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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00005107
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|HumanCAGEScanFiles=NCig10045;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Anulus%2520Pulposus%2520Cell%252c%2520donor1.NCig10045.11248-116E6.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Anulus%2520Pulposus%2520Cell%252c%2520donor1.NCig10045.11248-116E6.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Anulus%2520Pulposus%2520Cell%252c%2520donor1.NCig10045.11248-116E6.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Anulus%2520Pulposus%2520Cell%252c%2520donor1.NCig10045.11248-116E6.hg19.GCTATA.pairs.bed.gz
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002602
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002602
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|microRNAs=
|microRNAs=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11248
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.TTAGGC.11248
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|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;11248
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|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.TTAGGC.11248
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.TTAGGC.11248
|name=Anulus Pulposus Cell, donor1
|name=Anulus Pulposus Cell, donor1
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|profile_rnaseq=
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|sample_category=primary cells
Line 103: Line 106:
|top_motifs=RXR{A,B,G}:2.08726327293;ZNF238:1.89133974462;GZF1:1.61000225261;HES1:1.46669967332;ATF6:1.44060604715;TAL1_TCF{3,4,12}:1.34114991198;ZNF423:1.2680145207;PDX1:1.24916770314;GLI1..3:1.19136591572;NFIX:1.19120118775;EBF1:1.18971454619;TFAP4:1.16321895193;ESR1:1.08234124767;FOXL1:1.0787746566;HOX{A5,B5}:1.06421945743;GFI1B:1.03948750177;NR1H4:1.02432729488;NR6A1:0.919196621437;MYBL2:0.885548515931;NR3C1:0.85782309293;TLX1..3_NFIC{dimer}:0.8555578635;PATZ1:0.854383907348;MAFB:0.837744061635;NFATC1..3:0.815498661661;EN1,2:0.805288043692;YY1:0.768640459648;SOX5:0.763346994221;ALX4:0.741169747036;NANOG{mouse}:0.736955713089;NKX6-1,2:0.719497890968;AIRE:0.714993463918;GTF2A1,2:0.709070602389;KLF4:0.704882135292;DMAP1_NCOR{1,2}_SMARC:0.682466670731;ZBTB6:0.679521880067;ZNF384:0.673280692017;PAX1,9:0.662884975526;MZF1:0.652749334763;TBX4,5:0.621964268957;UFEwm:0.618712106803;ZIC1..3:0.612784591973;TEAD1:0.598018283107;DBP:0.583783277681;PAX5:0.58335218244;GTF2I:0.568811487349;ARID5B:0.562084201562;STAT1,3:0.554546639126;NKX2-2,8:0.552129674273;NKX2-3_NKX2-5:0.541071606147;NHLH1,2:0.53238352031;FOXO1,3,4:0.519985475428;SRF:0.490008435926;SPZ1:0.473040990966;HAND1,2:0.45952079625;LHX3,4:0.438538537103;MYFfamily:0.424036615691;SMAD1..7,9:0.421762570239;TFCP2:0.41471563813;NFE2L2:0.40933998922;FOXD3:0.37655299583;RREB1:0.362246953113;AHR_ARNT_ARNT2:0.361706772584;IKZF1:0.346173361927;FOXQ1:0.339333924606;STAT2,4,6:0.33228887417;MAZ:0.318372587267;BACH2:0.295570486925;SOX17:0.29109940042;NKX3-1:0.273220332664;ESRRA:0.271342951486;HSF1,2:0.266574905709;RBPJ:0.252569034995;PRRX1,2:0.248769467428;ONECUT1,2:0.247820950327;NFE2:0.242746294721;HOX{A6,A7,B6,B7}:0.234397423454;RFX1:0.222746762475;HMGA1,2:0.221800536709;SREBF1,2:0.205977976345;GATA4:0.195597565733;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.190539239997;IKZF2:0.190478515267;MEF2{A,B,C,D}:0.188332075834;HNF1A:0.166560781549;PRDM1:0.164413481033;XBP1:0.145195330732;NR5A1,2:0.140238349496;RFX2..5_RFXANK_RFXAP:0.1383102269;PAX4:0.136546425883;EVI1:0.128830814265;TBP:0.12854120779;HNF4A_NR2F1,2:0.122966132305;FOSL2:0.118845562949;LEF1_TCF7_TCF7L1,2:0.112117979378;HMX1:0.105280925608;FOX{I1,J2}:0.099739294912;MED-1{core}:0.0938258816669;POU6F1:0.0754500028036;FOXP3:0.0681682824637;RUNX1..3:0.0641962989779;TEF:0.0497510111018;GFI1:0.0484876573903;CDC5L:0.0473501899053;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0394059821572;HLF:0.0358172887736;BPTF:0.0278568385169;FOXN1:0.023654322561;PAX8:0.0120490484557;SP1:0.00937899582093;TGIF1:-0.0116255847945;MTF1:-0.0171435950791;HBP1_HMGB_SSRP1_UBTF:-0.020378149135;ATF2:-0.0374241251497;FOS_FOS{B,L1}_JUN{B,D}:-0.038718399913;TFAP2{A,C}:-0.0495058459726;STAT5{A,B}:-0.0502277327705;MTE{core}:-0.0518771701853;AR:-0.0526723526796;HOX{A4,D4}:-0.0769222733402;TP53:-0.0822132920296;HIC1:-0.106964708943;ZNF143:-0.122656037134;FOXA2:-0.123582402402;NKX3-2:-0.163621146854;ZNF148:-0.173852147021;FOX{D1,D2}:-0.175026741451;FOX{F1,F2,J1}:-0.181159876359;T:-0.195998613135;RXRA_VDR{dimer}:-0.220501759967;SOX2:-0.234112985544;EGR1..3:-0.236053996244;CRX:-0.239536688656;ADNP_IRX_SIX_ZHX:-0.24546463976;NKX2-1,4:-0.253617763052;REST:-0.258641951166;CEBPA,B_DDIT3:-0.260961313487;ELK1,4_GABP{A,B1}:-0.268279423463;ATF5_CREB3:-0.272046150152;POU3F1..4:-0.276892120382;NFE2L1:-0.279567329496;NFIL3:-0.281175376749;ATF4:-0.294490870057;JUN:-0.300577210376;CREB1:-0.320234577081;TOPORS:-0.330281823859;HIF1A:-0.353198099621;ZFP161:-0.370287992508;POU5F1:-0.379282746352;MYB:-0.384440644695;CUX2:-0.386059117861;NFKB1_REL_RELA:-0.395924069898;XCPE1{core}:-0.398077373935;RORA:-0.39914513735;CDX1,2,4:-0.423704108901;NRF1:-0.424486591803;LMO2:-0.431028930236;IRF1,2:-0.437588642862;bHLH_family:-0.443182057654;SNAI1..3:-0.450779046069;TFAP2B:-0.458970613917;POU2F1..3:-0.463185698997;PAX2:-0.488943866459;ETS1,2:-0.489282718975;PAX6:-0.501580981682;GCM1,2:-0.521104712445;IRF7:-0.526521375303;PAX3,7:-0.536284065286;FOXM1:-0.567448681237;NFY{A,B,C}:-0.569238685195;GATA6:-0.595492965201;PPARG:-0.605696185259;SPI1:-0.60908722918;SPIB:-0.609315546322;PBX1:-0.638809617409;EP300:-0.643595038488;ELF1,2,4:-0.660936916118;BREu{core}:-0.665318682213;ZEB1:-0.717313052032;NANOG:-0.721068860785;E2F1..5:-0.725451828292;SOX{8,9,10}:-0.732951003388;ZBTB16:-0.751277794935;POU1F1:-0.790026601058;VSX1,2:-0.81291369728;HOXA9_MEIS1:-0.876446875692;FOXP1:-0.888745341927;TFDP1:-0.988181981791;MYOD1:-1.03953556875;TLX2:-1.06085128149;ALX1:-1.10527909219;OCT4_SOX2{dimer}:-1.14957308231;PITX1..3:-1.473825371
|top_motifs=RXR{A,B,G}:2.08726327293;ZNF238:1.89133974462;GZF1:1.61000225261;HES1:1.46669967332;ATF6:1.44060604715;TAL1_TCF{3,4,12}:1.34114991198;ZNF423:1.2680145207;PDX1:1.24916770314;GLI1..3:1.19136591572;NFIX:1.19120118775;EBF1:1.18971454619;TFAP4:1.16321895193;ESR1:1.08234124767;FOXL1:1.0787746566;HOX{A5,B5}:1.06421945743;GFI1B:1.03948750177;NR1H4:1.02432729488;NR6A1:0.919196621437;MYBL2:0.885548515931;NR3C1:0.85782309293;TLX1..3_NFIC{dimer}:0.8555578635;PATZ1:0.854383907348;MAFB:0.837744061635;NFATC1..3:0.815498661661;EN1,2:0.805288043692;YY1:0.768640459648;SOX5:0.763346994221;ALX4:0.741169747036;NANOG{mouse}:0.736955713089;NKX6-1,2:0.719497890968;AIRE:0.714993463918;GTF2A1,2:0.709070602389;KLF4:0.704882135292;DMAP1_NCOR{1,2}_SMARC:0.682466670731;ZBTB6:0.679521880067;ZNF384:0.673280692017;PAX1,9:0.662884975526;MZF1:0.652749334763;TBX4,5:0.621964268957;UFEwm:0.618712106803;ZIC1..3:0.612784591973;TEAD1:0.598018283107;DBP:0.583783277681;PAX5:0.58335218244;GTF2I:0.568811487349;ARID5B:0.562084201562;STAT1,3:0.554546639126;NKX2-2,8:0.552129674273;NKX2-3_NKX2-5:0.541071606147;NHLH1,2:0.53238352031;FOXO1,3,4:0.519985475428;SRF:0.490008435926;SPZ1:0.473040990966;HAND1,2:0.45952079625;LHX3,4:0.438538537103;MYFfamily:0.424036615691;SMAD1..7,9:0.421762570239;TFCP2:0.41471563813;NFE2L2:0.40933998922;FOXD3:0.37655299583;RREB1:0.362246953113;AHR_ARNT_ARNT2:0.361706772584;IKZF1:0.346173361927;FOXQ1:0.339333924606;STAT2,4,6:0.33228887417;MAZ:0.318372587267;BACH2:0.295570486925;SOX17:0.29109940042;NKX3-1:0.273220332664;ESRRA:0.271342951486;HSF1,2:0.266574905709;RBPJ:0.252569034995;PRRX1,2:0.248769467428;ONECUT1,2:0.247820950327;NFE2:0.242746294721;HOX{A6,A7,B6,B7}:0.234397423454;RFX1:0.222746762475;HMGA1,2:0.221800536709;SREBF1,2:0.205977976345;GATA4:0.195597565733;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.190539239997;IKZF2:0.190478515267;MEF2{A,B,C,D}:0.188332075834;HNF1A:0.166560781549;PRDM1:0.164413481033;XBP1:0.145195330732;NR5A1,2:0.140238349496;RFX2..5_RFXANK_RFXAP:0.1383102269;PAX4:0.136546425883;EVI1:0.128830814265;TBP:0.12854120779;HNF4A_NR2F1,2:0.122966132305;FOSL2:0.118845562949;LEF1_TCF7_TCF7L1,2:0.112117979378;HMX1:0.105280925608;FOX{I1,J2}:0.099739294912;MED-1{core}:0.0938258816669;POU6F1:0.0754500028036;FOXP3:0.0681682824637;RUNX1..3:0.0641962989779;TEF:0.0497510111018;GFI1:0.0484876573903;CDC5L:0.0473501899053;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0394059821572;HLF:0.0358172887736;BPTF:0.0278568385169;FOXN1:0.023654322561;PAX8:0.0120490484557;SP1:0.00937899582093;TGIF1:-0.0116255847945;MTF1:-0.0171435950791;HBP1_HMGB_SSRP1_UBTF:-0.020378149135;ATF2:-0.0374241251497;FOS_FOS{B,L1}_JUN{B,D}:-0.038718399913;TFAP2{A,C}:-0.0495058459726;STAT5{A,B}:-0.0502277327705;MTE{core}:-0.0518771701853;AR:-0.0526723526796;HOX{A4,D4}:-0.0769222733402;TP53:-0.0822132920296;HIC1:-0.106964708943;ZNF143:-0.122656037134;FOXA2:-0.123582402402;NKX3-2:-0.163621146854;ZNF148:-0.173852147021;FOX{D1,D2}:-0.175026741451;FOX{F1,F2,J1}:-0.181159876359;T:-0.195998613135;RXRA_VDR{dimer}:-0.220501759967;SOX2:-0.234112985544;EGR1..3:-0.236053996244;CRX:-0.239536688656;ADNP_IRX_SIX_ZHX:-0.24546463976;NKX2-1,4:-0.253617763052;REST:-0.258641951166;CEBPA,B_DDIT3:-0.260961313487;ELK1,4_GABP{A,B1}:-0.268279423463;ATF5_CREB3:-0.272046150152;POU3F1..4:-0.276892120382;NFE2L1:-0.279567329496;NFIL3:-0.281175376749;ATF4:-0.294490870057;JUN:-0.300577210376;CREB1:-0.320234577081;TOPORS:-0.330281823859;HIF1A:-0.353198099621;ZFP161:-0.370287992508;POU5F1:-0.379282746352;MYB:-0.384440644695;CUX2:-0.386059117861;NFKB1_REL_RELA:-0.395924069898;XCPE1{core}:-0.398077373935;RORA:-0.39914513735;CDX1,2,4:-0.423704108901;NRF1:-0.424486591803;LMO2:-0.431028930236;IRF1,2:-0.437588642862;bHLH_family:-0.443182057654;SNAI1..3:-0.450779046069;TFAP2B:-0.458970613917;POU2F1..3:-0.463185698997;PAX2:-0.488943866459;ETS1,2:-0.489282718975;PAX6:-0.501580981682;GCM1,2:-0.521104712445;IRF7:-0.526521375303;PAX3,7:-0.536284065286;FOXM1:-0.567448681237;NFY{A,B,C}:-0.569238685195;GATA6:-0.595492965201;PPARG:-0.605696185259;SPI1:-0.60908722918;SPIB:-0.609315546322;PBX1:-0.638809617409;EP300:-0.643595038488;ELF1,2,4:-0.660936916118;BREu{core}:-0.665318682213;ZEB1:-0.717313052032;NANOG:-0.721068860785;E2F1..5:-0.725451828292;SOX{8,9,10}:-0.732951003388;ZBTB16:-0.751277794935;POU1F1:-0.790026601058;VSX1,2:-0.81291369728;HOXA9_MEIS1:-0.876446875692;FOXP1:-0.888745341927;TFDP1:-0.988181981791;MYOD1:-1.03953556875;TLX2:-1.06085128149;ALX1:-1.10527909219;OCT4_SOX2{dimer}:-1.14957308231;PITX1..3:-1.473825371
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11248-116E6;search_select_hide=table117:FF:11248-116E6
}}
}}

Latest revision as of 16:27, 3 June 2020

Name:Anulus Pulposus Cell, donor1
Species:Human (Homo sapiens)
Library ID:CNhs10876
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuespinal cord
dev stageNA
sexunknown
ageNA
cell typeanulus fibrosus cell of intervertebral disc
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:5026
catalog numberSC4815
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005107
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10876 CAGE DRX008110 DRR008982
Accession ID Hg19

Library idBAMCTSS
CNhs10876 DRZ000407 DRZ001792
Accession ID Hg38

Library idBAMCTSS
CNhs10876 DRZ011757 DRZ013142
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10045downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005107
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10004.TTAGGC sRNA-Seq DRX037033 DRR041399
Accession ID Hg19

Library idBAMCTSS
SRhi10004.TTAGGC DRZ007041


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.16
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.234
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0936
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0961
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.14
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.486
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.209
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.48
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0692
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0195
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.0507
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.326
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.209
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0507
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0507
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.057
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0082
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.368
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0507
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0507
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.241
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.35
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0998
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0507
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.27
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.428
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10876

Jaspar motifP-value
MA0002.20.374
MA0003.10.319
MA0004.10.209
MA0006.10.258
MA0007.10.416
MA0009.10.645
MA0014.10.993
MA0017.10.505
MA0018.20.00138
MA0019.10.673
MA0024.13.09632e-6
MA0025.10.00586
MA0027.10.418
MA0028.10.103
MA0029.10.47
MA0030.10.697
MA0031.10.771
MA0035.20.038
MA0038.10.531
MA0039.20.387
MA0040.10.438
MA0041.10.341
MA0042.10.323
MA0043.10.0282
MA0046.10.614
MA0047.20.2
MA0048.10.985
MA0050.11.31254e-5
MA0051.10.0268
MA0052.10.783
MA0055.10.342
MA0057.10.978
MA0058.10.308
MA0059.10.209
MA0060.12.78188e-5
MA0061.10.906
MA0062.21.95684e-7
MA0065.20.247
MA0066.10.138
MA0067.10.0664
MA0068.10.183
MA0069.10.45
MA0070.10.973
MA0071.10.946
MA0072.10.633
MA0073.10.89
MA0074.10.126
MA0076.10.0123
MA0077.10.171
MA0078.10.749
MA0079.20.444
MA0080.21.74175e-8
MA0081.10.0148
MA0083.10.00218
MA0084.10.175
MA0087.10.283
MA0088.10.191
MA0090.10.0137
MA0091.10.00102
MA0092.10.276
MA0093.10.161
MA0099.20.00666
MA0100.10.556
MA0101.10.0104
MA0102.20.514
MA0103.10.0129
MA0104.20.151
MA0105.10.0737
MA0106.10.466
MA0107.10.00869
MA0108.20.76
MA0111.10.663
MA0112.20.00519
MA0113.10.049
MA0114.10.463
MA0115.10.153
MA0116.10.035
MA0117.10.634
MA0119.10.058
MA0122.10.994
MA0124.10.0401
MA0125.10.501
MA0131.10.308
MA0135.10.24
MA0136.18.63395e-11
MA0137.20.0389
MA0138.20.348
MA0139.10.222
MA0140.10.0271
MA0141.10.288
MA0142.10.383
MA0143.10.412
MA0144.10.0889
MA0145.10.277
MA0146.10.279
MA0147.10.101
MA0148.10.0336
MA0149.10.171
MA0150.10.957
MA0152.10.0285
MA0153.10.364
MA0154.10.0457
MA0155.10.197
MA0156.12.72231e-10
MA0157.10.479
MA0159.10.742
MA0160.10.252
MA0162.10.114
MA0163.10.00622
MA0164.10.919
MA0258.10.463
MA0259.10.152



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10876

Novel motifP-value
10.676
100.724
1000.691
1010.761
1020.166
1030.0613
1040.421
1050.429
1060.252
1070.0157
1080.784
1090.801
110.228
1100.405
1110.425
1120.685
1130.451
1140.471
1150.547
1160.124
1170.704
1180.798
1190.94
120.253
1200.434
1210.34
1220.246
1235.99451e-5
1240.611
1250.14
1260.512
1270.225
1280.0185
1290.874
130.617
1300.114
1310.534
1320.0942
1330.838
1340.315
1350.966
1360.678
1370.208
1380.518
1390.801
140.619
1400.17
1410.104
1420.579
1430.937
1440.26
1450.279
1460.184
1470.317
1480.661
1490.0609
150.701
1500.445
1510.612
1520.28
1530.748
1540.266
1550.111
1560.1
1570.728
1580.0103
1590.228
160.0621
1600.122
1610.877
1620.111
1630.932
1640.431
1650.847
1660.266
1670.159
1680.558
1690.0701
170.275
180.229
190.0226
20.167
200.654
210.352
220.0497
230.182
240.193
250.661
260.837
270.106
280.233
290.129
30.316
300.0777
310.333
323.35883e-8
330.219
340.497
350.678
360.224
370.0361
380.745
390.192
40.0055
400.383
410.0417
420.811
430.374
440.675
450.203
460.171
470.767
480.865
490.84
50.465
500.383
510.281
520.487
530.126
540.373
550.273
560.513
570.788
580.572
590.022
60.704
600.732
610.733
620.652
630.42
640.966
650.245
660.56
670.638
680.458
690.295
70.741
700.71
710.418
720.129
730.124
740.64
750.556
760.741
770.104
780.764
790.108
80.143
800.714
810.644
820.286
830.591
840.56
850.366
860.476
870.825
880.186
890.0588
90.0945
900.697
910.597
920.454
930.601
940.356
950.679
960.222
970.439
980.45
998.55568e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10876


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002602 (annulus pulposus cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0002418 (cartilage tissue)
0000479 (tissue)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004905 (articulation)
0011135 (intervertebral cartilage)
0000075 (subdivision of skeletal system)
0002216 (symphysis)
0004765 (skeletal element)
0011134 (nonsynovial joint)
0002209 (fibrous joint)
0002213 (cartilaginous joint)
0000982 (skeletal joint)
0004755 (skeletal tissue)
0006444 (annulus fibrosus)
0001995 (fibrocartilage)
0007844 (cartilage element)
0004715 (annulus fibrosus disci intervertebralis)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)
0011138 (post-cranial axial skeletal system)
0001130 (vertebral column)
0001066 (intervertebral disk)
0001468 (intervertebral joint)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000192 (human anulus pulposus cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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