FF:10419-106C5: Difference between revisions

Latest revision as of 14:00, 3 June 2020

Name:	breast carcinoma cell line:MDA-MB-453
Species:	Human (Homo sapiens)
Library ID:	CNhs10736
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	breast
dev stage	NA
sex	female
age	unknown
cell type	unclassifiable
cell line	MDA-MB-453
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005250

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10736		CAGE		DRX007838		DRR008710

Accession ID Hg19

Library id		BAM		CTSS
CNhs10736		DRZ000135		DRZ001520

Accession ID Hg38

Library id		BAM		CTSS
CNhs10736		DRZ011485		DRZ012870

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0332
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0.842
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.237
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.108
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0749
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0.0364
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0856
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.215
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.101
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0577
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.158
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0364
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0109
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0304
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.136
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10736

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00873
MA0003.1	MA0003.1	0.271
MA0004.1	MA0004.1	0.679
MA0006.1	MA0006.1	0.462
MA0007.1	MA0007.1	0.533
MA0009.1	MA0009.1	0.964
MA0014.1	MA0014.1	0.0396
MA0017.1	MA0017.1	0.0971
MA0018.2	MA0018.2	0.992
MA0019.1	MA0019.1	0.983
MA0024.1	MA0024.1	6.86553e-4
MA0025.1	MA0025.1	0.0998
MA0027.1	MA0027.1	0.745
MA0028.1	MA0028.1	3.45304e-4
MA0029.1	MA0029.1	0.129
MA0030.1	MA0030.1	0.247
MA0031.1	MA0031.1	0.0831
MA0035.2	MA0035.2	0.656
MA0038.1	MA0038.1	0.00517
MA0039.2	MA0039.2	0.00801
MA0040.1	MA0040.1	0.77
MA0041.1	MA0041.1	0.53
MA0042.1	MA0042.1	0.577
MA0043.1	MA0043.1	0.673
MA0046.1	MA0046.1	0.0316
MA0047.2	MA0047.2	3.79081e-5
MA0048.1	MA0048.1	0.531
MA0050.1	MA0050.1	6.25861e-7
MA0051.1	MA0051.1	0.004
MA0052.1	MA0052.1	0.125
MA0055.1	MA0055.1	0.00229
MA0057.1	MA0057.1	0.938
MA0058.1	MA0058.1	0.546
MA0059.1	MA0059.1	0.54
MA0060.1	MA0060.1	1.36706e-17
MA0061.1	MA0061.1	9.25525e-5
MA0062.2	MA0062.2	0.00244
MA0065.2	MA0065.2	0.617
MA0066.1	MA0066.1	0.152
MA0067.1	MA0067.1	0.607
MA0068.1	MA0068.1	0.626
MA0069.1	MA0069.1	0.62
MA0070.1	MA0070.1	0.163
MA0071.1	MA0071.1	0.792
MA0072.1	MA0072.1	0.0166
MA0073.1	MA0073.1	0.864
MA0074.1	MA0074.1	0.308
MA0076.1	MA0076.1	1.92676e-4
MA0077.1	MA0077.1	0.666
MA0078.1	MA0078.1	0.831
MA0079.2	MA0079.2	0.198
MA0080.2	MA0080.2	2.69579e-7
MA0081.1	MA0081.1	0.0179
MA0083.1	MA0083.1	0.0098
MA0084.1	MA0084.1	0.145
MA0087.1	MA0087.1	0.854
MA0088.1	MA0088.1	0.881
MA0090.1	MA0090.1	0.959
MA0091.1	MA0091.1	0.0732
MA0092.1	MA0092.1	0.13
MA0093.1	MA0093.1	0.603
MA0099.2	MA0099.2	4.2499e-8
MA0100.1	MA0100.1	0.174
MA0101.1	MA0101.1	0.00741
MA0102.2	MA0102.2	0.155
MA0103.1	MA0103.1	2.64162e-7
MA0104.2	MA0104.2	0.106
MA0105.1	MA0105.1	8.54877e-6
MA0106.1	MA0106.1	0.127
MA0107.1	MA0107.1	0.00212
MA0108.2	MA0108.2	0.664
MA0111.1	MA0111.1	0.791
MA0112.2	MA0112.2	0.148
MA0113.1	MA0113.1	0.939
MA0114.1	MA0114.1	0.899
MA0115.1	MA0115.1	0.836
MA0116.1	MA0116.1	0.0193
MA0117.1	MA0117.1	0.691
MA0119.1	MA0119.1	0.995
MA0122.1	MA0122.1	0.74
MA0124.1	MA0124.1	0.343
MA0125.1	MA0125.1	0.0139
MA0131.1	MA0131.1	0.0329
MA0135.1	MA0135.1	0.36
MA0136.1	MA0136.1	0.00112
MA0137.2	MA0137.2	0.262
MA0138.2	MA0138.2	0.129
MA0139.1	MA0139.1	0.678
MA0140.1	MA0140.1	0.8
MA0141.1	MA0141.1	0.331
MA0142.1	MA0142.1	0.509
MA0143.1	MA0143.1	0.07
MA0144.1	MA0144.1	0.222
MA0145.1	MA0145.1	0.686
MA0146.1	MA0146.1	0.222
MA0147.1	MA0147.1	0.0845
MA0148.1	MA0148.1	2.41986e-5
MA0149.1	MA0149.1	0.699
MA0150.1	MA0150.1	0.00145
MA0152.1	MA0152.1	0.871
MA0153.1	MA0153.1	0.772
MA0154.1	MA0154.1	0.0217
MA0155.1	MA0155.1	0.101
MA0156.1	MA0156.1	0.0782
MA0157.1	MA0157.1	0.791
MA0159.1	MA0159.1	0.671
MA0160.1	MA0160.1	0.984
MA0162.1	MA0162.1	0.283
MA0163.1	MA0163.1	0.00441
MA0164.1	MA0164.1	0.431
MA0258.1	MA0258.1	0.506
MA0259.1	MA0259.1	0.0431

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10736

Novel motif	Logo	P-value
1	1	0.77
10	10	0.471
100	100	0.679
101	101	0.392
102	102	0.919
103	103	0.072
104	104	0.472
105	105	0.949
106	106	0.00551
107	107	0.0446
108	108	0.975
109	109	0.739
11	11	0.374
110	110	0.65
111	111	0.528
112	112	0.146
113	113	0.0462
114	114	0.231
115	115	0.205
116	116	0.23
117	117	0.246
118	118	0.28
119	119	0.959
12	12	0.721
120	120	0.653
121	121	0.213
122	122	0.0881
123	123	0.277
124	124	0.097
125	125	0.243
126	126	0.969
127	127	0.775
128	128	0.0255
129	129	0.887
13	13	0.113
130	130	0.357
131	131	0.164
132	132	0.221
133	133	0.277
134	134	0.818
135	135	0.147
136	136	0.0977
137	137	0.317
138	138	0.225
139	139	0.88
14	14	0.757
140	140	0.144
141	141	0.911
142	142	0.817
143	143	0.168
144	144	0.0441
145	145	0.189
146	146	0.725
147	147	0.334
148	148	0.223
149	149	0.114
15	15	0.704
150	150	0.948
151	151	0.287
152	152	0.0454
153	153	0.705
154	154	0.882
155	155	0.135
156	156	0.17
157	157	0.821
158	158	0.971
159	159	0.903
16	16	0.189
160	160	0.23
161	161	0.824
162	162	0.761
163	163	0.311
164	164	0.875
165	165	0.649
166	166	0.0119
167	167	0.944
168	168	0.00152
169	169	0.675
17	17	0.999
18	18	0.0347
19	19	0.211
2	2	0.253
20	20	0.259
21	21	0.415
22	22	0.515
23	23	0.0523
24	24	0.571
25	25	0.608
26	26	0.811
27	27	0.78
28	28	0.603
29	29	0.261
3	3	0.244
30	30	0.547
31	31	0.337
32	32	0.0588
33	33	0.93
34	34	0.134
35	35	0.254
36	36	0.529
37	37	0.0785
38	38	0.573
39	39	0.746
4	4	0.582
40	40	0.634
41	41	0.0741
42	42	0.761
43	43	0.0918
44	44	0.183
45	45	0.966
46	46	0.244
47	47	0.904
48	48	0.892
49	49	0.536
5	5	0.373
50	50	0.889
51	51	0.685
52	52	0.222
53	53	0.725
54	54	0.672
55	55	0.473
56	56	0.494
57	57	0.858
58	58	0.435
59	59	0.0158
6	6	0.313
60	60	0.077
61	61	0.614
62	62	0.115
63	63	0.937
64	64	0.99
65	65	0.258
66	66	0.00362
67	67	0.224
68	68	0.0612
69	69	0.515
7	7	0.874
70	70	0.255
71	71	0.449
72	72	0.341
73	73	0.224
74	74	0.18
75	75	0.203
76	76	0.893
77	77	0.237
78	78	0.57
79	79	0.0132
8	8	0.122
80	80	0.193
81	81	0.101
82	82	0.0547
83	83	0.469
84	84	0.912
85	85	0.0517
86	86	0.658
87	87	0.168
88	88	0.614
89	89	0.268
9	9	0.106
90	90	0.162
91	91	0.179
92	92	0.0797
93	93	0.411
94	94	0.318
95	95	0.315
96	96	0.0784
97	97	0.622
98	98	0.253
99	99	0.692

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10736

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101908 MDA-MB-453 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002327 (mammary gland epithelial cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
5093 (thoracic cancer)
305 (carcinoma)
1612 (breast cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0001911 (mammary gland)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002365 (exocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0001443 (chest)
0003100 (female organism)
0000915 (thoracic segment of trunk)
0002330 (exocrine system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100816 (breast cell line sample)
0104086 (mammary gland tumor cell line sample)
0100356 (breast cancer cell line sample)
0103568 (mammary gland cell line sample)
0101908 (MDA-MB-453 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0008425 (mammary ridge)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005250
+|accession_numbers=CAGE;DRX007838;DRR008710;DRZ000135;DRZ001520;DRZ011485;DRZ012870
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0001911,UBERON:0004121,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002365,UBERON:0002530,UBERON:0010317,UBERON:0001443,UBERON:0003100,UBERON:0000915,UBERON:0002330
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002327
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:34524093..34524135,-!p1@SPDEF!2.80!629.19!SPDEF;;chr10:8096631..8096660,+!p1@GATA3!2.63!512.78!GATA3;;chr14:38064429..38064486,-!p1@FOXA1!2.54!348.79!FOXA1;;chr11:34642612..34642646,+!p1@EHF!2.35!225.12!EHF;;chr6:50786591..50786614,+!p1@TFAP2B!2.28!188.56!TFAP2B;;chr6:50786509..50786527,+!p5@TFAP2B!2.15!141.42!TFAP2B;;chr6:50786547..50786564,+!p3@TFAP2B!2.08!119.73!TFAP2B;;chr6:50786571..50786590,+!p2@TFAP2B!2.03!105.39!TFAP2B;;chr13:72441315..72441454,-!p1@DACH1!2.00!191.19!DACH1;;chr6:10415276..10415341,-!p2@TFAP2A!1.97!111.51!TFAP2A;;chr6:10415484..10415508,-!p3@TFAP2A!1.93!83.79!TFAP2A;;chr8:116681409..116681431,-!p2@TRPS1!1.83!175.88!TRPS1;;chr10:8095593..8095625,+!p3@GATA3!1.81!74.43!GATA3;;chr11:34645791..34645836,+!p3@EHF!1.81!64.20!EHF;;chrX:66763856..66763896,+!p1@AR!1.80!87.90!AR;;chr6:10412600..10412637,-!p1@TFAP2A!1.76!92.18!TFAP2A;;chr2:45236540..45236577,-!p1@SIX2!1.74!53.53!SIX2;;chr1:153940716..153940739,+!p4@CREB3L4!1.72!51.78!CREB3L4;;chr6:10419768..10419819,-!p6@TFAP2A!1.72!50.99!TFAP2A;;chr11:120107344..120107351,+!p1@POU2F3!1.69!57.02!POU2F3;;chr8:102504651..102504683,+!p1@GRHL2!1.69!47.67!GRHL2;;chr6:50786479..50786490,+!p6@TFAP2B!1.67!46.09!TFAP2B;;chr6:50786414..50786426,+!p7@TFAP2B!1.64!42.42!TFAP2B;;chr10:8096772..8096787,+!p2@GATA3!1.62!47.67!GATA3;;chr6:10419884..10419898,-!p11@TFAP2A!1.60!39.27!TFAP2A;;chr1:61547894..61547968,+!p2@NFIA!1.59!107.49!NFIA;;chr1:201979743..201979762,+!p1@ELF3!1.59!37.52!ELF3;;chr12:54378923..54378966,+!p1@HOXC10!1.57!36.56!HOXC10;;chr14:38064590..38064606,-!p2@FOXA1!1.57!36.47!FOXA1;;chr6:50789717..50789729,+!p4@TFAP2B!1.57!36.21!TFAP2B;;chr17:17726907..17726958,-!p2@SREBF1!1.54!198.01!SREBF1;;chr18:45663490..45663528,-!p2@ZBTB7C!1.54!33.32!ZBTB7C;;chr1:164528687..164528711,+!p6@PBX1!1.53!38.13!PBX1;;chr6:34524049..34524089,-!p2@SPDEF!1.53!32.71!SPDEF;;chrX:66763914..66763933,+!p3@AR!1.53!32.54!AR;;chr1:209979467..209979494,-!p1@IRF6!1.52!36.30!IRF6;;chr6:135502501..135502546,+!p1@MYB!1.48!34.90!MYB;;chr17:53342311..53342400,+!p1@HLF!1.47!32.45!HLF;;chr5:92918919..92918942,+!p1@NR2F1!1.46!121.22!NR2F1;;chr1:164528410..164528428,+!p1@PBX1!1.45!198.53!PBX1;;chr12:54785074..54785122,-!p2@ZNF385A!1.44!39.88!ZNF385A;;chr14:37131058..37131139,+!p1@PAX9!1.44!26.24!PAX9;;chr22:29196433..29196445,-!p4@XBP1!1.43!28.51!XBP1;;chr22:29196547..29196563,-!p2@XBP1!1.42!885.88!XBP1;;chr20:39317868..39317884,-!p1@MAFB!1.42!288.88!MAFB;;chr6:50786529..50786540,+!p8@TFAP2B!1.40!24.23!TFAP2B;;chr7:42276787..42276815,-!p1@GLI3!1.38!60.26!GLI3;;chr16:54320101..54320125,-!p4@IRX3!1.38!32.36!IRX3;;chr12:54379029..54379057,+!p2@HOXC10!1.35!21.25!HOXC10;;chr12:54366975..54367001,+!p1@HOXC11!1.34!20.82!HOXC11;;chr20:55204351..55204377,+!p1@TFAP2C!1.33!25.80!TFAP2C;;chr5:92918768..92918783,+!p8@NR2F1!1.30!18.80!NR2F1;;chr16:54964740..54964789,+!p1@IRX5!1.29!26.33!IRX5;;chr12:54384370..54384382,+!p5@HOXC6!1.29!18.28!HOXC6;;chr12:54785054..54785072,-!p4@ZNF385A!1.28!20.64!ZNF385A;;chr11:34642656..34642667,+!p2@EHF!1.27!17.49!EHF;;chr22:29196492..29196503,-!p3@XBP1!1.25!25.98!XBP1;;chr8:116681123..116681143,-!p4@TRPS1!1.24!31.57!TRPS1;;chr5:92918860..92918871,+!p10@NR2F1!1.24!18.28!NR2F1;;chr6:10419824..10419840,-!p9@TFAP2A!1.24!16.44!TFAP2A;;chr1:24645921..24645973,+!p2@GRHL3!1.24!16.27!GRHL3;;chr14:38064495..38064506,-!p4@FOXA1!1.23!15.83!FOXA1;;chr1:24646002..24646013,+!p3@GRHL3!1.22!15.57!GRHL3;;chr19:45579725..45579743,-!p1@ZNF296!1.21!67.34!ZNF296;;chr2:10091815..10091864,+!p1@GRHL1!1.21!20.12!GRHL1;;chr17:45928521..45928539,-!p1@SP6!1.21!15.13!SP6;;chr7:156803329..156803362,-!p1@MNX1!1.20!14.78!MNX1;;chr1:61548225..61548299,+!p1@NFIA!1.19!187.69!NFIA;;chr1:204042233..204042249,+!p1@SOX13!1.18!87.90!SOX13;;chr7:149470641..149470694,-!p1@ZNF467!1.18!62.88!ZNF467;;chr5:92918894..92918912,+!p2@NR2F1!1.18!46.09!NR2F1;;chr8:116681221..116681236,-!p3@TRPS1!1.18!41.46!TRPS1;;chr19:49864746..49864780,-!p2@TEAD2!1.18!19.50!TEAD2;;chr1:44513995..44514031,+!p1@KLF17!1.18!14.26!KLF17;;chr14:61116183..61116208,-!p1@SIX1!1.17!51.86!SIX1;;chr6:10412392..10412409,-!p4@TFAP2A!1.16!15.22!TFAP2A;;chr19:33793430..33793447,-!p1@CEBPA!1.15!54.75!CEBPA;;chr1:164559556..164559568,+!p21@PBX1!1.15!13.12!PBX1;;chr17:80797886..80797906,-!p1@ZNF750!1.15!13.03!ZNF750;;chr14:105267423..105267443,+!p2@ZBTB42!1.14!12.86!ZBTB42;;chr11:120110863..120110908,+!p2@POU2F3!1.14!12.77!POU2F3;;chr1:164528384..164528409,+!p3@PBX1!1.13!39.18!PBX1;;chr1:164528445..164528459,+!p2@PBX1!1.13!39.01!PBX1;;chrX:66763970..66763981,+!p7@AR!1.13!12.51!AR;;chr1:61547811..61547837,+!p7@NFIA!1.12!17.93!NFIA;;chr5:2751762..2751784,-!p1@IRX2!1.11!11.89!IRX2;;chr1:153940741..153940751,+!p7@CREB3L4!1.10!11.63!CREB3L4;;chr19:45908292..45908374,-!p1@PPP1R13L!1.09!99.62!PPP1R13L;;chr7:42276822..42276895,-!p2@GLI3!1.09!33.58!GLI3;;chr15:96869511..96869525,+!p16@NR2F2!1.09!12.51!NR2F2;;chr6:50789737..50789746,+!p10@TFAP2B!1.09!11.28!TFAP2B;;chr3:71632840..71632857,-!p10@FOXP1!1.08!22.13!FOXP1;;chr14:37132241..37132304,+!p3@PAX9!1.08!11.11!PAX9;;chr12:115121962..115121987,-!p1@TBX3!1.07!89.91!TBX3;;chr8:102504979..102505010,+!p2@GRHL2!1.07!10.85!GRHL2;;chr22:42229210..42229229,+!p3@SREBF2!1.06!25.01!SREBF2;;chr8:116681108..116681120,-!p9@TRPS1!1.06!13.21!TRPS1;;chr22:31739291..31739311,-!p2@PATZ1!1.06!10.41!PATZ1;;chr12:54366949..54366973,+!p3@HOXC11!1.06!10.41!HOXC11;;chr8:116681194..116681214,-!p1@TRPS1!1.05!96.21!TRPS1;;chr1:935398..935465,-!p2@HES4!1.05!21.17!HES4;;chrX:107019163..107019179,-!p7@TSC22D3!1.04!11.63!TSC22D3;;chr17:48045917..48045977,+!p1@DLX4!1.04!9.88!DLX4;;chr17:48072574..48072597,-!p1@DLX3!1.04!9.88!DLX3;;chr1:204042275..204042286,+!p4@SOX13!1.03!15.57!SOX13;;chr5:174151612..174151633,+!p2@MSX2!1.03!9.80!MSX2;;chr12:80084737..80084763,-!p3@PAWR!1.02!35.86!PAWR;;chr10:8100691..8100732,+!p5@GATA3!1.02!9.53!GATA3;;chr12:54380036..54380091,+!p4@HOXC10!1.02!9.53!HOXC10;;chr1:10856639..10856662,-!p2@CASZ1!1.02!9.53!CASZ1;;chr22:31739411..31739446,-!p5@PATZ1!1.02!9.45!PATZ1;;chr18:55102598..55102623,+!p1@ONECUT2!1.02!9.36!ONECUT2;;chr6:10412576..10412599,-!p5@TFAP2A!1.02!9.36!TFAP2A;;chr22:42229246..42229270,+!p2@SREBF2!1.01!117.90!SREBF2;;chr6:10413188..10413249,-!p7@TFAP2A!1.01!9.27!TFAP2A;;chr11:120110844..120110861,+!p3@POU2F3!1.01!9.27!POU2F3;;chr9:14314566..14314618,-!p1@NFIB!1.00!110.90!NFIB;;chr3:71632864..71632885,-!p4@FOXP1!1.00!31.57!FOXP1;;chr5:174151553..174151610,+!p1@MSX2!1.00!15.22!MSX2;;chr16:54320617..54320643,-!p3@IRX3!1.00!11.54!IRX3;;chr2:45236579..45236596,-!p2@SIX2!1.00!9.10!SIX2;;chr11:65554528..65554546,+!p1@OVOL1!1.00!9.10!OVOL1;;chr16:30102849..30102865,-!p2@TBX6!1.00!9.01!TBX6;;chr5:137801160..137801176,+!p1@EGR1!0.99!897.43!EGR1;;chr1:61548069..61548102,+!p3@NFIA!0.99!21.52!NFIA;;chrX:66763815..66763854,+!p2@AR!0.99!11.72!AR;;chr12:52445218..52445237,+!p1@NR4A1!0.98!109.59!NR4A1;;chr3:24536253..24536328,-!p1@THRB!0.98!16.62!THRB;;chr14:38064572..38064584,-!p5@FOXA1!0.98!8.57!FOXA1;;chr12:54332687..54332701,+!p3@HOXC13!0.98!8.48!HOXC13;;chr14:38064536..38064550,-!p7@FOXA1!0.98!8.48!FOXA1;;chr8:116680833..116680881,-!p7@TRPS1!0.97!12.77!TRPS1;;chr16:54320158..54320200,-!p5@IRX3!0.97!11.98!IRX3;;chr17:7197911..7197964,-!p1@YBX2!0.97!8.40!YBX2;;chr11:65554563..65554576,+!p2@OVOL1!0.96!8.22!OVOL1;;chr20:18038521..18038571,-!p1@OVOL2!0.96!8.13!OVOL2;;chr1:201979703..201979721,+!p2@ELF3!0.96!8.05!ELF3;;chr14:75745523..75745537,+!p1@FOS!0.95!983.23!FOS;;chr12:54332652..54332671,+!p2@HOXC13!0.95!7.96!HOXC13;;chrX:66764343..66764362,+!p4@AR!0.95!7.87!AR;;chr2:239148671..239148686,-!p1@HES6!0.94!29.04!HES6;;chr1:8763440..8763460,-!p2@RERE!0.93!39.62!RERE;;chr17:46622440..46622477,-!p5@HOXB2!0.93!8.40!HOXB2;;chr8:102504690..102504704,+!p3@GRHL2!0.93!7.61!GRHL2;;chr10:8097321..8097348,+!p4@GATA3!0.93!7.52!GATA3;;chr13:72441074..72441172,-!p2@DACH1!0.93!7.43!DACH1;;chr2:43453734..43453751,-!p1@ZFP36L2!0.92!817.05!ZFP36L2;;chr1:41827095..41827155,+!p1@FOXO6!0.92!10.15!FOXO6;;chr13:72441506..72441562,-!p3@DACH1!0.92!7.26!DACH1;;chrX:84498989..84499003,+!p1@ZNF711!0.91!9.97!ZNF711;;chr12:54332608..54332636,+!p1@HOXC13!0.91!7.17!HOXC13;;chr1:164528340..164528379,+!p4@PBX1!0.90!17.75!PBX1;;chr6:50786057..50786069,+!p9@TFAP2B!0.90!6.91!TFAP2B;;chrX:107018969..107019024,-!p6@TSC22D3!0.89!9.53!TSC22D3;;chr1:10856665..10856683,-!p4@CASZ1!0.89!6.73!CASZ1;;chr3:128206762..128206781,-!p2@GATA2!0.88!43.29!GATA2;;chr10:8097295..8097320,+!p6@GATA3!0.88!6.65!GATA3;;chr6:10415263..10415274,-!p8@TFAP2A!0.88!6.56!TFAP2A;;chr6:135502472..135502489,+!p3@MYB!0.88!6.56!MYB;;chr16:29819446..29819471,+!p9@MAZ!0.87!19.85!MAZ;;chr12:54378984..54378996,+!p7@HOXC10!0.87!6.38!HOXC10;;chr8:116681150..116681164,-!p5@TRPS1!0.86!12.51!TRPS1;;chr8:116681247..116681261,-!p8@TRPS1!0.86!8.13!TRPS1;;chr12:54367122..54367144,+!p4@HOXC11!0.86!6.30!HOXC11;;chr16:54319010..54319041,-!p8@IRX3!0.86!6.21!IRX3;;chr17:61920023..61920110,-!p1@SMARCD2!0.85!90.17!SMARCD2;;chr7:149470540..149470596,-!p2@ZNF467!0.85!8.22!ZNF467;;chr6:34524025..34524045,-!p3@SPDEF!0.85!6.03!SPDEF;;chr19:49140609..49140643,-!p1@DBP!0.84!35.33!DBP;;chr16:30102828..30102840,-!p5@TBX6!0.84!5.86!TBX6;;chrX:131623044..131623089,-!p1@MBNL3!0.83!25.54!MBNL3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!0.83!5.68!ZBED1;;chr8:116673894..116673913,-!p12@TRPS1!0.83!5.68!TRPS1;;chr12:54367012..54367025,+!p5@HOXC11!0.83!5.68!HOXC11;;chr1:10754477..10754517,-!p1@CASZ1!0.82!9.80!CASZ1;;chr10:22292591..22292606,-!p2@DNAJC1!0.82!9.53!DNAJC1;;chr14:38064307..38064323,-!p3@FOXA1!0.82!5.60!FOXA1;;chr22:29196511..29196541,-!p1@XBP1!0.81!655.51!XBP1;;chr1:204042723..204042784,+!p3@SOX13!0.81!9.53!SOX13;;chr12:48298765..48298783,-!p2@VDR!0.80!11.81!VDR;;chr15:56535922..56535936,-!p5@RFX7!0.80!7.35!RFX7;;chr22:31741725..31741744,-!p6@PATZ1!0.80!5.34!PATZ1;;chr12:54378864..54378884,+!p6@HOXC10!0.80!5.34!HOXC10;;chr1:227751231..227751273,+!p1@ZNF678!0.79!35.42!ZNF678;;chr19:19976683..19976709,+!p1@ZNF253!0.79!24.49!ZNF253;;chr6:50786631..50786635,+!p11@TFAP2B!0.79!5.16!TFAP2B;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+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0008425,UBERON:0010316
 |fonse_cell_line=FF:0100816,FF:0101120
 |fonse_cell_line_closure=FF:0100816,FF:0101120
@@ Line 37: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg38.nobarcode.ctss.bed.gz
 |id=FF:10419-106C5
 |is_a=EFO:0002091;;FF:0000210;;FF:0101908
 |is_obsolete=
+|library_id=CNhs10736
+|library_id_phase_based=2:CNhs10736
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10419
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10419
 |name=breast carcinoma cell line:MDA-MB-453
 |namespace=FANTOM5
@@ Line 45: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10736,LSID691,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=106
 |rna_catalog_number=
@@ Line 60: / Line 78: @@
 |rna_weight_ug=56.42525
 |sample_age=unknown
+|sample_category=cell lines
 |sample_cell_catalog=RCB1192
 |sample_cell_line=MDA-MB-453
@@ Line 81: / Line 100: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10419-106C5;search_select_hide=table117:FF:10419-106C5
 }}

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FF:10419-106C5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:00, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0