FF:10411-106B6: Difference between revisions

Latest revision as of 13:59, 3 June 2020

Name:	renal cell carcinoma cell line:OS-RC-2
Species:	Human (Homo sapiens)
Library ID:	CNhs10729
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	NA
sex	male
age	unknown
cell type	unclassifiable
cell line	OS-RC-2
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005489

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10729		CAGE		DRX007990		DRR008862

Accession ID Hg19

Library id		BAM		CTSS
CNhs10729		DRZ000287		DRZ001672

Accession ID Hg38

Library id		BAM		CTSS
CNhs10729		DRZ011637		DRZ013022

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10053		download		download		download		download

RNA-Seq Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00005489

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
RDhi10062		RNA-Seq		DRX057119		DRR062878

Accession ID Hg19

Library id		BAM		CTSS
RDhi10062		DRZ007954

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0347
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.396
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.156
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0287
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.247
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	1.201
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.102
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0632
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.436
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.158
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.217
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0.27
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.369
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.567
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.361
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10729

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.509
MA0003.1	MA0003.1	0.669
MA0004.1	MA0004.1	0.0402
MA0006.1	MA0006.1	0.0232
MA0007.1	MA0007.1	0.431
MA0009.1	MA0009.1	0.926
MA0014.1	MA0014.1	0.151
MA0017.1	MA0017.1	0.0118
MA0018.2	MA0018.2	2.35942e-5
MA0019.1	MA0019.1	0.227
MA0024.1	MA0024.1	0.00124
MA0025.1	MA0025.1	0.253
MA0027.1	MA0027.1	0.452
MA0028.1	MA0028.1	9.47244e-4
MA0029.1	MA0029.1	0.181
MA0030.1	MA0030.1	0.175
MA0031.1	MA0031.1	0.421
MA0035.2	MA0035.2	0.762
MA0038.1	MA0038.1	6.55207e-5
MA0039.2	MA0039.2	8.86766e-4
MA0040.1	MA0040.1	0.951
MA0041.1	MA0041.1	0.2
MA0042.1	MA0042.1	0.727
MA0043.1	MA0043.1	0.0256
MA0046.1	MA0046.1	2.01922e-53
MA0047.2	MA0047.2	0.796
MA0048.1	MA0048.1	0.616
MA0050.1	MA0050.1	0.0102
MA0051.1	MA0051.1	1.7202e-4
MA0052.1	MA0052.1	0.107
MA0055.1	MA0055.1	0.163
MA0057.1	MA0057.1	0.889
MA0058.1	MA0058.1	0.072
MA0059.1	MA0059.1	0.284
MA0060.1	MA0060.1	4.68693e-10
MA0061.1	MA0061.1	0.133
MA0062.2	MA0062.2	0.0158
MA0065.2	MA0065.2	0.562
MA0066.1	MA0066.1	0.574
MA0067.1	MA0067.1	0.00338
MA0068.1	MA0068.1	0.00339
MA0069.1	MA0069.1	0.901
MA0070.1	MA0070.1	0.25
MA0071.1	MA0071.1	0.376
MA0072.1	MA0072.1	0.278
MA0073.1	MA0073.1	0.532
MA0074.1	MA0074.1	0.608
MA0076.1	MA0076.1	0.00648
MA0077.1	MA0077.1	0.598
MA0078.1	MA0078.1	0.16
MA0079.2	MA0079.2	0.122
MA0080.2	MA0080.2	3.60057e-4
MA0081.1	MA0081.1	0.0533
MA0083.1	MA0083.1	0.568
MA0084.1	MA0084.1	0.0635
MA0087.1	MA0087.1	0.622
MA0088.1	MA0088.1	0.0387
MA0090.1	MA0090.1	6.91976e-6
MA0091.1	MA0091.1	0.0319
MA0092.1	MA0092.1	0.992
MA0093.1	MA0093.1	0.0968
MA0099.2	MA0099.2	2.26582e-14
MA0100.1	MA0100.1	0.745
MA0101.1	MA0101.1	0.0869
MA0102.2	MA0102.2	0.272
MA0103.1	MA0103.1	0.101
MA0104.2	MA0104.2	0.191
MA0105.1	MA0105.1	0.834
MA0106.1	MA0106.1	4.88133e-5
MA0107.1	MA0107.1	0.115
MA0108.2	MA0108.2	0.0832
MA0111.1	MA0111.1	0.396
MA0112.2	MA0112.2	0.31
MA0113.1	MA0113.1	0.204
MA0114.1	MA0114.1	0.00605
MA0115.1	MA0115.1	0.529
MA0116.1	MA0116.1	0.405
MA0117.1	MA0117.1	0.58
MA0119.1	MA0119.1	0.0446
MA0122.1	MA0122.1	0.659
MA0124.1	MA0124.1	0.778
MA0125.1	MA0125.1	0.843
MA0131.1	MA0131.1	0.496
MA0135.1	MA0135.1	0.69
MA0136.1	MA0136.1	0.0332
MA0137.2	MA0137.2	0.257
MA0138.2	MA0138.2	0.0335
MA0139.1	MA0139.1	3.39508e-4
MA0140.1	MA0140.1	0.496
MA0141.1	MA0141.1	0.357
MA0142.1	MA0142.1	0.164
MA0143.1	MA0143.1	0.328
MA0144.1	MA0144.1	0.0723
MA0145.1	MA0145.1	0.00909
MA0146.1	MA0146.1	0.399
MA0147.1	MA0147.1	0.126
MA0148.1	MA0148.1	0.109
MA0149.1	MA0149.1	0.981
MA0150.1	MA0150.1	0.0163
MA0152.1	MA0152.1	0.963
MA0153.1	MA0153.1	2.77106e-42
MA0154.1	MA0154.1	0.46
MA0155.1	MA0155.1	0.309
MA0156.1	MA0156.1	0.343
MA0157.1	MA0157.1	0.548
MA0159.1	MA0159.1	0.977
MA0160.1	MA0160.1	0.256
MA0162.1	MA0162.1	0.479
MA0163.1	MA0163.1	0.0153
MA0164.1	MA0164.1	0.891
MA0258.1	MA0258.1	0.993
MA0259.1	MA0259.1	0.203

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10729

Novel motif	Logo	P-value
1	1	0.562
10	10	0.332
100	100	0.659
101	101	0.151
102	102	0.954
103	103	0.588
104	104	0.579
105	105	0.473
106	106	0.225
107	107	0.701
108	108	0.825
109	109	0.3
11	11	0.669
110	110	0.246
111	111	0.314
112	112	0.378
113	113	0.146
114	114	0.301
115	115	0.214
116	116	0.93
117	117	0.302
118	118	0.313
119	119	0.471
12	12	0.975
120	120	0.956
121	121	0.931
122	122	0.204
123	123	0.00201
124	124	0.988
125	125	0.564
126	126	0.161
127	127	0.687
128	128	0.446
129	129	0.0945
13	13	0.0652
130	130	0.183
131	131	0.479
132	132	0.106
133	133	0.409
134	134	0.699
135	135	0.236
136	136	0.108
137	137	0.307
138	138	0.653
139	139	0.103
14	14	0.22
140	140	0.121
141	141	0.923
142	142	0.811
143	143	0.804
144	144	0.972
145	145	0.946
146	146	0.396
147	147	0.58
148	148	0.304
149	149	0.258
15	15	0.477
150	150	0.603
151	151	0.504
152	152	0.962
153	153	0.192
154	154	0.781
155	155	0.491
156	156	0.267
157	157	0.959
158	158	0.477
159	159	0.888
16	16	0.571
160	160	0.383
161	161	0.315
162	162	0.513
163	163	0.0407
164	164	0.0977
165	165	0.689
166	166	0.664
167	167	0.76
168	168	0.788
169	169	0.103
17	17	0.442
18	18	0.143
19	19	0.464
2	2	0.25
20	20	0.435
21	21	0.284
22	22	0.516
23	23	0.558
24	24	0.168
25	25	0.614
26	26	0.42
27	27	0.992
28	28	0.325
29	29	0.868
3	3	0.936
30	30	0.0114
31	31	0.801
32	32	0.00335
33	33	0.711
34	34	0.455
35	35	0.0149
36	36	0.183
37	37	0.837
38	38	0.922
39	39	0.607
4	4	0.275
40	40	0.829
41	41	0.155
42	42	0.801
43	43	0.951
44	44	0.705
45	45	0.124
46	46	0.902
47	47	0.435
48	48	0.775
49	49	0.12
5	5	0.826
50	50	0.736
51	51	0.788
52	52	0.6
53	53	0.671
54	54	0.639
55	55	0.432
56	56	0.172
57	57	0.298
58	58	0.957
59	59	0.489
6	6	0.873
60	60	0.778
61	61	0.782
62	62	0.456
63	63	0.7
64	64	0.912
65	65	0.592
66	66	0.00456
67	67	0.471
68	68	0.743
69	69	0.594
7	7	0.28
70	70	0.653
71	71	0.285
72	72	0.907
73	73	0.472
74	74	0.346
75	75	0.369
76	76	0.558
77	77	0.0557
78	78	0.448
79	79	0.0338
8	8	0.865
80	80	0.362
81	81	0.318
82	82	0.8
83	83	0.331
84	84	0.252
85	85	0.108
86	86	0.607
87	87	0.226
88	88	0.278
89	89	0.58
9	9	0.535
90	90	0.389
91	91	0.731
92	92	0.847
93	93	0.553
94	94	0.374
95	95	0.13
96	96	0.254
97	97	0.548
98	98	0.512
99	99	0.497

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10729

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102403 OS-RC-2 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100067 (kidney cell line sample)
0101120 (epithelial cell line sample)
0103192 (renal cancer cell line sample)
0100383 (renal cell carcinoma cell line sample)
0102403 (OS-RC-2 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)

@@ Line 1: / Line 1: @@
 {{f5samples
-|id=FF:10411-106B6
+|DRA_sample_Accession=CAGE@SAMD00005489
-|name=renal cell carcinoma cell line:OS-RC-2
+|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005489
-|sample_id=10411
+|HumanCAGEScanFiles=NCig10053;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/renal%2520cell%2520carcinoma%2520cell%2520line%253aOS-RC-2.NCig10053.10411-106B6.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/renal%2520cell%2520carcinoma%2520cell%2520line%253aOS-RC-2.NCig10053.10411-106B6.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/renal%2520cell%2520carcinoma%2520cell%2520line%253aOS-RC-2.NCig10053.10411-106B6.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/renal%2520cell%2520carcinoma%2520cell%2520line%253aOS-RC-2.NCig10053.10411-106B6.hg19.GCTATA.pairs.bed.gz
-|rna_tube_id=106B6
+|accession_numbers=CAGE;DRX007990;DRR008862;DRZ000287;DRZ001672;DRZ011637;DRZ013022
-|rna_box=106
+|accession_numbers_RNASeq=RNA-Seq;DRX057119;DRR062878;DRZ007954
-|rna_position=B6
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
-|sample_cell_lot=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518
-|sample_cell_catalog=RCB0735
+|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305
-|sample_company=RIKEN Bioresource centre
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100067,FF:0101120,FF:0103192,FF:0100383,FF:0102403
-|rna_lot_number=
+|comment=
-|rna_catalog_number=
+|created_by=
-|sample_species=Human (Homo sapiens)
+|creation_date=
-|sample_strain=
+|data_phase=2
-|sample_dev_stage=
+|datafreeze_phase=2
-|sample_tissue=kidney
+|def=
-|sample_donor(cell lot)=
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-|sample_sex=male
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-|sample_age=unknown
-|sample_ethnicity=J
-|rna_rin=
-|rna_od260/230=1.28
-|rna_od260/280=2.08
-|sample_cell_type=unclassifiable
-|sample_cell_line=OS-RC-2
-|sample_collaboration=Yukio Nakamura (RIKEN BRC)
-|sample_experimental_condition=
-|sample_disease=renal cell carcinoma
-|rna_sample_type=total RNA
-|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
-|rna_weight_ug=18.856
-|rna_concentration=0.75424
-|sample_note=machine failed, remainder reloaded, low amount
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-|profile_cagescan=NCig10053,,,
-|profile_srnaseq=,,,
-|profile_rnaseq=,,,
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000480,UBERON:0000489,UBERON:0000916,UBERON:0000922,UBERON:0001008,UBERON:0001062,UBERON:0002100,UBERON:0002113,UBERON:0002417,UBERON:0003103,UBERON:0005095,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005423,UBERON:0006554,UBERON:0007687
-|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4,DOID:7
-|sample_description=
 |fonse_cell_line=FF:0100067,FF:0101120
 |fonse_cell_line_closure=FF:0100067,FF:0101120
@@ Line 66: / Line 43: @@
 |fonse_treatment=
 |fonse_treatment_closure=
-|top_motifs=
-|comment=
-|created_by=
-|creation_date=
-|def=
 |has_quality=
-|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0102403
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aOS-RC-2.CNhs10729.10411-106B6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aOS-RC-2.CNhs10729.10411-106B6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aOS-RC-2.CNhs10729.10411-106B6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aOS-RC-2.CNhs10729.10411-106B6.hg38.nobarcode.ctss.bed.gz
+|id=FF:10411-106B6
+|is_a=EFO:0002091;;FF:0000210;;FF:0102403
+|is_obsolete=
+|library_id=CNhs10729
+|library_id_phase_based=2:CNhs10729
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10411
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10411
+|name=renal cell carcinoma cell line:OS-RC-2
 |namespace=FANTOM5
 |part_of=
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+|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
+|rna_lot_number=
+|rna_od260/230=1.28
+|rna_od260/280=2.08
+|rna_position=B6
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+|rna_sample_type=total RNA
+|rna_tube_id=106B6
+|rna_weight_ug=18.856
+|rnaseq_library_id=RDhi10062
+|sample_age=unknown
+|sample_category=cell lines
+|sample_cell_catalog=RCB0735
+|sample_cell_line=OS-RC-2
+|sample_cell_lot=
+|sample_cell_type=unclassifiable
+|sample_collaboration=Yukio Nakamura (RIKEN BRC)
+|sample_company=RIKEN Bioresource centre
+|sample_description=
+|sample_dev_stage=
+|sample_disease=renal cell carcinoma
+|sample_donor(cell lot)=
+|sample_ethnicity=J
+|sample_experimental_condition=
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process;3.99007077458757e-65!GO:0005739;mitochondrion;5.97896104409726e-65!GO:0003723;RNA binding;1.28576324364036e-64!GO:0044428;nuclear part;2.13894125483749e-63!GO:0005634;nucleus;4.41429420098825e-61!GO:0031090;organelle membrane;2.76003511565243e-52!GO:0005840;ribosome;3.81915479168769e-46!GO:0019538;protein metabolic process;9.21160765152159e-46!GO:0016043;cellular component organization and biogenesis;9.24116093095413e-45!GO:0043234;protein complex;9.61660838995202e-45!GO:0006412;translation;6.86063788569675e-44!GO:0006396;RNA processing;5.51944151144905e-43!GO:0044429;mitochondrial part;5.95050938050162e-43!GO:0015031;protein transport;2.36107236735233e-42!GO:0033036;macromolecule localization;2.36107236735233e-42!GO:0003735;structural constituent of ribosome;1.04597169271642e-39!GO:0044260;cellular macromolecule metabolic process;1.88520446623564e-39!GO:0044267;cellular protein metabolic process;3.8322230473259e-39!GO:0045184;establishment of protein localization;5.10461060824428e-39!GO:0008104;protein localization;9.66936609710165e-39!GO:0031967;organelle envelope;5.34703889311886e-38!GO:0009058;biosynthetic process;5.39978573793174e-38!GO:0031975;envelope;1.28645899676477e-37!GO:0031981;nuclear lumen;2.13300504271461e-36!GO:0044249;cellular biosynthetic process;2.22963596971231e-36!GO:0046907;intracellular transport;1.32222443681756e-35!GO:0016071;mRNA metabolic process;2.58503794698153e-35!GO:0009059;macromolecule biosynthetic process;8.40918484689512e-35!GO:0005829;cytosol;1.0362964194653e-34!GO:0008380;RNA splicing;5.13653179178714e-34!GO:0033279;ribosomal subunit;1.21847182892862e-33!GO:0043228;non-membrane-bound organelle;1.03935476907566e-32!GO:0043232;intracellular non-membrane-bound organelle;1.03935476907566e-32!GO:0043283;biopolymer metabolic process;3.58153878968463e-32!GO:0006397;mRNA processing;8.25966063234295e-31!GO:0065003;macromolecular complex assembly;4.70326593608269e-30!GO:0006886;intracellular protein transport;1.28598037841901e-28!GO:0006996;organelle organization and biogenesis;2.35979050710841e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.17588186349214e-28!GO:0005740;mitochondrial envelope;1.30329606354657e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.40240375427308e-26!GO:0022607;cellular component assembly;4.38152592872807e-26!GO:0007049;cell cycle;1.5681873846283e-25!GO:0031966;mitochondrial membrane;1.62209720413669e-25!GO:0010467;gene expression;2.86321914518441e-25!GO:0006259;DNA metabolic process;3.46644542954116e-25!GO:0005681;spliceosome;3.60796796700619e-25!GO:0019866;organelle inner membrane;4.09554236957205e-25!GO:0012505;endomembrane system;5.72675853595e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.32779161425853e-23!GO:0005743;mitochondrial inner membrane;2.07496180831012e-23!GO:0051649;establishment of cellular localization;2.09221095491827e-23!GO:0005783;endoplasmic reticulum;5.45505892785415e-23!GO:0051641;cellular localization;6.34478604189888e-23!GO:0000166;nucleotide binding;8.46586773651122e-23!GO:0005654;nucleoplasm;9.74882062711451e-22!GO:0016462;pyrophosphatase activity;5.11585334370182e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.07747496947336e-21!GO:0017111;nucleoside-triphosphatase activity;6.47378504711903e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;8.74494033936481e-21!GO:0044445;cytosolic part;5.18973923626084e-20!GO:0031980;mitochondrial lumen;9.40266773578804e-20!GO:0005759;mitochondrial matrix;9.40266773578804e-20!GO:0006119;oxidative phosphorylation;1.50208836859808e-19!GO:0006457;protein folding;2.03740323580571e-19!GO:0006974;response to DNA damage stimulus;4.28557417407981e-19!GO:0022402;cell cycle process;5.13473214265129e-19!GO:0000278;mitotic cell cycle;5.58581300112885e-19!GO:0015935;small ribosomal subunit;6.91293403661897e-19!GO:0022618;protein-RNA complex assembly;7.20482454271403e-19!GO:0044432;endoplasmic reticulum part;4.07525583021412e-18!GO:0005794;Golgi apparatus;4.39633424361378e-18!GO:0032553;ribonucleotide binding;3.11303205030269e-17!GO:0032555;purine ribonucleotide binding;3.11303205030269e-17!GO:0048770;pigment granule;4.43760540922821e-17!GO:0042470;melanosome;4.43760540922821e-17!GO:0044451;nucleoplasm part;4.92470439772191e-17!GO:0044455;mitochondrial membrane part;6.96337756683882e-17!GO:0017076;purine nucleotide binding;8.2037852111448e-17!GO:0044265;cellular macromolecule catabolic process;8.98626504004714e-17!GO:0016874;ligase activity;3.10213523472934e-16!GO:0005730;nucleolus;3.69316131687142e-16!GO:0044248;cellular catabolic process;5.04430019024956e-16!GO:0015934;large ribosomal subunit;6.6577308230601e-16!GO:0051186;cofactor metabolic process;7.72232808587491e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.02036989684824e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.31913105459416e-15!GO:0043285;biopolymer catabolic process;2.166602124663e-15!GO:0048193;Golgi vesicle transport;2.46902280693891e-15!GO:0009057;macromolecule catabolic process;6.28748255771273e-15!GO:0012501;programmed cell death;7.76069560758013e-15!GO:0000087;M phase of mitotic cell cycle;8.14281694796057e-15!GO:0006915;apoptosis;9.07297865190874e-15!GO:0006281;DNA repair;1.28333569674546e-14!GO:0005761;mitochondrial ribosome;1.37456184948767e-14!GO:0000313;organellar ribosome;1.37456184948767e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.43082523624508e-14!GO:0007067;mitosis;1.69320748125768e-14!GO:0019941;modification-dependent protein catabolic process;2.62460571871527e-14!GO:0043632;modification-dependent macromolecule catabolic process;2.62460571871527e-14!GO:0005746;mitochondrial respiratory chain;2.80283486007452e-14!GO:0022403;cell cycle phase;2.92805455151923e-14!GO:0044257;cellular protein catabolic process;3.41470112535303e-14!GO:0006512;ubiquitin cycle;5.45433097374339e-14!GO:0005524;ATP binding;5.49911055544744e-14!GO:0006511;ubiquitin-dependent protein catabolic process;5.95349527883558e-14!GO:0016192;vesicle-mediated transport;6.28991503022193e-14!GO:0050136;NADH dehydrogenase (quinone) activity;6.28991503022193e-14!GO:0003954;NADH dehydrogenase activity;6.28991503022193e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.28991503022193e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.52860893086983e-14!GO:0032559;adenyl ribonucleotide binding;8.13531739781874e-14!GO:0051082;unfolded protein binding;9.00374567587487e-14!GO:0008134;transcription factor binding;9.00374567587487e-14!GO:0009719;response to endogenous stimulus;9.00374567587487e-14!GO:0008135;translation factor activity, nucleic acid binding;1.08182866713285e-13!GO:0006605;protein targeting;1.08182866713285e-13!GO:0051301;cell division;1.09340079817896e-13!GO:0003676;nucleic acid binding;1.10579351408114e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;2.01076597335954e-13!GO:0000375;RNA splicing, via transesterification reactions;2.01076597335954e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.01076597335954e-13!GO:0005789;endoplasmic reticulum membrane;2.32211127566218e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.32211127566218e-13!GO:0030554;adenyl nucleotide binding;2.66807376386029e-13!GO:0005694;chromosome;3.27246114513042e-13!GO:0008219;cell death;4.3194977947565e-13!GO:0016265;death;4.3194977947565e-13!GO:0030163;protein catabolic process;5.34982417582072e-13!GO:0006732;coenzyme metabolic process;5.46578197288858e-13!GO:0006260;DNA replication;1.08772151131378e-12!GO:0043412;biopolymer modification;1.77018617950607e-12!GO:0044427;chromosomal part;2.55000057594008e-12!GO:0005635;nuclear envelope;3.77807496113592e-12!GO:0030964;NADH dehydrogenase complex (quinone);4.13590466639745e-12!GO:0045271;respiratory chain complex I;4.13590466639745e-12!GO:0005747;mitochondrial respiratory chain complex I;4.13590466639745e-12!GO:0000279;M phase;4.79341714763461e-12!GO:0042775;organelle ATP synthesis coupled electron transport;5.40480440333037e-12!GO:0042773;ATP synthesis coupled electron transport;5.40480440333037e-12!GO:0016887;ATPase activity;6.21614701852673e-12!GO:0042623;ATPase activity, coupled;6.66067591417768e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.65216173277443e-12!GO:0006413;translational initiation;1.95396685755507e-11!GO:0009055;electron carrier activity;3.72661567314027e-11!GO:0003743;translation initiation factor activity;6.43186254793101e-11!GO:0042254;ribosome biogenesis and assembly;7.78798087653136e-11!GO:0006913;nucleocytoplasmic transport;9.0272493510774e-11!GO:0006464;protein modification process;9.72498461303458e-11!GO:0031965;nuclear membrane;9.77912078707263e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.90583753878562e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.14029608502129e-10!GO:0044453;nuclear membrane part;1.54481413432258e-10!GO:0006461;protein complex assembly;2.05880106636979e-10!GO:0051169;nuclear transport;2.26149513416854e-10!GO:0000074;regulation of progression through cell cycle;2.52979586729059e-10!GO:0006446;regulation of translational initiation;2.77019581269983e-10!GO:0009056;catabolic process;3.16579049672448e-10!GO:0051726;regulation of cell cycle;3.95213352432424e-10!GO:0042981;regulation of apoptosis;4.3037295128751e-10!GO:0005793;ER-Golgi intermediate compartment;4.87210817283461e-10!GO:0043067;regulation of programmed cell death;5.63590565891854e-10!GO:0016604;nuclear body;6.57039777935764e-10!GO:0004386;helicase activity;1.28881829816083e-09!GO:0003712;transcription cofactor activity;2.63360162789068e-09!GO:0016070;RNA metabolic process;2.79575410301292e-09!GO:0008639;small protein conjugating enzyme activity;3.60856403431534e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.6738179722402e-09!GO:0004842;ubiquitin-protein ligase activity;5.60051069748384e-09!GO:0019787;small conjugating protein ligase activity;7.01289425040336e-09!GO:0043687;post-translational protein modification;8.02942562433535e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.50487069880632e-09!GO:0009259;ribonucleotide metabolic process;8.99452013632443e-09!GO:0016740;transferase activity;1.04433204189242e-08!GO:0006399;tRNA metabolic process;1.49499270538737e-08!GO:0051276;chromosome organization and biogenesis;1.73196193544248e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.87886165829878e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.93927388427546e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.38463374689087e-08!GO:0006163;purine nucleotide metabolic process;2.5414536291583e-08!GO:0044431;Golgi apparatus part;3.21627373881404e-08!GO:0008565;protein transporter activity;3.61595782669388e-08!GO:0005643;nuclear pore;3.89838683992295e-08!GO:0009150;purine ribonucleotide metabolic process;4.12295698687394e-08!GO:0008026;ATP-dependent helicase activity;4.26916336609096e-08!GO:0007005;mitochondrion organization and biogenesis;4.42946558258418e-08!GO:0015630;microtubule cytoskeleton;4.70806189959441e-08!GO:0009060;aerobic respiration;5.0813547534987e-08!GO:0030532;small nuclear ribonucleoprotein complex;5.76224779029948e-08!GO:0043566;structure-specific DNA binding;6.9746390728579e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.75433623469346e-08!GO:0017038;protein import;7.79326558770812e-08!GO:0030120;vesicle coat;8.1084283055312e-08!GO:0030662;coated vesicle membrane;8.1084283055312e-08!GO:0006164;purine nucleotide biosynthetic process;8.46411778210656e-08!GO:0009260;ribonucleotide biosynthetic process;9.31379848697638e-08!GO:0005768;endosome;9.53630662788182e-08!GO:0016881;acid-amino acid ligase activity;1.11038042992284e-07!GO:0006403;RNA localization;1.25278047507653e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.30842396136203e-07!GO:0065002;intracellular protein transport across a membrane;1.35875309284648e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.441031447454e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.58573649963322e-07!GO:0048475;coated membrane;1.68187804183647e-07!GO:0030117;membrane coat;1.68187804183647e-07!GO:0016607;nuclear speck;1.71028392738197e-07!GO:0051188;cofactor biosynthetic process;1.7166730055017e-07!GO:0003697;single-stranded DNA binding;1.77325660043543e-07!GO:0003924;GTPase activity;1.79617272757187e-07!GO:0016491;oxidoreductase activity;1.80754115828934e-07!GO:0043069;negative regulation of programmed cell death;1.86494144550555e-07!GO:0045333;cellular respiration;1.89106964248752e-07!GO:0050657;nucleic acid transport;2.29309709538498e-07!GO:0051236;establishment of RNA localization;2.29309709538498e-07!GO:0050658;RNA transport;2.29309709538498e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.76979496326505e-07!GO:0004812;aminoacyl-tRNA ligase activity;2.76979496326505e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.76979496326505e-07!GO:0043066;negative regulation of apoptosis;2.91454815520682e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.06061855923989e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.20254788636476e-07!GO:0016787;hydrolase activity;3.48556379338306e-07!GO:0043038;amino acid activation;3.94031549692746e-07!GO:0006418;tRNA aminoacylation for protein translation;3.94031549692746e-07!GO:0043039;tRNA aminoacylation;3.94031549692746e-07!GO:0009141;nucleoside triphosphate metabolic process;4.03158384267287e-07!GO:0015986;ATP synthesis coupled proton transport;4.68060921357969e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.68060921357969e-07!GO:0005839;proteasome core complex (sensu Eukaryota);4.70624233641885e-07!GO:0048523;negative regulation of cellular process;4.79682557777106e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.81123675537412e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.81123675537412e-07!GO:0006366;transcription from RNA polymerase II promoter;4.96156866274468e-07!GO:0006099;tricarboxylic acid cycle;5.67173404596774e-07!GO:0046356;acetyl-CoA catabolic process;5.67173404596774e-07!GO:0019829;cation-transporting ATPase activity;6.35234908637896e-07!GO:0009142;nucleoside triphosphate biosynthetic process;7.83239673060363e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.83239673060363e-07!GO:0051187;cofactor catabolic process;8.28097296261384e-07!GO:0046930;pore complex;9.90532191918748e-07!GO:0006084;acetyl-CoA metabolic process;1.04168477243918e-06!GO:0006364;rRNA processing;1.11242318689332e-06!GO:0009117;nucleotide metabolic process;1.13945420083106e-06!GO:0016072;rRNA metabolic process;1.19994815412492e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.25357846813585e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.25357846813585e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;1.27088915369668e-06!GO:0000139;Golgi membrane;1.56213912337365e-06!GO:0000245;spliceosome assembly;1.56213912337365e-06!GO:0004298;threonine endopeptidase activity;1.66920449456205e-06!GO:0009108;coenzyme biosynthetic process;1.81126282988668e-06!GO:0005788;endoplasmic reticulum lumen;1.94074615672506e-06!GO:0000775;chromosome, pericentric region;2.15503470956882e-06!GO:0016779;nucleotidyltransferase activity;2.35731580042769e-06!GO:0005819;spindle;2.39419846880488e-06!GO:0046034;ATP metabolic process;2.44923935771371e-06!GO:0006950;response to stress;2.56131501052634e-06!GO:0005815;microtubule organizing center;2.62387690952142e-06!GO:0003714;transcription corepressor activity;2.62387690952142e-06!GO:0006323;DNA packaging;2.82239944263034e-06!GO:0031988;membrane-bound vesicle;2.92244762191759e-06!GO:0051246;regulation of protein metabolic process;3.01345282555077e-06!GO:0005770;late endosome;3.14428505866824e-06!GO:0000785;chromatin;3.44160887204429e-06!GO:0006916;anti-apoptosis;3.6807105990639e-06!GO:0051170;nuclear import;3.76689242374974e-06!GO:0005813;centrosome;4.04164993639926e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.21788157915751e-06!GO:0045259;proton-transporting ATP synthase complex;4.65067882799088e-06!GO:0009109;coenzyme catabolic process;4.67803113181036e-06!GO:0006613;cotranslational protein targeting to membrane;5.31277806197731e-06!GO:0006754;ATP biosynthetic process;5.40148433103636e-06!GO:0006753;nucleoside phosphate metabolic process;5.40148433103636e-06!GO:0031982;vesicle;5.49929293452244e-06!GO:0044440;endosomal part;5.79954200751461e-06!GO:0010008;endosome membrane;5.79954200751461e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.25367503155514e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.32702232255243e-06!GO:0048519;negative regulation of biological process;6.91464374207666e-06!GO:0005525;GTP binding;7.76298408954192e-06!GO:0006606;protein import into nucleus;8.43625760026195e-06!GO:0031410;cytoplasmic vesicle;8.45892716229572e-06!GO:0051028;mRNA transport;9.17540669283014e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.62410623468145e-06!GO:0043623;cellular protein complex assembly;1.14227910052196e-05!GO:0007243;protein kinase cascade;1.35897605106235e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.35897605106235e-05!GO:0032446;protein modification by small protein conjugation;1.49053138812699e-05!GO:0006752;group transfer coenzyme metabolic process;1.62586789383102e-05!GO:0065004;protein-DNA complex assembly;1.77210782694303e-05!GO:0016567;protein ubiquitination;1.90480203093576e-05!GO:0006793;phosphorus metabolic process;1.99745138687799e-05!GO:0006796;phosphate metabolic process;1.99745138687799e-05!GO:0007051;spindle organization and biogenesis;2.0326698735903e-05!GO:0048522;positive regulation of cellular process;2.22344945348917e-05!GO:0031968;organelle outer membrane;2.22344945348917e-05!GO:0051329;interphase of mitotic cell cycle;2.46347753192158e-05!GO:0005762;mitochondrial large ribosomal subunit;2.56921929028572e-05!GO:0000315;organellar large ribosomal subunit;2.56921929028572e-05!GO:0019843;rRNA binding;2.6221817186224e-05!GO:0003690;double-stranded DNA binding;2.99374174891449e-05!GO:0030867;rough endoplasmic reticulum membrane;3.18483066257456e-05!GO:0006333;chromatin assembly or disassembly;3.61129267357578e-05!GO:0019867;outer membrane;3.67821725255308e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.88431692286718e-05!GO:0016564;transcription repressor activity;4.07813807751207e-05!GO:0051325;interphase;4.41776955393388e-05!GO:0006261;DNA-dependent DNA replication;5.07570509140322e-05!GO:0043021;ribonucleoprotein binding;5.084475786885e-05!GO:0016310;phosphorylation;5.19282796116668e-05!GO:0019899;enzyme binding;5.28351689955828e-05!GO:0005798;Golgi-associated vesicle;5.99599202275826e-05!GO:0007010;cytoskeleton organization and biogenesis;6.45087981796241e-05!GO:0006612;protein targeting to membrane;6.62194431708203e-05!GO:0032561;guanyl ribonucleotide binding;7.42181578086813e-05!GO:0019001;guanyl nucleotide binding;7.42181578086813e-05!GO:0000151;ubiquitin ligase complex;7.46099460782107e-05!GO:0005667;transcription factor complex;8.35298975934157e-05!GO:0050794;regulation of cellular process;8.40401307327272e-05!GO:0008654;phospholipid biosynthetic process;9.32725336474811e-05!GO:0048471;perinuclear region of cytoplasm;0.000100356175868893!GO:0045454;cell redox homeostasis;0.000100704718809443!GO:0033116;ER-Golgi intermediate compartment membrane;0.000101049223690173!GO:0019752;carboxylic acid metabolic process;0.00010793527824016!GO:0045786;negative regulation of progression through cell cycle;0.000110420882298064!GO:0051789;response to protein stimulus;0.000110570069185602!GO:0006986;response to unfolded protein;0.000110570069185602!GO:0000075;cell cycle checkpoint;0.000115346486562148!GO:0006082;organic acid metabolic process;0.000118163072556883!GO:0031252;leading edge;0.000120224220335778!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000132212208493955!GO:0016568;chromatin modification;0.000132698724065376!GO:0005741;mitochondrial outer membrane;0.000139903433642326!GO:0016853;isomerase activity;0.000141808281371095!GO:0030036;actin cytoskeleton organization and biogenesis;0.000146415830165682!GO:0005657;replication fork;0.000161847369311684!GO:0007088;regulation of mitosis;0.000165364015564087!GO:0006891;intra-Golgi vesicle-mediated transport;0.000165964957164203!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000175777061304437!GO:0003724;RNA helicase activity;0.000177272991560605!GO:0006091;generation of precursor metabolites and energy;0.00018217170946399!GO:0016859;cis-trans isomerase activity;0.000184253770025674!GO:0006302;double-strand break repair;0.000193994982494219!GO:0005773;vacuole;0.000193994982494219!GO:0000314;organellar small ribosomal subunit;0.000196483271178799!GO:0005763;mitochondrial small ribosomal subunit;0.000196483271178799!GO:0005905;coated pit;0.000198663461345031!GO:0051427;hormone receptor binding;0.000216177692425716!GO:0015980;energy derivation by oxidation of organic compounds;0.000239700947422488!GO:0031324;negative regulation of cellular metabolic process;0.000254148986802963!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000281009316888448!GO:0009165;nucleotide biosynthetic process;0.000281266291592034!GO:0003713;transcription coactivator activity;0.000295313574621335!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00030559042113181!GO:0015399;primary active transmembrane transporter activity;0.00030559042113181!GO:0005048;signal sequence binding;0.000322523586595379!GO:0000323;lytic vacuole;0.000343861847784734!GO:0005764;lysosome;0.000343861847784734!GO:0000776;kinetochore;0.000367244108711863!GO:0008094;DNA-dependent ATPase activity;0.000392467035524205!GO:0030133;transport vesicle;0.000413685589946453!GO:0043065;positive regulation of apoptosis;0.00041485126445721!GO:0035257;nuclear hormone receptor binding;0.000417856421617026!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000498989157237886!GO:0046489;phosphoinositide biosynthetic process;0.000543408282876101!GO:0003899;DNA-directed RNA polymerase activity;0.00059545946542964!GO:0043068;positive regulation of programmed cell death;0.000606516575495994!GO:0016563;transcription activator activity;0.000608430292102002!GO:0044262;cellular carbohydrate metabolic process;0.00062711399189899!GO:0042802;identical protein binding;0.000736798980495436!GO:0008092;cytoskeletal protein binding;0.000757969595362536!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000766249520045707!GO:0046474;glycerophospholipid biosynthetic process;0.000769677940220284!GO:0009967;positive regulation of signal transduction;0.000784887330182334!GO:0005885;Arp2/3 protein complex;0.000817288693844781!GO:0009892;negative regulation of metabolic process;0.000817288693844781!GO:0051052;regulation of DNA metabolic process;0.0008328707016474!GO:0051920;peroxiredoxin activity;0.000844913581908275!GO:0030029;actin filament-based process;0.000991837702478936!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000996717356443451!GO:0006402;mRNA catabolic process;0.001043313811951!GO:0051168;nuclear export;0.00111237643404452!GO:0016044;membrane organization and biogenesis;0.00121991004040605!GO:0008250;oligosaccharyl transferase complex;0.00128311512301418!GO:0008361;regulation of cell size;0.00128405137243854!GO:0016049;cell growth;0.00132306660503207!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00138611778798416!GO:0004576;oligosaccharyl transferase activity;0.00138611778798416!GO:0030658;transport vesicle membrane;0.00153578644286583!GO:0008186;RNA-dependent ATPase activity;0.00162291590446242!GO:0003729;mRNA binding;0.00163136098720612!GO:0048500;signal recognition particle;0.00168408211873714!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00177325924054966!GO:0001666;response to hypoxia;0.00178187989869258!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00178295073733304!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00187110974003852!GO:0005769;early endosome;0.00200039257724165!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0021264681542243!GO:0005874;microtubule;0.00215082145690411!GO:0008632;apoptotic program;0.0022537704252954!GO:0007093;mitotic cell cycle checkpoint;0.0022537704252954!GO:0005684;U2-dependent spliceosome;0.00229891297203307!GO:0031072;heat shock protein binding;0.00233663252283878!GO:0006334;nucleosome assembly;0.00237606703829513!GO:0007006;mitochondrial membrane organization and biogenesis;0.00252403978066424!GO:0008022;protein C-terminus binding;0.00253675978285405!GO:0006839;mitochondrial transport;0.00253843398766157!GO:0030127;COPII vesicle coat;0.00259920403784!GO:0012507;ER to Golgi transport vesicle membrane;0.00259920403784!GO:0006626;protein targeting to mitochondrion;0.00269536994796065!GO:0030134;ER to Golgi transport vesicle;0.00274927461658295!GO:0030663;COPI coated vesicle membrane;0.00276499322066063!GO:0030126;COPI vesicle coat;0.00276499322066063!GO:0045045;secretory pathway;0.00287913404598427!GO:0006310;DNA recombination;0.00292248675545639!GO:0006401;RNA catabolic process;0.0030414816984558!GO:0030659;cytoplasmic vesicle membrane;0.00308680961023464!GO:0030176;integral to endoplasmic reticulum membrane;0.00319320705140915!GO:0035258;steroid hormone receptor binding;0.0032390878869053!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00327942503556104!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00327942503556104!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00327942503556104!GO:0046467;membrane lipid biosynthetic process;0.00333277055079158!GO:0030521;androgen receptor signaling pathway;0.00339355380341834!GO:0008637;apoptotic mitochondrial changes;0.00350411147452965!GO:0016741;transferase activity, transferring one-carbon groups;0.00350915465083105!GO:0030118;clathrin coat;0.00350915465083105!GO:0043492;ATPase activity, coupled to movement of substances;0.00350915465083105!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00357284185998603!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00362880811299618!GO:0048468;cell development;0.0036294670096435!GO:0030137;COPI-coated vesicle;0.00367252898160777!GO:0006383;transcription from RNA polymerase III promoter;0.00370936926782227!GO:0043681;protein import into mitochondrion;0.00371218130244968!GO:0008629;induction of apoptosis by intracellular signals;0.00371218130244968!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00375914146788664!GO:0008312;7S RNA binding;0.00377145890106606!GO:0016363;nuclear matrix;0.00379889498054471!GO:0004674;protein serine/threonine kinase activity;0.00380878049241623!GO:0046483;heterocycle metabolic process;0.00381882087608795!GO:0003682;chromatin binding;0.00383443085243283!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00395482862342609!GO:0045047;protein targeting to ER;0.00395482862342609!GO:0048518;positive regulation of biological process;0.00395898502105351!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00406400950987569!GO:0008168;methyltransferase activity;0.00407215180039048!GO:0004004;ATP-dependent RNA helicase activity;0.00407215180039048!GO:0031497;chromatin assembly;0.00429100517848377!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00433321192157168!GO:0016197;endosome transport;0.00443936784447613!GO:0005791;rough endoplasmic reticulum;0.00451681219661964!GO:0030132;clathrin coat of coated pit;0.00453735773062041!GO:0003684;damaged DNA binding;0.00462866741332733!GO:0030660;Golgi-associated vesicle membrane;0.0047375009830205!GO:0031902;late endosome membrane;0.00481470066646349!GO:0065009;regulation of a molecular function;0.00486860408051316!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00491000441050666!GO:0007052;mitotic spindle organization and biogenesis;0.00492493148601515!GO:0007264;small GTPase mediated signal transduction;0.00513239345303047!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00543364752593398!GO:0006695;cholesterol biosynthetic process;0.00563963806132797!GO:0001558;regulation of cell growth;0.00598399070491288!GO:0015631;tubulin binding;0.00609462715276606!GO:0001726;ruffle;0.00652846344413263!GO:0006506;GPI anchor biosynthetic process;0.0066215323011294!GO:0006520;amino acid metabolic process;0.0066215323011294!GO:0050662;coenzyme binding;0.00666822869396639!GO:0018196;peptidyl-asparagine modification;0.00666822869396639!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00666822869396639!GO:0006672;ceramide metabolic process;0.00680505643617116!GO:0030119;AP-type membrane coat adaptor complex;0.00682470495910513!GO:0008033;tRNA processing;0.00684696098308043!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00693927209072995!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00708510604538301!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00708510604538301!GO:0006414;translational elongation;0.007180773812493!GO:0005876;spindle microtubule;0.00733416083598159!GO:0044433;cytoplasmic vesicle part;0.00742524087674632!GO:0008610;lipid biosynthetic process;0.00786676703336939!GO:0006405;RNA export from nucleus;0.00802731249906385!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00806477897072147!GO:0048487;beta-tubulin binding;0.0080862697756361!GO:0043022;ribosome binding;0.00810837771579441!GO:0016272;prefoldin complex;0.00850703385756321!GO:0016408;C-acyltransferase activity;0.00884940827460391!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00888480351102638!GO:0016126;sterol biosynthetic process;0.00888480351102638!GO:0022415;viral reproductive process;0.00895471204720994!GO:0001836;release of cytochrome c from mitochondria;0.00896878060751248!GO:0006497;protein amino acid lipidation;0.00904724896973666!GO:0030880;RNA polymerase complex;0.00907742544792215!GO:0007040;lysosome organization and biogenesis;0.00907742544792215!GO:0012506;vesicle membrane;0.00907742544792215!GO:0008234;cysteine-type peptidase activity;0.00927217458975597!GO:0006917;induction of apoptosis;0.00938853524479792!GO:0006650;glycerophospholipid metabolic process;0.00939718119756912!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00978104313997409!GO:0003678;DNA helicase activity;0.00989342691546363!GO:0051087;chaperone binding;0.0105700590836759!GO:0006505;GPI anchor metabolic process;0.0105700590836759!GO:0004680;casein kinase activity;0.0106256100905809!GO:0042770;DNA damage response, signal transduction;0.0108516956291851!GO:0030131;clathrin adaptor complex;0.0109576776191737!GO:0046519;sphingoid metabolic process;0.0110976318260749!GO:0008139;nuclear localization sequence binding;0.0111829430571871!GO:0007017;microtubule-based process;0.0111994062589568!GO:0000059;protein import into nucleus, docking;0.0117011176171802!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0119928472059432!GO:0043488;regulation of mRNA stability;0.0119928472059432!GO:0043487;regulation of RNA stability;0.0119928472059432!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0124565193701067!GO:0017166;vinculin binding;0.0125235147969942!GO:0012502;induction of programmed cell death;0.0125569949421371!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0125959701271478!GO:0000082;G1/S transition of mitotic cell cycle;0.0126564389997282!GO:0032594;protein transport within lipid bilayer;0.0128189478626183!GO:0032907;transforming growth factor-beta3 production;0.0128189478626183!GO:0032596;protein transport into lipid raft;0.0128189478626183!GO:0032910;regulation of transforming growth factor-beta3 production;0.0128189478626183!GO:0032595;B cell receptor transport within lipid bilayer;0.0128189478626183!GO:0033606;chemokine receptor transport within lipid bilayer;0.0128189478626183!GO:0032600;chemokine receptor transport out of lipid raft;0.0128189478626183!GO:0032599;protein transport out of lipid raft;0.0128189478626183!GO:0032597;B cell receptor transport into lipid raft;0.0128189478626183!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0128189478626183!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0130102634155061!GO:0051098;regulation of binding;0.0130789695674736!GO:0022890;inorganic cation transmembrane transporter activity;0.0135640710129843!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0135640710129843!GO:0006767;water-soluble vitamin metabolic process;0.0135640710129843!GO:0006275;regulation of DNA replication;0.0138113667322862!GO:0031418;L-ascorbic acid binding;0.0138113667322862!GO:0005637;nuclear inner membrane;0.0138269822561434!GO:0051101;regulation of DNA binding;0.0139707970996649!GO:0006007;glucose catabolic process;0.0143232814807729!GO:0000209;protein polyubiquitination;0.0143823736883182!GO:0031124;mRNA 3'-end processing;0.0145064204566057!GO:0000086;G2/M transition of mitotic cell cycle;0.0145424275037588!GO:0030125;clathrin vesicle coat;0.0153404777156977!GO:0030665;clathrin coated vesicle membrane;0.0153404777156977!GO:0005832;chaperonin-containing T-complex;0.0154300414966749!GO:0009112;nucleobase metabolic process;0.0157138877805751!GO:0032508;DNA duplex unwinding;0.0158564647576391!GO:0032392;DNA geometric change;0.0158564647576391!GO:0000096;sulfur amino acid metabolic process;0.0158600401635768!GO:0051252;regulation of RNA metabolic process;0.0159206303155052!GO:0030384;phosphoinositide metabolic process;0.0163591889637581!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0164614085940639!GO:0015002;heme-copper terminal oxidase activity;0.0164614085940639!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0164614085940639!GO:0004129;cytochrome-c oxidase activity;0.0164614085940639!GO:0043414;biopolymer methylation;0.0166602598062173!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0166618773113911!GO:0000428;DNA-directed RNA polymerase complex;0.0166618773113911!GO:0006352;transcription initiation;0.0167338034450459!GO:0006376;mRNA splice site selection;0.016812629351613!GO:0000389;nuclear mRNA 3'-splice site recognition;0.016812629351613!GO:0016251;general RNA polymerase II transcription factor activity;0.0171866461450754!GO:0016584;nucleosome positioning;0.0172122893304339!GO:0004177;aminopeptidase activity;0.0173978533353101!GO:0032259;methylation;0.0175695276460098!GO:0006892;post-Golgi vesicle-mediated transport;0.0182696748369085!GO:0006740;NADPH regeneration;0.0182835580898292!GO:0006098;pentose-phosphate shunt;0.0182835580898292!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0183654778659959!GO:0043624;cellular protein complex disassembly;0.0183654778659959!GO:0006509;membrane protein ectodomain proteolysis;0.0183654778659959!GO:0033619;membrane protein proteolysis;0.0183654778659959!GO:0000922;spindle pole;0.01872060340168!GO:0006595;polyamine metabolic process;0.01872060340168!GO:0008283;cell proliferation;0.0187705034130927!GO:0006730;one-carbon compound metabolic process;0.0191306494732309!GO:0007034;vacuolar transport;0.0194868547913179!GO:0006268;DNA unwinding during replication;0.0196532389204733!GO:0007059;chromosome segregation;0.0197597144301452!GO:0050681;androgen receptor binding;0.0203613375459077!GO:0006378;mRNA polyadenylation;0.0207498642132883!GO:0044452;nucleolar part;0.0207537771682827!GO:0007033;vacuole organization and biogenesis;0.0211505334160133!GO:0006144;purine base metabolic process;0.0217703338890642!GO:0005996;monosaccharide metabolic process;0.0218404622442765!GO:0004300;enoyl-CoA hydratase activity;0.0226361401180949!GO:0019318;hexose metabolic process;0.0235037948657272!GO:0003923;GPI-anchor transamidase activity;0.0235037948657272!GO:0016255;attachment of GPI anchor to protein;0.0235037948657272!GO:0042765;GPI-anchor transamidase complex;0.0235037948657272!GO:0005869;dynactin complex;0.024041925585658!GO:0006749;glutathione metabolic process;0.0245236051780727!GO:0048037;cofactor binding;0.0249632906541609!GO:0043433;negative regulation of transcription factor activity;0.0250485501352282!GO:0032200;telomere organization and biogenesis;0.025103060161942!GO:0000723;telomere maintenance;0.025103060161942!GO:0042158;lipoprotein biosynthetic process;0.0251055737200714!GO:0050789;regulation of biological process;0.025128749189344!GO:0045893;positive regulation of transcription, DNA-dependent;0.025680104110067!GO:0032984;macromolecular complex disassembly;0.0257739807965642!GO:0008047;enzyme activator activity;0.0259418048364363!GO:0047485;protein N-terminus binding;0.0266514385923979!GO:0003756;protein disulfide isomerase activity;0.0266534404956847!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0266534404956847!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0266964072565414!GO:0000725;recombinational repair;0.0267773326163515!GO:0000724;double-strand break repair via homologous recombination;0.0267773326163515!GO:0032940;secretion by cell;0.0272727291138027!GO:0006769;nicotinamide metabolic process;0.0275709889779262!GO:0051539;4 iron, 4 sulfur cluster binding;0.0280573166916292!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0282683766466267!GO:0010257;NADH dehydrogenase complex assembly;0.0282683766466267!GO:0033108;mitochondrial respiratory chain complex assembly;0.0282683766466267!GO:0016481;negative regulation of transcription;0.0285932912647285!GO:0006979;response to oxidative stress;0.0293471037442774!GO:0006984;ER-nuclear signaling pathway;0.0293471037442774!GO:0051287;NAD binding;0.0297667853877189!GO:0043130;ubiquitin binding;0.0298951731307609!GO:0032182;small conjugating protein binding;0.0298951731307609!GO:0003746;translation elongation factor activity;0.0298951731307609!GO:0043284;biopolymer biosynthetic process;0.0298951731307609!GO:0046983;protein dimerization activity;0.0300671867996763!GO:0033239;negative regulation of amine metabolic process;0.030185538414363!GO:0045763;negative regulation of amino acid metabolic process;0.030185538414363!GO:0001933;negative regulation of protein amino acid phosphorylation;0.030185538414363!GO:0031570;DNA integrity checkpoint;0.030185538414363!GO:0000049;tRNA binding;0.0319085658725663!GO:0004197;cysteine-type endopeptidase activity;0.0321791533259294!GO:0051270;regulation of cell motility;0.0322983877704896!GO:0000781;chromosome, telomeric region;0.0327279391532131!GO:0007021;tubulin folding;0.0342421286808772!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0346658135131051!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0346658135131051!GO:0006487;protein amino acid N-linked glycosylation;0.0347223568207423!GO:0005784;translocon complex;0.0355040367081665!GO:0006284;base-excision repair;0.0355040367081665!GO:0032906;transforming growth factor-beta2 production;0.035698793613192!GO:0032909;regulation of transforming growth factor-beta2 production;0.035698793613192!GO:0030518;steroid hormone receptor signaling pathway;0.0366112187240118!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0366995106496858!GO:0007242;intracellular signaling cascade;0.036774391406269!GO:0019375;galactolipid biosynthetic process;0.0369091279743937!GO:0006682;galactosylceramide biosynthetic process;0.0369091279743937!GO:0030508;thiol-disulfide exchange intermediate activity;0.0371071232741658!GO:0031543;peptidyl-proline dioxygenase activity;0.0371774108029615!GO:0006807;nitrogen compound metabolic process;0.0372770306712646!GO:0000062;acyl-CoA binding;0.037356482804605!GO:0008180;signalosome;0.037356482804605!GO:0006518;peptide metabolic process;0.0374090424669277!GO:0031529;ruffle organization and biogenesis;0.0382349081981498!GO:0006417;regulation of translation;0.03850762264526!GO:0051128;regulation of cellular component organization and biogenesis;0.03850762264526!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.038771269915532!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0388548162162146!GO:0006778;porphyrin metabolic process;0.0388548162162146!GO:0033013;tetrapyrrole metabolic process;0.0388548162162146!GO:0004527;exonuclease activity;0.0391963637886215!GO:0006289;nucleotide-excision repair;0.0393618527423866!GO:0007030;Golgi organization and biogenesis;0.0405426184466322!GO:0051053;negative regulation of DNA metabolic process;0.0405426184466322!GO:0004003;ATP-dependent DNA helicase activity;0.0406378914909458!GO:0000339;RNA cap binding;0.0406974885612752!GO:0008017;microtubule binding;0.0410745903304002!GO:0051881;regulation of mitochondrial membrane potential;0.0424717664062642!GO:0031625;ubiquitin protein ligase binding;0.0431572690505232!GO:0045767;regulation of anti-apoptosis;0.0434911478874603!GO:0004682;protein kinase CK2 activity;0.0448256538094968!GO:0006118;electron transport;0.0448256538094968!GO:0043241;protein complex disassembly;0.045944775676002!GO:0043281;regulation of caspase activity;0.0465372934069079!GO:0009889;regulation of biosynthetic process;0.0465684962029821!GO:0035035;histone acetyltransferase binding;0.0466098349280489!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0467192985871565!GO:0008097;5S rRNA binding;0.0470702702769957!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.047134045553336!GO:0005777;peroxisome;0.0472656432689883!GO:0042579;microbody;0.0472656432689883!GO:0000060;protein import into nucleus, translocation;0.0477319141922747!GO:0044450;microtubule organizing center part;0.0478397115284568!GO:0008538;proteasome activator activity;0.0478397115284568!GO:0017134;fibroblast growth factor binding;0.0484442174091!GO:0035267;NuA4 histone acetyltransferase complex;0.0484442174091!GO:0043189;H4/H2A histone acetyltransferase complex;0.0487389365967905!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0487634017554066!GO:0043154;negative regulation of caspase activity;0.0494895731758391
+|sample_id=10411
+|sample_note=machine failed, remainder reloaded, low amount
+|sample_sex=male
+|sample_species=Human (Homo sapiens)
+|sample_strain=
+|sample_tissue=kidney
+|top_motifs=HNF1A:2.77374563956;DBP:1.53729215458;ALX1:1.4667558049;POU1F1:1.44369541146;RXRA_VDR{dimer}:1.42793229015;NKX3-2:1.10871090675;EP300:1.08632034165;XCPE1{core}:1.05989783762;NR6A1:1.03599500868;HAND1,2:0.960202219167;LHX3,4:0.941735812207;PBX1:0.910153566186;TEAD1:0.891400085128;NKX2-1,4:0.873924911996;GFI1:0.8301351031;STAT5{A,B}:0.808829577068;ADNP_IRX_SIX_ZHX:0.793296744177;TBX4,5:0.78835840352;NFY{A,B,C}:0.770702137103;SP1:0.737487740549;POU3F1..4:0.69275132938;E2F1..5:0.662519691019;ARID5B:0.662127917904;HNF4A_NR2F1,2:0.655604384983;TP53:0.635808443604;NKX2-3_NKX2-5:0.627192041123;TLX1..3_NFIC{dimer}:0.622268617744;TFCP2:0.612099823781;POU2F1..3:0.6028439126;FOXQ1:0.562689409342;NFE2:0.559233044928;LMO2:0.544053470391;CDC5L:0.535815303994;ZNF423:0.51708386652;HIF1A:0.516283837439;ZBTB16:0.50741301536;NFE2L2:0.495387509801;ZBTB6:0.482498147556;BACH2:0.448704233012;ELK1,4_GABP{A,B1}:0.425828883298;HSF1,2:0.42369888871;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.403559270711;SNAI1..3:0.380066715945;EBF1:0.377238989231;CUX2:0.335500398014;IRF7:0.323738719427;FOX{F1,F2,J1}:0.276275874248;STAT1,3:0.274588157833;GFI1B:0.272570889352;FOS_FOS{B,L1}_JUN{B,D}:0.253253089093;AHR_ARNT_ARNT2:0.241014660125;FOSL2:0.236722181031;NRF1:0.234616138264;EVI1:0.231154011965;ZNF143:0.226303987921;MAFB:0.226078723874;ATF2:0.222140113504;MYOD1:0.21667123084;NR3C1:0.215695370663;FOXL1:0.206528842013;SMAD1..7,9:0.190517860527;PITX1..3:0.180842499125;RBPJ:0.155037002864;ZEB1:0.138748604335;RXR{A,B,G}:0.133868546545;NFKB1_REL_RELA:0.123351306365;POU5F1:0.116601806523;HOXA9_MEIS1:0.112908362438;HOX{A5,B5}:0.107183726729;VSX1,2:0.0806057223972;ZNF148:0.0780581391554;PAX4:0.0770012521885;MYB:0.0751739993779;CDX1,2,4:0.0723426227638;STAT2,4,6:0.0720558953643;RFX1:0.0596782829031;NKX2-2,8:0.0585110185816;PAX5:0.0360935586838;ONECUT1,2:0.0295018321385;ALX4:0.0105269643218;PAX1,9:0.00660463152936;IKZF1:-0.00165486375716;PAX6:-0.0339024142364;IRF1,2:-0.0339602768542;MYBL2:-0.034078831533;PRRX1,2:-0.0598043967197;ESRRA:-0.0755765275166;CEBPA,B_DDIT3:-0.0808758276233;PAX8:-0.0818855468103;GTF2I:-0.0845121225477;MTE{core}:-0.1031262404;PATZ1:-0.114873281788;HIC1:-0.135719730281;SRF:-0.144223119174;ELF1,2,4:-0.148162316397;NFIX:-0.156975097241;NFATC1..3:-0.15973818541;RFX2..5_RFXANK_RFXAP:-0.186389519987;MEF2{A,B,C,D}:-0.188808137969;ATF6:-0.195186533223;UFEwm:-0.2035500003;MAZ:-0.207284025963;TBP:-0.218048828088;NANOG:-0.223757476088;GLI1..3:-0.238781961834;XBP1:-0.277777006841;TEF:-0.286294403036;HES1:-0.287264014579;SOX2:-0.288515308603;GTF2A1,2:-0.299960302765;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.302972020362;ETS1,2:-0.307660344885;TFDP1:-0.32134669281;MZF1:-0.327663208597;ATF5_CREB3:-0.332505767035;PPARG:-0.350899732522;TFAP2B:-0.367055205155;POU6F1:-0.367234262656;GATA6:-0.375920432601;HLF:-0.388177509512;TAL1_TCF{3,4,12}:-0.391198185295;RUNX1..3:-0.396499212586;YY1:-0.433428876192;MED-1{core}:-0.434666149436;TFAP2{A,C}:-0.439884735837;NANOG{mouse}:-0.440414008484;bHLH_family:-0.453933228978;PDX1:-0.471532195663;SPIB:-0.475248801217;NKX6-1,2:-0.475773160592;FOXN1:-0.492019926206;NR1H4:-0.492628008778;PRDM1:-0.493145347682;FOXM1:-0.512508052937;EGR1..3:-0.527629018779;LEF1_TCF7_TCF7L1,2:-0.532936952683;NHLH1,2:-0.538215442659;FOX{D1,D2}:-0.544240991984;RREB1:-0.545001828687;KLF4:-0.549580629188;NKX3-1:-0.552604444225;BREu{core}:-0.565593049249;TGIF1:-0.567234222334;SPI1:-0.576396970314;MYFfamily:-0.598580638328;AR:-0.606521321436;TLX2:-0.61484606679;HOX{A6,A7,B6,B7}:-0.621320844761;FOXA2:-0.636960642724;REST:-0.63706168491;SOX17:-0.638667635595;ZFP161:-0.641461731701;CRX:-0.644029780019;NFIL3:-0.646611649287;FOXD3:-0.654245226944;NFE2L1:-0.677242584757;FOXP3:-0.681370280273;OCT4_SOX2{dimer}:-0.697350266163;ZIC1..3:-0.714465266987;AIRE:-0.724481069122;FOXP1:-0.732537605799;MTF1:-0.737601038338;HMX1:-0.751446216713;TOPORS:-0.776116825771;NR5A1,2:-0.780693744654;HMGA1,2:-0.792625537725;GZF1:-0.806452045195;PAX2:-0.82207428464;ATF4:-0.828731064654;BPTF:-0.862707211938;GCM1,2:-0.871892578462;PAX3,7:-0.897355093146;ESR1:-0.897965666844;SREBF1,2:-0.931703579512;ZNF384:-0.942258147715;T:-0.961782788036;SOX{8,9,10}:-0.970995329411;CREB1:-1.00734695151;HOX{A4,D4}:-1.00946846121;EN1,2:-1.01934770399;SOX5:-1.0218964143;IKZF2:-1.07814732679;JUN:-1.11292876116;FOXO1,3,4:-1.15339840623;SPZ1:-1.15640524076;DMAP1_NCOR{1,2}_SMARC:-1.16035307108;RORA:-1.1981867976;ZNF238:-1.25210818182;TFAP4:-1.32033202251;HBP1_HMGB_SSRP1_UBTF:-1.50431155631;FOX{I1,J2}:-1.70245420851;GATA4:-1.86391171231
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10411-106B6;search_select_hide=table117:FF:10411-106B6
 }}

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FF:10411-106B6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 13:59, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0