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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005250
|DRA_sample_Accession=CAGE@SAMD00005250
|accession_numbers=CAGE;DRX007838;DRR008710;DRZ000135;DRZ001520
|accession_numbers=CAGE;DRX007838;DRR008710;DRZ000135;DRZ001520;DRZ011485;DRZ012870
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0001911,UBERON:0004121,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002365,UBERON:0002530,UBERON:0010317,UBERON:0001443,UBERON:0003100,UBERON:0000915,UBERON:0002330
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0001911,UBERON:0004121,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002365,UBERON:0002530,UBERON:0010317,UBERON:0001443,UBERON:0003100,UBERON:0000915,UBERON:0002330
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002327
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002327
Line 41: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/breast%2520carcinoma%2520cell%2520line%253aMDA-MB-453.CNhs10736.10419-106C5.hg38.nobarcode.ctss.bed.gz
|id=FF:10419-106C5
|id=FF:10419-106C5
|is_a=EFO:0002091;;FF:0000210;;FF:0101908
|is_a=EFO:0002091;;FF:0000210;;FF:0101908
Line 46: Line 51:
|library_id=CNhs10736
|library_id=CNhs10736
|library_id_phase_based=2:CNhs10736
|library_id_phase_based=2:CNhs10736
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10419
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10419
|name=breast carcinoma cell line:MDA-MB-453
|name=breast carcinoma cell line:MDA-MB-453
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 90: Line 100:
|top_motifs=ZEB1:2.28011194717;VSX1,2:2.01107721212;SNAI1..3:1.88524591428;MYOD1:1.82323102979;FOXQ1:1.66527553243;NFY{A,B,C}:1.62709208286;FOXA2:1.56444170504;RBPJ:1.43250354671;TOPORS:1.25961521968;PITX1..3:1.24842663179;LMO2:1.224758103;ARID5B:1.22031706561;FOXN1:1.18199801343;IKZF1:1.1777204515;TEF:1.17227039804;NKX2-3_NKX2-5:1.12979705192;NRF1:1.05496596196;PDX1:1.048657386;FOX{F1,F2,J1}:1.03397694696;POU2F1..3:1.01741560447;CRX:1.00720370089;ELK1,4_GABP{A,B1}:0.992598565314;ONECUT1,2:0.988704007716;ADNP_IRX_SIX_ZHX:0.939679654549;STAT1,3:0.939615811883;HOX{A4,D4}:0.930515466709;bHLH_family:0.923730578444;DBP:0.871090593961;PBX1:0.844880633634;RORA:0.768548655625;SP1:0.737499232985;LHX3,4:0.729955654458;NKX6-1,2:0.637497848816;ZNF143:0.634336161916;FOXP1:0.624261787264;RFX2..5_RFXANK_RFXAP:0.616388584844;ATF2:0.599862685988;SOX{8,9,10}:0.591305974585;TFDP1:0.567472313814;E2F1..5:0.512343527943;PAX6:0.510710344229;STAT5{A,B}:0.509297488732;BREu{core}:0.492147908093;ZFP161:0.443094414153;HIF1A:0.438699136566;ESR1:0.430040582091;MYB:0.407628681176;NFIL3:0.3874969076;OCT4_SOX2{dimer}:0.379289029575;SOX5:0.365683796616;MED-1{core}:0.342193661129;HOX{A5,B5}:0.338252533231;FOXO1,3,4:0.332326649455;NANOG:0.322940710289;YY1:0.287076145953;PAX5:0.259640844094;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.245701913768;GFI1:0.245662521155;PPARG:0.214251838037;ATF6:0.200928152514;PAX8:0.196002848326;TEAD1:0.191351551406;GFI1B:0.174593924613;CDC5L:0.172342806101;EVI1:0.168561841673;FOX{I1,J2}:0.166937923694;TFAP2{A,C}:0.14902499413;AHR_ARNT_ARNT2:0.148347969019;NKX2-1,4:0.129526671513;RFX1:0.10973241821;NR1H4:0.093655652631;NFIX:0.0753380929426;AR:0.0671195149121;HOX{A6,A7,B6,B7}:0.0455346939474;NKX3-2:0.0224283504795;EBF1:0.0156554423561;ZNF148:0.0139413236677;ELF1,2,4:0.00823614441322;IKZF2:0.00249232639879;HNF1A:0.00103261433665;TBX4,5:-0.00201009887516;PAX2:-0.00621210463525;GATA6:-0.00989681053349;TFAP2B:-0.0110227983021;POU5F1:-0.0119769358486;POU1F1:-0.0123887856724;HIC1:-0.0183236648701;LEF1_TCF7_TCF7L1,2:-0.0184658213246;GTF2A1,2:-0.0187483870245;TLX1..3_NFIC{dimer}:-0.0285854106213;ATF4:-0.0333953117394;TBP:-0.038579177632;CUX2:-0.0393637820048;SOX17:-0.0608026954802;ATF5_CREB3:-0.071070587928;FOX{D1,D2}:-0.0748142122254;FOSL2:-0.0873662460824;HNF4A_NR2F1,2:-0.0889870508734;NKX3-1:-0.0904701057517;ZBTB6:-0.11549283717;HAND1,2:-0.11577058907;PAX3,7:-0.120408612832;EP300:-0.134715088365;RXRA_VDR{dimer}:-0.140111808947;FOXM1:-0.140950364601;TP53:-0.144639998968;PRRX1,2:-0.152627667119;MAFB:-0.166357088169;FOXP3:-0.184670722505;HOXA9_MEIS1:-0.191440720065;CDX1,2,4:-0.195147328715;EGR1..3:-0.201990989425;GTF2I:-0.216189106524;MEF2{A,B,C,D}:-0.216520257972;FOS_FOS{B,L1}_JUN{B,D}:-0.221282160922;FOXL1:-0.222663190094;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.233083724835;ESRRA:-0.238259484695;ZIC1..3:-0.244492573509;ALX1:-0.26523429818;HLF:-0.280481265297;ZBTB16:-0.281451400999;XBP1:-0.284914873931;SOX2:-0.289171284065;TAL1_TCF{3,4,12}:-0.306768484546;MTE{core}:-0.322171669979;EN1,2:-0.324151128885;HSF1,2:-0.328403098446;NR5A1,2:-0.329727688879;NFE2L2:-0.341288933266;ZNF423:-0.349485669123;PATZ1:-0.353545906771;NR6A1:-0.362759793435;BACH2:-0.375448588349;TGIF1:-0.400044162389;NANOG{mouse}:-0.406496422916;BPTF:-0.429298135823;DMAP1_NCOR{1,2}_SMARC:-0.433613662254;MTF1:-0.457292811593;JUN:-0.478582880593;SPIB:-0.489102062876;RUNX1..3:-0.49060257009;PAX4:-0.508556328233;NFE2:-0.520250655941;NFKB1_REL_RELA:-0.521074098741;XCPE1{core}:-0.53859280269;MAZ:-0.541535753943;KLF4:-0.543617013585;TLX2:-0.552706439881;HMGA1,2:-0.558640439873;SREBF1,2:-0.590505427143;REST:-0.603658137274;SPI1:-0.613078041451;T:-0.628501953459;CEBPA,B_DDIT3:-0.667221175612;SRF:-0.716445010994;HBP1_HMGB_SSRP1_UBTF:-0.721169033891;ETS1,2:-0.728893149865;RREB1:-0.729958034672;GZF1:-0.737194114191;NHLH1,2:-0.752902662054;TFCP2:-0.756900808627;IRF7:-0.759610279976;ZNF384:-0.782935819642;MYBL2:-0.786303721755;IRF1,2:-0.807655113532;FOXD3:-0.813750753976;UFEwm:-0.836352297951;MYFfamily:-0.840729403708;ALX4:-0.848135663711;HMX1:-0.851906334566;POU3F1..4:-0.89050198281;TFAP4:-0.901846859867;GCM1,2:-0.909361934898;PAX1,9:-0.91482209921;MZF1:-0.923748620471;ZNF238:-0.926609275465;CREB1:-0.956948864159;NR3C1:-1.01894912717;POU6F1:-1.02163415222;GATA4:-1.07851381793;NFATC1..3:-1.18553803971;SPZ1:-1.26270802414;PRDM1:-1.29924626465;AIRE:-1.34774021365;STAT2,4,6:-1.35647724762;NKX2-2,8:-1.4288937926;NFE2L1:-1.51959816569;SMAD1..7,9:-1.54047406471;HES1:-1.92452317903;RXR{A,B,G}:-2.03835033977;GLI1..3:-2.42184901851
|top_motifs=ZEB1:2.28011194717;VSX1,2:2.01107721212;SNAI1..3:1.88524591428;MYOD1:1.82323102979;FOXQ1:1.66527553243;NFY{A,B,C}:1.62709208286;FOXA2:1.56444170504;RBPJ:1.43250354671;TOPORS:1.25961521968;PITX1..3:1.24842663179;LMO2:1.224758103;ARID5B:1.22031706561;FOXN1:1.18199801343;IKZF1:1.1777204515;TEF:1.17227039804;NKX2-3_NKX2-5:1.12979705192;NRF1:1.05496596196;PDX1:1.048657386;FOX{F1,F2,J1}:1.03397694696;POU2F1..3:1.01741560447;CRX:1.00720370089;ELK1,4_GABP{A,B1}:0.992598565314;ONECUT1,2:0.988704007716;ADNP_IRX_SIX_ZHX:0.939679654549;STAT1,3:0.939615811883;HOX{A4,D4}:0.930515466709;bHLH_family:0.923730578444;DBP:0.871090593961;PBX1:0.844880633634;RORA:0.768548655625;SP1:0.737499232985;LHX3,4:0.729955654458;NKX6-1,2:0.637497848816;ZNF143:0.634336161916;FOXP1:0.624261787264;RFX2..5_RFXANK_RFXAP:0.616388584844;ATF2:0.599862685988;SOX{8,9,10}:0.591305974585;TFDP1:0.567472313814;E2F1..5:0.512343527943;PAX6:0.510710344229;STAT5{A,B}:0.509297488732;BREu{core}:0.492147908093;ZFP161:0.443094414153;HIF1A:0.438699136566;ESR1:0.430040582091;MYB:0.407628681176;NFIL3:0.3874969076;OCT4_SOX2{dimer}:0.379289029575;SOX5:0.365683796616;MED-1{core}:0.342193661129;HOX{A5,B5}:0.338252533231;FOXO1,3,4:0.332326649455;NANOG:0.322940710289;YY1:0.287076145953;PAX5:0.259640844094;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.245701913768;GFI1:0.245662521155;PPARG:0.214251838037;ATF6:0.200928152514;PAX8:0.196002848326;TEAD1:0.191351551406;GFI1B:0.174593924613;CDC5L:0.172342806101;EVI1:0.168561841673;FOX{I1,J2}:0.166937923694;TFAP2{A,C}:0.14902499413;AHR_ARNT_ARNT2:0.148347969019;NKX2-1,4:0.129526671513;RFX1:0.10973241821;NR1H4:0.093655652631;NFIX:0.0753380929426;AR:0.0671195149121;HOX{A6,A7,B6,B7}:0.0455346939474;NKX3-2:0.0224283504795;EBF1:0.0156554423561;ZNF148:0.0139413236677;ELF1,2,4:0.00823614441322;IKZF2:0.00249232639879;HNF1A:0.00103261433665;TBX4,5:-0.00201009887516;PAX2:-0.00621210463525;GATA6:-0.00989681053349;TFAP2B:-0.0110227983021;POU5F1:-0.0119769358486;POU1F1:-0.0123887856724;HIC1:-0.0183236648701;LEF1_TCF7_TCF7L1,2:-0.0184658213246;GTF2A1,2:-0.0187483870245;TLX1..3_NFIC{dimer}:-0.0285854106213;ATF4:-0.0333953117394;TBP:-0.038579177632;CUX2:-0.0393637820048;SOX17:-0.0608026954802;ATF5_CREB3:-0.071070587928;FOX{D1,D2}:-0.0748142122254;FOSL2:-0.0873662460824;HNF4A_NR2F1,2:-0.0889870508734;NKX3-1:-0.0904701057517;ZBTB6:-0.11549283717;HAND1,2:-0.11577058907;PAX3,7:-0.120408612832;EP300:-0.134715088365;RXRA_VDR{dimer}:-0.140111808947;FOXM1:-0.140950364601;TP53:-0.144639998968;PRRX1,2:-0.152627667119;MAFB:-0.166357088169;FOXP3:-0.184670722505;HOXA9_MEIS1:-0.191440720065;CDX1,2,4:-0.195147328715;EGR1..3:-0.201990989425;GTF2I:-0.216189106524;MEF2{A,B,C,D}:-0.216520257972;FOS_FOS{B,L1}_JUN{B,D}:-0.221282160922;FOXL1:-0.222663190094;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.233083724835;ESRRA:-0.238259484695;ZIC1..3:-0.244492573509;ALX1:-0.26523429818;HLF:-0.280481265297;ZBTB16:-0.281451400999;XBP1:-0.284914873931;SOX2:-0.289171284065;TAL1_TCF{3,4,12}:-0.306768484546;MTE{core}:-0.322171669979;EN1,2:-0.324151128885;HSF1,2:-0.328403098446;NR5A1,2:-0.329727688879;NFE2L2:-0.341288933266;ZNF423:-0.349485669123;PATZ1:-0.353545906771;NR6A1:-0.362759793435;BACH2:-0.375448588349;TGIF1:-0.400044162389;NANOG{mouse}:-0.406496422916;BPTF:-0.429298135823;DMAP1_NCOR{1,2}_SMARC:-0.433613662254;MTF1:-0.457292811593;JUN:-0.478582880593;SPIB:-0.489102062876;RUNX1..3:-0.49060257009;PAX4:-0.508556328233;NFE2:-0.520250655941;NFKB1_REL_RELA:-0.521074098741;XCPE1{core}:-0.53859280269;MAZ:-0.541535753943;KLF4:-0.543617013585;TLX2:-0.552706439881;HMGA1,2:-0.558640439873;SREBF1,2:-0.590505427143;REST:-0.603658137274;SPI1:-0.613078041451;T:-0.628501953459;CEBPA,B_DDIT3:-0.667221175612;SRF:-0.716445010994;HBP1_HMGB_SSRP1_UBTF:-0.721169033891;ETS1,2:-0.728893149865;RREB1:-0.729958034672;GZF1:-0.737194114191;NHLH1,2:-0.752902662054;TFCP2:-0.756900808627;IRF7:-0.759610279976;ZNF384:-0.782935819642;MYBL2:-0.786303721755;IRF1,2:-0.807655113532;FOXD3:-0.813750753976;UFEwm:-0.836352297951;MYFfamily:-0.840729403708;ALX4:-0.848135663711;HMX1:-0.851906334566;POU3F1..4:-0.89050198281;TFAP4:-0.901846859867;GCM1,2:-0.909361934898;PAX1,9:-0.91482209921;MZF1:-0.923748620471;ZNF238:-0.926609275465;CREB1:-0.956948864159;NR3C1:-1.01894912717;POU6F1:-1.02163415222;GATA4:-1.07851381793;NFATC1..3:-1.18553803971;SPZ1:-1.26270802414;PRDM1:-1.29924626465;AIRE:-1.34774021365;STAT2,4,6:-1.35647724762;NKX2-2,8:-1.4288937926;NFE2L1:-1.51959816569;SMAD1..7,9:-1.54047406471;HES1:-1.92452317903;RXR{A,B,G}:-2.03835033977;GLI1..3:-2.42184901851
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10419-106C5;search_select_hide=table117:FF:10419-106C5
}}
}}

Latest revision as of 14:00, 3 June 2020

Name:breast carcinoma cell line:MDA-MB-453
Species:Human (Homo sapiens)
Library ID:CNhs10736
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebreast
dev stageNA
sexfemale
ageunknown
cell typeunclassifiable
cell lineMDA-MB-453
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005250
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10736 CAGE DRX007838 DRR008710
Accession ID Hg19

Library idBAMCTSS
CNhs10736 DRZ000135 DRZ001520
Accession ID Hg38

Library idBAMCTSS
CNhs10736 DRZ011485 DRZ012870
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0332
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0.842
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.237
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.108
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0749
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0.0364
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0856
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.215
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.101
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0577
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.158
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0364
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0109
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0304
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.136
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10736

Jaspar motifP-value
MA0002.20.00873
MA0003.10.271
MA0004.10.679
MA0006.10.462
MA0007.10.533
MA0009.10.964
MA0014.10.0396
MA0017.10.0971
MA0018.20.992
MA0019.10.983
MA0024.16.86553e-4
MA0025.10.0998
MA0027.10.745
MA0028.13.45304e-4
MA0029.10.129
MA0030.10.247
MA0031.10.0831
MA0035.20.656
MA0038.10.00517
MA0039.20.00801
MA0040.10.77
MA0041.10.53
MA0042.10.577
MA0043.10.673
MA0046.10.0316
MA0047.23.79081e-5
MA0048.10.531
MA0050.16.25861e-7
MA0051.10.004
MA0052.10.125
MA0055.10.00229
MA0057.10.938
MA0058.10.546
MA0059.10.54
MA0060.11.36706e-17
MA0061.19.25525e-5
MA0062.20.00244
MA0065.20.617
MA0066.10.152
MA0067.10.607
MA0068.10.626
MA0069.10.62
MA0070.10.163
MA0071.10.792
MA0072.10.0166
MA0073.10.864
MA0074.10.308
MA0076.11.92676e-4
MA0077.10.666
MA0078.10.831
MA0079.20.198
MA0080.22.69579e-7
MA0081.10.0179
MA0083.10.0098
MA0084.10.145
MA0087.10.854
MA0088.10.881
MA0090.10.959
MA0091.10.0732
MA0092.10.13
MA0093.10.603
MA0099.24.2499e-8
MA0100.10.174
MA0101.10.00741
MA0102.20.155
MA0103.12.64162e-7
MA0104.20.106
MA0105.18.54877e-6
MA0106.10.127
MA0107.10.00212
MA0108.20.664
MA0111.10.791
MA0112.20.148
MA0113.10.939
MA0114.10.899
MA0115.10.836
MA0116.10.0193
MA0117.10.691
MA0119.10.995
MA0122.10.74
MA0124.10.343
MA0125.10.0139
MA0131.10.0329
MA0135.10.36
MA0136.10.00112
MA0137.20.262
MA0138.20.129
MA0139.10.678
MA0140.10.8
MA0141.10.331
MA0142.10.509
MA0143.10.07
MA0144.10.222
MA0145.10.686
MA0146.10.222
MA0147.10.0845
MA0148.12.41986e-5
MA0149.10.699
MA0150.10.00145
MA0152.10.871
MA0153.10.772
MA0154.10.0217
MA0155.10.101
MA0156.10.0782
MA0157.10.791
MA0159.10.671
MA0160.10.984
MA0162.10.283
MA0163.10.00441
MA0164.10.431
MA0258.10.506
MA0259.10.0431



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10736

Novel motifP-value
10.77
100.471
1000.679
1010.392
1020.919
1030.072
1040.472
1050.949
1060.00551
1070.0446
1080.975
1090.739
110.374
1100.65
1110.528
1120.146
1130.0462
1140.231
1150.205
1160.23
1170.246
1180.28
1190.959
120.721
1200.653
1210.213
1220.0881
1230.277
1240.097
1250.243
1260.969
1270.775
1280.0255
1290.887
130.113
1300.357
1310.164
1320.221
1330.277
1340.818
1350.147
1360.0977
1370.317
1380.225
1390.88
140.757
1400.144
1410.911
1420.817
1430.168
1440.0441
1450.189
1460.725
1470.334
1480.223
1490.114
150.704
1500.948
1510.287
1520.0454
1530.705
1540.882
1550.135
1560.17
1570.821
1580.971
1590.903
160.189
1600.23
1610.824
1620.761
1630.311
1640.875
1650.649
1660.0119
1670.944
1680.00152
1690.675
170.999
180.0347
190.211
20.253
200.259
210.415
220.515
230.0523
240.571
250.608
260.811
270.78
280.603
290.261
30.244
300.547
310.337
320.0588
330.93
340.134
350.254
360.529
370.0785
380.573
390.746
40.582
400.634
410.0741
420.761
430.0918
440.183
450.966
460.244
470.904
480.892
490.536
50.373
500.889
510.685
520.222
530.725
540.672
550.473
560.494
570.858
580.435
590.0158
60.313
600.077
610.614
620.115
630.937
640.99
650.258
660.00362
670.224
680.0612
690.515
70.874
700.255
710.449
720.341
730.224
740.18
750.203
760.893
770.237
780.57
790.0132
80.122
800.193
810.101
820.0547
830.469
840.912
850.0517
860.658
870.168
880.614
890.268
90.106
900.162
910.179
920.0797
930.411
940.318
950.315
960.0784
970.622
980.253
990.692



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10736


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002327 (mammary gland epithelial cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
5093 (thoracic cancer)
305 (carcinoma)
1612 (breast cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0001911 (mammary gland)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002365 (exocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0001443 (chest)
0003100 (female organism)
0000915 (thoracic segment of trunk)
0002330 (exocrine system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100816 (breast cell line sample)
0104086 (mammary gland tumor cell line sample)
0100356 (breast cancer cell line sample)
0103568 (mammary gland cell line sample)
0101908 (MDA-MB-453 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0008425 (mammary ridge)
UBERON:0010316 (germ layer / neural crest)

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