTPase activity;0.0245790659803134!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0248127327117234!GO:0033043;regulation of organelle organization and biogenesis;0.0248127327117234!GO:0005099;Ras GTPase activator activity;0.0248127327117234!GO:0035258;steroid hormone receptor binding;0.0253889732330922!GO:0006383;transcription from RNA polymerase III promoter;0.025674448468799!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0257578031921928!GO:0016481;negative regulation of transcription;0.0257957314655392!GO:0008022;protein C-terminus binding;0.0273105061294898!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0278799538818228!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0282426679654719!GO:0015992;proton transport;0.0284360745369127!GO:0042176;regulation of protein catabolic process;0.0287467533355154!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0289637258444187!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0296026936697248!GO:0015002;heme-copper terminal oxidase activity;0.0296026936697248!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0296026936697248!GO:0004129;cytochrome-c oxidase activity;0.0296026936697248!GO:0030030;cell projection organization and biogenesis;0.0296942793616559!GO:0048858;cell projection morphogenesis;0.0296942793616559!GO:0032990;cell part morphogenesis;0.0296942793616559!GO:0007034;vacuolar transport;0.0299423135334005!GO:0031371;ubiquitin conjugating enzyme complex;0.0300567014681751!GO:0007266;Rho protein signal transduction;0.0300693610394383!GO:0006644;phospholipid metabolic process;0.0304856242877257!GO:0016585;chromatin remodeling complex;0.0305226640882408!GO:0033130;acetylcholine receptor binding;0.0305235089349452!GO:0004576;oligosaccharyl transferase activity;0.0305567533651448!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0306185078621977!GO:0008312;7S RNA binding;0.0306553968509793!GO:0019894;kinesin binding;0.030703633754778!GO:0006376;mRNA splice site selection;0.0311975899242714!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0311975899242714!GO:0000209;protein polyubiquitination;0.0314625496043145!GO:0016615;malate dehydrogenase activity;0.031872310693454!GO:0044433;cytoplasmic vesicle part;0.0320107064855352!GO:0030119;AP-type membrane coat adaptor complex;0.0320940609110832!GO:0019783;small conjugating protein-specific protease activity;0.0336766092276472!GO:0019992;diacylglycerol binding;0.0337800750314546!GO:0001726;ruffle;0.0348148703505489!GO:0001508;regulation of action potential;0.0351425302493154!GO:0001558;regulation of cell growth;0.0352050602326422!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0355584958680709!GO:0043086;negative regulation of catalytic activity;0.0360051034627811!GO:0031123;RNA 3'-end processing;0.0361143972890717!GO:0006661;phosphatidylinositol biosynthetic process;0.0361143972890717!GO:0046489;phosphoinositide biosynthetic process;0.0362892199243164!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0370382232277491!GO:0004672;protein kinase activity;0.0373401481405483!GO:0004183;carboxypeptidase E activity;0.0375359045347352!GO:0030070;insulin processing;0.0375359045347352!GO:0043025;cell soma;0.0378481127519151!GO:0031324;negative regulation of cellular metabolic process;0.038107021380394!GO:0006378;mRNA polyadenylation;0.0387648628806755!GO:0051287;NAD binding;0.0389090281761336!GO:0019207;kinase regulator activity;0.0389389514933635!GO:0006887;exocytosis;0.0392591178469698!GO:0030424;axon;0.0392591178469698!GO:0042670;retinal cone cell differentiation;0.0393083845306548!GO:0051281;positive regulation of release of sequestered calcium ion into cytosol;0.0393083845306548!GO:0046549;retinal cone cell development;0.0393083845306548!GO:0030911;TPR domain binding;0.0400115773283535!GO:0004843;ubiquitin-specific protease activity;0.0420035785605002!GO:0016079;synaptic vesicle exocytosis;0.0422972332074413!GO:0006281;DNA repair;0.0428150231231815!GO:0016579;protein deubiquitination;0.0428588969106253!GO:0022402;cell cycle process;0.0428588969106253!GO:0016126;sterol biosynthetic process;0.0432088892718162!GO:0000287;magnesium ion binding;0.0434525659588044!GO:0005802;trans-Golgi network;0.0443466513878375!GO:0048168;regulation of neuronal synaptic plasticity;0.0443721864493406!GO:0044437;vacuolar part;0.0447839883986779!GO:0005545;phosphatidylinositol binding;0.0450717287377746!GO:0006091;generation of precursor metabolites and energy;0.0451529858097912!GO:0007033;vacuole organization and biogenesis;0.0455931285849824!GO:0005001;transmembrane receptor protein tyrosine phosphatase activity;0.046737606873888!GO:0019198;transmembrane receptor protein phosphatase activity;0.046737606873888!GO:0030131;clathrin adaptor complex;0.0469610978017846!GO:0006665;sphingolipid metabolic process;0.0471808062279739!GO:0005765;lysosomal membrane;0.0474594698925358!GO:0000096;sulfur amino acid metabolic process;0.0489264490124012!GO:0004423;iduronate-2-sulfatase activity;0.0493730429513513!GO:0016272;prefoldin complex;0.0499101292458533 | |||
|sample_id=10176 | |sample_id=10176 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=putamen | |sample_tissue=putamen | ||
|top_motifs=OCT4_SOX2{dimer}:3.74571538107;MYFfamily:3.62338475537;REST:3.52244424456;RFX1:3.47088148592;AHR_ARNT_ARNT2:3.46532716489;EGR1..3:3.39869703495;ZFP161:3.32802404077;MED-1{core}:3.18046667255;NHLH1,2:3.13927012264;FOXM1:3.10953663759;RREB1:3.05905808436;CUX2:3.01311938835;ARID5B:2.90419905348;PRDM1:2.81909026391;RFX2..5_RFXANK_RFXAP:2.79088378139;PRRX1,2:2.74343382848;ZBTB6:2.72684742768;MTE{core}:2.69334612711;NKX6-1,2:2.62172438838;NKX2-3_NKX2-5:2.60155898525;ATF2:2.4906955825;ADNP_IRX_SIX_ZHX:2.4858743509;PAX5:2.47974133455;HBP1_HMGB_SSRP1_UBTF:2.45518339166;MTF1:2.44070847137;CDC5L:2.36056645781;SOX2:2.3396574263;MZF1:2.32157149406;GTF2I:2.31144856396;DBP:2.22367587124;SOX5:2.18886624488;ALX1:2.14973073424;GATA4:2.05001293999;TFAP2B:1.99848068368;NRF1:1.98063339196;KLF4:1.89381848243;LMO2:1.87737616157;HIC1:1.84872749976;TLX2:1.84271062723;PAX6:1.82961355766;ONECUT1,2:1.79489682813;POU1F1:1.74871543802;BREu{core}:1.7412453936;FOXP1:1.73505561053;PATZ1:1.73146810605;POU6F1:1.68191336237;MAZ:1.66929477071;FOXP3:1.63628669807;IKZF2:1.63612609186;SOX{8,9,10}:1.62952498478;PAX4:1.60995517358;RBPJ:1.59352127042;POU3F1..4:1.58981049295;NKX3-2:1.54148090732;FOXD3:1.51283035174;PAX1,9:1.47725057989;HOX{A4,D4}:1.47037715032;HOXA9_MEIS1:1.46420170661;SOX17:1.45097066343;STAT1,3:1.42419282832;GFI1B:1.3854386437;TGIF1:1.35455255504;PBX1:1.34997341008;SMAD1..7,9:1.31009811693;NFIL3:1.26315464302;ZBTB16:1.25235032723;MAFB:1.25169155318;HOX{A6,A7,B6,B7}:1.25062586648;NFIX:1.24063293923;JUN:1.2401697722;FOXN1:1.22538622643;MYOD1:1.14214446139;CRX:1.10378869044;POU5F1:1.10106986382;CREB1:1.08128299191;ZNF143:1.04134037102;ZNF384:1.02652970377;LEF1_TCF7_TCF7L1,2:1.02621919698;HMGA1,2:1.02275861628;TOPORS:1.01338248899;NANOG:1.00806273331;XBP1:0.992323799726;T:0.9772126603;TEF:0.929964741548;SP1:0.870608992502;TFDP1:0.813172241272;EP300:0.807715074733;EBF1:0.795380081484;YY1:0.79047065373;ZIC1..3:0.767634208655;GFI1:0.766279651977;SREBF1,2:0.754849809033;GCM1,2:0.748205871569;FOX{I1,J2}:0.673549812923;HMX1:0.662415724064;BPTF:0.612059689635;ZEB1:0.571262541722;STAT2,4,6:0.565118986966;AR:0.552575456128;GTF2A1,2:0.545527637731;MYBL2:0.519604025273;GZF1:0.471476911666;LHX3,4:0.454724618156;HAND1,2:0.440296668008;PDX1:0.401459212044;ZNF423:0.364283764779;VSX1,2:0.352113029125;FOX{F1,F2,J1}:0.34925339935;TFAP2{A,C}:0.249998505882;PAX2:0.244004931991;NR3C1:0.24379169186;MEF2{A,B,C,D}:0.211552886395;ATF4:0.192403554163;UFEwm:0.167049910654;CDX1,2,4:0.124879941158;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.108381711274;SPZ1:0.105696276737;ATF5_CREB3:0.0945905928571;NFY{A,B,C}:0.0590593521508;TLX1..3_NFIC{dimer}:-0.0194609567203;IKZF1:-0.0370515387551;ZNF238:-0.0393571308568;AIRE:-0.0617172603882;FOXO1,3,4:-0.0787838732173;FOX{D1,D2}:-0.0869302087466;HSF1,2:-0.0920231948126;PAX3,7:-0.134163745702;RORA:-0.189837065966;IRF7:-0.210383829341;ESRRA:-0.211071321315;SNAI1..3:-0.216120768858;bHLH_family:-0.243496330471;DMAP1_NCOR{1,2}_SMARC:-0.318981060025;NKX3-1:-0.361302027625;NFE2L1:-0.368032430951;IRF1,2:-0.393579511318;PITX1..3:-0.411944391303;CEBPA,B_DDIT3:-0.486864479331;SPI1:-0.497404355694;NFE2L2:-0.507242716894;FOXQ1:-0.553007203505;TBX4,5:-0.565858942004;NFE2:-0.567802322779;FOXL1:-0.61240008152;NR5A1,2:-0.676293298786;XCPE1{core}:-0.681275433598;GATA6:-0.684785657419;RXR{A,B,G}:-0.697424642369;NFATC1..3:-0.707148552585;NANOG{mouse}:-0.789183935958;SPIB:-0.809746431145;NKX2-2,8:-0.813720674513;HIF1A:-0.817615522139;EVI1:-0.888687135185;ATF6:-0.894254659141;ETS1,2:-0.912052370977;FOS_FOS{B,L1}_JUN{B,D}:-0.931808279441;HNF1A:-0.953796792612;FOSL2:-1.01865643429;TFAP4:-1.03287605221;ELK1,4_GABP{A,B1}:-1.03332404768;HNF4A_NR2F1,2:-1.04605769554;ALX4:-1.09583877191;FOXA2:-1.12071809042;NKX2-1,4:-1.12290426628;POU2F1..3:-1.12705577592;BACH2:-1.12764749491;RXRA_VDR{dimer}:-1.16602315343;TEAD1:-1.18680679495;MYB:-1.20756186365;PAX8:-1.20890125074;NR1H4:-1.22498635741;NFKB1_REL_RELA:-1.22987240858;TP53:-1.25446481169;TFCP2:-1.29089575941;ZNF148:-1.30168916313;RUNX1..3:-1.32914620966;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.33957065153;GLI1..3:-1.36468147323;E2F1..5:-1.37676092556;ESR1:-1.44526034945;ELF1,2,4:-1.59241447172;HLF:-1.60480781922;TBP:-1.61910559777;HES1:-1.72127434655;SRF:-1.93829764317;NR6A1:-1.99990530776;TAL1_TCF{3,4,12}:-2.01597414788;STAT5{A,B}:-2.44005633842;EN1,2:-2.50943029737;HOX{A5,B5}:-2.74859820823;PPARG:-2.76312280038 | |top_motifs=OCT4_SOX2{dimer}:3.74571538107;MYFfamily:3.62338475537;REST:3.52244424456;RFX1:3.47088148592;AHR_ARNT_ARNT2:3.46532716489;EGR1..3:3.39869703495;ZFP161:3.32802404077;MED-1{core}:3.18046667255;NHLH1,2:3.13927012264;FOXM1:3.10953663759;RREB1:3.05905808436;CUX2:3.01311938835;ARID5B:2.90419905348;PRDM1:2.81909026391;RFX2..5_RFXANK_RFXAP:2.79088378139;PRRX1,2:2.74343382848;ZBTB6:2.72684742768;MTE{core}:2.69334612711;NKX6-1,2:2.62172438838;NKX2-3_NKX2-5:2.60155898525;ATF2:2.4906955825;ADNP_IRX_SIX_ZHX:2.4858743509;PAX5:2.47974133455;HBP1_HMGB_SSRP1_UBTF:2.45518339166;MTF1:2.44070847137;CDC5L:2.36056645781;SOX2:2.3396574263;MZF1:2.32157149406;GTF2I:2.31144856396;DBP:2.22367587124;SOX5:2.18886624488;ALX1:2.14973073424;GATA4:2.05001293999;TFAP2B:1.99848068368;NRF1:1.98063339196;KLF4:1.89381848243;LMO2:1.87737616157;HIC1:1.84872749976;TLX2:1.84271062723;PAX6:1.82961355766;ONECUT1,2:1.79489682813;POU1F1:1.74871543802;BREu{core}:1.7412453936;FOXP1:1.73505561053;PATZ1:1.73146810605;POU6F1:1.68191336237;MAZ:1.66929477071;FOXP3:1.63628669807;IKZF2:1.63612609186;SOX{8,9,10}:1.62952498478;PAX4:1.60995517358;RBPJ:1.59352127042;POU3F1..4:1.58981049295;NKX3-2:1.54148090732;FOXD3:1.51283035174;PAX1,9:1.47725057989;HOX{A4,D4}:1.47037715032;HOXA9_MEIS1:1.46420170661;SOX17:1.45097066343;STAT1,3:1.42419282832;GFI1B:1.3854386437;TGIF1:1.35455255504;PBX1:1.34997341008;SMAD1..7,9:1.31009811693;NFIL3:1.26315464302;ZBTB16:1.25235032723;MAFB:1.25169155318;HOX{A6,A7,B6,B7}:1.25062586648;NFIX:1.24063293923;JUN:1.2401697722;FOXN1:1.22538622643;MYOD1:1.14214446139;CRX:1.10378869044;POU5F1:1.10106986382;CREB1:1.08128299191;ZNF143:1.04134037102;ZNF384:1.02652970377;LEF1_TCF7_TCF7L1,2:1.02621919698;HMGA1,2:1.02275861628;TOPORS:1.01338248899;NANOG:1.00806273331;XBP1:0.992323799726;T:0.9772126603;TEF:0.929964741548;SP1:0.870608992502;TFDP1:0.813172241272;EP300:0.807715074733;EBF1:0.795380081484;YY1:0.79047065373;ZIC1..3:0.767634208655;GFI1:0.766279651977;SREBF1,2:0.754849809033;GCM1,2:0.748205871569;FOX{I1,J2}:0.673549812923;HMX1:0.662415724064;BPTF:0.612059689635;ZEB1:0.571262541722;STAT2,4,6:0.565118986966;AR:0.552575456128;GTF2A1,2:0.545527637731;MYBL2:0.519604025273;GZF1:0.471476911666;LHX3,4:0.454724618156;HAND1,2:0.440296668008;PDX1:0.401459212044;ZNF423:0.364283764779;VSX1,2:0.352113029125;FOX{F1,F2,J1}:0.34925339935;TFAP2{A,C}:0.249998505882;PAX2:0.244004931991;NR3C1:0.24379169186;MEF2{A,B,C,D}:0.211552886395;ATF4:0.192403554163;UFEwm:0.167049910654;CDX1,2,4:0.124879941158;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.108381711274;SPZ1:0.105696276737;ATF5_CREB3:0.0945905928571;NFY{A,B,C}:0.0590593521508;TLX1..3_NFIC{dimer}:-0.0194609567203;IKZF1:-0.0370515387551;ZNF238:-0.0393571308568;AIRE:-0.0617172603882;FOXO1,3,4:-0.0787838732173;FOX{D1,D2}:-0.0869302087466;HSF1,2:-0.0920231948126;PAX3,7:-0.134163745702;RORA:-0.189837065966;IRF7:-0.210383829341;ESRRA:-0.211071321315;SNAI1..3:-0.216120768858;bHLH_family:-0.243496330471;DMAP1_NCOR{1,2}_SMARC:-0.318981060025;NKX3-1:-0.361302027625;NFE2L1:-0.368032430951;IRF1,2:-0.393579511318;PITX1..3:-0.411944391303;CEBPA,B_DDIT3:-0.486864479331;SPI1:-0.497404355694;NFE2L2:-0.507242716894;FOXQ1:-0.553007203505;TBX4,5:-0.565858942004;NFE2:-0.567802322779;FOXL1:-0.61240008152;NR5A1,2:-0.676293298786;XCPE1{core}:-0.681275433598;GATA6:-0.684785657419;RXR{A,B,G}:-0.697424642369;NFATC1..3:-0.707148552585;NANOG{mouse}:-0.789183935958;SPIB:-0.809746431145;NKX2-2,8:-0.813720674513;HIF1A:-0.817615522139;EVI1:-0.888687135185;ATF6:-0.894254659141;ETS1,2:-0.912052370977;FOS_FOS{B,L1}_JUN{B,D}:-0.931808279441;HNF1A:-0.953796792612;FOSL2:-1.01865643429;TFAP4:-1.03287605221;ELK1,4_GABP{A,B1}:-1.03332404768;HNF4A_NR2F1,2:-1.04605769554;ALX4:-1.09583877191;FOXA2:-1.12071809042;NKX2-1,4:-1.12290426628;POU2F1..3:-1.12705577592;BACH2:-1.12764749491;RXRA_VDR{dimer}:-1.16602315343;TEAD1:-1.18680679495;MYB:-1.20756186365;PAX8:-1.20890125074;NR1H4:-1.22498635741;NFKB1_REL_RELA:-1.22987240858;TP53:-1.25446481169;TFCP2:-1.29089575941;ZNF148:-1.30168916313;RUNX1..3:-1.32914620966;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.33957065153;GLI1..3:-1.36468147323;E2F1..5:-1.37676092556;ESR1:-1.44526034945;ELF1,2,4:-1.59241447172;HLF:-1.60480781922;TBP:-1.61910559777;HES1:-1.72127434655;SRF:-1.93829764317;NR6A1:-1.99990530776;TAL1_TCF{3,4,12}:-2.01597414788;STAT5{A,B}:-2.44005633842;EN1,2:-2.50943029737;HOX{A5,B5}:-2.74859820823;PPARG:-2.76312280038 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10176-103C5;search_select_hide=table117:FF:10176-103C5 | |||
}} | }} | ||
Latest revision as of 12:25, 3 June 2020
| Name: | putamen, adult, donor10196 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12324 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12324
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12324
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0668 |
| 10 | 10 | 0.0449 |
| 100 | 100 | 0.34 |
| 101 | 101 | 0.378 |
| 102 | 102 | 0.66 |
| 103 | 103 | 0.132 |
| 104 | 104 | 0.134 |
| 105 | 105 | 0.125 |
| 106 | 106 | 0.0244 |
| 107 | 107 | 0.0954 |
| 108 | 108 | 0.94 |
| 109 | 109 | 0.00515 |
| 11 | 11 | 0.0152 |
| 110 | 110 | 0.0561 |
| 111 | 111 | 0.199 |
| 112 | 112 | 0.452 |
| 113 | 113 | 0.631 |
| 114 | 114 | 0.204 |
| 115 | 115 | 0.735 |
| 116 | 116 | 0.18 |
| 117 | 117 | 0.0113 |
| 118 | 118 | 0.188 |
| 119 | 119 | 0.146 |
| 12 | 12 | 0.831 |
| 120 | 120 | 0.171 |
| 121 | 121 | 0.236 |
| 122 | 122 | 0.96 |
| 123 | 123 | 0.712 |
| 124 | 124 | 0.165 |
| 125 | 125 | 0.47 |
| 126 | 126 | 0.0289 |
| 127 | 127 | 0.298 |
| 128 | 128 | 0.163 |
| 129 | 129 | 0.411 |
| 13 | 13 | 0.00154 |
| 130 | 130 | 0.279 |
| 131 | 131 | 0.125 |
| 132 | 132 | 0.723 |
| 133 | 133 | 0.00964 |
| 134 | 134 | 0.715 |
| 135 | 135 | 0.346 |
| 136 | 136 | 0.0114 |
| 137 | 137 | 0.556 |
| 138 | 138 | 0.919 |
| 139 | 139 | 0.198 |
| 14 | 14 | 0.783 |
| 140 | 140 | 0.612 |
| 141 | 141 | 0.469 |
| 142 | 142 | 0.768 |
| 143 | 143 | 0.0195 |
| 144 | 144 | 0.84 |
| 145 | 145 | 0.152 |
| 146 | 146 | 0.308 |
| 147 | 147 | 0.988 |
| 148 | 148 | 0.111 |
| 149 | 149 | 0.245 |
| 15 | 15 | 0.0746 |
| 150 | 150 | 0.144 |
| 151 | 151 | 0.521 |
| 152 | 152 | 0.0674 |
| 153 | 153 | 0.734 |
| 154 | 154 | 0.352 |
| 155 | 155 | 0.765 |
| 156 | 156 | 0.47 |
| 157 | 157 | 0.414 |
| 158 | 158 | 0.664 |
| 159 | 159 | 0.0589 |
| 16 | 16 | 0.0684 |
| 160 | 160 | 0.215 |
| 161 | 161 | 0.295 |
| 162 | 162 | 0.83 |
| 163 | 163 | 0.933 |
| 164 | 164 | 0.0345 |
| 165 | 165 | 0.0426 |
| 166 | 166 | 0.942 |
| 167 | 167 | 0.86 |
| 168 | 168 | 0.221 |
| 169 | 169 | 0.00969 |
| 17 | 17 | 0.117 |
| 18 | 18 | 0.168 |
| 19 | 19 | 0.113 |
| 2 | 2 | 0.768 |
| 20 | 20 | 0.179 |
| 21 | 21 | 0.144 |
| 22 | 22 | 0.147 |
| 23 | 23 | 0.22 |
| 24 | 24 | 0.0478 |
| 25 | 25 | 0.461 |
| 26 | 26 | 2.46237e-4 |
| 27 | 27 | 0.643 |
| 28 | 28 | 0.767 |
| 29 | 29 | 0.0186 |
| 3 | 3 | 0.0544 |
| 30 | 30 | 0.99 |
| 31 | 31 | 0.769 |
| 32 | 32 | 0.0343 |
| 33 | 33 | 0.0609 |
| 34 | 34 | 0.621 |
| 35 | 35 | 0.816 |
| 36 | 36 | 0.128 |
| 37 | 37 | 0.0385 |
| 38 | 38 | 0.293 |
| 39 | 39 | 0.231 |
| 4 | 4 | 0.751 |
| 40 | 40 | 0.026 |
| 41 | 41 | 0.346 |
| 42 | 42 | 0.285 |
| 43 | 43 | 0.0973 |
| 44 | 44 | 0.255 |
| 45 | 45 | 0.597 |
| 46 | 46 | 0.0773 |
| 47 | 47 | 0.0685 |
| 48 | 48 | 0.0556 |
| 49 | 49 | 0.168 |
| 5 | 5 | 0.372 |
| 50 | 50 | 0.28 |
| 51 | 51 | 0.469 |
| 52 | 52 | 0.433 |
| 53 | 53 | 0.956 |
| 54 | 54 | 0.382 |
| 55 | 55 | 0.41 |
| 56 | 56 | 0.494 |
| 57 | 57 | 0.31 |
| 58 | 58 | 0.297 |
| 59 | 59 | 0.0684 |
| 6 | 6 | 0.944 |
| 60 | 60 | 0.0472 |
| 61 | 61 | 0.12 |
| 62 | 62 | 0.162 |
| 63 | 63 | 0.17 |
| 64 | 64 | 0.184 |
| 65 | 65 | 0.185 |
| 66 | 66 | 0.147 |
| 67 | 67 | 0.31 |
| 68 | 68 | 0.122 |
| 69 | 69 | 0.359 |
| 7 | 7 | 0.0504 |
| 70 | 70 | 0.046 |
| 71 | 71 | 0.0101 |
| 72 | 72 | 0.361 |
| 73 | 73 | 0.0275 |
| 74 | 74 | 0.653 |
| 75 | 75 | 0.0388 |
| 76 | 76 | 0.517 |
| 77 | 77 | 0.132 |
| 78 | 78 | 0.00207 |
| 79 | 79 | 0.231 |
| 8 | 8 | 0.062 |
| 80 | 80 | 0.503 |
| 81 | 81 | 0.639 |
| 82 | 82 | 0.587 |
| 83 | 83 | 0.0667 |
| 84 | 84 | 0.892 |
| 85 | 85 | 0.196 |
| 86 | 86 | 0.225 |
| 87 | 87 | 8.58404e-4 |
| 88 | 88 | 0.797 |
| 89 | 89 | 0.481 |
| 9 | 9 | 0.347 |
| 90 | 90 | 0.0723 |
| 91 | 91 | 0.407 |
| 92 | 92 | 0.471 |
| 93 | 93 | 0.954 |
| 94 | 94 | 0.239 |
| 95 | 95 | 0.0239 |
| 96 | 96 | 0.783 |
| 97 | 97 | 0.66 |
| 98 | 98 | 0.258 |
| 99 | 99 | 0.537 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12324
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001874 (putamen)
0000369 (corpus striatum)
0002435 (striatum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009663 (telencephalic nucleus)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0000125 (neural nucleus)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0005383 (caudate-putamen)
0010011 (collection of basal ganglia)
0000204 (ventral part of telencephalon)
0005382 (dorsal striatum)
0000454 (cerebral subcortex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010087 (human putamen - adult donor sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
