FF:10647-109A8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005182 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX007918;DRR008790;DRZ000215;DRZ001600;DRZ011565;DRZ012950 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0010077,UBERON:0005389,UBERON:0000020,UBERON:0010371,UBERON:0007625,UBERON:0000484,UBERON:0001032,UBERON:0010317,UBERON:0000965,UBERON:0001803,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0004456,UBERON:0001456,UBERON:0010230 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0000325,CL:0000255,CL:0000306,CL:0002222,CL:0002224 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101120,FF:0101874,FF:0103071 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:10412600..10412637,-!p1@TFAP2A!1.54!55.08!TFAP2A;;chr4:81118647..81118666,+!p1@PRDM8!1.52!41.91!PRDM8;;chr6:10412392..10412409,-!p4@TFAP2A!1.48!33.52!TFAP2A;;chr17:46703687..46703740,-!p1@HOXB9!1.44!26.34!HOXB9;;chr11:31832658..31832681,-!p1@PAX6!1.33!20.35!PAX6;;chr17:46688334..46688385,-!p1@HOXB7!1.29!26.34!HOXB7;;chr21:38071430..38071456,+!p1@SIM2!1.22!15.56!SIM2;;chr6:10415276..10415341,-!p2@TFAP2A!1.20!17.96!TFAP2A;;chr17:46682321..46682362,-!p1@HOXB6!1.15!13.17!HOXB6;;chr17:46806067..46806097,-!p1@HOXB13!1.15!13.17!HOXB13;;chr12:66218836..66218888,+!p1@HMGA2!1.13!117.34!HMGA2;;chr17:46687959..46688007,-!p2@HOXB7!1.12!16.76!HOXB7;;chr15:67418119..67418162,+!p5@SMAD3!1.11!13.17!SMAD3;;chr11:31832610..31832639,-!p5@PAX6!1.11!11.97!PAX6;;chr17:56065729..56065781,-!p2@VEZF1!1.10!50.29!VEZF1;;chr15:83953397..83953425,-!p1@BNC1!1.10!13.17!BNC1;;chr12:66218598..66218645,+!p2@HMGA2!1.06!49.09!HMGA2;;chr3:169381420..169381535,-!p1@MECOM!1.05!11.97!MECOM;;chr12:66218003..66218018,+!p9@HMGA2!1.03!11.97!HMGA2;;chr15:67418177..67418204,+!p9@SMAD3!1.02!9.58!SMAD3;;chr17:46703528..46703549,-!p5@HOXB9!1.02!9.58!HOXB9;;chr11:46299199..46299233,+!p1@CREB3L1!1.00!47.89!CREB3L1;;chr17:46655730..46655791,-!p1@HOXB4!1.00!22.75!HOXB4;;chr20:2673383..2673441,+!p1@EBF4!1.00!14.37!EBF4;;chr17:35294075..35294102,+!p1@ENST00000559335!0.97!8.38!LHX1;;chr10:28034739..28034756,-!p1@MKX!0.97!8.38!MKX;;chr2:42721205..42721307,+!p4@MTA3!0.97!8.38!MTA3;;chr6:10415484..10415508,-!p3@TFAP2A!0.97!8.38!TFAP2A;;chr8:23564065..23564087,-!p1@NKX2-6!0.97!8.38!NKX2-6;;chr1:25256756..25256774,-!p1@RUNX3!0.96!15.56!RUNX3;;chr5:150284532..150284549,-!p1@ZNF300!0.95!16.76!ZNF300;;chr12:80084737..80084763,-!p3@PAWR!0.94!29.93!PAWR;;chr5:176738887..176738934,-!p1@MXD3!0.93!52.68!MXD3;;chr9:114287433..114287513,+!p1@ZNF483!0.91!19.16!ZNF483;;chr17:41622731..41622764,-!p5@ETV4!0.91!7.18!ETV4;;chr17:46675558..46675577,-!p2@HOXB6!0.91!7.18!HOXB6;;chr4:109089095..109089144,-!p6@LEF1!0.91!7.18!LEF1;;chr11:46299539..46299620,+!p2@CREB3L1!0.90!11.97!CREB3L1;;chr7:6655225..6655279,+!p1@ENST00000457543!0.90!10.78!ZNF853;;chr15:67418047..67418093,+!p4@SMAD3!0.88!8.38!SMAD3;;chr12:124873852..124873881,-!p3@NCOR2!0.86!39.51!NCOR2;;chr15:96869114..96869160,+!p11@NR2F2!0.85!8.38!NR2F2;;chr12:77459306..77459365,-!p1@E2F7!0.84!79.02!E2F7;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.84!5.99!HOXC5;;chr14:69260437..69260442,-!p10@ZFP36L1!0.84!5.99!ZFP36L1;;chr6:10412576..10412599,-!p5@TFAP2A!0.84!5.99!TFAP2A;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.99!TBX20;;chrY:2803415..2803468,+!p1@ZFY!0.84!5.99!ZFY;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.99!KDM5D;;chr12:80085061..80085119,-!p6@PAWR!0.83!9.58!PAWR;;chr6:85473156..85473210,-!p2@TBX18!0.83!7.18!TBX18;;chr12:27485785..27485816,+!p1@ARNTL2!0.82!41.91!ARNTL2;;chr17:41277372..41277418,-!p1@BRCA1!0.82!21.55!BRCA1;;chr20:42543506..42543549,+!p2@TOX2!0.82!14.37!TOX2;;chr12:80085255..80085284,-!p9@PAWR!0.82!8.38!PAWR;;chr12:27485823..27485868,+!p2@ARNTL2!0.81!23.95!ARNTL2;;chr11:65667884..65667895,-!p2@FOSL1!0.81!22.75!FOSL1;;chr6:34204921..34204939,+!p3@HMGA1!0.80!173.61!HMGA1;;chr9:132427972..132428056,+!p1@PRRX2!0.80!7.18!PRRX2;;chr18:19749517..19749531,+!p3@GATA6!0.79!9.58!GATA6;;chr8:72756667..72756736,-!p2@MSC!0.79!8.38!MSC;;chr17:46675420..46675465,-!p3@HOXB6!0.79!5.99!HOXB6;;chr7:74072135..74072171,+!p2@GTF2I!0.78!16.76!GTF2I;;chr12:66218255..66218304,+!p3@HMGA2!0.78!14.37!HMGA2;;chr17:41623259..41623278,-!p7@ETV4!0.78!5.99!ETV4;;chr19:35759824..35759891,+!p1@USF2!0.77!167.62!USF2;;chr9:127533519..127533573,-!p2@NR6A1!0.77!5.99!NR6A1;;chr5:137804405..137804444,+!p3@EGR1!0.77!5.99!EGR1;;chr12:54447599..54447630,+!p3@HOXC4!0.76!5.99!HOXC4;;chr11:31832862..31832884,-!p2@PAX6!0.76!4.79!PAX6;;chr14:29235961..29236008,+!p1@FOXG1!0.76!4.79!FOXG1;;chr17:41277334..41277348,-!p6@BRCA1!0.76!4.79!BRCA1;;chr17:46687935..46687950,-!p3@HOXB7!0.76!4.79!HOXB7;;chr17:48072574..48072597,-!p1@DLX3!0.76!4.79!DLX3;;chr19:47523058..47523114,+!p1@NPAS1!0.76!4.79!NPAS1;;chr21:38071403..38071428,+!p2@SIM2!0.76!4.79!SIM2;;chr2:172949484..172949522,+!p1@DLX1!0.76!4.79!DLX1;;chr6:10412477..10412490,-!p10@TFAP2A!0.76!4.79!TFAP2A;;chr7:1577899..1577943,+!p3@MAFK!0.76!4.79!MAFK;;chr9:16705069..16705086,-!p3@BNC2!0.76!4.79!BNC2;;chr8:67525443..67525459,-!p2@MYBL1!0.75!7.18!MYBL1;;chr5:321810..321877,+!p1@AHRR!0.74!15.56!AHRR;;chr20:50179368..50179392,-!p2@NFATC2!0.74!5.99!NFATC2;;chr6:45389791..45389832,+!p3@RUNX2!0.73!11.97!RUNX2;;chr15:96874012..96874042,+!p2@NR2F2!0.72!43.10!NR2F2;;chr21:27107259..27107299,+!p1@GABPA!0.72!27.54!GABPA;;chr9:130954041..130954121,-!p2@CIZ1!0.72!20.35!CIZ1;;chr19:37019569..37019593,-!p2@ZNF260!0.72!7.18!ZNF260;;chr19:38146320..38146401,-!p1@ZFP30!0.71!25.14!ZFP30;;chrX:70503037..70503095,+!p3@NONO!0.71!7.18!NONO;;chr12:2986275..2986363,-!p1@FOXM1!0.70!45.50!FOXM1;;chr8:77593474..77593612,+!p1@ZFHX4!0.70!19.16!ZFHX4;;chr13:45011349..45011391,-!p4@TSC22D1!0.70!10.78!TSC22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X1!0.33!2.39!RUNX1;;chr6:27356745..27356777,+!p1@ZNF391!0.33!2.39!ZNF391;;chr7:86781858..86781879,+!p3@DMTF1!0.33!2.39!DMTF1;;chr7:99613195..99613206,+!p4@ZKSCAN1!0.33!2.39!ZKSCAN1;;chr2:85980951..85981004,+!p1@ATOH8!0.33!2.39!ATOH8;;chr10:3824332..3824425,-!p4@KLF6!0.33!2.39!KLF6;;chr12:56575310..56575344,-!p3@SMARCC2!0.33!2.39!SMARCC2;;chr15:96875657..96875760,+!p14@NR2F2!0.33!2.39!NR2F2;;chr19:12476443..12476467,-!p1@ZNF442!0.33!2.39!ZNF442;;chr19:36980756..36980795,-!p3@ZNF566!0.33!2.39!ZNF566;;chr4:57774042..57774114,+!p1@REST!0.32!45.50!REST;;chr3:170075436..170075520,+!p1@SKIL!0.32!40.71!SKIL;;chr17:40440481..40440550,+!p1@STAT5A!0.32!13.17!STAT5A;;chr1:120190786..120190915,-!p1@ZNF697!0.32!13.17!ZNF697;;chr19:18392236..18392248,-!p2@JUND!0.32!11.97!JUND;;chr19:12721513..12721572,-!p1@ZNF490!0.32!7.18!ZNF490;;chr10:38146510..38146576,-!p1@ZNF248!0.32!4.79!ZNF248;;chr16:8962544..8962584,-!p2@CARHSP1!0.32!3.59!CARHSP1;;chr19:21203481..21203504,+!p2@ZNF430!0.32!3.59!ZNF430;;chr17:79885633..79885645,-!p4@MAFG!0.32!2.39!MAFG;;chr19:23941647..23941672,-!p2@ZNF681!0.32!2.39!ZNF681;;chr5:172484377..172484418,+!p2@C5orf41!0.32!2.39!CREBRF;;chr10:22292675..22292686,-!p3@DNAJC1!0.32!2.39!DNAJC1;;chr12:133707021..133707071,-!p2@ZNF891!0.32!2.39!ZNF891;;chr14:69259772..69259790,-!p1@ZFP36L1!0.31!191.57!ZFP36L1;;chr5:149380256..149380343,+!p1@HMGXB3!0.31!53.88!HMGXB3;;chr19:36706024..36706049,+!p1@ZNF146!0.31!32.33!ZNF146;;chr19:17356697..17356762,-!p1@NR2F6!0.31!25.14!NR2F6;;chr18:51750839..51750885,-!p2@MBD2!0.31!17.96!MBD2;;chr9:88969303..88969335,-!p1@ZCCHC6!0.31!16.76!ZCCHC6;;chr1:44679113..44679152,+!p1@DMAP1!0.31!14.37!DMAP1;;chr9:35732647..35732678,+!p2@CREB3!0.31!9.58!CREB3;;chr3:44519131..44519186,-!p1@ZNF445!0.31!9.58!ZNF445;;chr9:116638565..116638606,+!p1@ZNF618!0.31!7.18!ZNF618;;chr8:144373550..144373617,+!p1@ZNF696!0.31!5.99!ZNF696;;chr2:174828836..174828885,-!p5@SP3!0.31!5.99!SP3;;chr3:150126416..150126437,+!p3@TSC22D2!0.31!5.99!TSC22D2;;chr9:3525910..3525955,-!p4@RFX3!0.31!4.79!RFX3;;chr20:3388579..3388619,-!p3@C20orf194!0.31!3.59!C20orf194;;chr15:74833584..74833626,+!p1@ARID3B!0.31!3.59!ARID3B;;chr14:64971438..64971450,+!p2@ZBTB1!0.31!3.59!ZBTB1;;chr12:46123273..46123329,+!p3@ARID2!0.31!2.39!ARID2;;chr12:6798523..6798548,-!p6@ZNF384!0.31!2.39!ZNF384;;chr2:28616316..28616327,+!p5@FOSL2!0.31!2.39!FOSL2;;chr6:21597514..21597578,+!p4@SOX4!0.31!2.39!SOX4;;chr17:36861735..36861755,+!p4@MLLT6!0.31!2.39!MLLT6;;chr1:91487629..91487640,-!p7@ZNF644!0.31!2.39!ZNF644;;chr20:46130846..46130869,+!p5@NCOA3!0.31!1.20!NCOA3;;chr10:44144219..44144230,-!p5@ZNF32!0.31!1.20!ZNF32;;chr12:66218152..66218174,+!p10@HMGA2!0.31!1.20!HMGA2;;chr17:41623667..41623682,-!p8@ETV4!0.31!1.20!ETV4;;chr19:12721725..12721758,+!p1@ZNF791!0.30!31.13!ZNF791;;chr6:28109608..28109693,+!p1@ZNF192!0.30!29.93!ZNF192;;chr6:122720765..122720831,+!p1@HSF2!0.30!23.95!HSF2;;chr7:28725740..28725778,+!p1@CREB5!0.30!15.56!CREB5;;chr12:51157744..51157796,+!p2@ATF1!0.30!11.97!ATF1;;chr9:95640300..95640345,-!p1@ZNF484!0.30!9.58!ZNF484;;chr8:146228270..146228295,-!p1@ZNF252!0.30!9.58!ZNF252P;;chr19:35225121..35225175,+!p1@ZNF181!0.30!9.58!ZNF181;;chr8:144766617..144766664,+!p1@ZNF707!0.30!8.38!ZNF707;;chr6:35310363..35310382,+!p3@PPARD!0.30!5.99!PPARD;;chr1:154975258..154975330,+!p1@ZBTB7B!0.30!5.99!ZBTB7B;;chr1:205600919..205600982,-!p3@ELK4!0.30!5.99!ELK4;;chr3:44666551..44666577,+!p2@ZNF197!0.30!5.99!ZNF197;;chr4:76439649..76439662,+!p2@THAP6!0.30!3.59!THAP6;;chr12:133613937..133613994,+!p2@ZNF84!0.30!3.59!ZNF84;;chr15:67357992..67358009,+!p3@SMAD3!0.30!3.59!SMAD3;;chr17:42297282..42297300,-!p9@UBTF!0.30!2.39!UBTF;;chr19:20150029..20150078,-!p3@ZNF682!0.30!2.39!ZNF682;;chr19:37406934..37406949,-!p1@ZNF829!0.30!2.39!ZNF829;;chr3:150126038..150126052,+!p8@TSC22D2!0.30!2.39!TSC22D2;;chr3:21792585..21792625,-!p2@ZNF385D!0.30!1.20!ZNF385D;;chr3:71179785..71179810,-!p23@FOXP1!0.30!1.20!FOXP1;;chr15:37392534..37392562,-!p10@MEIS2!0.30!1.20!MEIS2;;chr15:76629097..76629120,+!p2@ISL2!0.30!1.20!ISL2;;chr15:96869511..96869525,+!p16@NR2F2!0.30!1.20!NR2F2;;chr19:20748603..20748606,-!p4@ZNF737!0.30!1.20!ZNF737;;chr19:39390667..39390678,+!p7@NFKBIB!0.30!1.20!NFKBIB;;chr19:39390697..39390713,+!p4@NFKBIB!0.30!1.20!NFKBIB;;chr19:52772811..52772817,+!p3@ZNF766!0.30!1.20!ZNF766;;chr5:92918860..92918871,+!p10@NR2F1!0.30!1.20!NR2F1;;chr7:14028488..14028516,-!p2@ETV1!0.30!1.20!ETV1;;chr7:1577111..1577132,+!p4@MAFK!0.30!1.20!MAFK;;chr10:38146482..38146507,-!p4@ZNF248!0.30!1.20!ZNF248;;chr11:46299186..46299195,+!p3@CREB3L1!0.30!1.20!CREB3L1;;chrX:118739835..118739862,-!p1@NKRF!0.30!1.20!NKRF;;chr12:95467267..95467350,-!p1@NR2C1!0.29!20.35!NR2C1;;chr6:41514078..41514158,+!p1@FOXP4!0.29!15.56!FOXP4;;chr1:41157266..41157314,+!p3@NFYC!0.29!14.37!NFYC;;chr8:135725249..135725292,-!p1@ZFAT!0.29!10.78!ZFAT;;chr8:28243661..28243709,-!p1@ZNF395!0.29!9.58!ZNF395;;chr19:50169013..50169062,-!p2@IRF3!0.29!9.58!IRF3;;chr3:40518599..40518664,+!p1@ZNF619!0.29!9.58!ZNF619;;chr9:3525968..3526016,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| |expression_enrichment_score=chr6:10412600..10412637,-!p1@TFAP2A!1.54!55.08!TFAP2A;;chr4:81118647..81118666,+!p1@PRDM8!1.52!41.91!PRDM8;;chr6:10412392..10412409,-!p4@TFAP2A!1.48!33.52!TFAP2A;;chr17:46703687..46703740,-!p1@HOXB9!1.44!26.34!HOXB9;;chr11:31832658..31832681,-!p1@PAX6!1.33!20.35!PAX6;;chr17:46688334..46688385,-!p1@HOXB7!1.29!26.34!HOXB7;;chr21:38071430..38071456,+!p1@SIM2!1.22!15.56!SIM2;;chr6:10415276..10415341,-!p2@TFAP2A!1.20!17.96!TFAP2A;;chr17:46682321..46682362,-!p1@HOXB6!1.15!13.17!HOXB6;;chr17:46806067..46806097,-!p1@HOXB13!1.15!13.17!HOXB13;;chr12:66218836..66218888,+!p1@HMGA2!1.13!117.34!HMGA2;;chr17:46687959..46688007,-!p2@HOXB7!1.12!16.76!HOXB7;;chr15:67418119..67418162,+!p5@SMAD3!1.11!13.17!SMAD3;;chr11:31832610..31832639,-!p5@PAX6!1.11!11.97!PAX6;;chr17:56065729..56065781,-!p2@VEZF1!1.10!50.29!VEZF1;;chr15:83953397..83953425,-!p1@BNC1!1.10!13.17!BNC1;;chr12:66218598..66218645,+!p2@HMGA2!1.06!49.09!HMGA2;;chr3:169381420..169381535,-!p1@MECOM!1.05!11.97!MECOM;;chr12:66218003..66218018,+!p9@HMGA2!1.03!11.97!HMGA2;;chr15:67418177..67418204,+!p9@SMAD3!1.02!9.58!SMAD3;;chr17:46703528..46703549,-!p5@HOXB9!1.02!9.58!HOXB9;;chr11:46299199..46299233,+!p1@CREB3L1!1.00!47.89!CREB3L1;;chr17:46655730..46655791,-!p1@HOXB4!1.00!22.75!HOXB4;;chr20:2673383..2673441,+!p1@EBF4!1.00!14.37!EBF4;;chr17:35294075..35294102,+!p1@ENST00000559335!0.97!8.38!LHX1;;chr10:28034739..28034756,-!p1@MKX!0.97!8.38!MKX;;chr2:42721205..42721307,+!p4@MTA3!0.97!8.38!MTA3;;chr6:10415484..10415508,-!p3@TFAP2A!0.97!8.38!TFAP2A;;chr8:23564065..23564087,-!p1@NKX2-6!0.97!8.38!NKX2-6;;chr1:25256756..25256774,-!p1@RUNX3!0.96!15.56!RUNX3;;chr5:150284532..150284549,-!p1@ZNF300!0.95!16.76!ZNF300;;chr12:80084737..80084763,-!p3@PAWR!0.94!29.93!PAWR;;chr5:176738887..176738934,-!p1@MXD3!0.93!52.68!MXD3;;chr9:114287433..114287513,+!p1@ZNF483!0.91!19.16!ZNF483;;chr17:41622731..41622764,-!p5@ETV4!0.91!7.18!ETV4;;chr17:46675558..46675577,-!p2@HOXB6!0.91!7.18!HOXB6;;chr4:109089095..109089144,-!p6@LEF1!0.91!7.18!LEF1;;chr11:46299539..46299620,+!p2@CREB3L1!0.90!11.97!CREB3L1;;chr7:6655225..6655279,+!p1@ENST00000457543!0.90!10.78!ZNF853;;chr15:67418047..67418093,+!p4@SMAD3!0.88!8.38!SMAD3;;chr12:124873852..124873881,-!p3@NCOR2!0.86!39.51!NCOR2;;chr15:96869114..96869160,+!p11@NR2F2!0.85!8.38!NR2F2;;chr12:77459306..77459365,-!p1@E2F7!0.84!79.02!E2F7;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.84!5.99!HOXC5;;chr14:69260437..69260442,-!p10@ZFP36L1!0.84!5.99!ZFP36L1;;chr6:10412576..10412599,-!p5@TFAP2A!0.84!5.99!TFAP2A;;chr7:35293685..35293718,-!p1@TBX20!0.84!5.99!TBX20;;chrY:2803415..2803468,+!p1@ZFY!0.84!5.99!ZFY;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.99!KDM5D;;chr12:80085061..80085119,-!p6@PAWR!0.83!9.58!PAWR;;chr6:85473156..85473210,-!p2@TBX18!0.83!7.18!TBX18;;chr12:27485785..27485816,+!p1@ARNTL2!0.82!41.91!ARNTL2;;chr17:41277372..41277418,-!p1@BRCA1!0.82!21.55!BRCA1;;chr20:42543506..42543549,+!p2@TOX2!0.82!14.37!TOX2;;chr12:80085255..80085284,-!p9@PAWR!0.82!8.38!PAWR;;chr12:27485823..27485868,+!p2@ARNTL2!0.81!23.95!ARNTL2;;chr11:65667884..65667895,-!p2@FOSL1!0.81!22.75!FOSL1;;chr6:34204921..34204939,+!p3@HMGA1!0.80!173.61!HMGA1;;chr9:132427972..132428056,+!p1@PRRX2!0.80!7.18!PRRX2;;chr18:19749517..19749531,+!p3@GATA6!0.79!9.58!GATA6;;chr8:72756667..72756736,-!p2@MSC!0.79!8.38!MSC;;chr17:46675420..46675465,-!p3@HOXB6!0.79!5.99!HOXB6;;chr7:74072135..74072171,+!p2@GTF2I!0.78!16.76!GTF2I;;chr12:66218255..66218304,+!p3@HMGA2!0.78!14.37!HMGA2;;chr17:41623259..41623278,-!p7@ETV4!0.78!5.99!ETV4;;chr19:35759824..35759891,+!p1@USF2!0.77!167.62!USF2;;chr9:127533519..127533573,-!p2@NR6A1!0.77!5.99!NR6A1;;chr5:137804405..137804444,+!p3@EGR1!0.77!5.99!EGR1;;chr12:54447599..54447630,+!p3@HOXC4!0.76!5.99!HOXC4;;chr11:31832862..31832884,-!p2@PAX6!0.76!4.79!PAX6;;chr14:29235961..29236008,+!p1@FOXG1!0.76!4.79!FOXG1;;chr17:41277334..41277348,-!p6@BRCA1!0.76!4.79!BRCA1;;chr17:46687935..46687950,-!p3@HOXB7!0.76!4.79!HOXB7;;chr17:48072574..48072597,-!p1@DLX3!0.76!4.79!DLX3;;chr19:47523058..47523114,+!p1@NPAS1!0.76!4.79!NPAS1;;chr21:38071403..38071428,+!p2@SIM2!0.76!4.79!SIM2;;chr2:172949484..172949522,+!p1@DLX1!0.76!4.79!DLX1;;chr6:10412477..10412490,-!p10@TFAP2A!0.76!4.79!TFAP2A;;chr7:1577899..1577943,+!p3@MAFK!0.76!4.79!MAFK;;chr9:16705069..16705086,-!p3@BNC2!0.76!4.79!BNC2;;chr8:67525443..67525459,-!p2@MYBL1!0.75!7.18!MYBL1;;chr5:321810..321877,+!p1@AHRR!0.74!15.56!AHRR;;chr20:50179368..50179392,-!p2@NFATC2!0.74!5.99!NFATC2;;chr6:45389791..45389832,+!p3@RUNX2!0.73!11.97!RUNX2;;chr15:96874012..96874042,+!p2@NR2F2!0.72!43.10!NR2F2;;chr21:27107259..27107299,+!p1@GABPA!0.72!27.54!GABPA;;chr9:130954041..130954121,-!p2@CIZ1!0.72!20.35!CIZ1;;chr19:37019569..37019593,-!p2@ZNF260!0.72!7.18!ZNF260;;chr19:38146320..38146401,-!p1@ZFP30!0.71!25.14!ZFP30;;chrX:70503037..70503095,+!p3@NONO!0.71!7.18!NONO;;chr12:2986275..2986363,-!p1@FOXM1!0.70!45.50!FOXM1;;chr8:77593474..77593612,+!p1@ZFHX4!0.70!19.16!ZFHX4;;chr13:45011349..45011391,-!p4@TSC22D1!0.70!10.78!TSC22D1;;chr12:66218183..66218209,+!p4@HMGA2!0.70!8.38!HMGA2;;chr19:42788636..42788660,+!p1@CIC!0.70!7.18!CIC;;chr19:37329254..37329295,-!p1@ZNF790!0.69!10.78!ZNF790;;chr15:37390850..37390909,-!p3@MEIS2!0.69!8.38!MEIS2;;chr1:53019059..53019176,-!p2@ZCCHC11!0.68!38.31!ZCCHC11;;chr4:1873011..1873063,+!p2@WHSC1!0.68!14.37!WHSC1;;chr8:67525473..67525518,-!p1@MYBL1!0.68!9.58!MYBL1;;chr12:66218573..66218596,+!p7@HMGA2!0.68!5.99!HMGA2;;chr19:37096194..37096235,+!p1@ZNF382!0.67!13.17!ZNF382;;chr8:106330656..106330684,+!p1@ZFPM2!0.67!10.78!ZFPM2;;chr3:141087144..141087170,+!p11@ZBTB38!0.67!4.79!ZBTB38;;chr19:38720294..38720348,-!p1@DPF1!0.67!4.79!DPF1;;chr17:46125707..46125746,+!p2@NFE2L1!0.66!221.50!NFE2L1;;chr14:68283291..68283323,-!p1@ZFYVE26!0.66!68.25!ZFYVE26;;chr6:20402102..20402152,+!p1@E2F3!0.66!16.76!E2F3;;chr2:200323414..200323455,-!p1@SATB2!0.66!8.38!SATB2;;chr20:50721803..50721857,-!p2@ZFP64!0.66!5.99!ZFP64;;chr1:44513995..44514031,+!p1@KLF17!0.66!3.59!KLF17;;chr20:42602000..42602034,+!p5@TOX2!0.66!3.59!TOX2;;chr21:38071462..38071474,+!p3@SIM2!0.66!3.59!SIM2;;chr2:45169193..45169219,+!p3@SIX3!0.66!3.59!SIX3;;chr2:95963052..95963106,+!p1@KCNIP3!0.66!3.59!KCNIP3;;chr10:28034772..28034783,-!p4@MKX!0.66!3.59!MKX;;chr11:31832807..31832823,-!p4@PAX6!0.66!3.59!PAX6;;chr12:115122303..115122314,-!p6@TBX3!0.66!3.59!TBX3;;chr12:124873824..124873833,-!p19@NCOR2!0.66!3.59!NCOR2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.66!3.59!HOXC5;;chr12:66218904..66218913,+!p11@HMGA2!0.66!3.59!HMGA2;;chr12:69753583..69753598,+!p2@YEATS4!0.66!3.59!YEATS4;;chr9:126774018..126774055,+!p1@LHX2!0.66!3.59!LHX2;;chr6:10415263..10415274,-!p8@TFAP2A!0.66!3.59!TFAP2A;;chr6:41701557..41701578,-!p3@TFEB!0.66!3.59!TFEB;;chr7:27196267..27196311,-!p1@HOXA7!0.66!3.59!HOXA7;;chr8:77593448..77593471,+!p2@ZFHX4!0.66!3.59!ZFHX4;;chr15:67418099..67418118,+!p16@SMAD3!0.66!3.59!SMAD3;;chr15:96869165..96869183,+!p20@NR2F2!0.66!3.59!NR2F2;;chr17:46675586..46675600,-!p6@HOXB6!0.66!3.59!HOXB6;;chr17:46703942..46703964,-!p4@HOXB9!0.66!3.59!HOXB9;;chr17:46806419..46806438,-!p4@HOXB13!0.66!3.59!HOXB13;;chr19:40562072..40562143,-!p1@ZNF780B!0.65!37.12!ZNF780B;;chr11:76092097..76092183,-!p1@PRKRIR!0.65!32.33!PRKRIR;;chr7:64838786..64838809,+!p2@ZNF92!0.65!22.75!ZNF92;;chr7:99070527..99070542,+!p2@ZNF789!0.65!8.38!ZNF789;;chr6:31869828..31869880,-!p1@ZBTB12!0.65!7.18!ZBTB12;;chr15:80696703..80696754,+!p1@ARNT2!0.65!4.79!ARNT2;;chr19:18391615..18391637,-!p5@JUND!0.65!4.79!JUND;;chr19:36909528..36909581,-!p1@ZFP82!0.64!17.96!ZFP82;;chr3:185826764..185826803,-!p2@ETV5!0.64!14.37!ETV5;;chr1:151032922..151032951,+!p2@MLLT11!0.64!5.99!MLLT11;;chr5:72744445..72744466,-!p2@FOXD1!0.64!5.99!FOXD1;;chr6:21597600..21597664,+!p3@SOX4!0.64!5.99!SOX4;;chr12:80084279..80084293,-!p8@PAWR!0.64!5.99!PAWR;;chr9:4299979..4299996,-!p3@GLIS3!0.64!5.99!GLIS3;;chr14:55493763..55493824,-!p1@WDHD1!0.63!28.74!WDHD1;;chr12:3068544..3068597,+!p1@TEAD4!0.63!22.75!TEAD4;;chr3:114343768..114343822,-!p1@ZBTB20!0.63!16.76!ZBTB20;;chr19:38085633..38085706,-!p1@ZNF571!0.63!9.58!ZNF571;;chr8:23540441..23540466,-!p1@NKX3-1!0.63!7.18!NKX3-1;;chr3:157823517..157823562,-!p1@SHOX2!0.63!3.59!SHOX2;;chr19:1592714..1592762,-!p1@MBD3!0.62!28.74!MBD3;;chr12:80084167..80084197,-!p5@PAWR!0.62!8.38!PAWR;;chr12:125002827..125002855,-!p5@NCOR2!0.62!4.79!NCOR2;;chr15:96876340..96876348,+!p22@NR2F2!0.62!3.59!NR2F2;;chr1:67395922..67395976,+!p2@MIER1!0.61!35.92!MIER1;;chr17:41623692..41623715,-!p1@ETV4!0.61!15.56!ETV4;;chr15:96874244..96874259,+!p5@NR2F2!0.61!8.38!NR2F2;;chr19:37407172..37407217,-!p2@ZNF829!0.61!5.99!ZNF829;;chr6:85474299..85474324,-!p1@TBX18!0.61!5.99!TBX18;;chr18:53068911..53068935,-!p4@TCF4!0.61!3.59!TCF4;;chr19:40503013..40503044,+!p3@ZNF546!0.61!3.59!ZNF546;;chr19:10305581..10305646,-!p1@DNMT1!0.60!125.72!DNMT1;;chr17:45973586..45973618,+!p1@SP2!0.60!56.27!SP2;;chr5:43120995..43121052,+!p1@ZNF131!0.60!17.96!ZNF131;;chrX:84499081..84499115,+!p2@ZNF711!0.60!4.79!ZNF711;;chr10:8095593..8095625,+!p3@GATA3!0.60!3.59!GATA3;;chr7:99679311..99679322,-!p3@ZNF3!0.60!3.59!ZNF3;;chr3:37217544..37217586,-!p6@LRRFIP2!0.60!3.59!LRRFIP2;;chr13:114238997..114239077,+!p1@TFDP1!0.59!180.79!TFDP1;;chr17:70117153..70117174,+!p1@SOX9!0.59!35.92!SOX9;;chr7:19157043..19157088,-!p2@TWIST1!0.59!8.38!TWIST1;;chr20:32274150..32274166,-!p2@E2F1!0.59!5.99!E2F1;;chr17:46620898..46620927,-!p9@HOXB2!0.59!3.59!HOXB2;;chr20:42295745..42295765,+!p1@MYBL2!0.58!56.27!MYBL2;;chrX:128657413..128657456,-!p2@SMARCA1!0.58!29.93!SMARCA1;;chr20:32274179..32274213,-!p1@E2F1!0.58!22.75!E2F1;;chr19:37157713..37157760,-!p1@ZNF461!0.58!19.16!ZNF461;;chr21:36421535..36421610,-!p2@RUNX1!0.58!11.97!RUNX1;;chr9:37465273..37465338,-!p2@ZBTB5!0.58!8.38!ZBTB5;;chr11:120107344..120107351,+!p1@POU2F3!0.58!3.59!POU2F3;;chr15:37392576..37392589,-!p12@MEIS2!0.58!3.59!MEIS2;;chr17:41622834..41622883,-!p6@ETV4!0.58!3.59!ETV4;;chr6:34205372..34205412,+!p5@HMGA1!0.57!16.76!HMGA1;;chr20:39946361..39946379,-!p2@ZHX3!0.57!9.58!ZHX3;;chr22:22863052..22863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X1!0.33!2.39!RUNX1;;chr6:27356745..27356777,+!p1@ZNF391!0.33!2.39!ZNF391;;chr7:86781858..86781879,+!p3@DMTF1!0.33!2.39!DMTF1;;chr7:99613195..99613206,+!p4@ZKSCAN1!0.33!2.39!ZKSCAN1;;chr2:85980951..85981004,+!p1@ATOH8!0.33!2.39!ATOH8;;chr10:3824332..3824425,-!p4@KLF6!0.33!2.39!KLF6;;chr12:56575310..56575344,-!p3@SMARCC2!0.33!2.39!SMARCC2;;chr15:96875657..96875760,+!p14@NR2F2!0.33!2.39!NR2F2;;chr19:12476443..12476467,-!p1@ZNF442!0.33!2.39!ZNF442;;chr19:36980756..36980795,-!p3@ZNF566!0.33!2.39!ZNF566;;chr4:57774042..57774114,+!p1@REST!0.32!45.50!REST;;chr3:170075436..170075520,+!p1@SKIL!0.32!40.71!SKIL;;chr17:40440481..40440550,+!p1@STAT5A!0.32!13.17!STAT5A;;chr1:120190786..120190915,-!p1@ZNF697!0.32!13.17!ZNF697;;chr19:18392236..18392248,-!p2@JUND!0.32!11.97!JUND;;chr19:12721513..12721572,-!p1@ZNF490!0.32!7.18!ZNF490;;chr10:38146510..38146576,-!p1@ZNF248!0.32!4.79!ZNF248;;chr16:8962544..8962584,-!p2@CARHSP1!0.32!3.59!CARHSP1;;chr19:21203481..21203504,+!p2@ZNF430!0.32!3.59!ZNF430;;chr17:79885633..79885645,-!p4@MAFG!0.32!2.39!MAFG;;chr19:23941647..23941672,-!p2@ZNF681!0.32!2.39!ZNF681;;chr5:172484377..172484418,+!p2@C5orf41!0.32!2.39!CREBRF;;chr10:22292675..22292686,-!p3@DNAJC1!0.32!2.39!DNAJC1;;chr12:133707021..133707071,-!p2@ZNF891!0.32!2.39!ZNF891;;chr14:69259772..69259790,-!p1@ZFP36L1!0.31!191.57!ZFP36L1;;chr5:149380256..149380343,+!p1@HMGXB3!0.31!53.88!HMGXB3;;chr19:36706024..36706049,+!p1@ZNF146!0.31!32.33!ZNF146;;chr19:17356697..17356762,-!p1@NR2F6!0.31!25.14!NR2F6;;chr18:51750839..51750885,-!p2@MBD2!0.31!17.96!MBD2;;chr9:88969303..88969335,-!p1@ZCCHC6!0.31!16.76!ZCCHC6;;chr1:44679113..44679152,+!p1@DMAP1!0.31!14.37!DMAP1;;chr9:35732647..35732678,+!p2@CREB3!0.31!9.58!CREB3;;chr3:44519131..44519186,-!p1@ZNF445!0.31!9.58!ZNF445;;chr9:116638565..116638606,+!p1@ZNF618!0.31!7.18!ZNF618;;chr8:144373550..144373617,+!p1@ZNF696!0.31!5.99!ZNF696;;chr2:174828836..174828885,-!p5@SP3!0.31!5.99!SP3;;chr3:150126416..150126437,+!p3@TSC22D2!0.31!5.99!TSC22D2;;chr9:3525910..3525955,-!p4@RFX3!0.31!4.79!RFX3;;chr20:3388579..3388619,-!p3@C20orf194!0.31!3.59!C20orf194;;chr15:74833584..74833626,+!p1@ARID3B!0.31!3.59!ARID3B;;chr14:64971438..64971450,+!p2@ZBTB1!0.31!3.59!ZBTB1;;chr12:46123273..46123329,+!p3@ARID2!0.31!2.39!ARID2;;chr12:6798523..6798548,-!p6@ZNF384!0.31!2.39!ZNF384;;chr2:28616316..28616327,+!p5@FOSL2!0.31!2.39!FOSL2;;chr6:21597514..21597578,+!p4@SOX4!0.31!2.39!SOX4;;chr17:36861735..36861755,+!p4@MLLT6!0.31!2.39!MLLT6;;chr1:91487629..91487640,-!p7@ZNF644!0.31!2.39!ZNF644;;chr20:46130846..46130869,+!p5@NCOA3!0.31!1.20!NCOA3;;chr10:44144219..44144230,-!p5@ZNF32!0.31!1.20!ZNF32;;chr12:66218152..66218174,+!p10@HMGA2!0.31!1.20!HMGA2;;chr17:41623667..41623682,-!p8@ETV4!0.31!1.20!ETV4;;chr19:12721725..12721758,+!p1@ZNF791!0.30!31.13!ZNF791;;chr6:28109608..28109693,+!p1@ZNF192!0.30!29.93!ZNF192;;chr6:122720765..122720831,+!p1@HSF2!0.30!23.95!HSF2;;chr7:28725740..28725778,+!p1@CREB5!0.30!15.56!CREB5;;chr12:51157744..51157796,+!p2@ATF1!0.30!11.97!ATF1;;chr9:95640300..95640345,-!p1@ZNF484!0.30!9.58!ZNF484;;chr8:146228270..146228295,-!p1@ZNF252!0.30!9.58!ZNF252P;;chr19:35225121..35225175,+!p1@ZNF181!0.30!9.58!ZNF181;;chr8:144766617..144766664,+!p1@ZNF707!0.30!8.38!ZNF707;;chr6:35310363..35310382,+!p3@PPARD!0.30!5.99!PPARD;;chr1:154975258..154975330,+!p1@ZBTB7B!0.30!5.99!ZBTB7B;;chr1:205600919..205600982,-!p3@ELK4!0.30!5.99!ELK4;;chr3:44666551..44666577,+!p2@ZNF197!0.30!5.99!ZNF197;;chr4:76439649..76439662,+!p2@THAP6!0.30!3.59!THAP6;;chr12:133613937..133613994,+!p2@ZNF84!0.30!3.59!ZNF84;;chr15:67357992..67358009,+!p3@SMAD3!0.30!3.59!SMAD3;;chr17:42297282..42297300,-!p9@UBTF!0.30!2.39!UBTF;;chr19:20150029..20150078,-!p3@ZNF682!0.30!2.39!ZNF682;;chr19:37406934..37406949,-!p1@ZNF829!0.30!2.39!ZNF829;;chr3:150126038..150126052,+!p8@TSC22D2!0.30!2.39!TSC22D2;;chr3:21792585..21792625,-!p2@ZNF385D!0.30!1.20!ZNF385D;;chr3:71179785..71179810,-!p23@FOXP1!0.30!1.20!FOXP1;;chr15:37392534..37392562,-!p10@MEIS2!0.30!1.20!MEIS2;;chr15:76629097..76629120,+!p2@ISL2!0.30!1.20!ISL2;;chr15:96869511..96869525,+!p16@NR2F2!0.30!1.20!NR2F2;;chr19:20748603..20748606,-!p4@ZNF737!0.30!1.20!ZNF737;;chr19:39390667..39390678,+!p7@NFKBIB!0.30!1.20!NFKBIB;;chr19:39390697..39390713,+!p4@NFKBIB!0.30!1.20!NFKBIB;;chr19:52772811..52772817,+!p3@ZNF766!0.30!1.20!ZNF766;;chr5:92918860..92918871,+!p10@NR2F1!0.30!1.20!NR2F1;;chr7:14028488..14028516,-!p2@ETV1!0.30!1.20!ETV1;;chr7:1577111..1577132,+!p4@MAFK!0.30!1.20!MAFK;;chr10:38146482..38146507,-!p4@ZNF248!0.30!1.20!ZNF248;;chr11:46299186..46299195,+!p3@CREB3L1!0.30!1.20!CREB3L1;;chrX:118739835..118739862,-!p1@NKRF!0.30!1.20!NKRF;;chr12:95467267..95467350,-!p1@NR2C1!0.29!20.35!NR2C1;;chr6:41514078..41514158,+!p1@FOXP4!0.29!15.56!FOXP4;;chr1:41157266..41157314,+!p3@NFYC!0.29!14.37!NFYC;;chr8:135725249..135725292,-!p1@ZFAT!0.29!10.78!ZFAT;;chr8:28243661..28243709,-!p1@ZNF395!0.29!9.58!ZNF395;;chr19:50169013..50169062,-!p2@IRF3!0.29!9.58!IRF3;;chr3:40518599..40518664,+!p1@ZNF619!0.29!9.58!ZNF619;;chr9:3525968..3526016,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| ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/lens%2520epithelial%2520cell%2520line%253aSRA%252001%252f04.CNhs11750.10647-109A8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10647-109A8 | |id=FF:10647-109A8 | ||
|is_a=CL:0002224;;EFO:0002091;;FF:0000210;;FF:0103071 | |is_a=CL:0002224;;EFO:0002091;;FF:0000210;;FF:0103071 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11750 | |||
|library_id_phase_based=2:CNhs11750 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10647 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10647 | |||
|name=lens epithelial cell line:SRA 01/04 | |name=lens epithelial cell line:SRA 01/04 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11750,LSID819,release009,COMPLETED | |profile_hcage=CNhs11750,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.067056436129675,0.203723632538546,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188566723987338,0,0,0,0,0,-0.0979578962680575,0,0,0.208933144556903,0,0,0,0,0,0,0,0,0,0,0.53078909704316,0,-0.145899716966013,0,0,0,0,0,0,0,0,0.306781461479299,0,0,0,0,0,0.0634402668484127,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0475048059928952,0,0,0,0.146347305356206,-0.040252535527986,0.170944867167883,0,0,0,-0.0980353512377064,0.242832363329551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.074571273245422,0,0,0,0,0.096868194675037,0,0,0,0,0,0 | |||
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| |||
|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 77: | ||
|rna_weight_ug=21.17162 | |rna_weight_ug=21.17162 | ||
|sample_age=3 months | |sample_age=3 months | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1591 | |sample_cell_catalog=RCB1591 | ||
|sample_cell_line=SRA 01/04 | |sample_cell_line=SRA 01/04 | ||
| Line 79: | Line 99: | ||
|top_motifs=E2F1..5:1.37233823133;RXR{A,B,G}:1.33047277231;POU1F1:1.26195268986;GFI1:1.15946924817;TFDP1:1.12204384832;NKX2-3_NKX2-5:1.06124843827;PAX1,9:0.864068453272;FOXQ1:0.842933866292;ZBTB6:0.809529412008;POU3F1..4:0.776421135483;ZNF143:0.762227515936;TFAP2B:0.748848631532;NKX3-1:0.711699445801;ARID5B:0.709438069694;ONECUT1,2:0.691691975956;PAX6:0.690742648311;NRF1:0.690212928583;TFAP2{A,C}:0.634579483249;bHLH_family:0.62651635538;BREu{core}:0.583759296599;ALX1:0.563028061443;HOX{A5,B5}:0.562709954134;CDC5L:0.550732462143;FOX{I1,J2}:0.546378788789;RFX1:0.545537748571;CDX1,2,4:0.537331814549;EGR1..3:0.479065118073;MYB:0.463642124101;GFI1B:0.459993875319;SOX2:0.455249607221;HOXA9_MEIS1:0.444398040557;PDX1:0.441308883688;TAL1_TCF{3,4,12}:0.44119165569;DMAP1_NCOR{1,2}_SMARC:0.438983902977;FOXP3:0.432798346078;NFIX:0.428215618942;RORA:0.427142228038;NKX6-1,2:0.419803078385;RBPJ:0.411627400552;SREBF1,2:0.40744335375;NFY{A,B,C}:0.394594481375;ADNP_IRX_SIX_ZHX:0.390119606992;TEAD1:0.378660367948;XCPE1{core}:0.368988370629;FOXN1:0.339475811017;ZNF384:0.317897333557;PPARG:0.317119412126;FOXD3:0.305458697591;STAT1,3:0.301155685787;MYOD1:0.292041944684;FOX{D1,D2}:0.287263038773;TFCP2:0.267854258154;GZF1:0.264382685424;HIC1:0.262102103606;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.260678561791;CUX2:0.236204154284;TBX4,5:0.231234178312;NANOG:0.227750529891;HSF1,2:0.226147985107;ELK1,4_GABP{A,B1}:0.224110954075;VSX1,2:0.223765975893;BACH2:0.214589138905;MZF1:0.195085362466;MED-1{core}:0.182037372679;HOX{A4,D4}:0.179665799492;OCT4_SOX2{dimer}:0.16579641085;FOX{F1,F2,J1}:0.164747345788;MTF1:0.163631882642;HMGA1,2:0.15827336301;HAND1,2:0.152176244983;FOXM1:0.15170925335;GTF2I:0.149157794006;PRRX1,2:0.141106935726;TP53:0.139694957859;PITX1..3:0.135604990828;T:0.12841165897;BPTF:0.113891971359;HBP1_HMGB_SSRP1_UBTF:0.104988190912;EVI1:0.104222854074;LMO2:0.101106756188;PAX4:0.100556609441;NR3C1:0.0957546553053;ESRRA:0.09234443675;ZBTB16:0.0875592897409;FOS_FOS{B,L1}_JUN{B,D}:0.0705185126281;HNF1A:0.0578062965357;GTF2A1,2:0.0556514223398;AIRE:0.0528112621192;ATF4:0.0506045134683;NFE2L2:0.0462395669203;STAT5{A,B}:0.0462354949115;TLX1..3_NFIC{dimer}:0.0451401493542;SOX{8,9,10}:0.010205987712;NFATC1..3:0.0093282883263;SOX17:0.00791585471534;ZFP161:0.00706007288248;PAX8:-0.00512300764124;PRDM1:-0.0161884921868;MAZ:-0.0276509421279;DBP:-0.0277167918432;GATA6:-0.0366584910975;FOXA2:-0.0535757437249;CRX:-0.054930393049;ZNF148:-0.0632434071086;NFE2:-0.0673246690051;HNF4A_NR2F1,2:-0.0690109122886;NR1H4:-0.0772025815441;NFIL3:-0.0811320904787;LEF1_TCF7_TCF7L1,2:-0.0815777375885;NKX3-2:-0.0839498017849;HLF:-0.0970917363588;FOSL2:-0.105311593648;SPZ1:-0.105493398274;NKX2-1,4:-0.110740332576;NFKB1_REL_RELA:-0.119386050084;PBX1:-0.120397511609;POU2F1..3:-0.12454999949;PATZ1:-0.125787086605;AHR_ARNT_ARNT2:-0.159171024033;MYBL2:-0.16795517979;AR:-0.168253771362;FOXO1,3,4:-0.169889140878;RUNX1..3:-0.173520632675;NFE2L1:-0.17391585785;NHLH1,2:-0.176148302906;PAX3,7:-0.17723192358;GCM1,2:-0.193632227923;EN1,2:-0.21544758008;IRF7:-0.21950816211;HIF1A:-0.222412352102;STAT2,4,6:-0.226434624489;SNAI1..3:-0.22811685061;SMAD1..7,9:-0.234662193194;ZNF238:-0.238985693755;RXRA_VDR{dimer}:-0.25416775799;TEF:-0.256860816538;POU5F1:-0.259671466857;POU6F1:-0.277441643022;SPIB:-0.295842711069;SRF:-0.297196127212;JUN:-0.298875441311;MYFfamily:-0.300503228746;NR6A1:-0.301638900131;HOX{A6,A7,B6,B7}:-0.313607437014;SP1:-0.313884956887;XBP1:-0.315287272877;SOX5:-0.316153217582;ZEB1:-0.319615040292;LHX3,4:-0.331075645364;CEBPA,B_DDIT3:-0.335995329941;ATF2:-0.339535067429;ZIC1..3:-0.343309135937;MEF2{A,B,C,D}:-0.347782717871;GATA4:-0.348923471779;TOPORS:-0.356405847707;ATF5_CREB3:-0.362978619122;REST:-0.382892857839;ETS1,2:-0.402090102648;GLI1..3:-0.402977879736;IKZF2:-0.409073793494;FOXP1:-0.410039792311;SPI1:-0.421808339416;TFAP4:-0.428225531529;IKZF1:-0.431094741802;YY1:-0.466621447855;RREB1:-0.470426616313;UFEwm:-0.474885855092;NR5A1,2:-0.482256299855;KLF4:-0.518151972812;ZNF423:-0.526973603581;RFX2..5_RFXANK_RFXAP:-0.530472742728;HMX1:-0.531238946351;IRF1,2:-0.565821359369;PAX5:-0.568164268803;MTE{core}:-0.57889608048;ELF1,2,4:-0.587700004387;PAX2:-0.602160328176;ESR1:-0.605924770834;MAFB:-0.654619253723;TGIF1:-0.701995991754;NANOG{mouse}:-0.70911106232;EBF1:-0.719638865614;CREB1:-0.726789260439;NKX2-2,8:-0.747906797141;TBP:-0.834623115156;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.897847768788;ATF6:-1.00733764525;FOXL1:-1.1541460828;TLX2:-1.2459923268;ALX4:-1.30152158989;HES1:-1.34167174031;EP300:-1.44851587657 | |top_motifs=E2F1..5:1.37233823133;RXR{A,B,G}:1.33047277231;POU1F1:1.26195268986;GFI1:1.15946924817;TFDP1:1.12204384832;NKX2-3_NKX2-5:1.06124843827;PAX1,9:0.864068453272;FOXQ1:0.842933866292;ZBTB6:0.809529412008;POU3F1..4:0.776421135483;ZNF143:0.762227515936;TFAP2B:0.748848631532;NKX3-1:0.711699445801;ARID5B:0.709438069694;ONECUT1,2:0.691691975956;PAX6:0.690742648311;NRF1:0.690212928583;TFAP2{A,C}:0.634579483249;bHLH_family:0.62651635538;BREu{core}:0.583759296599;ALX1:0.563028061443;HOX{A5,B5}:0.562709954134;CDC5L:0.550732462143;FOX{I1,J2}:0.546378788789;RFX1:0.545537748571;CDX1,2,4:0.537331814549;EGR1..3:0.479065118073;MYB:0.463642124101;GFI1B:0.459993875319;SOX2:0.455249607221;HOXA9_MEIS1:0.444398040557;PDX1:0.441308883688;TAL1_TCF{3,4,12}:0.44119165569;DMAP1_NCOR{1,2}_SMARC:0.438983902977;FOXP3:0.432798346078;NFIX:0.428215618942;RORA:0.427142228038;NKX6-1,2:0.419803078385;RBPJ:0.411627400552;SREBF1,2:0.40744335375;NFY{A,B,C}:0.394594481375;ADNP_IRX_SIX_ZHX:0.390119606992;TEAD1:0.378660367948;XCPE1{core}:0.368988370629;FOXN1:0.339475811017;ZNF384:0.317897333557;PPARG:0.317119412126;FOXD3:0.305458697591;STAT1,3:0.301155685787;MYOD1:0.292041944684;FOX{D1,D2}:0.287263038773;TFCP2:0.267854258154;GZF1:0.264382685424;HIC1:0.262102103606;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.260678561791;CUX2:0.236204154284;TBX4,5:0.231234178312;NANOG:0.227750529891;HSF1,2:0.226147985107;ELK1,4_GABP{A,B1}:0.224110954075;VSX1,2:0.223765975893;BACH2:0.214589138905;MZF1:0.195085362466;MED-1{core}:0.182037372679;HOX{A4,D4}:0.179665799492;OCT4_SOX2{dimer}:0.16579641085;FOX{F1,F2,J1}:0.164747345788;MTF1:0.163631882642;HMGA1,2:0.15827336301;HAND1,2:0.152176244983;FOXM1:0.15170925335;GTF2I:0.149157794006;PRRX1,2:0.141106935726;TP53:0.139694957859;PITX1..3:0.135604990828;T:0.12841165897;BPTF:0.113891971359;HBP1_HMGB_SSRP1_UBTF:0.104988190912;EVI1:0.104222854074;LMO2:0.101106756188;PAX4:0.100556609441;NR3C1:0.0957546553053;ESRRA:0.09234443675;ZBTB16:0.0875592897409;FOS_FOS{B,L1}_JUN{B,D}:0.0705185126281;HNF1A:0.0578062965357;GTF2A1,2:0.0556514223398;AIRE:0.0528112621192;ATF4:0.0506045134683;NFE2L2:0.0462395669203;STAT5{A,B}:0.0462354949115;TLX1..3_NFIC{dimer}:0.0451401493542;SOX{8,9,10}:0.010205987712;NFATC1..3:0.0093282883263;SOX17:0.00791585471534;ZFP161:0.00706007288248;PAX8:-0.00512300764124;PRDM1:-0.0161884921868;MAZ:-0.0276509421279;DBP:-0.0277167918432;GATA6:-0.0366584910975;FOXA2:-0.0535757437249;CRX:-0.054930393049;ZNF148:-0.0632434071086;NFE2:-0.0673246690051;HNF4A_NR2F1,2:-0.0690109122886;NR1H4:-0.0772025815441;NFIL3:-0.0811320904787;LEF1_TCF7_TCF7L1,2:-0.0815777375885;NKX3-2:-0.0839498017849;HLF:-0.0970917363588;FOSL2:-0.105311593648;SPZ1:-0.105493398274;NKX2-1,4:-0.110740332576;NFKB1_REL_RELA:-0.119386050084;PBX1:-0.120397511609;POU2F1..3:-0.12454999949;PATZ1:-0.125787086605;AHR_ARNT_ARNT2:-0.159171024033;MYBL2:-0.16795517979;AR:-0.168253771362;FOXO1,3,4:-0.169889140878;RUNX1..3:-0.173520632675;NFE2L1:-0.17391585785;NHLH1,2:-0.176148302906;PAX3,7:-0.17723192358;GCM1,2:-0.193632227923;EN1,2:-0.21544758008;IRF7:-0.21950816211;HIF1A:-0.222412352102;STAT2,4,6:-0.226434624489;SNAI1..3:-0.22811685061;SMAD1..7,9:-0.234662193194;ZNF238:-0.238985693755;RXRA_VDR{dimer}:-0.25416775799;TEF:-0.256860816538;POU5F1:-0.259671466857;POU6F1:-0.277441643022;SPIB:-0.295842711069;SRF:-0.297196127212;JUN:-0.298875441311;MYFfamily:-0.300503228746;NR6A1:-0.301638900131;HOX{A6,A7,B6,B7}:-0.313607437014;SP1:-0.313884956887;XBP1:-0.315287272877;SOX5:-0.316153217582;ZEB1:-0.319615040292;LHX3,4:-0.331075645364;CEBPA,B_DDIT3:-0.335995329941;ATF2:-0.339535067429;ZIC1..3:-0.343309135937;MEF2{A,B,C,D}:-0.347782717871;GATA4:-0.348923471779;TOPORS:-0.356405847707;ATF5_CREB3:-0.362978619122;REST:-0.382892857839;ETS1,2:-0.402090102648;GLI1..3:-0.402977879736;IKZF2:-0.409073793494;FOXP1:-0.410039792311;SPI1:-0.421808339416;TFAP4:-0.428225531529;IKZF1:-0.431094741802;YY1:-0.466621447855;RREB1:-0.470426616313;UFEwm:-0.474885855092;NR5A1,2:-0.482256299855;KLF4:-0.518151972812;ZNF423:-0.526973603581;RFX2..5_RFXANK_RFXAP:-0.530472742728;HMX1:-0.531238946351;IRF1,2:-0.565821359369;PAX5:-0.568164268803;MTE{core}:-0.57889608048;ELF1,2,4:-0.587700004387;PAX2:-0.602160328176;ESR1:-0.605924770834;MAFB:-0.654619253723;TGIF1:-0.701995991754;NANOG{mouse}:-0.70911106232;EBF1:-0.719638865614;CREB1:-0.726789260439;NKX2-2,8:-0.747906797141;TBP:-0.834623115156;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.897847768788;ATF6:-1.00733764525;FOXL1:-1.1541460828;TLX2:-1.2459923268;ALX4:-1.30152158989;HES1:-1.34167174031;EP300:-1.44851587657 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10647-109A8;search_select_hide=table117:FF:10647-109A8 | |||
}} | }} | ||
Latest revision as of 14:32, 3 June 2020
| Name: | lens epithelial cell line:SRA 01/04 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11750 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11750
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11750
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0612 |
| 10 | 10 | 0.227 |
| 100 | 100 | 0.986 |
| 101 | 101 | 0.328 |
| 102 | 102 | 0.161 |
| 103 | 103 | 0.757 |
| 104 | 104 | 0.81 |
| 105 | 105 | 0.767 |
| 106 | 106 | 0.00729 |
| 107 | 107 | 0.313 |
| 108 | 108 | 0.791 |
| 109 | 109 | 0.716 |
| 11 | 11 | 0.248 |
| 110 | 110 | 0.227 |
| 111 | 111 | 0.424 |
| 112 | 112 | 0.123 |
| 113 | 113 | 0.00403 |
| 114 | 114 | 0.15 |
| 115 | 115 | 0.409 |
| 116 | 116 | 0.0843 |
| 117 | 117 | 0.3 |
| 118 | 118 | 0.966 |
| 119 | 119 | 0.123 |
| 12 | 12 | 0.864 |
| 120 | 120 | 0.283 |
| 121 | 121 | 0.327 |
| 122 | 122 | 0.18 |
| 123 | 123 | 0.0632 |
| 124 | 124 | 0.262 |
| 125 | 125 | 0.554 |
| 126 | 126 | 0.0687 |
| 127 | 127 | 0.747 |
| 128 | 128 | 0.0179 |
| 129 | 129 | 0.409 |
| 13 | 13 | 0.297 |
| 130 | 130 | 0.16 |
| 131 | 131 | 0.0332 |
| 132 | 132 | 0.502 |
| 133 | 133 | 0.635 |
| 134 | 134 | 0.395 |
| 135 | 135 | 0.00808 |
| 136 | 136 | 0.857 |
| 137 | 137 | 0.31 |
| 138 | 138 | 0.856 |
| 139 | 139 | 0.0202 |
| 14 | 14 | 0.509 |
| 140 | 140 | 0.209 |
| 141 | 141 | 0.956 |
| 142 | 142 | 0.881 |
| 143 | 143 | 0.524 |
| 144 | 144 | 0.983 |
| 145 | 145 | 0.233 |
| 146 | 146 | 0.983 |
| 147 | 147 | 0.456 |
| 148 | 148 | 1.16048e-4 |
| 149 | 149 | 0.06 |
| 15 | 15 | 0.397 |
| 150 | 150 | 0.569 |
| 151 | 151 | 0.309 |
| 152 | 152 | 0.131 |
| 153 | 153 | 0.112 |
| 154 | 154 | 0.713 |
| 155 | 155 | 0.283 |
| 156 | 156 | 0.432 |
| 157 | 157 | 0.622 |
| 158 | 158 | 0.273 |
| 159 | 159 | 0.138 |
| 16 | 16 | 0.43 |
| 160 | 160 | 0.0311 |
| 161 | 161 | 0.304 |
| 162 | 162 | 0.457 |
| 163 | 163 | 0.767 |
| 164 | 164 | 0.893 |
| 165 | 165 | 0.153 |
| 166 | 166 | 0.673 |
| 167 | 167 | 0.247 |
| 168 | 168 | 0.144 |
| 169 | 169 | 0.0109 |
| 17 | 17 | 0.329 |
| 18 | 18 | 0.59 |
| 19 | 19 | 0.155 |
| 2 | 2 | 0.703 |
| 20 | 20 | 0.257 |
| 21 | 21 | 0.149 |
| 22 | 22 | 0.315 |
| 23 | 23 | 0.81 |
| 24 | 24 | 0.618 |
| 25 | 25 | 0.209 |
| 26 | 26 | 0.801 |
| 27 | 27 | 0.0158 |
| 28 | 28 | 0.52 |
| 29 | 29 | 0.427 |
| 3 | 3 | 0.0728 |
| 30 | 30 | 0.882 |
| 31 | 31 | 0.459 |
| 32 | 32 | 0.171 |
| 33 | 33 | 0.509 |
| 34 | 34 | 0.393 |
| 35 | 35 | 0.402 |
| 36 | 36 | 0.401 |
| 37 | 37 | 0.272 |
| 38 | 38 | 0.659 |
| 39 | 39 | 0.569 |
| 4 | 4 | 0.207 |
| 40 | 40 | 0.868 |
| 41 | 41 | 0.464 |
| 42 | 42 | 0.314 |
| 43 | 43 | 0.123 |
| 44 | 44 | 0.395 |
| 45 | 45 | 0.871 |
| 46 | 46 | 0.1 |
| 47 | 47 | 0.626 |
| 48 | 48 | 0.133 |
| 49 | 49 | 0.241 |
| 5 | 5 | 0.416 |
| 50 | 50 | 0.913 |
| 51 | 51 | 0.802 |
| 52 | 52 | 0.353 |
| 53 | 53 | 0.185 |
| 54 | 54 | 0.877 |
| 55 | 55 | 0.749 |
| 56 | 56 | 0.973 |
| 57 | 57 | 0.296 |
| 58 | 58 | 0.0161 |
| 59 | 59 | 0.0507 |
| 6 | 6 | 0.317 |
| 60 | 60 | 0.0191 |
| 61 | 61 | 0.78 |
| 62 | 62 | 0.0189 |
| 63 | 63 | 0.182 |
| 64 | 64 | 0.204 |
| 65 | 65 | 0.472 |
| 66 | 66 | 0.011 |
| 67 | 67 | 0.421 |
| 68 | 68 | 0.469 |
| 69 | 69 | 0.442 |
| 7 | 7 | 0.339 |
| 70 | 70 | 0.382 |
| 71 | 71 | 0.617 |
| 72 | 72 | 0.491 |
| 73 | 73 | 0.0845 |
| 74 | 74 | 0.897 |
| 75 | 75 | 0.245 |
| 76 | 76 | 0.786 |
| 77 | 77 | 0.201 |
| 78 | 78 | 0.134 |
| 79 | 79 | 0.185 |
| 8 | 8 | 0.152 |
| 80 | 80 | 0.472 |
| 81 | 81 | 0.257 |
| 82 | 82 | 0.00413 |
| 83 | 83 | 0.21 |
| 84 | 84 | 0.567 |
| 85 | 85 | 0.018 |
| 86 | 86 | 0.465 |
| 87 | 87 | 0.634 |
| 88 | 88 | 0.571 |
| 89 | 89 | 0.0402 |
| 9 | 9 | 0.303 |
| 90 | 90 | 0.351 |
| 91 | 91 | 0.555 |
| 92 | 92 | 0.067 |
| 93 | 93 | 0.507 |
| 94 | 94 | 0.576 |
| 95 | 95 | 0.471 |
| 96 | 96 | 0.419 |
| 97 | 97 | 0.205 |
| 98 | 98 | 0.864 |
| 99 | 99 | 0.994 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11750
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0002224 lens epithelial cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103071 HLEC-SRA 01/04 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000306 (crystallin accumulating cell)
0002222 (vertebrate lens cell)
0002224 (lens epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0010077 (cuboidal epithelium)
0005389 (transparent eye structure)
0000020 (sense organ)
0010371 (ecto-epithelium)
0007625 (pigment epithelium of eye)
0000484 (simple cuboidal epithelium)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000965 (lens of camera-type eye)
0001803 (epithelium of lens)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101120 (epithelial cell line sample)
0101874 (lens epithelial cell line sample)
0103071 (HLEC-SRA 01/04 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
