FF:10415-106C1: Difference between revisions

Latest revision as of 14:00, 3 June 2020

Name:	gall bladder carcinoma cell line:TGBC2TKB
Species:	Human (Homo sapiens)
Library ID:	CNhs10733
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	gall bladder
dev stage	NA
sex	female
age	unknown
cell type	unclassifiable
cell line	TGBC2TKB
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005593

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10733		CAGE		DRX007889		DRR008761

Accession ID Hg19

Library id		BAM		CTSS
CNhs10733		DRZ000186		DRZ001571

Accession ID Hg38

Library id		BAM		CTSS
CNhs10733		DRZ011536		DRZ012921

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0502
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0939
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.191
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0167
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0294
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0334
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.139
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.236
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.555
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.021
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.0335
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0335
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.00122
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.0364
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0335
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0335
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.256
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.373
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10733

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.66
MA0003.1	MA0003.1	0.55
MA0004.1	MA0004.1	0.525
MA0006.1	MA0006.1	0.469
MA0007.1	MA0007.1	0.504
MA0009.1	MA0009.1	0.434
MA0014.1	MA0014.1	0.0704
MA0017.1	MA0017.1	0.691
MA0018.2	MA0018.2	0.637
MA0019.1	MA0019.1	0.454
MA0024.1	MA0024.1	0.652
MA0025.1	MA0025.1	0.174
MA0027.1	MA0027.1	0.764
MA0028.1	MA0028.1	7.2445e-9
MA0029.1	MA0029.1	0.571
MA0030.1	MA0030.1	0.315
MA0031.1	MA0031.1	0.559
MA0035.2	MA0035.2	0.92
MA0038.1	MA0038.1	0.0758
MA0039.2	MA0039.2	4.8828e-4
MA0040.1	MA0040.1	0.833
MA0041.1	MA0041.1	0.313
MA0042.1	MA0042.1	0.732
MA0043.1	MA0043.1	0.0255
MA0046.1	MA0046.1	0.106
MA0047.2	MA0047.2	0.263
MA0048.1	MA0048.1	0.311
MA0050.1	MA0050.1	0.942
MA0051.1	MA0051.1	0.055
MA0052.1	MA0052.1	0.0163
MA0055.1	MA0055.1	0.00171
MA0057.1	MA0057.1	0.502
MA0058.1	MA0058.1	0.436
MA0059.1	MA0059.1	0.97
MA0060.1	MA0060.1	0.039
MA0061.1	MA0061.1	0.317
MA0062.2	MA0062.2	1.24398e-6
MA0065.2	MA0065.2	0.234
MA0066.1	MA0066.1	0.892
MA0067.1	MA0067.1	0.396
MA0068.1	MA0068.1	6.63606e-4
MA0069.1	MA0069.1	0.731
MA0070.1	MA0070.1	0.285
MA0071.1	MA0071.1	0.212
MA0072.1	MA0072.1	0.67
MA0073.1	MA0073.1	0.439
MA0074.1	MA0074.1	0.435
MA0076.1	MA0076.1	1.04826e-6
MA0077.1	MA0077.1	0.184
MA0078.1	MA0078.1	0.596
MA0079.2	MA0079.2	0.179
MA0080.2	MA0080.2	0.00222
MA0081.1	MA0081.1	0.298
MA0083.1	MA0083.1	0.48
MA0084.1	MA0084.1	0.754
MA0087.1	MA0087.1	0.149
MA0088.1	MA0088.1	0.626
MA0090.1	MA0090.1	2.57356e-4
MA0091.1	MA0091.1	0.0379
MA0092.1	MA0092.1	0.885
MA0093.1	MA0093.1	0.692
MA0099.2	MA0099.2	3.33579e-14
MA0100.1	MA0100.1	0.714
MA0101.1	MA0101.1	0.00415
MA0102.2	MA0102.2	0.748
MA0103.1	MA0103.1	1.32532e-6
MA0104.2	MA0104.2	0.865
MA0105.1	MA0105.1	0.831
MA0106.1	MA0106.1	0.904
MA0107.1	MA0107.1	0.0288
MA0108.2	MA0108.2	0.293
MA0111.1	MA0111.1	0.277
MA0112.2	MA0112.2	0.282
MA0113.1	MA0113.1	0.183
MA0114.1	MA0114.1	0.0635
MA0115.1	MA0115.1	0.947
MA0116.1	MA0116.1	0.0818
MA0117.1	MA0117.1	0.699
MA0119.1	MA0119.1	0.466
MA0122.1	MA0122.1	0.731
MA0124.1	MA0124.1	0.309
MA0125.1	MA0125.1	0.63
MA0131.1	MA0131.1	0.61
MA0135.1	MA0135.1	0.431
MA0136.1	MA0136.1	0.218
MA0137.2	MA0137.2	2.34054e-5
MA0138.2	MA0138.2	0.113
MA0139.1	MA0139.1	2.50149e-4
MA0140.1	MA0140.1	0.38
MA0141.1	MA0141.1	0.158
MA0142.1	MA0142.1	0.91
MA0143.1	MA0143.1	0.479
MA0144.1	MA0144.1	0.00144
MA0145.1	MA0145.1	0.117
MA0146.1	MA0146.1	0.71
MA0147.1	MA0147.1	0.991
MA0148.1	MA0148.1	0.0304
MA0149.1	MA0149.1	0.145
MA0150.1	MA0150.1	7.46974e-5
MA0152.1	MA0152.1	0.208
MA0153.1	MA0153.1	0.499
MA0154.1	MA0154.1	0.974
MA0155.1	MA0155.1	0.163
MA0156.1	MA0156.1	0.0418
MA0157.1	MA0157.1	0.536
MA0159.1	MA0159.1	0.269
MA0160.1	MA0160.1	0.903
MA0162.1	MA0162.1	0.856
MA0163.1	MA0163.1	0.0152
MA0164.1	MA0164.1	0.953
MA0258.1	MA0258.1	0.664
MA0259.1	MA0259.1	0.886

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10733

Novel motif	Logo	P-value
1	1	0.944
10	10	0.212
100	100	0.637
101	101	0.237
102	102	0.987
103	103	0.778
104	104	0.814
105	105	0.198
106	106	0.145
107	107	0.569
108	108	0.18
109	109	0.913
11	11	0.239
110	110	0.586
111	111	0.198
112	112	0.118
113	113	0.0287
114	114	0.892
115	115	0.132
116	116	0.0954
117	117	0.121
118	118	0.503
119	119	0.653
12	12	0.454
120	120	0.279
121	121	0.484
122	122	0.952
123	123	0.0141
124	124	0.082
125	125	0.276
126	126	0.167
127	127	0.444
128	128	0.188
129	129	0.404
13	13	0.135
130	130	0.466
131	131	0.208
132	132	0.235
133	133	0.0115
134	134	0.638
135	135	0.614
136	136	0.145
137	137	0.0615
138	138	0.959
139	139	0.201
14	14	0.625
140	140	0.113
141	141	0.921
142	142	0.65
143	143	0.76
144	144	0.255
145	145	0.0838
146	146	0.339
147	147	0.785
148	148	0.505
149	149	0.261
15	15	0.723
150	150	0.704
151	151	0.748
152	152	0.374
153	153	0.441
154	154	0.499
155	155	0.558
156	156	0.144
157	157	0.398
158	158	0.764
159	159	0.868
16	16	0.63
160	160	0.204
161	161	0.839
162	162	0.498
163	163	0.326
164	164	0.416
165	165	0.914
166	166	0.453
167	167	0.252
168	168	0.82
169	169	0.971
17	17	0.693
18	18	0.61
19	19	0.684
2	2	0.737
20	20	0.0925
21	21	0.884
22	22	0.235
23	23	0.741
24	24	0.262
25	25	0.299
26	26	0.586
27	27	0.194
28	28	0.135
29	29	0.803
3	3	0.611
30	30	0.249
31	31	0.369
32	32	3.69568e-4
33	33	0.28
34	34	0.25
35	35	0.0445
36	36	0.782
37	37	0.982
38	38	0.855
39	39	0.901
4	4	0.301
40	40	0.887
41	41	0.159
42	42	0.618
43	43	0.197
44	44	0.691
45	45	0.125
46	46	0.196
47	47	0.868
48	48	0.966
49	49	0.141
5	5	0.935
50	50	0.537
51	51	0.942
52	52	0.334
53	53	0.303
54	54	0.873
55	55	0.972
56	56	0.679
57	57	0.908
58	58	0.605
59	59	0.65
6	6	0.895
60	60	0.298
61	61	0.195
62	62	0.189
63	63	0.433
64	64	0.537
65	65	0.486
66	66	0.0046
67	67	0.433
68	68	0.0525
69	69	0.261
7	7	0.899
70	70	0.23
71	71	0.789
72	72	0.907
73	73	0.925
74	74	0.289
75	75	0.114
76	76	0.841
77	77	0.316
78	78	0.256
79	79	0.0256
8	8	0.237
80	80	0.787
81	81	0.00838
82	82	0.00176
83	83	0.647
84	84	0.493
85	85	0.0584
86	86	0.567
87	87	0.124
88	88	0.504
89	89	0.76
9	9	0.3
90	90	0.266
91	91	0.0325
92	92	0.432
93	93	0.965
94	94	0.174
95	95	0.741
96	96	0.579
97	97	0.182
98	98	0.091
99	99	0.413

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10733

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:1000415 epithelial cell of gall bladder
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000415 (epithelial cell of gall bladder)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002110 (gallbladder)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0005177 (trunk region element)
0005172 (abdomen element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0002294 (biliary system)
0001173 (biliary tree)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007784
+|DRA_sample_Accession=CAGE@SAMD00005593
+|accession_numbers=CAGE;DRX007889;DRR008761;DRZ000186;DRZ001571;DRZ011536;DRZ012921
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002110,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0005177,UBERON:0005172,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0002294,UBERON:0001173,UBERON:0000916,UBERON:0002423
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000415
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.11!126.89!EHF;;chr11:34645791..34645836,+!p3@EHF!1.76!56.59!EHF;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.65!43.69!SOHLH2;;chr6:10415276..10415341,-!p2@TFAP2A!1.54!40.72!TFAP2A;;chr6:1312325..1312340,+!p1@FOXQ1!1.49!48.34!FOXQ1;;chr7:27153454..27153469,-!p2@HOXA3!1.44!26.61!HOXA3;;chr6:10412600..10412637,-!p1@TFAP2A!1.39!38.56!TFAP2A;;chr7:26191809..26191890,+!p1@NFE2L3!1.38!109.34!NFE2L3;;chr1:201979743..201979762,+!p1@ELF3!1.34!21.08!ELF3;;chr11:46299199..46299233,+!p1@CREB3L1!1.32!100.52!CREB3L1;;chr8:72756063..72756125,-!p1@MSC!1.28!36.47!MSC;;chr8:55370487..55370503,+!p1@SOX17!1.27!17.55!SOX17;;chr6:45390025..45390076,+!p2@RUNX2!1.25!40.32!RUNX2;;chr6:45390300..45390335,+!p4@RUNX2!1.25!26.05!RUNX2;;chr8:72755987..72756002,-!p7@MSC!1.25!16.83!MSC;;chr6:10412392..10412409,-!p4@TFAP2A!1.21!17.47!TFAP2A;;chr7:28448965..28448994,+!p2@CREB5!1.20!51.78!CREB5;;chr17:46682321..46682362,-!p1@HOXB6!1.20!14.67!HOXB6;;chr12:66218598..66218645,+!p2@HMGA2!1.17!63.97!HMGA2;;chr8:72756637..72756664,-!p3@MSC!1.16!15.31!MSC;;chr6:45390077..45390105,+!p9@RUNX2!1.15!16.67!RUNX2;;chr11:34642656..34642667,+!p2@EHF!1.14!12.67!EHF;;chr1:201979703..201979721,+!p2@ELF3!1.13!12.42!ELF3;;chr1:209979467..209979494,-!p1@IRF6!1.11!13.23!IRF6;;chr12:66218255..66218304,+!p3@HMGA2!1.04!26.85!HMGA2;;chr17:46703687..46703740,-!p1@HOXB9!1.04!10.02!HOXB9;;chr6:45390343..45390388,+!p10@RUNX2!1.02!12.99!RUNX2;;chr18:55102598..55102623,+!p1@ONECUT2!1.02!9.54!ONECUT2;;chr18:55102628..55102646,+!p2@ONECUT2!1.02!9.46!ONECUT2;;chr14:38064429..38064486,-!p1@FOXA1!1.02!9.38!FOXA1;;chr6:10415484..10415508,-!p3@TFAP2A!1.01!9.22!TFAP2A;;chr5:72744445..72744466,-!p2@FOXD1!1.00!15.23!FOXD1;;chr6:45390269..45390298,+!p5@RUNX2!1.00!14.99!RUNX2;;chr6:45390002..45390023,+!p6@RUNX2!0.99!15.23!RUNX2;;chr19:45908292..45908374,-!p1@PPP1R13L!0.98!76.87!PPP1R13L;;chr12:27485762..27485776,+!p3@ARNTL2!0.97!22.77!ARNTL2;;chr14:62162285..62162296,+!p3@HIF1A!0.96!43.21!HIF1A;;chr7:115670804..115670825,-!p1@TFEC!0.96!8.18!TFEC;;chr8:72756023..72756055,-!p6@MSC!0.94!9.78!MSC;;chr8:72756667..72756736,-!p2@MSC!0.93!11.86!MSC;;chr11:65667884..65667895,-!p2@FOSL1!0.92!29.58!FOSL1;;chr11:61520075..61520136,+!p1@C11orf9!0.92!16.11!C11orf9;;chr6:10412576..10412599,-!p5@TFAP2A!0.92!7.37!TFAP2A;;chr14:62162258..62162269,+!p2@HIF1A!0.91!71.58!HIF1A;;chr7:17338324..17338341,+!p3@AHR!0.91!24.85!AHR;;chr17:46688334..46688385,-!p1@HOXB7!0.91!10.50!HOXB7;;chr3:114343768..114343822,-!p1@ZBTB20!0.90!31.66!ZBTB20;;chr19:45971246..45971265,+!p1@FOSB!0.88!129.06!FOSB;;chr5:134369905..134369972,-!p1@PITX1!0.88!10.34!PITX1;;chr6:34204921..34204939,+!p3@HMGA1!0.86!197.99!HMGA1;;chr7:17338266..17338282,+!p1@AHR!0.86!70.86!AHR;;chr19:45252008..45252024,+!p2@BCL3!0.85!21.32!BCL3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!0.85!6.01!ZBED1;;chr12:66218573..66218596,+!p7@HMGA2!0.84!9.14!HMGA2;;chr8:72756267..72756296,-!p4@MSC!0.83!8.74!MSC;;chr3:25469724..25469773,+!p1@RARB!0.83!8.50!RARB;;chr11:65667846..65667868,-!p1@FOSL1!0.82!160.48!FOSL1;;chr6:45390137..45390148,+!p12@RUNX2!0.82!5.61!RUNX2;;chr17:70117153..70117174,+!p1@SOX9!0.81!60.12!SOX9;;chr9:16705069..16705086,-!p3@BNC2!0.81!5.53!BNC2;;chr1:6479968..6479986,-!p1@HES2!0.81!5.53!HES2;;chr13:73633131..73633149,+!p1@KLF5!0.80!61.72!KLF5;;chr12:26277956..26277980,-!p1@BHLHE41!0.80!20.68!BHLHE41;;chr6:45390399..45390418,+!p15@RUNX2!0.80!5.29!RUNX2;;chr18:19749541..19749557,+!p1@GATA6!0.79!17.31!GATA6;;chr1:158979872..158979898,+!p3@IFI16!0.79!16.91!IFI16;;chr19:53636125..53636178,-!p1@ZNF415!0.79!15.79!ZNF415;;chr3:21792631..21792665,-!p3@ZNF385D!0.79!5.13!ZNF385D;;chr3:32023232..32023273,+!p1@ZNF860!0.78!7.45!ZNF860;;chr7:27153428..27153440,-!p3@HOXA3!0.78!5.05!HOXA3;;chr9:22447422..22447483,+!p1@DMRTA1!0.78!5.05!DMRTA1;;chr11:46299539..46299620,+!p2@CREB3L1!0.77!8.58!CREB3L1;;chr6:10413188..10413249,-!p7@TFAP2A!0.77!4.89!TFAP2A;;chr5:321810..321877,+!p1@AHRR!0.76!16.51!AHRR;;chr1:44513995..44514031,+!p1@KLF17!0.76!4.81!KLF17;;chr8:102504651..102504683,+!p1@GRHL2!0.76!4.73!GRHL2;;chr20:48599506..48599526,+!p1@SNAI1!0.75!32.70!SNAI1;;chr19:53496768..53496799,-!p1@ZNF702P!0.75!7.53!ZNF702P;;chr12:66218212..66218244,+!p5@HMGA2!0.75!7.05!HMGA2;;chr12:26277817..26277863,-!p2@BHLHE41!0.75!6.49!BHLHE41;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.74!47.37!ZNF595;;chr7:28725740..28725778,+!p1@CREB5!0.74!45.13!CREB5;;chr12:80084167..80084197,-!p5@PAWR!0.74!11.46!PAWR;;chr6:85473156..85473210,-!p2@TBX18!0.74!5.69!TBX18;;chr1:40105299..40105326,-!p1@HEYL!0.74!4.49!HEYL;;chr5:72744594..72744609,-!p1@FOXD1!0.73!22.36!FOXD1;;chr7:101917407..101917443,+!p3@CUX1!0.73!4.33!CUX1;;chr3:25469815..25469866,+!p3@RARB!0.73!4.33!RARB;;chr6:15246200..15246214,+!p2@JARID2!0.72!12.75!JARID2;;chr6:45390442..45390479,+!p8@RUNX2!0.72!6.81!RUNX2;;chr17:41622765..41622821,-!p2@ETV4!0.72!6.73!ETV4;;chr19:53289995..53290050,-!p1@ZNF600!0.71!18.84!ZNF600;;chr12:66218183..66218209,+!p4@HMGA2!0.71!8.58!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F1!0.21!31.82!ATF1;;chr7:64467057..64467078,-!p1@ZNF117!0.21!26.69!ZNF117;;chr18:47807845..47807918,-!p1@MBD1!0.21!25.01!MBD1;;chr16:31885093..31885165,+!p1@ZNF267!0.21!21.88!ZNF267;;chr10:45496346..45496409,+!p1@ZNF22!0.21!20.28!ZNF22;;chr4:76439665..76439699,+!p1@THAP6!0.21!19.96!THAP6;;chr16:69419871..69419927,-!p1@TERF2!0.21!19.16!TERF2;;chr19:53935221..53935258,+!p1@ZNF761!0.21!14.03!ZNF761;;chr1:151319710..151319774,-!p1@RFX5!0.21!13.87!RFX5;;chr11:67007477..67007493,+!p2@KDM2A!0.21!12.02!KDM2A;;chr11:123612319..123612395,-!p1@ZNF202!0.21!7.70!ZNF202;;chr9:35732647..35732678,+!p2@CREB3!0.21!7.37!CREB3;;chr11:65686952..65686975,+!p5@DRAP1!0.21!7.29!DRAP1;;chr16:68119324..68119364,+!p1@NFATC3!0.21!5.85!NFATC3;;chr3:71630980..71631110,-!p3@FOXP1!0.21!4.33!FOXP1;;chr19:57751980..57752019,+!p2@ZNF805!0.21!4.17!ZNF805;;chr6:134274295..134274308,+!p2@TBPL1!0.21!4.17!TBPL1;;chr19:44598498..44598529,+!p1@ZNF224!0.21!3.93!ZNF224;;chr16:67062996..67063016,+!p3@CBFB!0.21!3.69!CBFB;;chr18:45457478..45457517,-!p6@SMAD2!0.21!3.53!SMAD2;;chr4:26322267..26322334,+!p3@RBPJ!0.21!2.73!RBPJ;;chr1:42501569..42501614,-!p1@HIVEP3!0.21!2.24!HIVEP3;;chr8:23540441..23540466,-!p1@NKX3-1!0.21!2.16!NKX3-1;;chr10:44101902..44101932,+!p2@ZNF485!0.21!2.16!ZNF485;;chr20:52210368..52210384,-!p1@ZNF217!0.21!2.00!ZNF217;;chr20:50808252..50808264,-!p4@ZFP64!0.21!1.68!ZFP64;;chr9:109625229..109625282,+!p2@ZNF462!0.21!1.60!ZNF462;;chr17:38465413..38465438,+!p5@RARA!0.21!1.52!RARA;;chr15:96874216..96874236,+!p13@NR2F2!0.21!1.44!NR2F2;;chr11:64764435..64764449,-!p1@BATF2!0.21!1.20!BATF2;;chr20:49547674..49547685,-!p7@ADNP!0.21!1.12!ADNP;;chr20:55204351..55204377,+!p1@TFAP2C!0.21!1.04!TFAP2C;;chr7:14028743..14028799,-!p3@ETV1!0.21!1.04!ETV1;;chr17:38497662..38497713,+!p4@RARA!0.21!0.88!RARA;;chr11:85376028..85376035,-!p5@CREBZF!0.21!0.72!CREBZF;;chr21:36260980..36261011,-!p1@RUNX1!0.20!40.64!RUNX1;;chr4:38665810..38665827,+!p1@KLF3!0.20!20.20!KLF3;;chr2:75937994..75938054,-!p1@GCFC2!0.20!19.72!GCFC2;;chr12:498415..498492,-!p1@KDM5A!0.20!15.31!KDM5A;;chr19:56826201..56826247,-!p1@ZSCAN5A!0.20!8.66!ZSCAN5A;;chr9:135282195..135282240,-!p1@TTF1!0.20!7.86!TTF1;;chr19:20748574..20748599,-!p1@ZNF737!0.20!7.86!ZNF737;;chr17:47439568..47439641,-!p2@ZNF652!0.20!7.53!ZNF652;;chr10:94449703..94449718,+!p1@HHEX!0.20!4.73!HHEX;;chr21:27107465..27107557,+!p3@GABPA!0.20!4.49!GABPA;;chr19:53238260..53238312,-!p1@ZNF611!0.20!4.33!ZNF611;;chr1:40997285..40997352,+!p1@ZNF684!0.20!4.25!ZNF684;;chr21:30671690..30671762,+!p2@BACH1!0.20!4.17!BACH1;;chr3:71179746..71179783,-!p7@FOXP1!0.20!4.09!FOXP1;;chr5:43121711..43121753,+!p2@ZNF131!0.20!3.37!ZNF131;;chr12:133758115..133758138,+!p3@ZNF268!0.20!2.65!ZNF268;;chr1:153939955..153940009,+!p2@CREB3L4!0.20!2.57!CREB3L4;;chr22:38598057..38598071,+!p3@MAFF!0.20!2.57!MAFF;;chr2:75937794..75937867,-!p2@GCFC2!0.20!2.40!GCFC2;;chr6:151712800..151712835,-!p2@ZBTB2!0.20!2.40!ZBTB2;;chr12:56753939..56753951,-!p2@STAT2!0.20!2.24!STAT2;;chr5:178157700..178157734,-!p3@ZNF354A!0.20!2.16!ZNF354A;;chr1:61548374..61548415,+!p4@NFIA!0.20!1.84!NFIA;;chr9:14314106..14314119,-!p5@NFIB!0.20!1.76!NFIB;;chr9:73028598..73028617,-!p5@KLF9!0.20!1.60!KLF9;;chr19:12551785..12551823,-!p1@ZNF443!0.20!1.52!ZNF443;;chr1:43148716..43148756,+!p6@YBX1!0.20!0.96!YBX1;;chr15:77713095..77713113,+!p5@HMG20A!0.20!0.88!HMG20A;;chr5:124082279..124082319,-!p3@ZNF608!0.20!0.88!ZNF608;;chr5:137804405..137804444,+!p3@EGR1!0.20!0.88!EGR1;;chr9:4300004..4300015,-!p6@GLIS3!0.20!0.80!GLIS3;;chr13:27998720..27998826,+!p1@GTF3A!0.19!133.62!GTF3A;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!0.19!80.48!PCBP4;;chr17:46125707..46125746,+!p2@NFE2L1!0.19!74.07!NFE2L1;;chr8:73921085..73921125,+!p1@TERF1!0.19!39.44!TERF1;;chr22:35653468..35653501,+!p1@HMGXB4!0.19!34.71!HMGXB4;;chr4:57774042..57774114,+!p1@REST!0.19!33.83!REST;;chr3:101395963..101395993,-!p1@ZBTB11!0.19!20.84!ZBTB11;;chr19:57791328..57791377,+!p2@ZNF460!0.19!16.35!ZNF460;;chr19:35168567..35168620,+!p1@ZNF302!0.19!15.63!ZNF302;;chr1:202777592..202777616,-!p2@KDM5B!0.19!14.59!KDM5B;;chr6:33168126..33168180,-!p2@RXRB!0.19!14.11!RXRB;;chr2:231191875..231191918,+!p1@SP140L!0.19!13.07!SP140L;;chr6:116989916..116989979,-!p1@ZUFSP!0.19!12.67!ZUFSP;;chr4:38665769..38665801,+!p2@KLF3!0.19!12.10!KLF3;;chr11:76092097..76092183,-!p1@PRKRIR!0.19!10.58!PRKRIR;;chr19:44507091..44507163,+!p1@ZNF230!0.19!5.45!ZNF230;;chr18:45457423..45457468,-!p5@SMAD2!0.19!4.41!SMAD2;;chr7:99156145..99156207,+!p5@ZNF655!0.19!4.01!ZNF655;;chr19:37341752..37341816,+!p1@ZNF345!0.19!3.45!ZNF345;;chr10:97890024..97890064,+!p2@ZNF518A!0.19!3.05!ZNF518A;;chr19:37958318..37958365,-!p2@ZNF569!0.19!2.89!ZNF569;;chr19:52430697..52430749,+!p1@ZNF613!0.19!2.57!ZNF613;;chr7:99102267..99102304,+!p2@ZKSCAN5!0.19!2.48!ZKSCAN5;;chr2:113033141..113033162,+!p2@ZC3H6!0.19!2.16!ZC3H6;;chr6:26659967..26659982,-!p1@ZNF322P1,p1@ZNF322!0.19!2.08!ZNF322;;chr8:123793959..123793977,+!p4@ZHX2!0.19!1.92!ZHX2;;chr18:74072572..74072588,-!p2@ZNF516!0.19!1.44!ZNF51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@@ Line 38: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC2TKB.CNhs10733.10415-106C1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC2TKB.CNhs10733.10415-106C1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC2TKB.CNhs10733.10415-106C1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC2TKB.CNhs10733.10415-106C1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC2TKB.CNhs10733.10415-106C1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10415-106C1
 |is_a=CL:1000415;;EFO:0002091;;FF:0000210;;FF:0100297
 |is_obsolete=
-|library_ids=CNhs10733
+|library_id=CNhs10733
+|library_id_phase_based=2:CNhs10733
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10415
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10415
 |name=gall bladder carcinoma cell line:TGBC2TKB
 |namespace=FANTOM5
@@ Line 47: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10733,LSID691,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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-}} {{DRAAccessionNumbers
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-|DRA_sample_Accession=CAGE@DRS007784
-|accession_numbers=DRX007889;DRR008761;DRZ000186;DRZ001571;CAGE
-|library_id=CNhs10733
 }}

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FF:10415-106C1: Difference between revisions

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Latest revision as of 14:00, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0