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{{f5samples
{{f5samples
|id=FF:10436-106E4
|DRA_sample_Accession=CAGE@SAMD00005478
|name=signet ring carcinoma cell line:Kato III
|HumanCAGEScanFiles=NCig10057;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.NCig10057.10436-106E4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.NCig10057.10436-106E4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.NCig10057.10436-106E4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.NCig10057.10436-106E4.hg19.GCTATA.pairs.bed.gz
|sample_id=10436
|accession_numbers=CAGE;DRX008002;DRR008874;DRZ000299;DRZ001684;DRZ011649;DRZ013034
|rna_tube_id=106E4
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000945,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041
|rna_box=106
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002178
|rna_position=E4
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299,DOID:3119,DOID:3493
|sample_cell_lot=
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100787,FF:0101092
|sample_cell_catalog=RCB2088
|comment=
|sample_company=RIKEN Bioresource centre
|created_by=
|rna_lot_number=
|creation_date=
|rna_catalog_number=
|data_phase=2
|sample_species=Human (Homo sapiens)
|datafreeze_phase=2
|sample_strain=
|def=
|sample_dev_stage=
|expression_enrichment_score=chr6:1312325..1312340,+!p1@FOXQ1!2.23!266.38!FOXQ1;;chr11:34642612..34642646,+!p1@EHF!2.19!154.88!EHF;;chr13:73633131..73633149,+!p1@KLF5!1.72!518.04!KLF5;;chr1:201979743..201979762,+!p1@ELF3!1.72!51.23!ELF3;;chr11:34645791..34645836,+!p3@EHF!1.58!36.90!EHF;;chr21:36421535..36421610,-!p2@RUNX1!1.52!110.52!RUNX1;;chr11:34642656..34642667,+!p2@EHF!1.51!31.60!EHF;;chr19:1753498..1753519,+!p1@ONECUT3!1.51!31.31!ONECUT3;;chr17:70117153..70117174,+!p1@SOX9!1.50!304.17!SOX9;;chr7:63505799..63505904,+!p1@ZNF727!1.47!28.27!ZNF727;;chr17:46675558..46675577,-!p2@HOXB6!1.42!25.42!HOXB6;;chr3:12330560..12330579,+!p1@PPARG!1.40!27.87!PPARG;;chr6:106546808..106546833,+!p3@PRDM1!1.38!28.86!PRDM1;;chr1:209979467..209979494,-!p1@IRF6!1.37!25.32!IRF6;;chr17:46622440..46622477,-!p5@HOXB2!1.33!22.87!HOXB2;;chr19:50432453..50432468,+!p1@ATF5!1.28!982.19!ATF5;;chr1:214161272..214161322,+!p1@PROX1!1.25!23.75!PROX1;;chr1:201979703..201979721,+!p2@ELF3!1.25!16.78!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.25!16.59!GRHL2;;chr20:42984330..42984364,+!p2@HNF4A!1.23!16.10!HNF4A;;chr12:54378923..54378966,+!p1@HOXC10!1.19!14.43!HOXC10;;chr11:2292226..2292270,-!p1@ASCL2!1.18!14.13!ASCL2;;chr17:41622765..41622821,-!p2@ETV4!1.17!21.10!ETV4;;chr17:46667594..46667619,-!p1@HOXB3!1.14!12.96!HOXB3;;chr3:181429704..181429722,+!p1@SOX2!1.14!12.96!SOX2;;chr17:46682321..46682362,-!p1@HOXB6!1.13!12.56!HOXB6;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.13!12.37!ZNF676;;chr11:61520075..61520136,+!p1@C11orf9!1.12!25.81!C11orf9;;chr18:45663490..45663528,-!p2@ZBTB7C!1.12!12.27!ZBTB7C;;chr17:41623692..41623715,-!p1@ETV4!1.11!50.35!ETV4;;chr5:134369905..134369972,-!p1@PITX1!1.09!17.37!PITX1;;chr11:65667846..65667868,-!p1@FOSL1!1.07!287.29!FOSL1;;chr17:46675420..46675465,-!p3@HOXB6!1.07!12.56!HOXB6;;chr12:54380404..54380433,+!p3@HOXC10!1.06!10.60!HOXC10;;chr17:41622925..41622976,-!p3@ETV4!1.05!15.51!ETV4;;chr17:46687959..46688007,-!p2@HOXB7!1.05!14.33!HOXB7;;chr8:76319876..76319926,+!p1@HNF4G!1.05!10.21!HNF4G;;chr11:34535297..34535317,-!p1@ELF5!1.05!10.21!ELF5;;chr17:46667628..46667642,-!p2@HOXB3!1.02!9.52!HOXB3;;chr2:122042770..122042785,-!p1@TFCP2L1!1.02!9.52!TFCP2L1;;chr5:174151612..174151633,+!p2@MSX2!1.01!9.32!MSX2;;chr12:54393880..54393962,+!p1@HOXC9!1.01!9.23!HOXC9;;chr3:181429741..181429767,+!p2@SOX2!1.01!9.13!SOX2;;chr1:23857698..23857733,-!p1@E2F2!1.00!16.88!E2F2;;chr17:46622205..46622218,-!p3@HOXB2!1.00!10.40!HOXB2;;chr8:11561684..11561751,+!p1@GATA4!0.99!8.83!GATA4;;chr20:22564895..22564910,-!p1@FOXA2!0.99!8.74!FOXA2;;chr12:52445218..52445237,+!p1@NR4A1!0.98!111.79!NR4A1;;chr19:22193731..22193751,-!p1@ZNF208!0.98!8.64!ZNF208;;chr3:32023232..32023273,+!p1@ZNF860!0.97!12.07!ZNF860;;chr20:18038521..18038571,-!p1@OVOL2!0.97!8.24!OVOL2;;chr9:110252035..110252057,-!p1@KLF4!0.96!134.27!KLF4;;chr5:174151553..174151610,+!p1@MSX2!0.96!13.84!MSX2;;chr20:50159198..50159299,-!p1@NFATC2!0.95!11.68!NFATC2;;chr7:156803329..156803362,-!p1@MNX1!0.95!7.85!MNX1;;chr6:126102292..126102329,+!p3@NCOA7!0.94!26.50!NCOA7;;chr6:106546731..106546755,+!p5@PRDM1!0.92!7.36!PRDM1;;chr16:85932760..85932775,+!p1@IRF8!0.92!7.36!IRF8;;chr5:134369879..134369898,-!p2@PITX1!0.91!7.16!PITX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.90!6.97!HOXC5;;chr6:36355431..36355466,-!p1@ETV7!0.89!6.67!ETV7;;chr11:65667884..65667895,-!p2@FOSL1!0.88!26.80!FOSL1;;chr12:54366894..54366922,+!p2@HOXC11!0.87!6.48!HOXC11;;chr6:106546786..106546802,+!p6@PRDM1!0.87!6.48!PRDM1;;chr11:34535332..34535347,-!p2@ELF5!0.87!6.38!ELF5;;chr21:38071430..38071456,+!p1@SIM2!0.87!6.38!SIM2;;chr17:46622229..46622257,-!p6@HOXB2!0.86!7.46!HOXB2;;chr1:2985760..2985774,+!p1@PRDM16!0.86!6.28!PRDM16;;chr18:19749541..19749557,+!p1@GATA6!0.85!20.22!GATA6;;chr13:73636252..73636307,+!p2@KLF5!0.85!7.26!KLF5;;chr12:77459306..77459365,-!p1@E2F7!0.84!79.89!E2F7;;chr6:31126291..31126399,+!p1@TCF19!0.84!59.58!TCF19;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.99!TBX20;;chr14:75988771..75988826,+!p1@BATF!0.83!7.95!BATF;;chr13:73636516..73636532,+!p3@KLF5!0.83!6.58!KLF5;;chr6:28048343..28048354,+!p1@ZNF165!0.83!5.79!ZNF165;;chr12:54380036..54380091,+!p4@HOXC10!0.82!5.59!HOXC10;;chr18:56532100..56532130,+!p1@ZNF532!0.81!10.60!ZNF532;;chr12:54367122..54367144,+!p4@HOXC11!0.81!5.50!HOXC11;;chr12:2986275..2986363,-!p1@FOXM1!0.80!57.32!FOXM1;;chr17:41622834..41622883,-!p6@ETV4!0.80!6.48!ETV4;;chr6:10412392..10412409,-!p4@TFAP2A!0.80!6.09!TFAP2A;;chr7:17338266..17338282,+!p1@AHR!0.79!60.85!AHR;;chr6:36355513..36355578,-!p2@ETV7!0.79!6.58!ETV7;;chr1:2461692..2461710,-!p1@HES5!0.79!5.20!HES5;;chr13:28494130..28494168,+!p1@PDX1!0.79!5.20!PDX1;;chr12:80084737..80084763,-!p3@PAWR!0.78!20.32!PAWR;;chr12:57914286..57914304,-!p1@DDIT3!0.77!196.30!DDIT3;;chr10:114710098..114710130,+!p2@TCF7L2!0.77!40.63!TCF7L2;;chr11:64764435..64764449,-!p1@BATF2!0.77!6.97!BATF2;;chr20:51588873..51588953,+!p1@TSHZ2!0.77!6.67!TSHZ2;;chr22:38597987..38598021,+!p2@MAFF!0.76!31.90!MAFF;;chr17:41277372..41277418,-!p1@BRCA1!0.76!18.75!BRCA1;;chr12:54366975..54367001,+!p1@HOXC11!0.76!4.71!HOXC11;;chr17:46622070..46622109,-!p1@HOXB2!0.75!10.99!HOXB2;;chr19:50435736..50435781,+!p3@ATF5!0.75!6.67!ATF5;;chr13:73636621..73636647,+!p4@KLF5!0.75!4.61!KLF5;;chr17:46675469..46675481,-!p4@HOXB6!0.75!4.61!HOXB6;;chr22:42229246..42229270,+!p2@SREBF2!0.74!62.72!SREBF2;;chr2:239148671..239148686,-!p1@HES6!0.74!18.06!HES6;;chr20:18037473..18037494,-!p3@OVOL2!0.74!4.51!OVOL2;;chr6:106546834..106546850,+!p4@PRDM1!0.74!4.51!PRDM1;;chr3:185826855..185826911,-!p1@ETV5!0.73!134.37!ETV5;;chr12:2986206..2986258,-!p2@FOXM1!0.73!29.35!FOXM1;;chr7:17338324..17338341,+!p3@AHR!0.73!16.10!AHR;;chr6:1312155..1312187,+!p2@FOXQ1!0.73!4.42!FOXQ1;;chr1:10856694..10856715,-!p3@CASZ1!0.73!4.42!CASZ1;;chr1:209979411..209979433,-!p2@IRF6!0.73!4.42!IRF6;;chr17:41622731..41622764,-!p5@ETV4!0.73!4.32!ETV4;;chr17:7197911..7197964,-!p1@YBX2!0.73!4.32!YBX2;;chr6:126102254..126102289,+!p5@NCOA7!0.72!12.76!NCOA7;;chr17:46621937..46621966,-!p2@HOXB2!0.72!12.47!HOXB2;;chr6:10415484..10415508,-!p3@TFAP2A!0.72!4.22!TFAP2A;;chr6:87923426..87923456,+!p13@ZNF292!0.72!4.22!ZNF292;;chr17:36105042..36105060,-!p1@HNF1B!0.70!4.02!HNF1B;;chr17:46675539..46675551,-!p7@HOXB6!0.69!3.93!HOXB6;;chr13:41593425..41593480,-!p1@ELF1!0.68!27.38!ELF1;;chr14:38064429..38064486,-!p1@FOXA1!0.68!3.83!FOXA1;;chr19:46367576..46367592,+!p1@FOXA3!0.68!3.83!FOXA3;;chr6:10413188..10413249,-!p7@TFAP2A!0.68!3.83!TFAP2A;;chr17:46703942..46703964,-!p4@HOXB9!0.67!3.73!HOXB9;;chr11:34643638..34643667,+!p8@EHF!0.67!3.73!EHF;;chr12:54379136..54379150,+!p4@HOXC5!0.67!3.73!HOXC5;;chr12:54379029..54379057,+!p2@HOXC10!0.67!3.63!HOXC10;;chr17:46806067..46806097,-!p1@HOXB13!0.67!3.63!HOXB13;;chr1:10856639..10856662,-!p2@CASZ1!0.67!3.63!CASZ1;;chr2:171571931..171571959,+!p3@SP5!0.67!3.63!SP5;;chr17:46675619..46675642,-!p5@HOXB6!0.66!3.53!HOXB6;;chr19:13135582..13135600,+!p3@NFIX!0.66!3.53!NFIX;;chr12:54366949..54366973,+!p3@HOXC11!0.66!3.53!HOXC11;;chr6:106534230..106534254,+!p2@PRDM1!0.65!9.72!PRDM1;;chr1:43148855..43148908,+!p4@YBX1!0.65!5.79!YBX1;;chr17:46622114..46622138,-!p4@HOXB2!0.65!5.69!HOXB2;;chr12:66218003..66218018,+!p9@HMGA2!0.65!4.42!HMGA2;;chr17:36105074..36105086,-!p2@HNF1B!0.65!3.44!HNF1B;;chr13:45010939..45011033,-!p1@TSC22D1!0.64!260.20!TSC22D1;;chr7:148581327..148581347,-!p2@EZH2!0.64!12.96!EZH2;;chr22:42229210..42229229,+!p3@SREBF2!0.64!8.74!SREBF2;;chr3:14058794..14058815,+!p1@TPRXL!0.64!3.34!TPRXL;;chr13:27998831..27998851,+!p2@GTF3A!0.63!22.77!GTF3A;;chr19:19729477..19729542,-!p1@PBX4!0.63!7.75!PBX4;;chr1:10754477..10754517,-!p1@CASZ1!0.63!5.89!CASZ1;;chr8:41508327..41508355,-!p1@NKX6-3!0.63!3.24!NKX6-3;;chr3:141087393..141087426,+!p3@ZBTB38!0.62!14.82!ZBTB38;;chr19:21203481..21203504,+!p2@ZNF430!0.62!8.34!ZNF430;;chr1:2985726..2985752,+!p2@PRDM16!0.62!3.14!PRDM16;;chr11:2291814..2291825,-!p2@ASCL2!0.62!3.14!ASCL2;;chr8:102504690..102504704,+!p3@GRHL2!0.62!3.14!GRHL2;;chr6:34204921..34204939,+!p3@HMGA1!0.61!111.60!HMGA1;;chr3:141087339..141087387,+!p2@ZBTB38!0.61!37.89!ZBTB38;;chr9:99180617..99180658,-!p1@ZNF367!0.61!7.66!ZNF367;;chr17:79885633..79885645,-!p4@MAFG!0.61!5.59!MAFG;;chr9:110250697..110250738,-!p2@KLF4!0.61!3.73!KLF4;;chr11:19263160..19263176,-!p1@E2F8!0.61!3.73!E2F8;;chr13:45009301..45009320,-!p7@TSC22D1!0.61!3.04!TSC22D1;;chr17:46132044..46132080,+!p4@NFE2L1!0.61!3.04!NFE2L1;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.04!HOXB7;;chr17:46688334..46688385,-!p1@HOXB7!0.60!4.61!HOXB7;;chr1:151804244..151804310,-!p1@RORC!0.60!2.94!RORC;;chr5:131826457..131826514,-!p1@IRF1!0.59!139.57!IRF1;;chr7:148581360..148581425,-!p1@EZH2!0.59!17.18!EZH2;;chr1:158985493..158985535,+!p4@IFI16!0.59!4.81!IFI16;;chr14:37131058..37131139,+!p1@PAX9!0.59!2.85!PAX9;;chr5:133450458..133450469,+!p4@TCF7!0.59!2.85!TCF7;;chr20:32274179..32274213,-!p1@E2F1!0.58!22.48!E2F1;;chr2:238600933..238600985,+!p3@LRRFIP1!0.58!18.16!LRRFIP1;;chr6:106534192..106534224,+!p1@PRDM1!0.58!9.13!PRDM1;;chr17:79885537..79885554,-!p2@MAFG!0.58!5.99!MAFG;;chr20:32274150..32274166,-!p2@E2F1!0.58!5.79!E2F1;;chr19:22817119..22817145,+!p1@ZNF492!0.58!5.20!ZNF492;;chr12:3068544..3068597,+!p1@TEAD4!0.57!20.02!TEAD4;;chr5:76383070..76383117,-!p3@ZBED3!0.57!6.18!ZBED3;;chr17:38020392..38020477,-!p1@IKZF3!0.57!2.75!IKZF3;;chr6:34204672..34204692,+!p1@HMGA1!0.56!373.27!HMGA1;;chr12:54772960..54773015,-!p3@ZNF385A!0.56!15.41!ZNF385A;;chr5:133450365..133450444,+!p1@TCF7!0.56!14.72!TCF7;;chr1:23857325..23857416,-!p2@E2F2!0.56!3.24!E2F2;;chr20:22565370..22565388,-!p2@FOXA2!0.56!2.65!FOXA2;;chr7:57509877..57509895,+!p1@ZNF716!0.56!2.65!ZNF716;;chr3:12329397..12329433,+!p2@PPARG!0.55!6.67!PPARG;;chr3:185784049..185784050,-!p7@ETV5!0.55!2.55!ETV5;;chr4:38665810..38665827,+!p1@KLF3!0.54!45.84!KLF3;;chr3:52001448..52001478,-!p2@PCBP4!0.54!43.78!PCBP4;;chrX:46404811..46404869,-!p1@ZNF674!0.54!11.09!ZNF674;;chr2:46524897..46524911,+!p2@EPAS1!0.54!8.24!EPAS1;;chr5:76383133..76383186,-!p2@ZBED3!0.54!5.89!ZBED3;;chr19:22235279..22235301,+!p1@ZNF257!0.54!5.3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|sample_tissue=stomach
|ffid_belonging_in_development=CL:0000223,UBERON:0002532,UBERON:0006595,UBERON:0010316
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=1.36
|rna_od260/280=2.12
|sample_cell_type=unclassifiable
|sample_cell_line=Kato III
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=signet ring carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=21.48075
|rna_concentration=0.85923
|sample_note=machine failed, remainder reloaded, low amount
|profile_hcage=CNhs10753,LSID692,release008,COMPLETED
|profile_cagescan=NCig10057,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000945,UBERON:0001007,UBERON:0001041,UBERON:0001062,UBERON:0001555,UBERON:0002050,UBERON:0002532,UBERON:0003104,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005409,UBERON:0005423,UBERON:0007026,UBERON:0009142
|ancestors_in_disease_facet=DOID:0050686,DOID:0050687,DOID:14566,DOID:162,DOID:299,DOID:305,DOID:3119,DOID:3493,DOID:4
|sample_description=
|fonse_cell_line=FF:0100787,FF:0101120
|fonse_cell_line=FF:0100787,FF:0101120
|fonse_cell_line_closure=FF:0100787,FF:0101120
|fonse_cell_line_closure=FF:0100787,FF:0101120
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/signet%2520ring%2520carcinoma%2520cell%2520line%253aKato%2520III.CNhs10753.10436-106E4.hg38.nobarcode.ctss.bed.gz
|id=FF:10436-106E4
|is_a=DOID:3493;;EFO:0002091;;FF:0000210;;FF:0101092
|is_obsolete=
|library_id=CNhs10753
|library_id_phase_based=2:CNhs10753
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10436
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10436
|name=signet ring carcinoma cell line:Kato III
|namespace=FANTOM5
|part_of=
|profile_cagescan=NCig10057,,,
|profile_hcage=CNhs10753,LSID692,release008,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0.020330879149429,0,0,0,0,-0.0164913478271008,0.112085514980729,-0.234171539907232,-0.262072681427513,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.11266125204957,0,0,0,0.020330879149429,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.12019705332141,0,0,0,0,0,0,0,0,0.65336596382005,0,0,0,0,0,-0.0810027456015433,0,-0.0969923612426051,0,0,-0.0195033548587919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.195408352872938,0.0867025791544045,0,0,-0.0584468268118252,0.0222714718670672,0,0,0.020330879149429,0,-0.0573735929388484,-0.118146321651466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232499804584635,0,0,0,-0.125576014121094,-0.187850707253185,0,0,0,0,0,0.0406617582988581
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|rna_box=106
|rna_catalog_number=
|rna_concentration=0.85923
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.36
|rna_od260/280=2.12
|rna_position=E4
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=1.06E+06
|rna_weight_ug=21.48075
|sample_age=
|sample_category=cell lines
|sample_cell_catalog=RCB2088
|sample_cell_line=Kato III
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=signet ring carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.89538593158501e-242!GO:0043231;intracellular membrane-bound organelle;1.53457243478899e-195!GO:0043227;membrane-bound organelle;3.49316183705476e-195!GO:0043226;organelle;4.18504124794464e-191!GO:0043229;intracellular organelle;7.8870427426606e-191!GO:0005737;cytoplasm;1.24653446986394e-184!GO:0044422;organelle part;3.70229847252644e-161!GO:0044446;intracellular organelle part;8.47638063197903e-160!GO:0044444;cytoplasmic part;5.96643655519592e-133!GO:0032991;macromolecular complex;6.77140681340019e-106!GO:0030529;ribonucleoprotein complex;3.3807269227304e-85!GO:0044237;cellular metabolic process;3.87056856414516e-83!GO:0003723;RNA binding;5.56463672717985e-80!GO:0044428;nuclear part;4.74577177361568e-79!GO:0044238;primary metabolic process;6.72700388780263e-78!GO:0005634;nucleus;1.06572502566744e-75!GO:0043233;organelle lumen;1.76486484904184e-75!GO:0031974;membrane-enclosed lumen;1.76486484904184e-75!GO:0005739;mitochondrion;1.73418815518731e-74!GO:0043170;macromolecule metabolic process;4.9656476753033e-72!GO:0005515;protein binding;6.68007898417302e-61!GO:0043234;protein complex;3.09397349317029e-55!GO:0031090;organelle membrane;9.77490795182744e-55!GO:0006396;RNA processing;3.60244896804022e-54!GO:0044429;mitochondrial part;3.78936322428814e-49!GO:0005840;ribosome;6.79118827428536e-49!GO:0006412;translation;1.04218703604103e-47!GO:0019538;protein metabolic process;1.28471177013165e-45!GO:0031981;nuclear lumen;3.07393526333718e-45!GO:0031967;organelle envelope;9.15037309497497e-45!GO:0031975;envelope;2.24282437999301e-44!GO:0015031;protein transport;9.21308632329566e-44!GO:0016043;cellular component organization and biogenesis;6.52236755577417e-43!GO:0016071;mRNA metabolic process;1.62548395175638e-42!GO:0033036;macromolecule localization;2.19372925806208e-42!GO:0044267;cellular protein metabolic process;6.10743626092472e-42!GO:0003735;structural constituent of ribosome;1.75699268679862e-41!GO:0043283;biopolymer metabolic process;5.72843473108709e-40!GO:0044260;cellular macromolecule metabolic process;5.98753729018924e-40!GO:0045184;establishment of protein localization;9.78504444408299e-40!GO:0008380;RNA splicing;3.92116273844732e-39!GO:0008104;protein localization;1.24665232409358e-38!GO:0009058;biosynthetic process;1.40637091249758e-38!GO:0006397;mRNA processing;2.62547425417689e-38!GO:0006259;DNA metabolic process;4.45984464739996e-38!GO:0005829;cytosol;3.68605144460861e-37!GO:0043228;non-membrane-bound organelle;4.32319444409236e-37!GO:0043232;intracellular non-membrane-bound organelle;4.32319444409236e-37!GO:0009059;macromolecule biosynthetic process;2.86381801747923e-36!GO:0044249;cellular biosynthetic process;7.61147952082381e-36!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.2285869185075e-35!GO:0033279;ribosomal subunit;7.64080259407005e-35!GO:0006996;organelle organization and biogenesis;4.60246576245555e-33!GO:0046907;intracellular transport;7.53374291324271e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.37777893278313e-32!GO:0007049;cell cycle;1.93093349098555e-32!GO:0065003;macromolecular complex assembly;2.67595003620912e-31!GO:0010467;gene expression;6.86170567143493e-31!GO:0005740;mitochondrial envelope;1.72480952063328e-30!GO:0019866;organelle inner membrane;3.04466829026734e-30!GO:0006886;intracellular protein transport;4.56073697906426e-30!GO:0000166;nucleotide binding;9.91253997537046e-30!GO:0031966;mitochondrial membrane;1.50145446594525e-29!GO:0005654;nucleoplasm;2.54963942878816e-28!GO:0005681;spliceosome;4.18187212665319e-28!GO:0005743;mitochondrial inner membrane;1.67765690006203e-27!GO:0022607;cellular component assembly;3.60994071967309e-27!GO:0006974;response to DNA damage stimulus;5.4304181135057e-24!GO:0005694;chromosome;1.78245391919066e-23!GO:0022402;cell cycle process;2.11193558261802e-23!GO:0031980;mitochondrial lumen;2.15504739747572e-23!GO:0005759;mitochondrial matrix;2.15504739747572e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.83702630199331e-23!GO:0000278;mitotic cell cycle;5.75965583540151e-23!GO:0044451;nucleoplasm part;9.6871185656812e-23!GO:0012505;endomembrane system;9.98325391704666e-23!GO:0006119;oxidative phosphorylation;2.76514235474079e-22!GO:0032553;ribonucleotide binding;4.15970562521257e-22!GO:0032555;purine ribonucleotide binding;4.15970562521257e-22!GO:0017076;purine nucleotide binding;4.88100586043505e-22!GO:0051649;establishment of cellular localization;5.44954875797328e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.61346471192015e-22!GO:0016462;pyrophosphatase activity;8.62263511748867e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.1095268331133e-21!GO:0051641;cellular localization;2.02969684560094e-21!GO:0005524;ATP binding;4.37607886830831e-21!GO:0044427;chromosomal part;4.63363367626754e-21!GO:0017111;nucleoside-triphosphatase activity;5.50779845457082e-21!GO:0032559;adenyl ribonucleotide binding;7.63736204441893e-21!GO:0030554;adenyl nucleotide binding;1.57221761777171e-20!GO:0006281;DNA repair;1.70044643653769e-20!GO:0044445;cytosolic part;5.74628697948153e-20!GO:0015935;small ribosomal subunit;1.23117487194386e-19!GO:0044265;cellular macromolecule catabolic process;1.42174696926244e-19!GO:0016874;ligase activity;1.68793720631601e-19!GO:0044455;mitochondrial membrane part;1.9712944828642e-19!GO:0003676;nucleic acid binding;4.77255241373798e-19!GO:0022618;protein-RNA complex assembly;1.20185303935757e-18!GO:0000087;M phase of mitotic cell cycle;1.61432617912975e-18!GO:0005730;nucleolus;2.31587856525577e-18!GO:0007067;mitosis;4.26619486861753e-18!GO:0022403;cell cycle phase;9.0130122595981e-18!GO:0000502;proteasome complex (sensu Eukaryota);1.3284354787315e-17!GO:0051301;cell division;2.61195107577997e-17!GO:0051186;cofactor metabolic process;3.63239099441979e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;3.68492696977899e-17!GO:0019941;modification-dependent protein catabolic process;6.99251110405458e-17!GO:0043632;modification-dependent macromolecule catabolic process;6.99251110405458e-17!GO:0044257;cellular protein catabolic process;9.08538433800972e-17!GO:0005783;endoplasmic reticulum;9.6338630085572e-17!GO:0006260;DNA replication;1.39178503942071e-16!GO:0009719;response to endogenous stimulus;1.43122700069909e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.55265989504503e-16!GO:0006512;ubiquitin cycle;2.19858762879032e-16!GO:0005761;mitochondrial ribosome;2.77739729515344e-16!GO:0000313;organellar ribosome;2.77739729515344e-16!GO:0015934;large ribosomal subunit;2.77739729515344e-16!GO:0044248;cellular catabolic process;3.23653069276845e-16!GO:0051276;chromosome organization and biogenesis;3.73833006054487e-16!GO:0043285;biopolymer catabolic process;4.10425412020136e-16!GO:0005746;mitochondrial respiratory chain;4.45112894903511e-16!GO:0006457;protein folding;4.75841094350473e-16!GO:0008135;translation factor activity, nucleic acid binding;7.35591278034855e-16!GO:0000279;M phase;8.31867909935338e-16!GO:0009057;macromolecule catabolic process;8.37003191994978e-16!GO:0016887;ATPase activity;1.03454945210853e-15!GO:0042623;ATPase activity, coupled;1.28232313292583e-15!GO:0044432;endoplasmic reticulum part;2.00128963777221e-15!GO:0048770;pigment granule;5.49937016058562e-15!GO:0042470;melanosome;5.49937016058562e-15!GO:0006605;protein targeting;6.58112713068805e-15!GO:0042254;ribosome biogenesis and assembly;7.48200669963186e-15!GO:0006732;coenzyme metabolic process;1.02627891842357e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.6334611380869e-14!GO:0005794;Golgi apparatus;2.11346842052481e-14!GO:0005635;nuclear envelope;3.21966057255483e-14!GO:0030163;protein catabolic process;5.29329717056112e-14!GO:0050136;NADH dehydrogenase (quinone) activity;6.3133106579873e-14!GO:0003954;NADH dehydrogenase activity;6.3133106579873e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.3133106579873e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;8.78901984064105e-14!GO:0000375;RNA splicing, via transesterification reactions;8.78901984064105e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.78901984064105e-14!GO:0008134;transcription factor binding;9.89922636285626e-14!GO:0043412;biopolymer modification;3.36686504356236e-13!GO:0003743;translation initiation factor activity;3.36686504356236e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.71540591180919e-13!GO:0016070;RNA metabolic process;6.269152803621e-13!GO:0016604;nuclear body;8.86976102270816e-13!GO:0051082;unfolded protein binding;1.02900495324971e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.37829345541119e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.4381800498043e-12!GO:0031965;nuclear membrane;1.88738960443386e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.96818787473072e-12!GO:0042773;ATP synthesis coupled electron transport;1.96818787473072e-12!GO:0005789;endoplasmic reticulum membrane;3.13710511968077e-12!GO:0048193;Golgi vesicle transport;4.23646079118893e-12!GO:0004386;helicase activity;6.70664271020082e-12!GO:0030964;NADH dehydrogenase complex (quinone);7.09053462892888e-12!GO:0045271;respiratory chain complex I;7.09053462892888e-12!GO:0005747;mitochondrial respiratory chain complex I;7.09053462892888e-12!GO:0044453;nuclear membrane part;8.20880223279453e-12!GO:0016192;vesicle-mediated transport;8.28318995150175e-12!GO:0051726;regulation of cell cycle;9.19967124549735e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.17859005322357e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.353438537331e-11!GO:0000074;regulation of progression through cell cycle;1.35415520269264e-11!GO:0006413;translational initiation;1.3669485954187e-11!GO:0016787;hydrolase activity;1.94018909922171e-11!GO:0006464;protein modification process;2.7381072304279e-11!GO:0006399;tRNA metabolic process;2.93307979011421e-11!GO:0006913;nucleocytoplasmic transport;3.89239849031312e-11!GO:0000785;chromatin;4.38610761881299e-11!GO:0006323;DNA packaging;4.43296140406989e-11!GO:0009055;electron carrier activity;4.43296140406989e-11!GO:0012501;programmed cell death;4.48548582064787e-11!GO:0008026;ATP-dependent helicase activity;4.53575514919637e-11!GO:0006915;apoptosis;5.32335552750536e-11!GO:0051169;nuclear transport;8.15250307365801e-11!GO:0006366;transcription from RNA polymerase II promoter;8.80300007843725e-11!GO:0006446;regulation of translational initiation;1.07753773216369e-10!GO:0008219;cell death;1.6152367368945e-10!GO:0016265;death;1.6152367368945e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.01822844257484e-10!GO:0005768;endosome;3.2376820081941e-10!GO:0008565;protein transporter activity;3.47220931013367e-10!GO:0016607;nuclear speck;3.9269015311455e-10!GO:0045333;cellular respiration;4.36375161671004e-10!GO:0009060;aerobic respiration;7.00391000944076e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;7.28721323923311e-10!GO:0051188;cofactor biosynthetic process;8.84000547671982e-10!GO:0065004;protein-DNA complex assembly;8.86154284051833e-10!GO:0043687;post-translational protein modification;8.91329590558314e-10!GO:0005643;nuclear pore;9.36496167576756e-10!GO:0006364;rRNA processing;1.0759754548956e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.19567886759996e-09!GO:0016072;rRNA metabolic process;1.36176189122087e-09!GO:0006403;RNA localization;2.314683013903e-09!GO:0009056;catabolic process;2.37078792534093e-09!GO:0009259;ribonucleotide metabolic process;2.46094298900162e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.53853913139874e-09!GO:0004812;aminoacyl-tRNA ligase activity;2.53853913139874e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.53853913139874e-09!GO:0050657;nucleic acid transport;2.92308924516924e-09!GO:0051236;establishment of RNA localization;2.92308924516924e-09!GO:0050658;RNA transport;2.92308924516924e-09!GO:0065002;intracellular protein transport across a membrane;2.93388104532054e-09!GO:0003712;transcription cofactor activity;3.43698367188825e-09!GO:0015986;ATP synthesis coupled proton transport;4.43396557449209e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.43396557449209e-09!GO:0015078;hydrogen ion transmembrane transporter activity;5.23747375499132e-09!GO:0006333;chromatin assembly or disassembly;7.89108367957006e-09!GO:0043038;amino acid activation;7.89732016544791e-09!GO:0006418;tRNA aminoacylation for protein translation;7.89732016544791e-09!GO:0043039;tRNA aminoacylation;7.89732016544791e-09!GO:0006163;purine nucleotide metabolic process;8.0449343355245e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.52453107810234e-09!GO:0009150;purine ribonucleotide metabolic process;2.30102221835702e-08!GO:0009108;coenzyme biosynthetic process;2.3427061985538e-08!GO:0006461;protein complex assembly;2.42869320194064e-08!GO:0007005;mitochondrion organization and biogenesis;2.44860222649007e-08!GO:0005819;spindle;2.44860222649007e-08!GO:0006261;DNA-dependent DNA replication;2.76075114188092e-08!GO:0006752;group transfer coenzyme metabolic process;3.00527998315743e-08!GO:0046034;ATP metabolic process;3.14226163783037e-08!GO:0005657;replication fork;3.76790788018552e-08!GO:0009260;ribonucleotide biosynthetic process;3.89162869854862e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.03578167978968e-08!GO:0006754;ATP biosynthetic process;5.15971512341937e-08!GO:0006753;nucleoside phosphate metabolic process;5.15971512341937e-08!GO:0006164;purine nucleotide biosynthetic process;5.30368065031805e-08!GO:0009141;nucleoside triphosphate metabolic process;5.84722908492483e-08!GO:0017038;protein import;6.74446906994011e-08!GO:0009199;ribonucleoside triphosphate metabolic process;6.99920357154629e-08!GO:0008639;small protein conjugating enzyme activity;7.62419634310655e-08!GO:0046930;pore complex;7.97673358345148e-08!GO:0000775;chromosome, pericentric region;9.5016775499964e-08!GO:0005839;proteasome core complex (sensu Eukaryota);1.011688605217e-07!GO:0019829;cation-transporting ATPase activity;1.11893543756636e-07!GO:0016779;nucleotidyltransferase activity;1.14636560923866e-07!GO:0019787;small conjugating protein ligase activity;1.18740149879448e-07!GO:0016740;transferase activity;1.18740149879448e-07!GO:0006099;tricarboxylic acid cycle;1.24012737613368e-07!GO:0046356;acetyl-CoA catabolic process;1.24012737613368e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.34626902494348e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.34626902494348e-07!GO:0006084;acetyl-CoA metabolic process;1.39264809637669e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.43407417597792e-07!GO:0004842;ubiquitin-protein ligase activity;1.53177353177944e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.8147614158405e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.8147614158405e-07!GO:0051028;mRNA transport;1.96706596590642e-07!GO:0005793;ER-Golgi intermediate compartment;2.1504938021281e-07!GO:0009109;coenzyme catabolic process;2.63997115069822e-07!GO:0007051;spindle organization and biogenesis;2.66244606243586e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.73857882105395e-07!GO:0015630;microtubule cytoskeleton;2.86303733666017e-07!GO:0043566;structure-specific DNA binding;3.32509333664565e-07!GO:0003724;RNA helicase activity;3.39569471617465e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.57819911827772e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.60929616240656e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.60929616240656e-07!GO:0016568;chromatin modification;4.34584461022917e-07!GO:0004298;threonine endopeptidase activity;4.35644701634022e-07!GO:0005770;late endosome;6.13033119090256e-07!GO:0051187;cofactor catabolic process;6.76298237314136e-07!GO:0000151;ubiquitin ligase complex;7.44605046371134e-07!GO:0016567;protein ubiquitination;7.44605046371134e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.53519816755551e-07!GO:0016881;acid-amino acid ligase activity;7.97778176737924e-07!GO:0000245;spliceosome assembly;8.29293204765335e-07!GO:0005667;transcription factor complex;9.12476527481656e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.28190739100343e-07!GO:0005813;centrosome;1.16775305650286e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.16775305650286e-06!GO:0048475;coated membrane;1.32663750971182e-06!GO:0030117;membrane coat;1.32663750971182e-06!GO:0003697;single-stranded DNA binding;1.43902523507899e-06!GO:0044440;endosomal part;1.43902523507899e-06!GO:0010008;endosome membrane;1.43902523507899e-06!GO:0006793;phosphorus metabolic process;1.46998380304153e-06!GO:0006796;phosphate metabolic process;1.46998380304153e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.58176854196563e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.66416029448989e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.75068847258765e-06!GO:0032446;protein modification by small protein conjugation;1.83905057611796e-06!GO:0045259;proton-transporting ATP synthase complex;2.18979033198087e-06!GO:0005773;vacuole;2.48396467100109e-06!GO:0030120;vesicle coat;3.0724061674386e-06!GO:0030662;coated vesicle membrane;3.0724061674386e-06!GO:0043623;cellular protein complex assembly;3.09220601627547e-06!GO:0044431;Golgi apparatus part;3.3295528547594e-06!GO:0005815;microtubule organizing center;3.40851465592012e-06!GO:0051329;interphase of mitotic cell cycle;4.96504007911066e-06!GO:0006302;double-strand break repair;5.40103440495013e-06!GO:0000323;lytic vacuole;5.76587153912762e-06!GO:0005764;lysosome;5.76587153912762e-06!GO:0006334;nucleosome assembly;7.26997780259128e-06!GO:0006613;cotranslational protein targeting to membrane;9.04773416193042e-06!GO:0051325;interphase;9.60156149144598e-06!GO:0031497;chromatin assembly;1.04078782916801e-05!GO:0000314;organellar small ribosomal subunit;1.26114759387697e-05!GO:0005763;mitochondrial small ribosomal subunit;1.26114759387697e-05!GO:0005762;mitochondrial large ribosomal subunit;1.28961834941174e-05!GO:0000315;organellar large ribosomal subunit;1.28961834941174e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.32861230772896e-05!GO:0015399;primary active transmembrane transporter activity;1.32861230772896e-05!GO:0042981;regulation of apoptosis;1.35748101847197e-05!GO:0051168;nuclear export;1.38240773271922e-05!GO:0045454;cell redox homeostasis;1.43871206145471e-05!GO:0043067;regulation of programmed cell death;1.64408864251823e-05!GO:0003713;transcription coactivator activity;1.65139198410873e-05!GO:0009117;nucleotide metabolic process;1.65139198410873e-05!GO:0007059;chromosome segregation;1.80030396040865e-05!GO:0051427;hormone receptor binding;1.8636981624367e-05!GO:0016563;transcription activator activity;2.06603097890718e-05!GO:0008186;RNA-dependent ATPase activity;2.16571913381252e-05!GO:0016310;phosphorylation;2.35062562444327e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.47701517829927e-05!GO:0051170;nuclear import;2.47701517829927e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.56324823003781e-05!GO:0006091;generation of precursor metabolites and energy;2.7975603105612e-05!GO:0000075;cell cycle checkpoint;2.88836322984303e-05!GO:0051246;regulation of protein metabolic process;3.03270811226559e-05!GO:0016491;oxidoreductase activity;3.54605858786888e-05!GO:0031968;organelle outer membrane;3.84278781710992e-05!GO:0003899;DNA-directed RNA polymerase activity;3.91760784103991e-05!GO:0035257;nuclear hormone receptor binding;4.11758694247888e-05!GO:0019867;outer membrane;4.50469177076441e-05!GO:0006606;protein import into nucleus;4.80189269450734e-05!GO:0005769;early endosome;6.20810120434803e-05!GO:0005741;mitochondrial outer membrane;6.39611973698749e-05!GO:0004004;ATP-dependent RNA helicase activity;6.52658455109909e-05!GO:0043069;negative regulation of programmed cell death;6.52658455109909e-05!GO:0006352;transcription initiation;6.86818356116452e-05!GO:0008654;phospholipid biosynthetic process;7.34566518565338e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.41213164021715e-05!GO:0043021;ribonucleoprotein binding;7.57037745393665e-05!GO:0005798;Golgi-associated vesicle;8.37827861381462e-05!GO:0008094;DNA-dependent ATPase activity;9.80632959855696e-05!GO:0043066;negative regulation of apoptosis;0.000100056311260506!GO:0006612;protein targeting to membrane;0.000100056311260506!GO:0045786;negative regulation of progression through cell cycle;0.000110193319549995!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000116798756305778!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000117483705808383!GO:0000139;Golgi membrane;0.000117848534457043!GO:0051052;regulation of DNA metabolic process;0.000118619370049004!GO:0003729;mRNA binding;0.000119353797063301!GO:0003690;double-stranded DNA binding;0.000149414327056557!GO:0007088;regulation of mitosis;0.000197251903106526!GO:0048523;negative regulation of cellular process;0.00020170538395613!GO:0016251;general RNA polymerase II transcription factor activity;0.000206433836744432!GO:0031988;membrane-bound vesicle;0.000216392327125709!GO:0000786;nucleosome;0.000224785202906305!GO:0016023;cytoplasmic membrane-bound vesicle;0.000227960960948219!GO:0043492;ATPase activity, coupled to movement of substances;0.000243096300783187!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000257008793741921!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00026149161115414!GO:0016564;transcription repressor activity;0.000265067446944462!GO:0000776;kinetochore;0.000273765528745313!GO:0006626;protein targeting to mitochondrion;0.000284171291777142!GO:0005788;endoplasmic reticulum lumen;0.000285869512723675!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000287612917859411!GO:0006916;anti-apoptosis;0.000288742697065863!GO:0006401;RNA catabolic process;0.000289062201543693!GO:0015992;proton transport;0.000307756806141377!GO:0006818;hydrogen transport;0.000324035034199334!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000328993909459803!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000332423565438969!GO:0044452;nucleolar part;0.000356816749423279!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000399938645721749!GO:0007052;mitotic spindle organization and biogenesis;0.000466173758199195!GO:0008033;tRNA processing;0.000499230095407149!GO:0006082;organic acid metabolic process;0.000500633024828363!GO:0005525;GTP binding;0.000507495332384756!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000513125087943008!GO:0019752;carboxylic acid metabolic process;0.000542850712469767!GO:0016853;isomerase activity;0.000543272816081229!GO:0006402;mRNA catabolic process;0.00057558491034885!GO:0007243;protein kinase cascade;0.000578490442950719!GO:0004527;exonuclease activity;0.000641571473272446!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000646415847124276!GO:0003682;chromatin binding;0.000654118702602527!GO:0043681;protein import into mitochondrion;0.000659793945913765!GO:0051252;regulation of RNA metabolic process;0.000660751799798714!GO:0043596;nuclear replication fork;0.000683855733401317!GO:0042802;identical protein binding;0.000733453495831615!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000739648571806077!GO:0050794;regulation of cellular process;0.000858906053215314!GO:0005048;signal sequence binding;0.000864500000506319!GO:0006310;DNA recombination;0.000872884868366753!GO:0022890;inorganic cation transmembrane transporter activity;0.000884959249314286!GO:0065009;regulation of a molecular function;0.000884959249314286!GO:0031982;vesicle;0.00089653164429802!GO:0005774;vacuolar membrane;0.000897730286049808!GO:0050662;coenzyme binding;0.000913689664954205!GO:0006891;intra-Golgi vesicle-mediated transport;0.000941073998075735!GO:0003924;GTPase activity;0.000973025900756372!GO:0003678;DNA helicase activity;0.00100332932571153!GO:0000049;tRNA binding;0.00104762770794244!GO:0033116;ER-Golgi intermediate compartment membrane;0.00104789839735593!GO:0031410;cytoplasmic vesicle;0.00104789839735593!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00105464751377903!GO:0051920;peroxiredoxin activity;0.0011194030019929!GO:0016363;nuclear matrix;0.00114521766359035!GO:0019899;enzyme binding;0.00117678275779597!GO:0030118;clathrin coat;0.00118137337292566!GO:0015980;energy derivation by oxidation of organic compounds;0.0012917598742445!GO:0046474;glycerophospholipid biosynthetic process;0.00132722542071766!GO:0048471;perinuclear region of cytoplasm;0.00133414780630743!GO:0031072;heat shock protein binding;0.00137677405113926!GO:0005885;Arp2/3 protein complex;0.00137723799702951!GO:0046489;phosphoinositide biosynthetic process;0.00151233790852031!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00154840044973309!GO:0005684;U2-dependent spliceosome;0.00156286544049958!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00157396038267813!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00157396038267813!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00157396038267813!GO:0006839;mitochondrial transport;0.00165998926193322!GO:0030880;RNA polymerase complex;0.00178330085017837!GO:0004518;nuclease activity;0.00179023232921191!GO:0031252;leading edge;0.00182297783149632!GO:0043488;regulation of mRNA stability;0.00187195863870865!GO:0043487;regulation of RNA stability;0.00187195863870865!GO:0031902;late endosome membrane;0.00187195863870865!GO:0048500;signal recognition particle;0.00188964648794623!GO:0008632;apoptotic program;0.00196159364430401!GO:0000059;protein import into nucleus, docking;0.00202065893521955!GO:0016272;prefoldin complex;0.00202065893521955!GO:0008637;apoptotic mitochondrial changes;0.00202065893521955!GO:0006650;glycerophospholipid metabolic process;0.00209252196869655!GO:0031324;negative regulation of cellular metabolic process;0.00216162614148493!GO:0006414;translational elongation;0.00218043620280147!GO:0030521;androgen receptor signaling pathway;0.00222337446434044!GO:0005637;nuclear inner membrane;0.00222337446434044!GO:0048519;negative regulation of biological process;0.00227339316092877!GO:0044437;vacuolar part;0.00229414206479365!GO:0030867;rough endoplasmic reticulum membrane;0.00238024894493962!GO:0032508;DNA duplex unwinding;0.00240915352328829!GO:0032392;DNA geometric change;0.00240915352328829!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00250826625639768!GO:0005876;spindle microtubule;0.00258124088468517!GO:0016197;endosome transport;0.00267512165505475!GO:0031124;mRNA 3'-end processing;0.00269551797081011!GO:0030176;integral to endoplasmic reticulum membrane;0.0027102743481031!GO:0006405;RNA export from nucleus;0.0027890371901767!GO:0030119;AP-type membrane coat adaptor complex;0.0027890371901767!GO:0008312;7S RNA binding;0.00280149067665781!GO:0007264;small GTPase mediated signal transduction;0.00284797662352141!GO:0032561;guanyl ribonucleotide binding;0.00286838222787536!GO:0019001;guanyl nucleotide binding;0.00286838222787536!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0030981205924187!GO:0051087;chaperone binding;0.00314194153144008!GO:0008022;protein C-terminus binding;0.00317807725136941!GO:0048522;positive regulation of cellular process;0.00326784199850119!GO:0030131;clathrin adaptor complex;0.00327371244106195!GO:0006268;DNA unwinding during replication;0.00328208476697505!GO:0051540;metal cluster binding;0.00332762115146224!GO:0051536;iron-sulfur cluster binding;0.00332762115146224!GO:0003702;RNA polymerase II transcription factor activity;0.00337810780739715!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00345074921506605!GO:0035258;steroid hormone receptor binding;0.0034535231027569!GO:0009892;negative regulation of metabolic process;0.00353297098532007!GO:0042393;histone binding;0.00356170521573721!GO:0015631;tubulin binding;0.00366680640703564!GO:0051789;response to protein stimulus;0.00367135144300975!GO:0006986;response to unfolded protein;0.00367135144300975!GO:0043601;nuclear replisome;0.00373379849373435!GO:0030894;replisome;0.00373379849373435!GO:0006383;transcription from RNA polymerase III promoter;0.00373379849373435!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00373379849373435!GO:0000428;DNA-directed RNA polymerase complex;0.00373379849373435!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0037792515170833!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00380190974612629!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00380190974612629!GO:0005765;lysosomal membrane;0.00392394256938484!GO:0004576;oligosaccharyl transferase activity;0.00396540571907756!GO:0006950;response to stress;0.00406565747028091!GO:0030384;phosphoinositide metabolic process;0.00406565747028091!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00430864506960198!GO:0045047;protein targeting to ER;0.00430864506960198!GO:0003684;damaged DNA binding;0.00447159426947267!GO:0006270;DNA replication initiation;0.00455826421875181!GO:0016741;transferase activity, transferring one-carbon groups;0.00463871708381432!GO:0007033;vacuole organization and biogenesis;0.00463944622312201!GO:0000725;recombinational repair;0.00464434539827964!GO:0000724;double-strand break repair via homologous recombination;0.00464434539827964!GO:0003714;transcription corepressor activity;0.00466203740487034!GO:0046483;heterocycle metabolic process;0.00472436970021068!GO:0000922;spindle pole;0.00484958839989003!GO:0006611;protein export from nucleus;0.00501194097326703!GO:0030133;transport vesicle;0.00513333160267393!GO:0007040;lysosome organization and biogenesis;0.00513333160267393!GO:0000228;nuclear chromosome;0.00513333160267393!GO:0007093;mitotic cell cycle checkpoint;0.00514738053922326!GO:0008250;oligosaccharyl transferase complex;0.0052876804245799!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0052876804245799!GO:0015002;heme-copper terminal oxidase activity;0.0052876804245799!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0052876804245799!GO:0004129;cytochrome-c oxidase activity;0.0052876804245799!GO:0000070;mitotic sister chromatid segregation;0.00557442818946093!GO:0000287;magnesium ion binding;0.00559526962990591!GO:0008234;cysteine-type peptidase activity;0.005730347175256!GO:0004674;protein serine/threonine kinase activity;0.00593002248924012!GO:0008408;3'-5' exonuclease activity;0.00607595126876708!GO:0008168;methyltransferase activity;0.00607595126876708!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0061729023298837!GO:0009165;nucleotide biosynthetic process;0.00628362795090931!GO:0005669;transcription factor TFIID complex;0.00631031703783578!GO:0030663;COPI coated vesicle membrane;0.00639681333012612!GO:0030126;COPI vesicle coat;0.00639681333012612!GO:0006520;amino acid metabolic process;0.00659535535296041!GO:0016408;C-acyltransferase activity;0.00674975867524691!GO:0048037;cofactor binding;0.00676980278597702!GO:0043022;ribosome binding;0.00676987628219851!GO:0019843;rRNA binding;0.0069313688218559!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00716931388940592!GO:0000819;sister chromatid segregation;0.0074081929416343!GO:0005791;rough endoplasmic reticulum;0.00770658148099477!GO:0048487;beta-tubulin binding;0.00785802147336718!GO:0050790;regulation of catalytic activity;0.00796280688562518!GO:0030658;transport vesicle membrane;0.00798632387153753!GO:0030659;cytoplasmic vesicle membrane;0.00833394687674235!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00839781121675684!GO:0006376;mRNA splice site selection;0.00841202092401975!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00841202092401975!GO:0046467;membrane lipid biosynthetic process;0.00860886149964061!GO:0016126;sterol biosynthetic process;0.00868147067858736!GO:0044438;microbody part;0.0087277511218966!GO:0044439;peroxisomal part;0.0087277511218966!GO:0007017;microtubule-based process;0.00876464796118523!GO:0006118;electron transport;0.00876464796118523!GO:0030518;steroid hormone receptor signaling pathway;0.00880499576513214!GO:0006595;polyamine metabolic process;0.00880499576513214!GO:0016584;nucleosome positioning;0.00884405101302355!GO:0006506;GPI anchor biosynthetic process;0.00891634055680345!GO:0016859;cis-trans isomerase activity;0.00893310953028274!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00918272956068657!GO:0000339;RNA cap binding;0.00918964369916492!GO:0007006;mitochondrial membrane organization and biogenesis;0.00936320113777804!GO:0005663;DNA replication factor C complex;0.00949733567042943!GO:0007010;cytoskeleton organization and biogenesis;0.00956029984101857!GO:0000096;sulfur amino acid metabolic process;0.00957920599682078!GO:0051539;4 iron, 4 sulfur cluster binding;0.00967771082680738!GO:0001711;endodermal cell fate commitment;0.00967771082680738!GO:0030858;positive regulation of epithelial cell differentiation;0.00967771082680738!GO:0031528;microvillus membrane;0.00967771082680738!GO:0001706;endoderm formation;0.00967771082680738!GO:0000082;G1/S transition of mitotic cell cycle;0.0100306013243487!GO:0006338;chromatin remodeling;0.0101221784595466!GO:0031123;RNA 3'-end processing;0.0101392360117123!GO:0031570;DNA integrity checkpoint;0.010156038967765!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0102089286847108!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0104792781816205!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0107344435776988!GO:0005832;chaperonin-containing T-complex;0.0108459484073727!GO:0044433;cytoplasmic vesicle part;0.0109935782571142!GO:0005869;dynactin complex;0.0111551271361446!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0113354652631137!GO:0045045;secretory pathway;0.0113967186565332!GO:0004532;exoribonuclease activity;0.0117173887506546!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0117173887506546!GO:0003756;protein disulfide isomerase activity;0.0117318743667802!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0117318743667802!GO:0005996;monosaccharide metabolic process;0.0117365770090278!GO:0031903;microbody membrane;0.0119144517979599!GO:0005778;peroxisomal membrane;0.0119144517979599!GO:0031647;regulation of protein stability;0.0120583187319577!GO:0046983;protein dimerization activity;0.0123648261649231!GO:0006505;GPI anchor metabolic process;0.0125455523849296!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0126990786877539!GO:0019318;hexose metabolic process;0.0128414938427275!GO:0008180;signalosome;0.0128823469633985!GO:0051287;NAD binding;0.0134327887456554!GO:0004448;isocitrate dehydrogenase activity;0.0139233608909012!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.014204059968184!GO:0006275;regulation of DNA replication;0.0143336234392019!GO:0008139;nuclear localization sequence binding;0.0146966846865012!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0148141343633539!GO:0051338;regulation of transferase activity;0.015776383936654!GO:0005874;microtubule;0.0162256761030656!GO:0032507;maintenance of cellular protein localization;0.0168651008173336!GO:0006497;protein amino acid lipidation;0.017091195456112!GO:0050681;androgen receptor binding;0.0171239431457969!GO:0000738;DNA catabolic process, exonucleolytic;0.0171970888597274!GO:0051053;negative regulation of DNA metabolic process;0.0174839842522251!GO:0030137;COPI-coated vesicle;0.0176506988359075!GO:0030660;Golgi-associated vesicle membrane;0.0177074432205531!GO:0006984;ER-nuclear signaling pathway;0.0180443065213702!GO:0017166;vinculin binding;0.0180668281179794!GO:0012506;vesicle membrane;0.018383029688623!GO:0016301;kinase activity;0.0185966592601707!GO:0006378;mRNA polyadenylation;0.018755076782714!GO:0003746;translation elongation factor activity;0.0189309696912595!GO:0006740;NADPH regeneration;0.0191891172830796!GO:0006098;pentose-phosphate shunt;0.0191891172830796!GO:0008538;proteasome activator activity;0.0196226025009364!GO:0030125;clathrin vesicle coat;0.0203060451392954!GO:0030665;clathrin coated vesicle membrane;0.0203060451392954!GO:0006730;one-carbon compound metabolic process;0.0203060451392954!GO:0030145;manganese ion binding;0.0204450604896543!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0205223464022583!GO:0000152;nuclear ubiquitin ligase complex;0.0205670736147441!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0206747020707891!GO:0030132;clathrin coat of coated pit;0.0218586859129862!GO:0006643;membrane lipid metabolic process;0.0218586859129862!GO:0000178;exosome (RNase complex);0.0219349766366296!GO:0001836;release of cytochrome c from mitochondria;0.0224399661870947!GO:0009967;positive regulation of signal transduction;0.0224399661870947!GO:0007265;Ras protein signal transduction;0.0225050393980253!GO:0006509;membrane protein ectodomain proteolysis;0.0226022289391536!GO:0033619;membrane protein proteolysis;0.0226022289391536!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0228734198547143!GO:0006672;ceramide metabolic process;0.0228734198547143!GO:0000726;non-recombinational repair;0.0228734198547143!GO:0018196;peptidyl-asparagine modification;0.0228734198547143!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0228734198547143!GO:0015036;disulfide oxidoreductase activity;0.0228734198547143!GO:0032200;telomere organization and biogenesis;0.0228749105207906!GO:0000723;telomere maintenance;0.0228749105207906!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0232708886473783!GO:0044262;cellular carbohydrate metabolic process;0.0233012292047678!GO:0003725;double-stranded RNA binding;0.023428779517301!GO:0000118;histone deacetylase complex;0.0236008715361115!GO:0019206;nucleoside kinase activity;0.0236008715361115!GO:0005905;coated pit;0.0236290672947413!GO:0042770;DNA damage response, signal transduction;0.0249472431800477!GO:0030433;ER-associated protein catabolic process;0.0254048305402501!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0254048305402501!GO:0045893;positive regulation of transcription, DNA-dependent;0.0254048305402501!GO:0007034;vacuolar transport;0.0261139890174189!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0267584888572099!GO:0019783;small conjugating protein-specific protease activity;0.0270009779018427!GO:0044450;microtubule organizing center part;0.0270956328774373!GO:0009451;RNA modification;0.0273517717285697!GO:0046966;thyroid hormone receptor binding;0.0273552596520743!GO:0006695;cholesterol biosynthetic process;0.0275307553649883!GO:0016790;thiolester hydrolase activity;0.0275375054566495!GO:0033170;DNA-protein loading ATPase activity;0.0280323291349497!GO:0003689;DNA clamp loader activity;0.0280323291349497!GO:0004003;ATP-dependent DNA helicase activity;0.028200269570797!GO:0043624;cellular protein complex disassembly;0.0282253143165728!GO:0016791;phosphoric monoester hydrolase activity;0.0285403487666644!GO:0045941;positive regulation of transcription;0.0286196718209278!GO:0005083;small GTPase regulator activity;0.028626273931061!GO:0006284;base-excision repair;0.0286964812499444!GO:0030503;regulation of cell redox homeostasis;0.0291107200862193!GO:0051651;maintenance of cellular localization;0.029372205217577!GO:0004540;ribonuclease activity;0.0296812745207762!GO:0007021;tubulin folding;0.0299363056257113!GO:0008017;microtubule binding;0.0301088212359336!GO:0017134;fibroblast growth factor binding;0.0302589294758145!GO:0043549;regulation of kinase activity;0.0306359438803176!GO:0030508;thiol-disulfide exchange intermediate activity;0.0310140233797483!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0314264529972967!GO:0046519;sphingoid metabolic process;0.0314548446085471!GO:0030522;intracellular receptor-mediated signaling pathway;0.0316695017724493!GO:0031901;early endosome membrane;0.0319459950897586!GO:0006892;post-Golgi vesicle-mediated transport;0.0321499185388423!GO:0006007;glucose catabolic process;0.0324952961587392!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0328210813546426!GO:0031529;ruffle organization and biogenesis;0.0328639943993613!GO:0008097;5S rRNA binding;0.0333385181950447!GO:0004843;ubiquitin-specific protease activity;0.0335057676780842!GO:0030968;unfolded protein response;0.0339642540826187!GO:0008320;protein transmembrane transporter activity;0.0344107720114019!GO:0005784;translocon complex;0.0347015592938053!GO:0022406;membrane docking;0.0348934985409477!GO:0048278;vesicle docking;0.0348934985409477!GO:0030134;ER to Golgi transport vesicle;0.0349355197871444!GO:0008610;lipid biosynthetic process;0.036061777654712!GO:0000077;DNA damage checkpoint;0.0365743089849388!GO:0007004;telomere maintenance via telomerase;0.0380976357378896!GO:0032984;macromolecular complex disassembly;0.0385202835152365!GO:0006644;phospholipid metabolic process;0.0385202835152365!GO:0046979;TAP2 binding;0.0385202835152365!GO:0046977;TAP binding;0.0385202835152365!GO:0046978;TAP1 binding;0.0385202835152365!GO:0046365;monosaccharide catabolic process;0.038893201466457!GO:0043154;negative regulation of caspase activity;0.0390624149320748!GO:0003711;transcription elongation regulator activity;0.0391124067543009!GO:0022884;macromolecule transmembrane transporter activity;0.0402457432660507!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0402457432660507!GO:0042158;lipoprotein biosynthetic process;0.0404280107164754!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0405684334046198!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0406064679373179!GO:0005758;mitochondrial intermembrane space;0.0406409551591578!GO:0016044;membrane organization and biogenesis;0.0408592798362336!GO:0009066;aspartate family amino acid metabolic process;0.0412713996996459!GO:0006739;NADP metabolic process;0.0414201685117219!GO:0008629;induction of apoptosis by intracellular signals;0.0415602641339472!GO:0030036;actin cytoskeleton organization and biogenesis;0.0415691508311331!GO:0000793;condensed chromosome;0.0416137825346203!GO:0004680;casein kinase activity;0.0418532724306027!GO:0005658;alpha DNA polymerase:primase complex;0.0418532724306027!GO:0044454;nuclear chromosome part;0.0427055110775767!GO:0030140;trans-Golgi network transport vesicle;0.0428633801351329!GO:0031371;ubiquitin conjugating enzyme complex;0.0437070678914085!GO:0005732;small nucleolar ribonucleoprotein complex;0.043748380531053!GO:0000175;3'-5'-exoribonuclease activity;0.0437949604758678!GO:0004300;enoyl-CoA hydratase activity;0.0440218664842799!GO:0006607;NLS-bearing substrate import into nucleus;0.0442161700137781!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0442161700137781!GO:0006733;oxidoreduction coenzyme metabolic process;0.0448341847820575!GO:0031625;ubiquitin protein ligase binding;0.0450606564968745!GO:0006301;postreplication repair;0.0451372551194501!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0451402819137651!GO:0010257;NADH dehydrogenase complex assembly;0.0451402819137651!GO:0033108;mitochondrial respiratory chain complex assembly;0.0451402819137651!GO:0031056;regulation of histone modification;0.0456126828173728!GO:0006904;vesicle docking during exocytosis;0.0457538751184339!GO:0000086;G2/M transition of mitotic cell cycle;0.0469244388048882!GO:0043189;H4/H2A histone acetyltransferase complex;0.0470950977596789!GO:0006458;'de novo' protein folding;0.0472050621155314!GO:0051084;'de novo' posttranslational protein folding;0.0472050621155314!GO:0030127;COPII vesicle coat;0.047525365116117!GO:0012507;ER to Golgi transport vesicle membrane;0.047525365116117!GO:0040029;regulation of gene expression, epigenetic;0.047577672162232!GO:0004221;ubiquitin thiolesterase activity;0.0486447578594943!GO:0016615;malate dehydrogenase activity;0.0491204094768038!GO:0008156;negative regulation of DNA replication;0.0497588842581271
|sample_id=10436
|sample_note=machine failed, remainder reloaded, low amount
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=stomach
|top_motifs=SNAI1..3:2.37118163781;ZEB1:2.32490651895;LMO2:1.91034968864;MYOD1:1.5969032748;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.55308756344;NR5A1,2:1.39963985022;FOXQ1:1.31631771624;PBX1:1.31396463726;E2F1..5:1.24520362757;HOX{A6,A7,B6,B7}:1.16251674117;FOXA2:1.14427258284;FOX{F1,F2,J1}:1.10288525882;ELK1,4_GABP{A,B1}:1.06953287411;bHLH_family:1.02087411178;SOX2:1.014399706;ADNP_IRX_SIX_ZHX:0.985199604405;NFY{A,B,C}:0.962556016401;FOXD3:0.950323646171;TFDP1:0.878452224957;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.866298074573;PPARG:0.858312324892;LEF1_TCF7_TCF7L1,2:0.840631864031;HNF4A_NR2F1,2:0.832120191267;ZNF148:0.748968224241;SOX{8,9,10}:0.736076342515;XCPE1{core}:0.726494247713;FOXM1:0.620460753927;ESRRA:0.610869288072;GFI1:0.595416725144;NR6A1:0.580124850779;NANOG:0.577367021984;PAX8:0.566883014731;IRF7:0.492861523799;CEBPA,B_DDIT3:0.476867359596;EP300:0.475148334509;NKX2-3_NKX2-5:0.467659651033;MYB:0.444804343741;CDC5L:0.43509883783;FOX{I1,J2}:0.433953862538;NFIX:0.38270223454;VSX1,2:0.363939622374;TLX1..3_NFIC{dimer}:0.359398862564;ONECUT1,2:0.334672986986;PAX2:0.331986896371;OCT4_SOX2{dimer}:0.328161075061;POU2F1..3:0.318472112682;HNF1A:0.30428162132;RBPJ:0.286761144891;CUX2:0.23421584471;PRRX1,2:0.224688762959;SOX5:0.218917738511;POU3F1..4:0.218802663573;PITX1..3:0.20770767111;NKX3-2:0.207614217611;FOS_FOS{B,L1}_JUN{B,D}:0.206249887188;BACH2:0.189469624992;FOXP1:0.187362605152;ATF5_CREB3:0.178741867682;SREBF1,2:0.153814396129;NFIL3:0.14379560386;BPTF:0.14019853297;TEAD1:0.135189399465;MTF1:0.128655379924;TBX4,5:0.127535021715;STAT5{A,B}:0.118210746016;ATF4:0.11140834412;YY1:0.0994749717505;POU5F1:0.0964987247618;HOX{A5,B5}:0.0865411543307;PDX1:0.0853461567351;HLF:0.0791415575143;FOSL2:0.0717162156223;ELF1,2,4:0.0498186308618;NFE2:0.0326428549962;RORA:0.0288987982371;GATA6:0.0237487397436;ARID5B:0.00314890801124;MED-1{core}:-0.00764446939768;FOXN1:-0.00977966724344;NRF1:-0.015690400757;GTF2A1,2:-0.0184806771927;ALX1:-0.0197528153035;BREu{core}:-0.023616571347;TP53:-0.0269057082213;HBP1_HMGB_SSRP1_UBTF:-0.0304452783451;TEF:-0.0384590322228;T:-0.0648633637721;NFE2L2:-0.0702683211434;IRF1,2:-0.0751964324831;ZNF143:-0.111121759419;NKX6-1,2:-0.131638972859;FOX{D1,D2}:-0.141508674862;SP1:-0.148098159327;EN1,2:-0.168751654204;LHX3,4:-0.172834119341;HES1:-0.183674454499;HAND1,2:-0.198878739234;IKZF2:-0.201372330305;STAT2,4,6:-0.219993961854;JUN:-0.247720063848;ZNF423:-0.25220091248;SOX17:-0.263567506587;EVI1:-0.271240514054;NFKB1_REL_RELA:-0.272635260688;MYBL2:-0.291524714159;AHR_ARNT_ARNT2:-0.315835194153;PAX3,7:-0.32543063651;MTE{core}:-0.343582926473;EBF1:-0.364744821782;FOXO1,3,4:-0.365729914183;RFX1:-0.370110334972;RFX2..5_RFXANK_RFXAP:-0.373389765811;ETS1,2:-0.379223135312;ZBTB6:-0.387801768622;DMAP1_NCOR{1,2}_SMARC:-0.400862428424;MEF2{A,B,C,D}:-0.407045779963;ESR1:-0.433855185608;NKX2-1,4:-0.44168748726;NKX2-2,8:-0.445705412853;IKZF1:-0.456999779187;DBP:-0.468538797792;FOXP3:-0.47485292333;PAX4:-0.489019782394;SPIB:-0.494316601765;TFCP2:-0.518477954906;TBP:-0.526391119729;CRX:-0.532105848889;POU6F1:-0.536711541595;TOPORS:-0.542104398063;SPI1:-0.543853073238;PAX5:-0.54489082772;TAL1_TCF{3,4,12}:-0.551576646516;RXRA_VDR{dimer}:-0.56073291739;RUNX1..3:-0.565590541005;NHLH1,2:-0.586791178136;ATF2:-0.609302387568;AR:-0.609694318293;TFAP2B:-0.646088600132;UFEwm:-0.661992061642;ZBTB16:-0.665018553762;AIRE:-0.679213228942;NR1H4:-0.704780046789;GTF2I:-0.722540376828;CDX1,2,4:-0.739654400076;ALX4:-0.744109889732;ZFP161:-0.761500055524;FOXL1:-0.787611104794;PAX1,9:-0.802310545149;POU1F1:-0.829149420351;HOX{A4,D4}:-0.83807012061;REST:-0.861069959948;TLX2:-0.868459999702;HMGA1,2:-0.869938982606;NR3C1:-0.877614115293;NFE2L1:-0.882968403648;PAX6:-0.887078017805;CREB1:-0.896051625069;HIC1:-0.897636255153;HMX1:-0.916936105134;XBP1:-0.927851848888;PRDM1:-0.930130998046;HIF1A:-0.932736041391;MYFfamily:-0.96775619875;RREB1:-0.971055968632;EGR1..3:-0.974215461806;GLI1..3:-0.985879371809;STAT1,3:-1.00197846386;KLF4:-1.06017000389;NKX3-1:-1.06167674228;GFI1B:-1.06638030209;ATF6:-1.11028176012;NANOG{mouse}:-1.13397023979;TGIF1:-1.1639866259;PATZ1:-1.16922236774;GCM1,2:-1.17049654388;MAZ:-1.17650766966;TFAP4:-1.18027462669;GZF1:-1.21898373883;TFAP2{A,C}:-1.26294476329;GATA4:-1.31637788492;MAFB:-1.33160863098;SRF:-1.3345268852;SMAD1..7,9:-1.36046548784;HSF1,2:-1.38716509136;ZNF384:-1.39173290049;ZNF238:-1.39863846949;SPZ1:-1.43102981512;MZF1:-1.47422209486;NFATC1..3:-1.51865963244;ZIC1..3:-1.63661553763;HOXA9_MEIS1:-1.68925760158;RXR{A,B,G}:-1.76833544336
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10436-106E4;search_select_hide=table117:FF:10436-106E4
}}
}}

Latest revision as of 14:02, 3 June 2020

Name:signet ring carcinoma cell line:Kato III
Species:Human (Homo sapiens)
Library ID:CNhs10753
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuestomach
dev stageNA
sexunknown
ageNA
cell typeunclassifiable
cell lineKato III
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005478
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10753 CAGE DRX008002 DRR008874
Accession ID Hg19

Library idBAMCTSS
CNhs10753 DRZ000299 DRZ001684
Accession ID Hg38

Library idBAMCTSS
CNhs10753 DRZ011649 DRZ013034
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10057downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0402
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.497
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0.832
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-7.531246e-4
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0278
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.112
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.168
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.199
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.297
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.368
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-5.566968e-4
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0188
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.513
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10753

Jaspar motifP-value
MA0002.20.409
MA0003.10.935
MA0004.10.00397
MA0006.10.477
MA0007.10.47
MA0009.10.0155
MA0014.10.05
MA0017.17.71166e-4
MA0018.20.356
MA0019.10.249
MA0024.17.29062e-5
MA0025.10.0563
MA0027.10.96
MA0028.11.72707e-4
MA0029.10.123
MA0030.10.156
MA0031.10.0177
MA0035.20.00892
MA0038.18.88441e-6
MA0039.24.37188e-4
MA0040.10.395
MA0041.10.865
MA0042.10.797
MA0043.10.539
MA0046.13.26501e-7
MA0047.28.03824e-5
MA0048.10.537
MA0050.10.00932
MA0051.10.00864
MA0052.10.23
MA0055.10.0037
MA0057.10.647
MA0058.17.47392e-4
MA0059.10.0026
MA0060.18.70942e-11
MA0061.10.734
MA0062.25.08405e-6
MA0065.21.80624e-4
MA0066.10.978
MA0067.10.607
MA0068.10.127
MA0069.10.902
MA0070.10.0359
MA0071.10.659
MA0072.10.916
MA0073.10.932
MA0074.10.656
MA0076.10.00172
MA0077.10.0985
MA0078.10.957
MA0079.20.7
MA0080.20.162
MA0081.10.116
MA0083.19.45172e-5
MA0084.10.647
MA0087.10.862
MA0088.10.0991
MA0090.10.716
MA0091.10.0567
MA0092.10.765
MA0093.10.00339
MA0099.21.13119e-5
MA0100.10.735
MA0101.10.285
MA0102.20.568
MA0103.11.50543e-10
MA0104.20.00303
MA0105.10.373
MA0106.10.833
MA0107.10.392
MA0108.20.0121
MA0111.10.223
MA0112.20.0318
MA0113.10.561
MA0114.13.37396e-5
MA0115.10.00295
MA0116.10.872
MA0117.10.249
MA0119.10.0259
MA0122.10.526
MA0124.10.0964
MA0125.10.0373
MA0131.10.753
MA0135.10.868
MA0136.10.91
MA0137.20.689
MA0138.20.126
MA0139.10.0364
MA0140.10.0699
MA0141.10.0185
MA0142.10.551
MA0143.10.268
MA0144.10.594
MA0145.10.157
MA0146.10.0058
MA0147.10.00415
MA0148.13.19763e-4
MA0149.10.0111
MA0150.10.328
MA0152.10.363
MA0153.12.52539e-6
MA0154.10.76
MA0155.10.43
MA0156.10.256
MA0157.10.192
MA0159.10.0026
MA0160.10.00523
MA0162.10.585
MA0163.10.473
MA0164.10.149
MA0258.10.0917
MA0259.10.152



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10753

Novel motifP-value
10.148
100.29
1000.534
1010.777
1020.285
1030.903
1040.757
1050.219
1060.343
1070.669
1080.773
1090.0124
110.343
1100.152
1110.935
1120.943
1130.257
1140.755
1150.794
1160.289
1170.107
1180.332
1190.195
120.149
1200.467
1210.667
1220.0899
1230.175
1240.471
1250.955
1260.248
1270.561
1280.757
1290.052
130.00268
1300.681
1310.127
1320.972
1330.0844
1340.433
1350.0352
1360.443
1370.872
1380.614
1390.32
140.721
1400.228
1410.391
1420.118
1430.379
1440.0947
1450.985
1460.36
1470.783
1480.286
1490.876
150.169
1500.38
1510.456
1520.773
1530.601
1540.956
1550.561
1560.226
1570.809
1580.461
1590.962
160.387
1600.56
1610.929
1620.766
1630.719
1640.754
1650.956
1660.437
1670.272
1680.935
1690.012
170.273
180.607
190.816
20.918
200.502
210.989
220.586
230.826
240.0901
250.454
260.032
270.921
280.504
290.183
30.665
300.758
310.915
320.0249
330.0591
340.591
350.721
360.0339
370.388
380.241
390.463
40.268
400.0203
410.219
420.547
430.484
440.816
450.976
460.489
470.0982
480.24
490.263
50.937
500.317
510.894
520.693
530.731
540.969
550.674
560.44
570.292
580.767
590.797
60.674
600.368
610.191
620.8
630.178
640.215
650.578
662.03208e-4
670.346
680.0176
690.0484
70.127
700.626
710.273
720.714
730.247
740.143
750.206
760.407
770.338
780.0385
790.0675
80.369
800.564
810.139
820.0373
830.524
840.414
850.228
860.974
870.0585
880.868
890.388
90.569
900.618
910.36
920.897
930.0937
940.611
950.0466
960.693
970.0681
980.109
990.717



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10753


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002178 (epithelial cell of stomach)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
3119 (gastrointestinal system cancer)
3493 (signet ring cell adenocarcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000945 (stomach)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100787 (gastric cancer cell line sample)
0101092 (KATO-III cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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