FF:10177-103C6: Difference between revisions

Latest revision as of 12:25, 3 June 2020

Name:	caudate nucleus - adult, donor10196
Species:	Human (Homo sapiens)
Library ID:	CNhs13802
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	caudate nucleus
dev stage	NA
sex	female
age	60
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005155

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13802		CAGE		DRX008629		DRR009501

Accession ID Hg19

Library id		BAM		CTSS
CNhs13802		DRZ000926		DRZ002311

Accession ID Hg38

Library id		BAM		CTSS
CNhs13802		DRZ012276		DRZ013661

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.275
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.565
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.321
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.857
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.443
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.275
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.175
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.668
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.14
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.235
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.798
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0609
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.275
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.8
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0347
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.857
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.275
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.275
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.238
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.657
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.275
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.623
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.275
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	1.127
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.563
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.275
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0.735
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.443
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.275
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13802

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.044
MA0003.1	MA0003.1	0.322
MA0004.1	MA0004.1	0.292
MA0006.1	MA0006.1	0.244
MA0007.1	MA0007.1	0.471
MA0009.1	MA0009.1	0.495
MA0014.1	MA0014.1	0.722
MA0017.1	MA0017.1	0.0186
MA0018.2	MA0018.2	0.0768
MA0019.1	MA0019.1	0.799
MA0024.1	MA0024.1	0.754
MA0025.1	MA0025.1	0.313
MA0027.1	MA0027.1	0.95
MA0028.1	MA0028.1	0.0505
MA0029.1	MA0029.1	0.0331
MA0030.1	MA0030.1	0.689
MA0031.1	MA0031.1	0.806
MA0035.2	MA0035.2	0.0348
MA0038.1	MA0038.1	0.0644
MA0039.2	MA0039.2	0.143
MA0040.1	MA0040.1	0.846
MA0041.1	MA0041.1	0.181
MA0042.1	MA0042.1	0.501
MA0043.1	MA0043.1	0.497
MA0046.1	MA0046.1	0.0193
MA0047.2	MA0047.2	0.0866
MA0048.1	MA0048.1	0.0777
MA0050.1	MA0050.1	0.00794
MA0051.1	MA0051.1	0.044
MA0052.1	MA0052.1	0.467
MA0055.1	MA0055.1	0.00101
MA0057.1	MA0057.1	0.978
MA0058.1	MA0058.1	0.235
MA0059.1	MA0059.1	0.0884
MA0060.1	MA0060.1	0.485
MA0061.1	MA0061.1	0.00706
MA0062.2	MA0062.2	7.56069e-4
MA0065.2	MA0065.2	0.00309
MA0066.1	MA0066.1	0.0819
MA0067.1	MA0067.1	0.485
MA0068.1	MA0068.1	0.95
MA0069.1	MA0069.1	0.676
MA0070.1	MA0070.1	0.346
MA0071.1	MA0071.1	0.0123
MA0072.1	MA0072.1	0.4
MA0073.1	MA0073.1	0.397
MA0074.1	MA0074.1	0.211
MA0076.1	MA0076.1	0.102
MA0077.1	MA0077.1	0.0975
MA0078.1	MA0078.1	0.794
MA0079.2	MA0079.2	0.77
MA0080.2	MA0080.2	1.16233e-8
MA0081.1	MA0081.1	0.0247
MA0083.1	MA0083.1	0.137
MA0084.1	MA0084.1	0.239
MA0087.1	MA0087.1	0.229
MA0088.1	MA0088.1	0.144
MA0090.1	MA0090.1	0.285
MA0091.1	MA0091.1	0.165
MA0092.1	MA0092.1	0.365
MA0093.1	MA0093.1	0.318
MA0099.2	MA0099.2	3.06842e-14
MA0100.1	MA0100.1	0.769
MA0101.1	MA0101.1	0.00538
MA0102.2	MA0102.2	0.306
MA0103.1	MA0103.1	0.161
MA0104.2	MA0104.2	0.485
MA0105.1	MA0105.1	0.00226
MA0106.1	MA0106.1	0.00993
MA0107.1	MA0107.1	0.00624
MA0108.2	MA0108.2	0.553
MA0111.1	MA0111.1	0.573
MA0112.2	MA0112.2	0.00212
MA0113.1	MA0113.1	0.673
MA0114.1	MA0114.1	0.00896
MA0115.1	MA0115.1	0.926
MA0116.1	MA0116.1	0.00817
MA0117.1	MA0117.1	0.752
MA0119.1	MA0119.1	0.0991
MA0122.1	MA0122.1	0.546
MA0124.1	MA0124.1	0.92
MA0125.1	MA0125.1	0.127
MA0131.1	MA0131.1	0.743
MA0135.1	MA0135.1	0.0349
MA0136.1	MA0136.1	9.31511e-12
MA0137.2	MA0137.2	0.0138
MA0138.2	MA0138.2	0.416
MA0139.1	MA0139.1	0.45
MA0140.1	MA0140.1	0.0156
MA0141.1	MA0141.1	0.0127
MA0142.1	MA0142.1	0.484
MA0143.1	MA0143.1	0.155
MA0144.1	MA0144.1	0.806
MA0145.1	MA0145.1	0.176
MA0146.1	MA0146.1	0.0055
MA0147.1	MA0147.1	0.372
MA0148.1	MA0148.1	0.0725
MA0149.1	MA0149.1	0.0197
MA0150.1	MA0150.1	5.78916e-4
MA0152.1	MA0152.1	0.783
MA0153.1	MA0153.1	0.605
MA0154.1	MA0154.1	0.0477
MA0155.1	MA0155.1	0.607
MA0156.1	MA0156.1	2.30649e-8
MA0157.1	MA0157.1	0.44
MA0159.1	MA0159.1	0.0393
MA0160.1	MA0160.1	0.0299
MA0162.1	MA0162.1	0.137
MA0163.1	MA0163.1	7.74292e-6
MA0164.1	MA0164.1	0.687
MA0258.1	MA0258.1	0.0315
MA0259.1	MA0259.1	0.848

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13802

Novel motif	Logo	P-value
1	1	0.0585
10	10	0.0364
100	100	0.235
101	101	0.409
102	102	0.927
103	103	0.0909
104	104	0.0488
105	105	0.111
106	106	0.031
107	107	0.125
108	108	0.9
109	109	0.00442
11	11	0.0107
110	110	0.0736
111	111	0.247
112	112	0.615
113	113	0.336
114	114	0.232
115	115	0.947
116	116	0.0773
117	117	0.0077
118	118	0.17
119	119	0.223
12	12	0.636
120	120	0.183
121	121	0.253
122	122	0.74
123	123	0.477
124	124	0.0745
125	125	0.524
126	126	0.0565
127	127	0.592
128	128	0.236
129	129	0.699
13	13	0.00148
130	130	0.428
131	131	0.0332
132	132	0.648
133	133	0.00311
134	134	0.751
135	135	0.0789
136	136	0.00201
137	137	0.899
138	138	0.841
139	139	0.399
14	14	0.763
140	140	0.558
141	141	0.607
142	142	0.601
143	143	0.0882
144	144	0.958
145	145	0.142
146	146	0.4
147	147	0.92
148	148	0.348
149	149	0.46
15	15	0.0727
150	150	0.137
151	151	0.548
152	152	0.0571
153	153	0.89
154	154	0.569
155	155	0.576
156	156	0.648
157	157	0.493
158	158	0.505
159	159	0.0762
16	16	0.0506
160	160	0.26
161	161	0.485
162	162	0.724
163	163	0.787
164	164	0.00818
165	165	0.221
166	166	0.785
167	167	0.636
168	168	0.345
169	169	0.00891
17	17	0.141
18	18	0.0956
19	19	0.188
2	2	0.878
20	20	0.0833
21	21	0.0531
22	22	0.157
23	23	0.604
24	24	0.0702
25	25	0.433
26	26	1.68759e-4
27	27	0.933
28	28	0.866
29	29	0.0121
3	3	0.0327
30	30	0.648
31	31	0.893
32	32	0.0081
33	33	0.0594
34	34	0.645
35	35	0.668
36	36	0.193
37	37	0.0253
38	38	0.364
39	39	0.387
4	4	0.83
40	40	0.0552
41	41	0.468
42	42	0.247
43	43	0.106
44	44	0.248
45	45	0.714
46	46	0.0535
47	47	0.0701
48	48	0.0437
49	49	0.18
5	5	0.621
50	50	0.259
51	51	0.457
52	52	0.592
53	53	0.953
54	54	0.397
55	55	0.555
56	56	0.486
57	57	0.221
58	58	0.373
59	59	0.0621
6	6	0.938
60	60	0.0667
61	61	0.123
62	62	0.279
63	63	0.173
64	64	0.151
65	65	0.278
66	66	0.131
67	67	0.339
68	68	0.18
69	69	0.419
7	7	0.0716
70	70	0.0303
71	71	0.0107
72	72	0.566
73	73	0.0243
74	74	0.463
75	75	0.0156
76	76	0.331
77	77	0.175
78	78	2.13406e-4
79	79	0.259
8	8	0.0699
80	80	0.932
81	81	0.516
82	82	0.592
83	83	0.0735
84	84	0.526
85	85	0.256
86	86	0.115
87	87	2.80306e-4
88	88	0.538
89	89	0.55
9	9	0.5
90	90	0.0967
91	91	0.526
92	92	0.557
93	93	0.628
94	94	0.161
95	95	0.0201
96	96	0.971
97	97	0.7
98	98	0.2
99	99	0.502

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13802

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010164 human caudate nucleus - adult donor sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001873 (caudate nucleus)
0000369 (corpus striatum)
0002435 (striatum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009663 (telencephalic nucleus)
0002420 (basal ganglion)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0000125 (neural nucleus)
0002020 (gray matter)
0007245 (nuclear complex of neuraxis)
0010317 (germ layer / neural crest derived structure)
0002308 (nucleus of brain)
0010009 (aggregate regional part of brain)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0005383 (caudate-putamen)
0010011 (collection of basal ganglia)
0000204 (ventral part of telencephalon)
0005382 (dorsal striatum)
0000454 (cerebral subcortex)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010164 (human caudate nucleus - adult donor sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010122 (future caudate nucleus)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005155
+|accession_numbers=CAGE;DRX008629;DRR009501;DRZ000926;DRZ002311;DRZ012276;DRZ013661
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001873,UBERON:0000369,UBERON:0002435,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009663,UBERON:0002420,UBERON:0002616,UBERON:0002780,UBERON:0000125,UBERON:0002020,UBERON:0007245,UBERON:0010317,UBERON:0002308,UBERON:0010009,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0005383,UBERON:0010011,UBERON:0000204,UBERON:0005382,UBERON:0000454
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr21:34442439..34442455,+!p1@OLIG1!2.47!295.84!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.45!279.01!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.41!255.09!PEG3;;chr15:80735246..80735321,+!p3@ARNT2!2.10!124.00!ARNT2;;chr9:114287433..114287513,+!p1@ZNF483!1.91!202.83!ZNF483;;chr22:38380543..38380569,-!p1@SOX10!1.91!79.72!SOX10;;chr3:181429704..181429722,+!p1@SOX2!1.90!78.83!SOX2;;chr12:106976678..106976708,+!p2@RFX4!1.87!72.63!RFX4;;chr11:61520075..61520136,+!p1@C11orf9!1.86!145.26!C11orf9;;chr8:40755333..40755352,-!p1@ZMAT4!1.85!69.97!ZMAT4;;chr14:29234581..29234601,+!p2@FOXG1!1.85!69.09!FOXG1;;chr17:53342311..53342400,+!p1@HLF!1.83!76.17!HLF;;chr21:34398234..34398250,+!p1@OLIG2!1.77!58.46!OLIG2;;chr12:106976774..106976788,+!p1@RFX4!1.76!56.69!RFX4;;chr18:55102598..55102623,+!p1@ONECUT2!1.76!56.69!ONECUT2;;chr10:118897911..118897974,-!p1@VAX1!1.75!54.92!VAX1;;chr21:34442540..34442560,+!p2@OLIG1!1.74!54.03!OLIG1;;chr2:60781201..60781258,-!p3@BCL11A!1.74!54.03!BCL11A;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.71!50.49!SMARCE1;;chr13:72441315..72441454,-!p1@DACH1!1.70!94.77!DACH1;;chr10:48355030..48355090,+!p1@ZNF488!1.70!62.00!ZNF488;;chr2:2334997..2335053,-!p1@MYT1L!1.65!43.40!MYT1L;;chrX:25034067..25034088,-!p1@ARX!1.65!43.40!ARX;;chr12:26277817..26277863,-!p2@BHLHE41!1.60!52.26!BHLHE41;;chr14:29235961..29236008,+!p1@FOXG1!1.60!38.97!FOXG1;;chr2:166326200..166326216,+!p1@CSRNP3!1.59!54.92!CSRNP3;;chr9:77112244..77112262,+!p1@RORB!1.58!41.63!RORB;;chr2:145277882..145277967,-!p3@ZEB2!1.56!59.34!ZEB2;;chr8:53322304..53322340,-!p1@ST18!1.55!34.54!ST18;;chr11:31832862..31832884,-!p2@PAX6!1.55!34.54!PAX6;;chr14:33403881..33403924,+!p1@NPAS3!1.53!32.77!NPAS3;;chr17:70117153..70117174,+!p1@SOX9!1.52!312.67!SOX9;;chr9:126774018..126774055,+!p1@LHX2!1.52!31.89!LHX2;;chrX:85969626..85969664,+!p1@DACH2!1.51!31.00!DACH2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.51!31.00!POU3F3;;chr3:181429741..181429767,+!p2@SOX2!1.48!29.23!SOX2;;chr16:1031762..1031781,+!p1@SOX8!1.48!29.23!SOX8;;chrX:82763292..82763317,+!p1@POU3F4!1.47!28.34!POU3F4;;chr2:45168997..45169020,+!p4@SIX3!1.45!27.46!SIX3;;chr19:46801639..46801699,+!p1@HIF3A!1.43!25.69!HIF3A;;chr19:57352109..57352153,-!p2@ZIM2!1.43!25.69!ZIM2;;chr6:19837592..19837621,+!p1@ID4!1.42!149.69!ID4;;chr7:63505799..63505904,+!p1@ZNF727!1.41!24.80!ZNF727;;chr11:31832658..31832681,-!p1@PAX6!1.41!24.80!PAX6;;chr10:64134120..64134183,+!p1@ZNF365!1.40!29.23!ZNF365;;chr15:31658288..31658338,+!p4@KLF13!1.40!23.92!KLF13;;chr13:72441074..72441172,-!p2@DACH1!1.38!23.03!DACH1;;chr2:180726291..180726311,-!p1@ZNF385B!1.36!22.14!ZNF385B;;chr2:45168959..45168990,+!p6@SIX3!1.35!21.26!SIX3;;chr8:53322347..53322378,-!p2@ST18!1.35!21.26!ST18;;chr2:45168875..45168916,+!p1@SIX3!1.33!20.37!SIX3;;chr10:119302232..119302265,+!p1@EMX2!1.33!20.37!EMX2;;chr11:125034640..125034655,+!p1@PKNOX2!1.33!20.37!PKNOX2;;chr19:58545454..58545498,+!p1@ZSCAN1!1.33!20.37!ZSCAN1;;chr19:38085768..38085821,+!p1@ZNF540!1.32!29.23!ZNF540;;chr7:96635448..96635470,+!p5@DLX6!1.31!19.49!DLX6;;chr1:214161272..214161322,+!p1@PROX1!1.29!25.69!PROX1;;chr2:95963052..95963106,+!p1@KCNIP3!1.29!18.60!KCNIP3;;chr12:103351444..103351461,+!p1@ASCL1!1.29!18.60!ASCL1;;chr15:80696703..80696754,+!p1@ARNT2!1.28!23.92!ARNT2;;chr12:26277956..26277980,-!p1@BHLHE41!1.27!62.00!BHLHE41;;chr18:55102628..55102646,+!p2@ONECUT2!1.27!17.71!ONECUT2;;chr7:96654133..96654150,-!p1@DLX5!1.25!16.83!DLX5;;chr22:41763274..41763318,+!p3@TEF!1.25!16.83!TEF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.25!16.83!ZBED1;;chr17:74137321..74137337,-!p1@FOXJ1!1.23!15.94!FOXJ1;;chr1:165414325..165414369,-!p1@RXRG!1.23!15.94!RXRG;;chr12:54779511..54779577,-!p5@ZNF385A!1.23!15.94!ZNF385A;;chr3:141105235..141105307,+!p7@ZBTB38!1.23!15.94!ZBTB38;;chr2:180726254..180726275,-!p4@ZNF385B!1.21!15.06!ZNF385B;;chr1:40105299..40105326,-!p1@HEYL!1.21!15.06!HEYL;;chr14:29236269..29236285,+!p3@FOXG1!1.21!15.06!FOXG1;;chr11:113930425..113930471,+!p1@ZBTB16!1.20!21.26!ZBTB16;;chr14:33408072..33408114,+!p2@NPAS3!1.20!17.71!NPAS3;;chr3:126076242..126076257,-!p1@KLF15!1.18!17.71!KLF15;;chr10:119303078..119303169,+!p2@EMX2!1.18!14.17!EMX2;;chr7:96634878..96634900,+!p2@DLX6!1.18!14.17!DLX6;;chr7:96635665..96635685,+!p6@DLX6!1.18!14.17!DLX6;;chr20:62680984..62680999,-!p1@SOX18!1.16!17.71!SOX18;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.15!13.29!POU3F3;;chr2:180726331..180726344,-!p5@ZNF385B!1.15!13.29!ZNF385B;;chr19:13135582..13135600,+!p3@NFIX!1.15!13.29!NFIX;;chr5:138609489..138609542,+!p8@MATR3!1.15!13.29!MATR3;;chr10:134599649..134599653,-!p1@NKX6-2!1.15!13.29!NKX6-2;;chr14:58797974..58798011,+!p3@ARID4A!1.15!13.29!ARID4A;;chr7:28725740..28725778,+!p1@CREB5!1.14!113.37!CREB5;;chr19:21512202..21512225,-!p1@ZNF708!1.14!65.54!ZNF708;;chr19:13135386..13135435,+!p4@NFIX!1.13!12.40!NFIX;;chr21:34442584..34442587,+!p3@OLIG1!1.13!12.40!OLIG1;;chr12:26277929..26277955,-!p3@BHLHE41!1.11!16.83!BHLHE41;;chr19:38183208..38183225,-!p1@ZNF781!1.10!15.06!ZNF781;;chr19:46800289..46800327,+!p2@HIF3A!1.10!11.51!HIF3A;;chr16:51185318..51185348,-!p2@SALL1!1.10!11.51!SALL1;;chr9:126774058..126774081,+!p3@LHX2!1.10!11.51!LHX2;;chr2:2328095..2328125,-!p7@MYT1L!1.10!11.51!MYT1L;;chr2:42721689..42721723,+!p6@MTA3!1.10!11.51!MTA3;;chr2:45169684..45169715,+!p9@SIX3!1.10!11.51!SIX3;;chr11:31832807..31832823,-!p4@PAX6!1.10!11.51!PAX6;;chr14:33403648..33403710,+!p3@NPAS3!1.10!11.51!NPAS3;;chr6:108487289..108487302,+!p1@NR2E1!1.10!11.51!NR2E1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.10!11.51!RUNX1T1;;chr20:3388541..3388575,-!p2@C20orf194!1.08!43.40!C20orf194;;chr8:80679993..80680011,-!p1@HEY1!1.08!15.94!HEY1;;chr19:49139477..49139552,-!p4@DBP!1.08!14.17!DBP;;chr9:126773880..126773895,+!p2@LHX2!1.07!10.63!LHX2;;chr16:67197654..67197716,+!p3@HSF4!1.07!10.63!HSF4;;chr2:2330039..2330072,-!p6@MYT1L!1.07!10.63!MYT1L;;chr19:38720294..38720348,-!p1@DPF1!1.06!13.29!DPF1;;chr15:61521417..61521460,-!p2@RORA!1.05!23.03!RORA;;chr4:81118647..81118666,+!p1@PRDM8!1.04!13.29!PRDM8;;chr6:126070769..126070801,+!p1@HEY2!1.04!11.51!HEY2;;chr2:2328299..2328363,-!p3@MYT1L!1.03!9.74!MYT1L;;chr2:2335070..2335098,-!p4@MYT1L!1.03!9.74!MYT1L;;chr12:106976656..106976672,+!p4@RFX4!1.03!9.74!RFX4;;chr17:38219209..38219230,+!p1@THRA!1.02!126.66!THRA;;chr3:114343768..114343822,-!p1@ZBTB20!1.02!42.52!ZBTB20;;chr2:113057415..113057477,+!p3@ZC3H6!1.02!12.40!ZC3H6;;chr19:53636125..53636178,-!p1@ZNF415!1.01!26.57!ZNF415;;chr14:21994337..21994442,-!p1@SALL2!1.01!25.69!SALL2;;chr19:38042240..38042309,+!p2@ZNF540!1.01!14.17!ZNF540;;chr1:170632285..170632309,+!p1@PRRX1!1.01!10.63!PRRX1;;chr9:14314131..14314147,-!p2@NFIB!1.00!51.37!NFIB;;chrX:101186981..101187030,-!p1@ZMAT1!1.00!30.12!ZMAT1;;chr1:61548069..61548102,+!p3@NFIA!1.00!22.14!NFIA;;chr3:114819124..114819200,-!p3@ZBTB20!1.00!21.26!ZBTB20;;chr15:37391271..37391376,-!p5@MEIS2!1.00!16.83!MEIS2;;chr11:8102846..8102892,+!p1@TUB!0.99!12.40!TUB;;chr3:141105705..141105770,+!p4@ZBTB38!0.99!10.63!ZBTB38;;chr2:175199675..175199688,+!p1@SP9!0.99!8.86!SP9;;chr2:95963120..95963136,+!p2@KCNIP3!0.99!8.86!KCNIP3;;chr4:26344754..26344772,+!p10@RBPJ!0.99!8.86!RBPJ;;chr4:26344778..26344807,+!p8@RBPJ!0.99!8.86!RBPJ;;chr10:64133862..64133884,+!p4@ZNF365!0.99!8.86!ZNF365;;chr11:31832687..31832704,-!p6@PAX6!0.99!8.86!PAX6;;chr11:47400078..47400106,-!p1@SPI1!0.99!8.86!SPI1;;chr7:115670804..115670825,-!p1@TFEC!0.99!8.86!TFEC;;chr16:30418387..30418422,+!p4@ZNF771!0.99!8.86!ZNF771;;chr19:22193731..22193751,-!p1@ZNF208!0.99!8.86!ZNF208;;chr13:45010939..45011033,-!p1@TSC22D1!0.98!571.30!TSC22D1;;chr9:3525867..3525902,-!p3@RFX3!0.98!30.12!RFX3;;chr19:37096139..37096170,-!p2@ZNF529!0.96!23.03!ZNF529;;chr20:50179368..50179392,-!p2@NFATC2!0.96!10.63!NFATC2;;chr9:4300050..4300118,-!p1@GLIS3!0.95!53.14!GLIS3;;chr19:20748574..20748599,-!p1@ZNF737!0.95!48.72!ZNF737;;chr6:126112039..126112062,+!p8@NCOA7!0.95!9.74!NCOA7;;chr5:158500772..158500802,-!p27@EBF1!0.95!7.97!EBF1;;chr7:50344289..50344323,+!p1@IKZF1!0.95!7.97!IKZF1;;chr10:119302645..119302712,+!p3@EMX2!0.95!7.97!EMX2;;chr11:85393886..85393913,-!p3@CREBZF!0.95!7.97!CREBZF;;chrX:82763265..82763283,+!p2@POU3F4!0.95!7.97!POU3F4;;chr17:7492684..7492778,-!p2@SOX15!0.94!16.83!SOX15;;chr4:206390..206444,+!p1@ZNF876P!0.94!14.17!ZNF876P;;chrX:84498989..84499003,+!p1@ZNF711!0.94!10.63!ZNF711;;chr19:37998036..37998098,+!p2@ZNF793!0.94!9.74!ZNF793;;chr7:28448965..28448994,+!p2@CREB5!0.93!27.46!CREB5;;chr7:64254793..64254813,+!p1@ZNF138!0.91!85.03!ZNF138;;chr9:3525910..3525955,-!p4@RFX3!0.91!22.14!RFX3;;chr9:102584159..102584174,+!p2@NR4A3!0.91!13.29!NR4A3;;chr5:92919100..92919135,+!p3@NR2F1!0.91!8.86!NR2F1;;chr15:37392094..37392116,-!p6@MEIS2!0.91!8.86!MEIS2;;chr1:61548118..61548129,+!p9@NFIA!0.91!7.97!NFIA;;chr19:58545369..58545404,+!p2@ZSCAN1!0.91!7.09!ZSCAN1;;chr19:6110458..6110472,-!p3@RFX2!0.91!7.09!RFX2;;chr21:39870339..39870443,-!p1@ERG!0.91!7.09!ERG;;chr16:85932760..85932775,+!p1@IRF8!0.91!7.09!IRF8;;chr19:30863271..30863338,+!p1@ZNF536!0.91!7.09!ZNF536;;chr9:2159800..2159825,+!p15@SMARCA2!0.91!7.09!SMARCA2;;chr2:45168834..45168847,+!p2@SIX3!0.91!7.09!SIX3;;chr2:45169193..45169219,+!p3@SIX3!0.91!7.09!SIX3;;chr3:114173720..114173794,-!p6@ZBTB20!0.91!7.09!ZBTB20;;chr10:64134045..64134083,+!p3@ZNF365!0.91!7.09!ZNF365;;chr12:103352277..103352324,+!p2@ASCL1!0.91!7.09!ASCL1;;chr14:29236301..29236317,+!p5@FOXG1!0.91!7.09!FOXG1;;chr14:29237009..29237049,+!p4@FOXG1!0.91!7.09!FOXG1;;chr17:38219143..38219154,+!p2@THRA!0.90!25.69!THRA;;chr19:9879350..9879419,-!p2@ZNF846!0.90!15.06!ZNF846;;chr1:61548374..61548415,+!p4@NFIA!0.90!13.29!NFIA;;chr7:86781858..86781879,+!p3@DMTF1!0.90!11.51!DMTF1;;chr1:244219775..244219893,+!p2@ZNF238!0.90!9.74!ZNF238;;chr1:23696348..23696363,-!p4@ZNF436!0.90!7.97!ZNF436;;chr5:92918894..92918912,+!p2@NR2F1!0.89!23.03!NR2F1;;chr5:139487608..139487663,+!p3@PURA!0.89!15.06!PURA;;chr19:58570605..58570655,+!p1@ZNF135!0.89!12.40!ZNF135;;chr12:54785074..54785122,-!p2@ZNF385A!0.89!10.63!ZNF385A;;chr14:2402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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000454;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001873;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002308;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002435;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005382;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009663
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010122,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/caudate%2520nucleus%2520-%2520adult%252c%2520donor10196.CNhs13802.10177-103C6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/caudate%2520nucleus%2520-%2520adult%252c%2520donor10196.CNhs13802.10177-103C6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/caudate%2520nucleus%2520-%2520adult%252c%2520donor10196.CNhs13802.10177-103C6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/caudate%2520nucleus%2520-%2520adult%252c%2520donor10196.CNhs13802.10177-103C6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/caudate%2520nucleus%2520-%2520adult%252c%2520donor10196.CNhs13802.10177-103C6.hg38.nobarcode.ctss.bed.gz
 |id=FF:10177-103C6
 |is_a=EFO:0002091;;FF:0010164
 |is_obsolete=
+|library_id=CNhs13802
+|library_id_phase_based=2:CNhs13802
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10177
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10177
 |name=caudate nucleus - adult, donor10196
 |namespace=FANTOM5
@@ Line 47: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=
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 |rna_box=103
 |rna_catalog_number=
@@ Line 60: / Line 79: @@
 |rna_weight_ug=31.52925
 |sample_age=60
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 81: / Line 101: @@
 |top_motifs=RFX1:3.97346696458;MYFfamily:3.24655563576;ATF2:3.16594569189;AHR_ARNT_ARNT2:3.02069781595;OCT4_SOX2{dimer}:2.99877970891;HOXA9_MEIS1:2.97308312613;RFX2..5_RFXANK_RFXAP:2.94381712358;REST:2.88630914548;NHLH1,2:2.85582946786;SOX2:2.85179855517;MED-1{core}:2.84859001684;ZFP161:2.73941879369;SOX5:2.73860447528;DBP:2.52365820895;PAX5:2.50191947854;PRRX1,2:2.49062350322;MTF1:2.47260688856;PRDM1:2.41585762123;HBP1_HMGB_SSRP1_UBTF:2.39321985258;XBP1:2.35852768356;NFIX:2.34688668548;MTE{core}:2.26372455519;EGR1..3:2.21675411849;GATA4:2.10217041472;GTF2I:2.09856574673;SOX{8,9,10}:2.08486872794;TLX2:2.0727737061;NKX3-2:2.05856036151;ZBTB6:2.05414812139;ARID5B:2.04279531067;CUX2:2.00629891789;RREB1:1.99138708696;STAT1,3:1.97707826111;FOXM1:1.9385610099;MZF1:1.92174639773;MAFB:1.91294340604;TGIF1:1.84194594901;GFI1B:1.81985787135;SOX17:1.81482050516;PAX1,9:1.7501983892;CDC5L:1.68431977831;SMAD1..7,9:1.67209721476;NKX6-1,2:1.66688675466;POU6F1:1.62418216517;HMX1:1.62247972279;T:1.61286239261;RBPJ:1.60834948173;VSX1,2:1.58298693442;JUN:1.56773093931;HIC1:1.55421513715;KLF4:1.51997180557;TFAP2B:1.51157561913;LMO2:1.48465994799;MAZ:1.46521253879;STAT2,4,6:1.4348508566;HOX{A4,D4}:1.42795675921;PAX6:1.40984339022;LEF1_TCF7_TCF7L1,2:1.37700274147;NFIL3:1.36375477831;NRF1:1.3013157805;BREu{core}:1.29845190983;NKX2-3_NKX2-5:1.28459770638;PATZ1:1.25258998429;NANOG:1.20048251291;AR:1.19656126347;LHX3,4:1.1835632771;PBX1:1.14821962337;FOXN1:1.12878099055;FOXP3:1.12104474319;ADNP_IRX_SIX_ZHX:1.11845212421;PDX1:1.09645490845;ESRRA:1.0729039102;ZNF384:0.995655661422;EP300:0.984009224491;CREB1:0.976851626259;CRX:0.969078223756;ALX1:0.962118992268;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.913600376753;ZBTB16:0.909929681921;MYBL2:0.841722475593;MYOD1:0.828804917512;SP1:0.805570188124;GTF2A1,2:0.791492256145;IKZF2:0.775867844713;POU5F1:0.761707591023;HMGA1,2:0.749857937371;RORA:0.740430458198;GFI1:0.711929263773;TFAP2{A,C}:0.682621677479;BPTF:0.676919842198;ZNF238:0.667563737779;SREBF1,2:0.652962612455;FOX{F1,F2,J1}:0.630354067355;ZIC1..3:0.600846710394;ZEB1:0.597710101956;TLX1..3_NFIC{dimer}:0.550788724768;ONECUT1,2:0.517580840772;PAX2:0.509607779693;ZNF143:0.481554825091;NR3C1:0.468033842153;PAX4:0.40852953243;ATF4:0.397693432819;MEF2{A,B,C,D}:0.360261900564;POU1F1:0.347900008616;FOXP1:0.341939850366;FOXD3:0.3348096632;TBX4,5:0.311054700239;HOX{A6,A7,B6,B7}:0.28753190486;IRF7:0.287291137539;SPZ1:0.280342761467;POU3F1..4:0.26138076428;ZNF423:0.227081347509;FOXO1,3,4:0.219226243509;EBF1:0.181290642794;TFDP1:0.17160014233;GZF1:0.151013532583;FOX{D1,D2}:0.135893147998;FOX{I1,J2}:0.0925931398258;ATF5_CREB3:0.0408119797529;HAND1,2:-0.0103099633523;CEBPA,B_DDIT3:-0.0121496299391;ATF6:-0.02018254328;NFY{A,B,C}:-0.081112118148;PAX8:-0.0882415673384;TOPORS:-0.174122486486;IKZF1:-0.200609890393;NFATC1..3:-0.223840157454;UFEwm:-0.246948939535;FOXL1:-0.26455489165;IRF1,2:-0.275446400215;YY1:-0.28816593255;NFE2:-0.312130879721;bHLH_family:-0.352725463098;CDX1,2,4:-0.356320971541;GCM1,2:-0.367033209541;GATA6:-0.372340430449;TBP:-0.433469718245;DMAP1_NCOR{1,2}_SMARC:-0.440342101283;NFE2L2:-0.452511363905;SPI1:-0.477148811656;SNAI1..3:-0.493593226703;NANOG{mouse}:-0.525867429756;EVI1:-0.543819703334;PITX1..3:-0.562678489617;NKX3-1:-0.573205893946;HIF1A:-0.579082420248;NFE2L1:-0.580204653657;TFCP2:-0.59511096662;HES1:-0.635653085552;FOXQ1:-0.63865938481;HSF1,2:-0.639235548326;NKX2-1,4:-0.680333240478;FOXA2:-0.709023713889;ETS1,2:-0.715529023948;RXR{A,B,G}:-0.724494034708;FOS_FOS{B,L1}_JUN{B,D}:-0.733169214003;SPIB:-0.749668631755;HNF4A_NR2F1,2:-0.752052366972;FOSL2:-0.766422043141;HNF1A:-0.796412312568;NR1H4:-0.804008693586;XCPE1{core}:-0.848433281932;TEAD1:-0.88584714327;BACH2:-0.88623690794;TEF:-0.893979780586;TFAP4:-0.977877628875;MYB:-1.02363376659;PAX3,7:-1.03462761219;HLF:-1.06249996415;NFKB1_REL_RELA:-1.07775858646;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.08362975682;ALX4:-1.10775040028;RUNX1..3:-1.14278977741;TP53:-1.15120858168;AIRE:-1.18387003726;NR5A1,2:-1.23770548734;SRF:-1.23823690694;POU2F1..3:-1.26899796409;GLI1..3:-1.2764514915;ELF1,2,4:-1.30000273852;E2F1..5:-1.32660155888;ELK1,4_GABP{A,B1}:-1.46644495259;NKX2-2,8:-1.55922637955;ESR1:-1.56351981799;ZNF148:-1.57103162009;RXRA_VDR{dimer}:-1.60695359306;TAL1_TCF{3,4,12}:-1.71304408974;NR6A1:-1.87818359804;STAT5{A,B}:-1.94996207013;HOX{A5,B5}:-2.05360367771;EN1,2:-2.53738039254;PPARG:-2.69280659749
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10177-103C6;search_select_hide=table117:FF:10177-103C6
 }}

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FF:10177-103C6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:25, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0