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|DRA_sample_Accession=CAGE@SAMD00006011
|DRA_sample_Accession=CAGE@SAMD00006011
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00006011
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00006011
|accession_numbers=CAGE;DRX007794;DRR008666;DRZ000091;DRZ001476
|accession_numbers=CAGE;DRX007794;DRR008666;DRZ000091;DRZ001476;DRZ011441;DRZ012826
|accession_numbers_RNASeq=RNA-Seq;DRX057144;DRR062903;DRZ007979
|accession_numbers_RNASeq=RNA-Seq;DRX057144;DRR062903;DRZ007979
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
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|profile_rnaseq=
|profile_rnaseq=
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|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 103: Line 103:
|top_motifs=NANOG:1.68689143108;PDX1:1.57610119739;RXR{A,B,G}:1.55006332931;NKX2-3_NKX2-5:1.51785131903;GFI1:1.35881404194;FOXQ1:1.35750297378;ONECUT1,2:1.32885654771;NFY{A,B,C}:1.24727963675;HOX{A5,B5}:1.22150485541;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.19283821072;E2F1..5:1.13198352181;ZNF143:1.12665483041;bHLH_family:1.12590756637;YY1:1.11922481074;TFDP1:1.06714958454;ZBTB6:1.06299151565;PAX8:1.04268559777;VSX1,2:1.03445068227;HOX{A6,A7,B6,B7}:1.03037925519;TP53:1.02273490056;STAT5{A,B}:1.00737151775;RFX1:0.998784246605;HOXA9_MEIS1:0.976602401435;NRF1:0.901523772413;GTF2A1,2:0.890438690836;CDX1,2,4:0.854020677272;LHX3,4:0.78862375163;TOPORS:0.778149770511;CRX:0.770337558885;ARID5B:0.764992884659;POU2F1..3:0.750898258961;MYB:0.744099973164;OCT4_SOX2{dimer}:0.733325945045;PATZ1:0.723723916465;SOX{8,9,10}:0.69636757596;GCM1,2:0.684981016789;POU3F1..4:0.671702890133;RFX2..5_RFXANK_RFXAP:0.652561464021;NR3C1:0.562068352016;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.559522701327;TEF:0.525264936135;ZNF384:0.482472334425;KLF4:0.471534116783;PAX3,7:0.420960953278;HMGA1,2:0.413064959541;ELK1,4_GABP{A,B1}:0.408298300778;XCPE1{core}:0.341804403709;HIC1:0.328985058363;SREBF1,2:0.325742409978;RREB1:0.320721344752;POU1F1:0.309223474154;EN1,2:0.308598191048;PITX1..3:0.300351588149;BREu{core}:0.300053635797;HNF4A_NR2F1,2:0.281432101162;FOXM1:0.267223922841;PPARG:0.264063645249;FOX{I1,J2}:0.259291050537;TLX1..3_NFIC{dimer}:0.24287699882;NR5A1,2:0.230730851151;ESRRA:0.224417673604;MZF1:0.221287525223;EBF1:0.183852531042;PAX4:0.177549297598;CDC5L:0.175358106533;PRRX1,2:0.156361911307;EGR1..3:0.155921035649;RBPJ:0.142378481165;CUX2:0.124581880078;FOXA2:0.115828383573;ADNP_IRX_SIX_ZHX:0.114120542929;MYOD1:0.0995015733565;UFEwm:0.0809404923845;FOXL1:0.078935501033;SP1:0.0695594442441;TFAP2{A,C}:0.0591956905451;IKZF2:0.0478953861881;SNAI1..3:0.0422949301261;REST:0.0148368405272;ZIC1..3:0.00794042160399;TEAD1:0.00633984872365;PBX1:-0.00236565556201;NKX3-2:-0.0260634240445;NR6A1:-0.0268637437201;FOXP1:-0.0613311025843;ATF2:-0.0681245543428;HNF1A:-0.0692740351506;ALX1:-0.0832061764953;TFAP2B:-0.0927263873246;MEF2{A,B,C,D}:-0.0938867637492;POU6F1:-0.105066434201;HOX{A4,D4}:-0.106120973794;EVI1:-0.109573865322;AIRE:-0.11450220681;RXRA_VDR{dimer}:-0.129622188373;TAL1_TCF{3,4,12}:-0.138706192744;PAX5:-0.139743386651;GTF2I:-0.149169614019;CREB1:-0.152987156948;ATF4:-0.161651578215;SOX17:-0.169860077029;SRF:-0.175371232666;RORA:-0.185572783336;NKX2-1,4:-0.205852853385;ZBTB16:-0.214390707183;ESR1:-0.227094042383;ZEB1:-0.228593788614;GFI1B:-0.229603285426;NKX6-1,2:-0.232711992781;GATA6:-0.233785979872;NKX2-2,8:-0.23517666146;ZNF238:-0.269203838563;GATA4:-0.269573816388;JUN:-0.271214814702;DMAP1_NCOR{1,2}_SMARC:-0.275650791863;BACH2:-0.293395012375;MED-1{core}:-0.299011699931;LEF1_TCF7_TCF7L1,2:-0.30719141258;ZNF148:-0.322646362505;FOXD3:-0.347288391046;SPIB:-0.35889345264;ZFP161:-0.367347192197;TFCP2:-0.384253609931;NFKB1_REL_RELA:-0.388097379361;BPTF:-0.38967742353;MAZ:-0.392115440791;NANOG{mouse}:-0.399140078245;LMO2:-0.41421022949;PAX1,9:-0.416948081507;MTE{core}:-0.419760075259;FOX{F1,F2,J1}:-0.43139261956;FOXP3:-0.432874602286;FOS_FOS{B,L1}_JUN{B,D}:-0.43585301027;NKX3-1:-0.442801265815;TLX2:-0.44406528484;HES1:-0.45542991162;NFE2L2:-0.48052459321;NFE2:-0.488654411217;TGIF1:-0.49144564489;FOXN1:-0.525656333851;HAND1,2:-0.541520409888;TFAP4:-0.551691200438;MYBL2:-0.553739476117;FOX{D1,D2}:-0.58874508175;HIF1A:-0.594382250173;CEBPA,B_DDIT3:-0.59769497772;NR1H4:-0.60659991409;ATF6:-0.610662461156;PAX2:-0.624917770824;HBP1_HMGB_SSRP1_UBTF:-0.62957877056;NHLH1,2:-0.629811164469;DBP:-0.639779152201;FOSL2:-0.645579186856;RUNX1..3:-0.683567586281;MTF1:-0.684790237466;POU5F1:-0.707129921129;ELF1,2,4:-0.735371277541;NFE2L1:-0.741925905298;HLF:-0.746086225999;NFIX:-0.751639706913;IKZF1:-0.755194557044;ATF5_CREB3:-0.759808301296;SPI1:-0.763907394433;NFIL3:-0.793545475829;PRDM1:-0.846054536381;ETS1,2:-0.850502432032;TBP:-0.881739685045;AR:-0.892471037875;MYFfamily:-0.893592279938;ZNF423:-0.927160970528;SMAD1..7,9:-0.937033528624;GZF1:-0.950047969677;FOXO1,3,4:-0.958215650787;HSF1,2:-0.975452598637;AHR_ARNT_ARNT2:-1.0024036756;SPZ1:-1.04230184389;SOX5:-1.05484987535;T:-1.06768713843;STAT1,3:-1.07578412013;SOX2:-1.08542627573;NFATC1..3:-1.12406599078;ALX4:-1.12525760827;TBX4,5:-1.14922225335;IRF7:-1.19011399185;STAT2,4,6:-1.21625517321;MAFB:-1.24815162869;IRF1,2:-1.27478546732;XBP1:-1.34668963979;EP300:-1.36072934341;HMX1:-1.71348431712;GLI1..3:-1.75843586872;PAX6:-1.97350649981
|top_motifs=NANOG:1.68689143108;PDX1:1.57610119739;RXR{A,B,G}:1.55006332931;NKX2-3_NKX2-5:1.51785131903;GFI1:1.35881404194;FOXQ1:1.35750297378;ONECUT1,2:1.32885654771;NFY{A,B,C}:1.24727963675;HOX{A5,B5}:1.22150485541;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.19283821072;E2F1..5:1.13198352181;ZNF143:1.12665483041;bHLH_family:1.12590756637;YY1:1.11922481074;TFDP1:1.06714958454;ZBTB6:1.06299151565;PAX8:1.04268559777;VSX1,2:1.03445068227;HOX{A6,A7,B6,B7}:1.03037925519;TP53:1.02273490056;STAT5{A,B}:1.00737151775;RFX1:0.998784246605;HOXA9_MEIS1:0.976602401435;NRF1:0.901523772413;GTF2A1,2:0.890438690836;CDX1,2,4:0.854020677272;LHX3,4:0.78862375163;TOPORS:0.778149770511;CRX:0.770337558885;ARID5B:0.764992884659;POU2F1..3:0.750898258961;MYB:0.744099973164;OCT4_SOX2{dimer}:0.733325945045;PATZ1:0.723723916465;SOX{8,9,10}:0.69636757596;GCM1,2:0.684981016789;POU3F1..4:0.671702890133;RFX2..5_RFXANK_RFXAP:0.652561464021;NR3C1:0.562068352016;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.559522701327;TEF:0.525264936135;ZNF384:0.482472334425;KLF4:0.471534116783;PAX3,7:0.420960953278;HMGA1,2:0.413064959541;ELK1,4_GABP{A,B1}:0.408298300778;XCPE1{core}:0.341804403709;HIC1:0.328985058363;SREBF1,2:0.325742409978;RREB1:0.320721344752;POU1F1:0.309223474154;EN1,2:0.308598191048;PITX1..3:0.300351588149;BREu{core}:0.300053635797;HNF4A_NR2F1,2:0.281432101162;FOXM1:0.267223922841;PPARG:0.264063645249;FOX{I1,J2}:0.259291050537;TLX1..3_NFIC{dimer}:0.24287699882;NR5A1,2:0.230730851151;ESRRA:0.224417673604;MZF1:0.221287525223;EBF1:0.183852531042;PAX4:0.177549297598;CDC5L:0.175358106533;PRRX1,2:0.156361911307;EGR1..3:0.155921035649;RBPJ:0.142378481165;CUX2:0.124581880078;FOXA2:0.115828383573;ADNP_IRX_SIX_ZHX:0.114120542929;MYOD1:0.0995015733565;UFEwm:0.0809404923845;FOXL1:0.078935501033;SP1:0.0695594442441;TFAP2{A,C}:0.0591956905451;IKZF2:0.0478953861881;SNAI1..3:0.0422949301261;REST:0.0148368405272;ZIC1..3:0.00794042160399;TEAD1:0.00633984872365;PBX1:-0.00236565556201;NKX3-2:-0.0260634240445;NR6A1:-0.0268637437201;FOXP1:-0.0613311025843;ATF2:-0.0681245543428;HNF1A:-0.0692740351506;ALX1:-0.0832061764953;TFAP2B:-0.0927263873246;MEF2{A,B,C,D}:-0.0938867637492;POU6F1:-0.105066434201;HOX{A4,D4}:-0.106120973794;EVI1:-0.109573865322;AIRE:-0.11450220681;RXRA_VDR{dimer}:-0.129622188373;TAL1_TCF{3,4,12}:-0.138706192744;PAX5:-0.139743386651;GTF2I:-0.149169614019;CREB1:-0.152987156948;ATF4:-0.161651578215;SOX17:-0.169860077029;SRF:-0.175371232666;RORA:-0.185572783336;NKX2-1,4:-0.205852853385;ZBTB16:-0.214390707183;ESR1:-0.227094042383;ZEB1:-0.228593788614;GFI1B:-0.229603285426;NKX6-1,2:-0.232711992781;GATA6:-0.233785979872;NKX2-2,8:-0.23517666146;ZNF238:-0.269203838563;GATA4:-0.269573816388;JUN:-0.271214814702;DMAP1_NCOR{1,2}_SMARC:-0.275650791863;BACH2:-0.293395012375;MED-1{core}:-0.299011699931;LEF1_TCF7_TCF7L1,2:-0.30719141258;ZNF148:-0.322646362505;FOXD3:-0.347288391046;SPIB:-0.35889345264;ZFP161:-0.367347192197;TFCP2:-0.384253609931;NFKB1_REL_RELA:-0.388097379361;BPTF:-0.38967742353;MAZ:-0.392115440791;NANOG{mouse}:-0.399140078245;LMO2:-0.41421022949;PAX1,9:-0.416948081507;MTE{core}:-0.419760075259;FOX{F1,F2,J1}:-0.43139261956;FOXP3:-0.432874602286;FOS_FOS{B,L1}_JUN{B,D}:-0.43585301027;NKX3-1:-0.442801265815;TLX2:-0.44406528484;HES1:-0.45542991162;NFE2L2:-0.48052459321;NFE2:-0.488654411217;TGIF1:-0.49144564489;FOXN1:-0.525656333851;HAND1,2:-0.541520409888;TFAP4:-0.551691200438;MYBL2:-0.553739476117;FOX{D1,D2}:-0.58874508175;HIF1A:-0.594382250173;CEBPA,B_DDIT3:-0.59769497772;NR1H4:-0.60659991409;ATF6:-0.610662461156;PAX2:-0.624917770824;HBP1_HMGB_SSRP1_UBTF:-0.62957877056;NHLH1,2:-0.629811164469;DBP:-0.639779152201;FOSL2:-0.645579186856;RUNX1..3:-0.683567586281;MTF1:-0.684790237466;POU5F1:-0.707129921129;ELF1,2,4:-0.735371277541;NFE2L1:-0.741925905298;HLF:-0.746086225999;NFIX:-0.751639706913;IKZF1:-0.755194557044;ATF5_CREB3:-0.759808301296;SPI1:-0.763907394433;NFIL3:-0.793545475829;PRDM1:-0.846054536381;ETS1,2:-0.850502432032;TBP:-0.881739685045;AR:-0.892471037875;MYFfamily:-0.893592279938;ZNF423:-0.927160970528;SMAD1..7,9:-0.937033528624;GZF1:-0.950047969677;FOXO1,3,4:-0.958215650787;HSF1,2:-0.975452598637;AHR_ARNT_ARNT2:-1.0024036756;SPZ1:-1.04230184389;SOX5:-1.05484987535;T:-1.06768713843;STAT1,3:-1.07578412013;SOX2:-1.08542627573;NFATC1..3:-1.12406599078;ALX4:-1.12525760827;TBX4,5:-1.14922225335;IRF7:-1.19011399185;STAT2,4,6:-1.21625517321;MAFB:-1.24815162869;IRF1,2:-1.27478546732;XBP1:-1.34668963979;EP300:-1.36072934341;HMX1:-1.71348431712;GLI1..3:-1.75843586872;PAX6:-1.97350649981
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10809-111A8;search_select_hide=table117:FF:10809-111A8
}}
}}

Latest revision as of 15:06, 3 June 2020

Name:Wilms' tumor cell line:G-401
Species:Human (Homo sapiens)
Library ID:CNhs11892
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexmale
age3 months
cell typeunclassifiable
cell lineG-401
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00006011
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11892 CAGE DRX007794 DRR008666
Accession ID Hg19

Library idBAMCTSS
CNhs11892 DRZ000091 DRZ001476
Accession ID Hg38

Library idBAMCTSS
CNhs11892 DRZ011441 DRZ012826
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00006011
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10087 RNA-Seq DRX057144 DRR062903
Accession ID Hg19

Library idBAMCTSS
RDhi10087 DRZ007979


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.215
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.514
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0.909
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.00496
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.107
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0897
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0111
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.104
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0441
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.431
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0104
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.00257
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.548
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0441
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0841
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0441
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11892

Jaspar motifP-value
MA0002.25.21649e-5
MA0003.10.134
MA0004.10.063
MA0006.10.7
MA0007.10.339
MA0009.10.0434
MA0014.10.659
MA0017.10.777
MA0018.20.239
MA0019.10.676
MA0024.12.52761e-5
MA0025.10.206
MA0027.10.732
MA0028.10.0617
MA0029.10.239
MA0030.10.196
MA0031.10.307
MA0035.20.389
MA0038.10.00579
MA0039.20.262
MA0040.10.0904
MA0041.10.205
MA0042.10.16
MA0043.10.616
MA0046.10.479
MA0047.20.355
MA0048.10.00745
MA0050.16.60702e-14
MA0051.14.07582e-8
MA0052.10.386
MA0055.15.41895e-4
MA0057.10.437
MA0058.10.0719
MA0059.10.222
MA0060.14.38202e-16
MA0061.10.00388
MA0062.20.995
MA0065.20.381
MA0066.10.947
MA0067.10.285
MA0068.10.903
MA0069.10.897
MA0070.10.3
MA0071.10.688
MA0072.10.648
MA0073.10.55
MA0074.10.843
MA0076.10.0806
MA0077.10.996
MA0078.10.322
MA0079.20.447
MA0080.21.29106e-11
MA0081.10.112
MA0083.10.548
MA0084.10.552
MA0087.10.146
MA0088.10.00911
MA0090.10.604
MA0091.10.145
MA0092.10.157
MA0093.10.0448
MA0099.22.1617e-11
MA0100.10.115
MA0101.10.178
MA0102.25.02012e-4
MA0103.10.855
MA0104.20.0515
MA0105.10.00924
MA0106.10.157
MA0107.10.00392
MA0108.20.287
MA0111.10.372
MA0112.20.00312
MA0113.10.00968
MA0114.10.27
MA0115.10.0478
MA0116.10.0203
MA0117.10.622
MA0119.10.202
MA0122.10.614
MA0124.10.028
MA0125.10.108
MA0131.10.603
MA0135.10.924
MA0136.17.2833e-9
MA0137.20.00816
MA0138.20.983
MA0139.10.656
MA0140.10.303
MA0141.10.97
MA0142.10.159
MA0143.10.354
MA0144.12.18879e-4
MA0145.10.281
MA0146.10.358
MA0147.10.0571
MA0148.10.538
MA0149.10.996
MA0150.10.00148
MA0152.10.629
MA0153.10.387
MA0154.10.0289
MA0155.10.234
MA0156.12.40635e-5
MA0157.10.0825
MA0159.10.992
MA0160.10.977
MA0162.10.997
MA0163.10.129
MA0164.10.918
MA0258.10.196
MA0259.10.238



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11892

Novel motifP-value
10.857
100.166
1000.161
1010.929
1020.0723
1030.37
1040.21
1050.646
1060.0081
1070.0947
1080.636
1090.76
110.863
1100.929
1110.43
1120.202
1130.0443
1140.0512
1150.684
1160.8
1170.306
1180.683
1190.0793
120.55
1200.546
1210.355
1220.507
1230.743
1240.301
1250.652
1260.342
1270.82
1280.102
1290.792
130.0542
1300.0419
1310.257
1320.722
1330.316
1340.247
1350.0384
1360.787
1370.954
1380.208
1390.0134
140.641
1400.0511
1410.423
1420.68
1430.167
1440.46
1450.745
1460.194
1470.723
1480.0122
1490.078
150.213
1500.721
1510.0677
1520.54
1530.0748
1540.163
1550.539
1560.316
1570.946
1580.167
1590.531
160.613
1600.277
1610.434
1620.301
1630.297
1640.28
1650.0938
1660.631
1670.686
1680.0389
1690.249
170.624
180.181
190.262
20.2
200.431
210.698
220.433
232.69268e-4
240.86
250.437
260.377
270.0865
280.905
290.968
30.409
300.656
310.774
320.0319
330.536
340.543
350.836
360.549
370.953
380.438
390.503
40.671
400.383
410.1
420.768
430.126
440.717
450.428
460.339
470.567
480.859
490.373
50.0641
500.907
510.735
520.409
530.103
540.585
550.257
560.811
570.816
580.0312
590.15
60.998
600.0554
610.9
620.0225
630.284
640.531
650.103
660.0089
670.637
680.059
690.419
70.969
700.054
710.319
720.26
730.5
740.336
750.298
760.891
770.829
780.703
790.18
80.674
800.00378
810.488
820.159
830.467
840.727
850.0631
860.456
870.0926
880.926
890.303
90.131
900.386
910.067
920.0069
930.122
940.0753
950.0275
960.426
970.339
980.43
990.89



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11892


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
7 (disease of anatomical entity)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100067 (kidney cell line sample)
0103192 (renal cancer cell line sample)
0102586 (G-401 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)

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