FF:11324-117E1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004959 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004959 | ||
|accession_numbers=CAGE;DRX008232;DRR009104;DRZ000529;DRZ001914;DRZ011879;DRZ013264 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037098;DRR041464;DRZ007106 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0010260,UBERON:0003920,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002543,CL:0002618 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000001,FF:0000052,FF:0000247 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.37!302.89!SOX18;;chr8:10588010..10588030,-!p1@SOX7!2.02!103.73!SOX7;;chr21:39870339..39870443,-!p1@ERG!2.00!99.24!ERG;;chr12:96588368..96588394,+!p3@ELK3!1.90!202.75!ELK3;;chr18:53068911..53068935,-!p4@TCF4!1.86!79.93!TCF4;;chr3:169381420..169381535,-!p1@MECOM!1.76!66.01!MECOM;;chr10:94449703..94449718,+!p1@HHEX!1.50!113.84!HHEX;;chr17:6926362..6926377,+!p1@BCL6B!1.50!30.54!BCL6B;;chr6:34204921..34204939,+!p3@HMGA1!1.47!825.59!HMGA1;;chr7:27205106..27205134,-!p2@HOXA9!1.45!27.39!HOXA9;;chr8:55370487..55370503,+!p1@SOX17!1.45!27.39!SOX17;;chr19:46801639..46801699,+!p1@HIF3A!1.39!23.80!HIF3A;;chr7:27205136..27205164,-!p1@HOXA9!1.36!22.00!HOXA9;;chr18:22932080..22932170,-!p1@ZNF521!1.35!88.69!ZNF521;;chr17:46682321..46682362,-!p1@HOXB6!1.34!20.88!HOXB6;;chr9:14314131..14314147,-!p2@NFIB!1.27!96.77!NFIB;;chr8:106330656..106330684,+!p1@ZFPM2!1.27!45.13!ZFPM2;;chr7:27192185..27192209,-!p1@HOXA3!1.27!17.74!HOXA3;;chr7:15726243..15726293,-!p2@MEOX2!1.25!16.84!MEOX2;;chr13:72441315..72441454,-!p1@DACH1!1.20!29.86!DACH1;;chr5:71803177..71803255,-!p1@ZNF366!1.20!14.82!ZNF366;;chr15:96873984..96873999,+!p3@NR2F2!1.15!95.20!NR2F2;;chr17:46655672..46655697,-!p3@HOXB4!1.15!13.25!HOXB4;;chr12:66218183..66218209,+!p4@HMGA2!1.12!23.58!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.12!17.96!HMGA2;;chr19:13213511..13213545,-!p2@LYL1!1.11!12.80!LYL1;;chr20:50159198..50159299,-!p1@NFATC2!1.10!16.84!NFATC2;;chr3:128206762..128206781,-!p2@GATA2!1.07!67.58!GATA2;;chr12:66218255..66218304,+!p3@HMGA2!1.07!29.19!HMGA2;;chr10:94449675..94449694,+!p2@HHEX!1.05!27.62!HHEX;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.33!KDM5D;;chr9:16705069..16705086,-!p3@BNC2!1.05!10.33!BNC2;;chr6:28321971..28321995,-!p1@ZNF323!1.05!10.33!ZNF323;;chr13:72441074..72441172,-!p2@DACH1!1.05!10.10!DACH1;;chr18:53068982..53068993,-!p20@TCF4!1.05!10.10!TCF4;;chr19:53496768..53496799,-!p1@ZNF702P!1.01!14.37!ZNF702P;;chr19:13213399..13213414,-!p6@LYL1!1.01!9.21!LYL1;;chr2:176994408..176994492,+!p1@HOXD8!1.01!9.21!HOXD8;;chr1:200008734..200008765,+!p2@NR5A2!1.00!8.98!NR5A2;;chr10:8096631..8096660,+!p1@GATA3!0.99!10.55!GATA3;;chr7:15726296..15726315,-!p1@MEOX2!0.99!8.76!MEOX2;;chr6:34204672..34204692,+!p1@HMGA1!0.97!954.03!HMGA1;;chr11:128563948..128564003,+!p1@FLI1!0.97!103.73!FLI1;;chr16:86600426..86600441,+!p1@FOXC2!0.96!20.66!FOXC2;;chr1:47695003..47695042,-!p2@TAL1!0.95!7.86!TAL1;;chr2:46524537..46524553,+!p1@EPAS1!0.93!763.85!EPAS1;;chr12:66218598..66218645,+!p2@HMGA2!0.93!35.92!HMGA2;;chr9:14314106..14314119,-!p5@NFIB!0.93!13.92!NFIB;;chr5:88178983..88179012,-!p1@MEF2C!0.92!58.38!MEF2C;;chr17:46688334..46688385,-!p1@HOXB7!0.92!10.78!HOXB7;;chr7:115670804..115670825,-!p1@TFEC!0.92!7.41!TFEC;;chr2:177001290..177001315,+!p1@HOXD3!0.90!6.96!HOXD3;;chr1:214161272..214161322,+!p1@PROX1!0.89!9.65!PROX1;;chr19:46800289..46800327,+!p2@HIF3A!0.89!6.74!HIF3A;;chr15:96873921..96873946,+!p1@NR2F2!0.88!197.81!NR2F2;;chr9:14314566..14314618,-!p1@NFIB!0.88!83.30!NFIB;;chr17:46655704..46655718,-!p2@HOXB4!0.87!9.88!HOXB4;;chr15:96874012..96874042,+!p2@NR2F2!0.86!60.17!NR2F2;;chr8:93115584..93115642,-!p5@RUNX1T1!0.85!6.06!RUNX1T1;;chr1:47697539..47697573,-!p3@TAL1!0.85!6.06!TAL1;;chr20:50721803..50721857,-!p2@ZFP64!0.84!9.65!ZFP64;;chr15:90544532..90544563,+!p1@ZNF710!0.83!12.12!ZNF710;;chr17:46687959..46688007,-!p2@HOXB7!0.83!8.08!HOXB7;;chr18:22932004..22932021,-!p2@ZNF521!0.83!5.84!ZNF521;;chr2:177053386..177053402,+!p1@HOXD1!0.83!5.84!HOXD1;;chr10:31288370..31288393,-!p3@ZNF438!0.83!5.84!ZNF438;;chr3:168865194..168865245,-!p3@MECOM!0.82!7.41!MECOM;;chr22:19748231..19748317,+!p1@TBX1!0.82!5.61!TBX1;;chr9:124991204..124991246,-!p1@LHX6!0.81!5.39!LHX6;;chr12:66218836..66218888,+!p1@HMGA2!0.79!52.54!HMGA2;;chr12:2986206..2986258,-!p2@FOXM1!0.79!33.68!FOXM1;;chr1:205601064..205601087,-!p4@ELK4!0.79!10.55!ELK4;;chr5:88179195..88179224,-!p3@MEF2C!0.79!8.53!MEF2C;;chr7:27224842..27224872,-!p1@HOXA11!0.79!5.16!HOXA11;;chrY:2803415..2803468,+!p1@ZFY!0.79!5.16!ZFY;;chr5:176738887..176738934,-!p1@MXD3!0.78!36.82!MXD3;;chr18:53257001..53257015,-!p5@TCF4!0.78!8.98!TCF4;;chr20:42295745..42295765,+!p1@MYBL2!0.77!87.12!MYBL2;;chr13:41240717..41240735,-!p2@FOXO1!0.76!35.70!FOXO1;;chr3:168864315..168864339,-!p2@MECOM!0.76!8.31!MECOM;;chr13:41240737..41240787,-!p1@FOXO1!0.74!59.72!FOXO1;;chr7:149470641..149470694,-!p1@ZNF467!0.74!22.45!ZNF467;;chr2:25475120..25475176,-!p2@DNMT3A!0.74!6.29!DNMT3A;;chrX:66763815..66763854,+!p2@AR!0.74!6.06!AR;;chr8:106330696..106330719,+!p2@ZFPM2!0.74!5.84!ZFPM2;;chr13:72441506..72441562,-!p3@DACH1!0.74!4.49!DACH1;;chr4:146402843..146402864,+!p3@SMAD1!0.73!9.21!SMAD1;;chrX:66763856..66763896,+!p1@AR!0.73!6.51!AR;;chr6:28321909..28321965,-!p3@ZNF323!0.72!4.27!ZNF323;;chr11:128563652..128563689,+!p3@FLI1!0.72!4.27!FLI1;;chr17:46690839..46690884,-!p1@HOXB8!0.72!4.27!HOXB8;;chr18:22931979..22931992,-!p3@ZNF521!0.72!4.27!ZNF521;;chr18:19749541..19749557,+!p1@GATA6!0.71!14.37!GATA6;;chr20:42295713..42295738,+!p2@MYBL2!0.70!26.49!MYBL2;;chr11:113930291..113930339,+!p2@ZBTB16!0.70!6.96!ZBTB16;;chr17:6926381..6926392,+!p2@BCL6B!0.70!4.04!BCL6B;;chr9:14314066..14314075,-!p11@NFIB!0.70!4.04!NFIB;;chr20:590944..590960,-!p1@TCF15!0.70!4.04!TCF15;;chr15:57210961..57211012,+!p3@TCF12!0.68!13.47!TCF12;;chr17:46687935..46687950,-!p3@HOXB7!0.68!3.82!HOXB7;;chr12:2986275..2986363,-!p1@FOXM1!0.66!41.76!FOXM1;;chr9:14314522..14314556,-!p3@NFIB!0.66!9.21!NFIB;;chr11:113930425..113930471,+!p1@ZBTB16!0.66!5.39!ZBTB16;;chr17:46691732..46691766,-!p4@HOXB8!0.66!3.59!HOXB8;;chr7:15726220..15726236,-!p4@MEOX2!0.66!3.59!MEOX2;;chr7:27183291..27183324,-!p1@HOXA5!0.66!3.59!HOXA5;;chr15:77713299..77713316,+!p3@HMG20A!0.65!5.84!HMG20A;;chr6:126112074..126112144,+!p1@NCOA7!0.64!53.21!NCOA7;;chr18:53255415..53255491,-!p1@TCF4!0.64!33.23!TCF4;;chr6:130339710..130339745,+!p1@L3MBTL3!0.64!31.43!L3MBTL3;;chr17:41623692..41623715,-!p1@ETV4!0.64!16.39!ETV4;;chr18:53177984..53178004,-!p17@TCF4!0.64!3.37!TCF4;;chr10:94451574..94451587,+!p6@HHEX!0.64!3.37!HHEX;;chr8:30890810..30890880,-!p1@PURG!0.64!3.37!PURG;;chr8:93107451..93107468,-!p2@RUNX1T1!0.64!3.37!RUNX1T1;;chr9:14314946..14314983,-!p8@NFIB!0.64!3.37!NFIB;;chr1:61547894..61547968,+!p2@NFIA!0.63!10.78!NFIA;;chr1:205601000..205601055,-!p2@ELK4!0.62!15.27!ELK4;;chr5:88179017..88179046,-!p2@MEF2C!0.62!14.82!MEF2C;;chr12:3069037..3069119,+!p2@TEAD4!0.62!12.57!TEAD4;;chr11:128562372..128562397,+!p4@FLI1!0.62!3.14!FLI1;;chr12:80084018..80084035,-!p17@PAWR!0.62!3.14!PAWR;;chr9:22447422..22447483,+!p1@DMRTA1!0.62!3.14!DMRTA1;;chr18:53068940..53068951,-!p21@TCF4!0.62!3.14!TCF4;;chr7:27169801..27169844,-!p2@HOXA4!0.62!3.14!HOXA4;;chr19:49865646..49865718,-!p1@TEAD2!0.61!31.21!TEAD2;;chr3:178789522..178789564,-!p2@ZMAT3!0.61!26.72!ZMAT3;;chr12:66218152..66218174,+!p10@HMGA2!0.61!3.37!HMGA2;;chr20:42543441..42543497,+!p1@TOX2!0.60!15.72!TOX2;;chr9:116638565..116638606,+!p1@ZNF618!0.60!15.04!ZNF618;;chr6:29648890..29648944,-!p1@ZFP57!0.59!2.92!ZFP57;;chr7:27170359..27170381,-!p1@HOXA4!0.59!2.92!HOXA4;;chr7:27196267..27196311,-!p1@HOXA7!0.59!2.92!HOXA7;;chr1:47696918..47696935,-!p6@TAL1!0.59!2.92!TAL1;;chr18:53068893..53068902,-!p28@TCF4!0.59!2.92!TCF4;;chr19:13213465..13213478,-!p7@LYL1!0.59!2.92!LYL1;;chr12:27485823..27485868,+!p2@ARNTL2!0.57!13.25!ARNTL2;;chr17:46622114..46622138,-!p4@HOXB2!0.57!4.49!HOXB2;;chr3:25469815..25469866,+!p3@RARB!0.57!2.69!RARB;;chr5:88180342..88180365,-!p10@MEF2C!0.57!2.69!MEF2C;;chr7:139741594..139741615,-!p5@PARP12!0.57!2.69!PARP12;;chr1:158979686..158979745,+!p1@IFI16!0.56!108.90!IFI16;;chr1:205601093..205601158,-!p1@ELK4!0.56!29.19!ELK4;;chr17:41277372..41277418,-!p1@BRCA1!0.56!11.45!BRCA1;;chr3:114343826..114343869,-!p4@ZBTB20!0.56!6.06!ZBTB20;;chr3:33482052..33482116,-!p2@UBP1!0.56!4.49!UBP1;;chr12:66218378..66218401,+!p6@HMGA2!0.56!4.49!HMGA2;;chr17:41622925..41622976,-!p3@ETV4!0.56!4.27!ETV4;;chr19:58341656..58341694,+!p5@ZNF587!0.56!3.37!ZNF587;;chr1:61548225..61548299,+!p1@NFIA!0.55!42.44!NFIA;;chr12:3068544..3068597,+!p1@TEAD4!0.55!19.08!TEAD4;;chr20:31350184..31350200,+!p1@DNMT3B!0.55!6.06!DNMT3B;;chr15:96876966..96877017,+!p12@NR2F2!0.55!4.04!NR2F2;;chr2:85360499..85360598,+!p1@TCF7L1!0.54!17.29!TCF7L1;;chr12:80084167..80084197,-!p5@PAWR!0.54!6.74!PAWR;;chr15:96873861..96873872,+!p9@NR2F2!0.54!5.84!NR2F2;;chr19:13213662..13213686,-!p1@LYL1!0.54!4.04!LYL1;;chr12:66218443..66218461,+!p8@HMGA2!0.54!3.37!HMGA2;;chr17:41622834..41622883,-!p6@ETV4!0.54!3.14!ETV4;;chr6:85473156..85473210,-!p2@TBX18!0.54!3.14!TBX18;;chr17:46675420..46675465,-!p3@HOXB6!0.54!2.92!HOXB6;;chr19:13213555..13213568,-!p5@LYL1!0.54!2.47!LYL1;;chr10:45496320..45496336,+!p3@ZNF22!0.54!2.47!ZNF22;;chr12:66218904..66218913,+!p11@HMGA2!0.54!2.47!HMGA2;;chr13:79177703..79177729,-!p2@POU4F1!0.54!2.47!POU4F1;;chr1:47697881..47697910,-!p4@TAL1!0.54!2.47!TAL1;;chr3:169381183..169381205,-!p4@MECOM!0.54!2.47!MECOM;;chr9:14083467..14083483,-!p4@NFIB!0.53!6.96!NFIB;;chr1:61547781..61547809,+!p5@NFIA!0.53!5.61!NFIA;;chr1:61547811..61547837,+!p7@NFIA!0.53!3.82!NFIA;;chr10:31288398..31288455,-!p2@ZNF438!0.53!2.92!ZNF438;;chr10:31607702..31607755,+!p3@ZEB1!0.53!2.92!ZEB1;;chr2:46524897..46524911,+!p2@EPAS1!0.52!7.86!EPAS1;;chr1:8763296..8763339,-!p9@RERE!0.52!6.74!RERE;;chr15:96874145..96874166,+!p7@NR2F2!0.52!5.16!NR2F2;;chr19:53496806..53496848,-!p2@ZNF702P!0.52!3.82!ZNF702P;;chr4:146403912..146403972,+!p5@SMAD1!0.52!3.14!SMAD1;;chr3:71114066..71114114,-!p1@FOXP1!0.51!59.50!FOXP1;;chr12:27485785..27485816,+!p1@ARNTL2!0.51!20.21!ARNTL2;;chr18:77160282..77160343,+!p2@NFATC1!0.51!17.74!NFATC1;;chr7:86781916..86781963,+!p2@DMTF1!0.51!12.35!DMTF1;;chr1:158979680..158979683,+!p9@IFI16!0.51!3.37!IFI16;;chr7:27195867..27195893,-!p3@HOXA7!0.51!2.25!HOXA7;;chr7:27196217..27196246,-!p2@HOXA7!0.51!2.25!HOXA7;;chr8:93115508..93115552,-!p6@RUNX1T1!0.51!2.25!RUNX1T1;;chr17:46659728..46659749,-!p3@HOXB3!0.51!2.25!HOXB3;;chr9:14083091..14083096,-!p12@NFIB!0.51!2.25!NFIB;;chr6:31126291..31126399,+!p1@TCF19!0.50!26.72!TCF19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| |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.37!302.89!SOX18;;chr8:10588010..10588030,-!p1@SOX7!2.02!103.73!SOX7;;chr21:39870339..39870443,-!p1@ERG!2.00!99.24!ERG;;chr12:96588368..96588394,+!p3@ELK3!1.90!202.75!ELK3;;chr18:53068911..53068935,-!p4@TCF4!1.86!79.93!TCF4;;chr3:169381420..169381535,-!p1@MECOM!1.76!66.01!MECOM;;chr10:94449703..94449718,+!p1@HHEX!1.50!113.84!HHEX;;chr17:6926362..6926377,+!p1@BCL6B!1.50!30.54!BCL6B;;chr6:34204921..34204939,+!p3@HMGA1!1.47!825.59!HMGA1;;chr7:27205106..27205134,-!p2@HOXA9!1.45!27.39!HOXA9;;chr8:55370487..55370503,+!p1@SOX17!1.45!27.39!SOX17;;chr19:46801639..46801699,+!p1@HIF3A!1.39!23.80!HIF3A;;chr7:27205136..27205164,-!p1@HOXA9!1.36!22.00!HOXA9;;chr18:22932080..22932170,-!p1@ZNF521!1.35!88.69!ZNF521;;chr17:46682321..46682362,-!p1@HOXB6!1.34!20.88!HOXB6;;chr9:14314131..14314147,-!p2@NFIB!1.27!96.77!NFIB;;chr8:106330656..106330684,+!p1@ZFPM2!1.27!45.13!ZFPM2;;chr7:27192185..27192209,-!p1@HOXA3!1.27!17.74!HOXA3;;chr7:15726243..15726293,-!p2@MEOX2!1.25!16.84!MEOX2;;chr13:72441315..72441454,-!p1@DACH1!1.20!29.86!DACH1;;chr5:71803177..71803255,-!p1@ZNF366!1.20!14.82!ZNF366;;chr15:96873984..96873999,+!p3@NR2F2!1.15!95.20!NR2F2;;chr17:46655672..46655697,-!p3@HOXB4!1.15!13.25!HOXB4;;chr12:66218183..66218209,+!p4@HMGA2!1.12!23.58!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.12!17.96!HMGA2;;chr19:13213511..13213545,-!p2@LYL1!1.11!12.80!LYL1;;chr20:50159198..50159299,-!p1@NFATC2!1.10!16.84!NFATC2;;chr3:128206762..128206781,-!p2@GATA2!1.07!67.58!GATA2;;chr12:66218255..66218304,+!p3@HMGA2!1.07!29.19!HMGA2;;chr10:94449675..94449694,+!p2@HHEX!1.05!27.62!HHEX;;chrY:21906594..21906622,-!p1@KDM5D!1.05!10.33!KDM5D;;chr9:16705069..16705086,-!p3@BNC2!1.05!10.33!BNC2;;chr6:28321971..28321995,-!p1@ZNF323!1.05!10.33!ZNF323;;chr13:72441074..72441172,-!p2@DACH1!1.05!10.10!DACH1;;chr18:53068982..53068993,-!p20@TCF4!1.05!10.10!TCF4;;chr19:53496768..53496799,-!p1@ZNF702P!1.01!14.37!ZNF702P;;chr19:13213399..13213414,-!p6@LYL1!1.01!9.21!LYL1;;chr2:176994408..176994492,+!p1@HOXD8!1.01!9.21!HOXD8;;chr1:200008734..200008765,+!p2@NR5A2!1.00!8.98!NR5A2;;chr10:8096631..8096660,+!p1@GATA3!0.99!10.55!GATA3;;chr7:15726296..15726315,-!p1@MEOX2!0.99!8.76!MEOX2;;chr6:34204672..34204692,+!p1@HMGA1!0.97!954.03!HMGA1;;chr11:128563948..128564003,+!p1@FLI1!0.97!103.73!FLI1;;chr16:86600426..86600441,+!p1@FOXC2!0.96!20.66!FOXC2;;chr1:47695003..47695042,-!p2@TAL1!0.95!7.86!TAL1;;chr2:46524537..46524553,+!p1@EPAS1!0.93!763.85!EPAS1;;chr12:66218598..66218645,+!p2@HMGA2!0.93!35.92!HMGA2;;chr9:14314106..14314119,-!p5@NFIB!0.93!13.92!NFIB;;chr5:88178983..88179012,-!p1@MEF2C!0.92!58.38!MEF2C;;chr17:46688334..46688385,-!p1@HOXB7!0.92!10.78!HOXB7;;chr7:115670804..115670825,-!p1@TFEC!0.92!7.41!TFEC;;chr2:177001290..177001315,+!p1@HOXD3!0.90!6.96!HOXD3;;chr1:214161272..214161322,+!p1@PROX1!0.89!9.65!PROX1;;chr19:46800289..46800327,+!p2@HIF3A!0.89!6.74!HIF3A;;chr15:96873921..96873946,+!p1@NR2F2!0.88!197.81!NR2F2;;chr9:14314566..14314618,-!p1@NFIB!0.88!83.30!NFIB;;chr17:46655704..46655718,-!p2@HOXB4!0.87!9.88!HOXB4;;chr15:96874012..96874042,+!p2@NR2F2!0.86!60.17!NR2F2;;chr8:93115584..93115642,-!p5@RUNX1T1!0.85!6.06!RUNX1T1;;chr1:47697539..47697573,-!p3@TAL1!0.85!6.06!TAL1;;chr20:50721803..50721857,-!p2@ZFP64!0.84!9.65!ZFP64;;chr15:90544532..90544563,+!p1@ZNF710!0.83!12.12!ZNF710;;chr17:46687959..46688007,-!p2@HOXB7!0.83!8.08!HOXB7;;chr18:22932004..22932021,-!p2@ZNF521!0.83!5.84!ZNF521;;chr2:177053386..177053402,+!p1@HOXD1!0.83!5.84!HOXD1;;chr10:31288370..31288393,-!p3@ZNF438!0.83!5.84!ZNF438;;chr3:168865194..168865245,-!p3@MECOM!0.82!7.41!MECOM;;chr22:19748231..19748317,+!p1@TBX1!0.82!5.61!TBX1;;chr9:124991204..124991246,-!p1@LHX6!0.81!5.39!LHX6;;chr12:66218836..66218888,+!p1@HMGA2!0.79!52.54!HMGA2;;chr12:2986206..2986258,-!p2@FOXM1!0.79!33.68!FOXM1;;chr1:205601064..205601087,-!p4@ELK4!0.79!10.55!ELK4;;chr5:88179195..88179224,-!p3@MEF2C!0.79!8.53!MEF2C;;chr7:27224842..27224872,-!p1@HOXA11!0.79!5.16!HOXA11;;chrY:2803415..2803468,+!p1@ZFY!0.79!5.16!ZFY;;chr5:176738887..176738934,-!p1@MXD3!0.78!36.82!MXD3;;chr18:53257001..53257015,-!p5@TCF4!0.78!8.98!TCF4;;chr20:42295745..42295765,+!p1@MYBL2!0.77!87.12!MYBL2;;chr13:41240717..41240735,-!p2@FOXO1!0.76!35.70!FOXO1;;chr3:168864315..168864339,-!p2@MECOM!0.76!8.31!MECOM;;chr13:41240737..41240787,-!p1@FOXO1!0.74!59.72!FOXO1;;chr7:149470641..149470694,-!p1@ZNF467!0.74!22.45!ZNF467;;chr2:25475120..25475176,-!p2@DNMT3A!0.74!6.29!DNMT3A;;chrX:66763815..66763854,+!p2@AR!0.74!6.06!AR;;chr8:106330696..106330719,+!p2@ZFPM2!0.74!5.84!ZFPM2;;chr13:72441506..72441562,-!p3@DACH1!0.74!4.49!DACH1;;chr4:146402843..146402864,+!p3@SMAD1!0.73!9.21!SMAD1;;chrX:66763856..66763896,+!p1@AR!0.73!6.51!AR;;chr6:28321909..28321965,-!p3@ZNF323!0.72!4.27!ZNF323;;chr11:128563652..128563689,+!p3@FLI1!0.72!4.27!FLI1;;chr17:46690839..46690884,-!p1@HOXB8!0.72!4.27!HOXB8;;chr18:22931979..22931992,-!p3@ZNF521!0.72!4.27!ZNF521;;chr18:19749541..19749557,+!p1@GATA6!0.71!14.37!GATA6;;chr20:42295713..42295738,+!p2@MYBL2!0.70!26.49!MYBL2;;chr11:113930291..113930339,+!p2@ZBTB16!0.70!6.96!ZBTB16;;chr17:6926381..6926392,+!p2@BCL6B!0.70!4.04!BCL6B;;chr9:14314066..14314075,-!p11@NFIB!0.70!4.04!NFIB;;chr20:590944..590960,-!p1@TCF15!0.70!4.04!TCF15;;chr15:57210961..57211012,+!p3@TCF12!0.68!13.47!TCF12;;chr17:46687935..46687950,-!p3@HOXB7!0.68!3.82!HOXB7;;chr12:2986275..2986363,-!p1@FOXM1!0.66!41.76!FOXM1;;chr9:14314522..14314556,-!p3@NFIB!0.66!9.21!NFIB;;chr11:113930425..113930471,+!p1@ZBTB16!0.66!5.39!ZBTB16;;chr17:46691732..46691766,-!p4@HOXB8!0.66!3.59!HOXB8;;chr7:15726220..15726236,-!p4@MEOX2!0.66!3.59!MEOX2;;chr7:27183291..27183324,-!p1@HOXA5!0.66!3.59!HOXA5;;chr15:77713299..77713316,+!p3@HMG20A!0.65!5.84!HMG20A;;chr6:126112074..126112144,+!p1@NCOA7!0.64!53.21!NCOA7;;chr18:53255415..53255491,-!p1@TCF4!0.64!33.23!TCF4;;chr6:130339710..130339745,+!p1@L3MBTL3!0.64!31.43!L3MBTL3;;chr17:41623692..41623715,-!p1@ETV4!0.64!16.39!ETV4;;chr18:53177984..53178004,-!p17@TCF4!0.64!3.37!TCF4;;chr10:94451574..94451587,+!p6@HHEX!0.64!3.37!HHEX;;chr8:30890810..30890880,-!p1@PURG!0.64!3.37!PURG;;chr8:93107451..93107468,-!p2@RUNX1T1!0.64!3.37!RUNX1T1;;chr9:14314946..14314983,-!p8@NFIB!0.64!3.37!NFIB;;chr1:61547894..61547968,+!p2@NFIA!0.63!10.78!NFIA;;chr1:205601000..205601055,-!p2@ELK4!0.62!15.27!ELK4;;chr5:88179017..88179046,-!p2@MEF2C!0.62!14.82!MEF2C;;chr12:3069037..3069119,+!p2@TEAD4!0.62!12.57!TEAD4;;chr11:128562372..128562397,+!p4@FLI1!0.62!3.14!FLI1;;chr12:80084018..80084035,-!p17@PAWR!0.62!3.14!PAWR;;chr9:22447422..22447483,+!p1@DMRTA1!0.62!3.14!DMRTA1;;chr18:53068940..53068951,-!p21@TCF4!0.62!3.14!TCF4;;chr7:27169801..27169844,-!p2@HOXA4!0.62!3.14!HOXA4;;chr19:49865646..49865718,-!p1@TEAD2!0.61!31.21!TEAD2;;chr3:178789522..178789564,-!p2@ZMAT3!0.61!26.72!ZMAT3;;chr12:66218152..66218174,+!p10@HMGA2!0.61!3.37!HMGA2;;chr20:42543441..42543497,+!p1@TOX2!0.60!15.72!TOX2;;chr9:116638565..116638606,+!p1@ZNF618!0.60!15.04!ZNF618;;chr6:29648890..29648944,-!p1@ZFP57!0.59!2.92!ZFP57;;chr7:27170359..27170381,-!p1@HOXA4!0.59!2.92!HOXA4;;chr7:27196267..27196311,-!p1@HOXA7!0.59!2.92!HOXA7;;chr1:47696918..47696935,-!p6@TAL1!0.59!2.92!TAL1;;chr18:53068893..53068902,-!p28@TCF4!0.59!2.92!TCF4;;chr19:13213465..13213478,-!p7@LYL1!0.59!2.92!LYL1;;chr12:27485823..27485868,+!p2@ARNTL2!0.57!13.25!ARNTL2;;chr17:46622114..46622138,-!p4@HOXB2!0.57!4.49!HOXB2;;chr3:25469815..25469866,+!p3@RARB!0.57!2.69!RARB;;chr5:88180342..88180365,-!p10@MEF2C!0.57!2.69!MEF2C;;chr7:139741594..139741615,-!p5@PARP12!0.57!2.69!PARP12;;chr1:158979686..158979745,+!p1@IFI16!0.56!108.90!IFI16;;chr1:205601093..205601158,-!p1@ELK4!0.56!29.19!ELK4;;chr17:41277372..41277418,-!p1@BRCA1!0.56!11.45!BRCA1;;chr3:114343826..114343869,-!p4@ZBTB20!0.56!6.06!ZBTB20;;chr3:33482052..33482116,-!p2@UBP1!0.56!4.49!UBP1;;chr12:66218378..66218401,+!p6@HMGA2!0.56!4.49!HMGA2;;chr17:41622925..41622976,-!p3@ETV4!0.56!4.27!ETV4;;chr19:58341656..58341694,+!p5@ZNF587!0.56!3.37!ZNF587;;chr1:61548225..61548299,+!p1@NFIA!0.55!42.44!NFIA;;chr12:3068544..3068597,+!p1@TEAD4!0.55!19.08!TEAD4;;chr20:31350184..31350200,+!p1@DNMT3B!0.55!6.06!DNMT3B;;chr15:96876966..96877017,+!p12@NR2F2!0.55!4.04!NR2F2;;chr2:85360499..85360598,+!p1@TCF7L1!0.54!17.29!TCF7L1;;chr12:80084167..80084197,-!p5@PAWR!0.54!6.74!PAWR;;chr15:96873861..96873872,+!p9@NR2F2!0.54!5.84!NR2F2;;chr19:13213662..13213686,-!p1@LYL1!0.54!4.04!LYL1;;chr12:66218443..66218461,+!p8@HMGA2!0.54!3.37!HMGA2;;chr17:41622834..41622883,-!p6@ETV4!0.54!3.14!ETV4;;chr6:85473156..85473210,-!p2@TBX18!0.54!3.14!TBX18;;chr17:46675420..46675465,-!p3@HOXB6!0.54!2.92!HOXB6;;chr19:13213555..13213568,-!p5@LYL1!0.54!2.47!LYL1;;chr10:45496320..45496336,+!p3@ZNF22!0.54!2.47!ZNF22;;chr12:66218904..66218913,+!p11@HMGA2!0.54!2.47!HMGA2;;chr13:79177703..79177729,-!p2@POU4F1!0.54!2.47!POU4F1;;chr1:47697881..47697910,-!p4@TAL1!0.54!2.47!TAL1;;chr3:169381183..169381205,-!p4@MECOM!0.54!2.47!MECOM;;chr9:14083467..14083483,-!p4@NFIB!0.53!6.96!NFIB;;chr1:61547781..61547809,+!p5@NFIA!0.53!5.61!NFIA;;chr1:61547811..61547837,+!p7@NFIA!0.53!3.82!NFIA;;chr10:31288398..31288455,-!p2@ZNF438!0.53!2.92!ZNF438;;chr10:31607702..31607755,+!p3@ZEB1!0.53!2.92!ZEB1;;chr2:46524897..46524911,+!p2@EPAS1!0.52!7.86!EPAS1;;chr1:8763296..8763339,-!p9@RERE!0.52!6.74!RERE;;chr15:96874145..96874166,+!p7@NR2F2!0.52!5.16!NR2F2;;chr19:53496806..53496848,-!p2@ZNF702P!0.52!3.82!ZNF702P;;chr4:146403912..146403972,+!p5@SMAD1!0.52!3.14!SMAD1;;chr3:71114066..71114114,-!p1@FOXP1!0.51!59.50!FOXP1;;chr12:27485785..27485816,+!p1@ARNTL2!0.51!20.21!ARNTL2;;chr18:77160282..77160343,+!p2@NFATC1!0.51!17.74!NFATC1;;chr7:86781916..86781963,+!p2@DMTF1!0.51!12.35!DMTF1;;chr1:158979680..158979683,+!p9@IFI16!0.51!3.37!IFI16;;chr7:27195867..27195893,-!p3@HOXA7!0.51!2.25!HOXA7;;chr7:27196217..27196246,-!p2@HOXA7!0.51!2.25!HOXA7;;chr8:93115508..93115552,-!p6@RUNX1T1!0.51!2.25!RUNX1T1;;chr17:46659728..46659749,-!p3@HOXB3!0.51!2.25!HOXB3;;chr9:14083091..14083096,-!p12@NFIB!0.51!2.25!NFIB;;chr6:31126291..31126399,+!p1@TCF19!0.50!26.72!TCF19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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002543;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002618;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001638;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010260 | |||
|ffid_belonging_in_development=CL:0002546,CL:0000222 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor2.CNhs11967.11324-117E1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor2.CNhs11967.11324-117E1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor2.CNhs11967.11324-117E1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor2.CNhs11967.11324-117E1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor2.CNhs11967.11324-117E1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11324-117E1 | |id=FF:11324-117E1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000247 | ||
|is_obsolete= | |||
|library_id=CNhs11967 | |||
|library_id_phase_based=2:CNhs11967 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11324 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.AGTCAA.11324 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11324 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.AGTCAA.11324 | |||
|name=Endothelial Cells - Umbilical vein, donor2 | |name=Endothelial Cells - Umbilical vein, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11967,LSID836,release011,COMPLETED | |profile_hcage=CNhs11967,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10007,,, | |profile_srnaseq=SRhi10007,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=SC8005 | |rna_catalog_number=SC8005 | ||
| Line 54: | Line 80: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.17E+03 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10007.AGTCAA | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 105: | ||
|sample_tissue=umbilical vein | |sample_tissue=umbilical vein | ||
|top_motifs=IKZF2:1.62121988416;SOX{8,9,10}:1.52830448088;PAX1,9:1.52790598131;RXR{A,B,G}:1.52271014104;HBP1_HMGB_SSRP1_UBTF:1.22325440336;NFATC1..3:1.15441467686;PAX6:1.13497565038;ALX1:1.06767055063;ADNP_IRX_SIX_ZHX:1.0630229906;TFDP1:0.990712677111;ZFP161:0.958735492842;TLX1..3_NFIC{dimer}:0.880721483902;SOX5:0.844967200216;TFAP2{A,C}:0.831591933974;NFY{A,B,C}:0.819629594922;E2F1..5:0.812414490301;GATA6:0.784549822323;AR:0.743297687011;SOX2:0.712984271448;POU3F1..4:0.705758784046;ELF1,2,4:0.640430526981;SOX17:0.606052313999;PBX1:0.600324350256;ZNF143:0.585266203846;RBPJ:0.578389315958;HIC1:0.56864225327;ONECUT1,2:0.550274580474;XCPE1{core}:0.528526558049;TFAP4:0.522180265916;MYB:0.51285478711;CDC5L:0.512108648923;GFI1:0.501720769071;NRF1:0.501261606351;ETS1,2:0.49127812438;PITX1..3:0.475277642233;GFI1B:0.444817667453;FOXD3:0.429483515292;STAT1,3:0.416191446909;EGR1..3:0.409534719974;SP1:0.406777601905;FOXQ1:0.399598526326;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.391832813418;POU1F1:0.385224403494;YY1:0.357272791332;SPIB:0.33976109295;IKZF1:0.336166218769;FOX{I1,J2}:0.330613860889;TFAP2B:0.317617678398;RORA:0.314519298865;LEF1_TCF7_TCF7L1,2:0.276795356117;TEAD1:0.27029761916;HOXA9_MEIS1:0.259787206104;CUX2:0.249619540143;GATA4:0.24280266312;MED-1{core}:0.241179308322;FOXA2:0.237383248458;ARID5B:0.228656675536;STAT5{A,B}:0.219505991751;NANOG:0.200165002554;EN1,2:0.196698910232;PAX8:0.176553953615;NR5A1,2:0.1722394811;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.15544338056;ATF6:0.143158989977;MZF1:0.130495559283;HNF4A_NR2F1,2:0.118500784074;MTE{core}:0.0954309746299;NANOG{mouse}:0.0943741310096;PRDM1:0.0863130183431;BREu{core}:0.0819724535387;GTF2I:0.077178774411;MYOD1:0.0727826669551;ZNF423:0.0701031535059;GZF1:0.0635391846707;FOXP1:0.0587178189524;HOX{A5,B5}:0.0571464280033;NKX2-3_NKX2-5:0.0472248392264;SREBF1,2:0.0395088821645;MAZ:0.0328676770629;SPI1:0.0263465397913;REST:0.0218462597034;FOXN1:0.00456351966674;POU5F1:-0.00912624617478;LHX3,4:-0.0118241257972;HES1:-0.0164431135265;PATZ1:-0.0241707948346;ZNF238:-0.0246591514321;PRRX1,2:-0.0309950487827;BACH2:-0.0321950380793;TEF:-0.0460266588816;TGIF1:-0.0506935692788;EBF1:-0.0527096915067;DMAP1_NCOR{1,2}_SMARC:-0.0598222316545;ZBTB6:-0.0641239041718;GTF2A1,2:-0.066489588884;PAX5:-0.0715000950006;TAL1_TCF{3,4,12}:-0.0781011065555;PAX3,7:-0.0796337418953;ZNF148:-0.0812661495822;NFE2:-0.081400175245;TP53:-0.0980664688448;T:-0.105781012683;bHLH_family:-0.112659770955;MEF2{A,B,C,D}:-0.121689371868;POU6F1:-0.121897510723;FOS_FOS{B,L1}_JUN{B,D}:-0.127868188891;ZBTB16:-0.141130348918;STAT2,4,6:-0.148494542356;CDX1,2,4:-0.150317688664;CREB1:-0.152503304046;FOSL2:-0.163163923095;FOXO1,3,4:-0.163738217666;NFE2L2:-0.181931960484;EVI1:-0.19096915915;SMAD1..7,9:-0.194731476179;BPTF:-0.20023686057;POU2F1..3:-0.215136536229;ZIC1..3:-0.216280346901;HNF1A:-0.221818183104;IRF1,2:-0.236680423063;HMGA1,2:-0.237936020585;PPARG:-0.246056651233;GCM1,2:-0.262903397564;NR3C1:-0.26846027921;AIRE:-0.269693602457;XBP1:-0.271156141499;PDX1:-0.280196544511;FOX{D1,D2}:-0.286553804923;NHLH1,2:-0.2956823903;AHR_ARNT_ARNT2:-0.305844053245;NFIX:-0.308853313431;LMO2:-0.328430524198;UFEwm:-0.337377410597;CRX:-0.346150018162;HOX{A6,A7,B6,B7}:-0.354533105197;KLF4:-0.359994708538;GLI1..3:-0.372448641905;MYBL2:-0.375794045353;NKX2-2,8:-0.39483032987;NFKB1_REL_RELA:-0.401010836306;PAX2:-0.401184285137;MTF1:-0.408187754555;OCT4_SOX2{dimer}:-0.445431481179;NR1H4:-0.447253134325;SPZ1:-0.448415351264;FOX{F1,F2,J1}:-0.453486369952;RFX1:-0.484591063544;FOXM1:-0.489600821126;IRF7:-0.489976435926;FOXL1:-0.492243079717;ZNF384:-0.504804321153;SRF:-0.518102123214;MYFfamily:-0.521455563236;ATF2:-0.544343437543;HLF:-0.565640145316;SNAI1..3:-0.602304930241;ESRRA:-0.603312011098;PAX4:-0.609809989613;ATF4:-0.627727382831;ELK1,4_GABP{A,B1}:-0.664028499185;RUNX1..3:-0.679563908834;RXRA_VDR{dimer}:-0.682551868057;NKX3-1:-0.682975028241;HAND1,2:-0.691093846949;TOPORS:-0.691826136957;CEBPA,B_DDIT3:-0.69901408669;RREB1:-0.710556257869;DBP:-0.766886459482;NKX3-2:-0.773596022208;HOX{A4,D4}:-0.779739692658;NKX6-1,2:-0.795942736408;TBP:-0.825987970148;ATF5_CREB3:-0.860477162819;ALX4:-0.861534897138;RFX2..5_RFXANK_RFXAP:-0.870628197901;VSX1,2:-0.891942652052;FOXP3:-0.898227883187;ZEB1:-0.908146092826;TBX4,5:-0.916890764359;JUN:-0.93527710696;EP300:-0.973041528494;NFIL3:-0.981775910225;TLX2:-0.985138694406;TFCP2:-1.01299409309;HSF1,2:-1.0205857386;NKX2-1,4:-1.03547262318;NFE2L1:-1.05060566142;ESR1:-1.05710869203;MAFB:-1.11927030891;NR6A1:-1.14376249855;HIF1A:-1.16704845573;HMX1:-1.28966714162 | |top_motifs=IKZF2:1.62121988416;SOX{8,9,10}:1.52830448088;PAX1,9:1.52790598131;RXR{A,B,G}:1.52271014104;HBP1_HMGB_SSRP1_UBTF:1.22325440336;NFATC1..3:1.15441467686;PAX6:1.13497565038;ALX1:1.06767055063;ADNP_IRX_SIX_ZHX:1.0630229906;TFDP1:0.990712677111;ZFP161:0.958735492842;TLX1..3_NFIC{dimer}:0.880721483902;SOX5:0.844967200216;TFAP2{A,C}:0.831591933974;NFY{A,B,C}:0.819629594922;E2F1..5:0.812414490301;GATA6:0.784549822323;AR:0.743297687011;SOX2:0.712984271448;POU3F1..4:0.705758784046;ELF1,2,4:0.640430526981;SOX17:0.606052313999;PBX1:0.600324350256;ZNF143:0.585266203846;RBPJ:0.578389315958;HIC1:0.56864225327;ONECUT1,2:0.550274580474;XCPE1{core}:0.528526558049;TFAP4:0.522180265916;MYB:0.51285478711;CDC5L:0.512108648923;GFI1:0.501720769071;NRF1:0.501261606351;ETS1,2:0.49127812438;PITX1..3:0.475277642233;GFI1B:0.444817667453;FOXD3:0.429483515292;STAT1,3:0.416191446909;EGR1..3:0.409534719974;SP1:0.406777601905;FOXQ1:0.399598526326;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.391832813418;POU1F1:0.385224403494;YY1:0.357272791332;SPIB:0.33976109295;IKZF1:0.336166218769;FOX{I1,J2}:0.330613860889;TFAP2B:0.317617678398;RORA:0.314519298865;LEF1_TCF7_TCF7L1,2:0.276795356117;TEAD1:0.27029761916;HOXA9_MEIS1:0.259787206104;CUX2:0.249619540143;GATA4:0.24280266312;MED-1{core}:0.241179308322;FOXA2:0.237383248458;ARID5B:0.228656675536;STAT5{A,B}:0.219505991751;NANOG:0.200165002554;EN1,2:0.196698910232;PAX8:0.176553953615;NR5A1,2:0.1722394811;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.15544338056;ATF6:0.143158989977;MZF1:0.130495559283;HNF4A_NR2F1,2:0.118500784074;MTE{core}:0.0954309746299;NANOG{mouse}:0.0943741310096;PRDM1:0.0863130183431;BREu{core}:0.0819724535387;GTF2I:0.077178774411;MYOD1:0.0727826669551;ZNF423:0.0701031535059;GZF1:0.0635391846707;FOXP1:0.0587178189524;HOX{A5,B5}:0.0571464280033;NKX2-3_NKX2-5:0.0472248392264;SREBF1,2:0.0395088821645;MAZ:0.0328676770629;SPI1:0.0263465397913;REST:0.0218462597034;FOXN1:0.00456351966674;POU5F1:-0.00912624617478;LHX3,4:-0.0118241257972;HES1:-0.0164431135265;PATZ1:-0.0241707948346;ZNF238:-0.0246591514321;PRRX1,2:-0.0309950487827;BACH2:-0.0321950380793;TEF:-0.0460266588816;TGIF1:-0.0506935692788;EBF1:-0.0527096915067;DMAP1_NCOR{1,2}_SMARC:-0.0598222316545;ZBTB6:-0.0641239041718;GTF2A1,2:-0.066489588884;PAX5:-0.0715000950006;TAL1_TCF{3,4,12}:-0.0781011065555;PAX3,7:-0.0796337418953;ZNF148:-0.0812661495822;NFE2:-0.081400175245;TP53:-0.0980664688448;T:-0.105781012683;bHLH_family:-0.112659770955;MEF2{A,B,C,D}:-0.121689371868;POU6F1:-0.121897510723;FOS_FOS{B,L1}_JUN{B,D}:-0.127868188891;ZBTB16:-0.141130348918;STAT2,4,6:-0.148494542356;CDX1,2,4:-0.150317688664;CREB1:-0.152503304046;FOSL2:-0.163163923095;FOXO1,3,4:-0.163738217666;NFE2L2:-0.181931960484;EVI1:-0.19096915915;SMAD1..7,9:-0.194731476179;BPTF:-0.20023686057;POU2F1..3:-0.215136536229;ZIC1..3:-0.216280346901;HNF1A:-0.221818183104;IRF1,2:-0.236680423063;HMGA1,2:-0.237936020585;PPARG:-0.246056651233;GCM1,2:-0.262903397564;NR3C1:-0.26846027921;AIRE:-0.269693602457;XBP1:-0.271156141499;PDX1:-0.280196544511;FOX{D1,D2}:-0.286553804923;NHLH1,2:-0.2956823903;AHR_ARNT_ARNT2:-0.305844053245;NFIX:-0.308853313431;LMO2:-0.328430524198;UFEwm:-0.337377410597;CRX:-0.346150018162;HOX{A6,A7,B6,B7}:-0.354533105197;KLF4:-0.359994708538;GLI1..3:-0.372448641905;MYBL2:-0.375794045353;NKX2-2,8:-0.39483032987;NFKB1_REL_RELA:-0.401010836306;PAX2:-0.401184285137;MTF1:-0.408187754555;OCT4_SOX2{dimer}:-0.445431481179;NR1H4:-0.447253134325;SPZ1:-0.448415351264;FOX{F1,F2,J1}:-0.453486369952;RFX1:-0.484591063544;FOXM1:-0.489600821126;IRF7:-0.489976435926;FOXL1:-0.492243079717;ZNF384:-0.504804321153;SRF:-0.518102123214;MYFfamily:-0.521455563236;ATF2:-0.544343437543;HLF:-0.565640145316;SNAI1..3:-0.602304930241;ESRRA:-0.603312011098;PAX4:-0.609809989613;ATF4:-0.627727382831;ELK1,4_GABP{A,B1}:-0.664028499185;RUNX1..3:-0.679563908834;RXRA_VDR{dimer}:-0.682551868057;NKX3-1:-0.682975028241;HAND1,2:-0.691093846949;TOPORS:-0.691826136957;CEBPA,B_DDIT3:-0.69901408669;RREB1:-0.710556257869;DBP:-0.766886459482;NKX3-2:-0.773596022208;HOX{A4,D4}:-0.779739692658;NKX6-1,2:-0.795942736408;TBP:-0.825987970148;ATF5_CREB3:-0.860477162819;ALX4:-0.861534897138;RFX2..5_RFXANK_RFXAP:-0.870628197901;VSX1,2:-0.891942652052;FOXP3:-0.898227883187;ZEB1:-0.908146092826;TBX4,5:-0.916890764359;JUN:-0.93527710696;EP300:-0.973041528494;NFIL3:-0.981775910225;TLX2:-0.985138694406;TFCP2:-1.01299409309;HSF1,2:-1.0205857386;NKX2-1,4:-1.03547262318;NFE2L1:-1.05060566142;ESR1:-1.05710869203;MAFB:-1.11927030891;NR6A1:-1.14376249855;HIF1A:-1.16704845573;HMX1:-1.28966714162 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11324-117E1;search_select_hide=table117:FF:11324-117E1 | |||
}} | }} | ||
Latest revision as of 17:52, 4 June 2020
| Name: | Endothelial Cells - Umbilical vein, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11967 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11967
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11967
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.226 |
| 10 | 10 | 0.171 |
| 100 | 100 | 0.767 |
| 101 | 101 | 0.348 |
| 102 | 102 | 0.771 |
| 103 | 103 | 0.364 |
| 104 | 104 | 0.683 |
| 105 | 105 | 0.587 |
| 106 | 106 | 0.00656 |
| 107 | 107 | 0.355 |
| 108 | 108 | 0.631 |
| 109 | 109 | 0.106 |
| 11 | 11 | 0.244 |
| 110 | 110 | 0.879 |
| 111 | 111 | 0.202 |
| 112 | 112 | 0.153 |
| 113 | 113 | 0.0963 |
| 114 | 114 | 0.115 |
| 115 | 115 | 0.626 |
| 116 | 116 | 0.292 |
| 117 | 117 | 0.563 |
| 118 | 118 | 0.431 |
| 119 | 119 | 0.325 |
| 12 | 12 | 0.923 |
| 120 | 120 | 0.594 |
| 121 | 121 | 0.421 |
| 122 | 122 | 0.719 |
| 123 | 123 | 0.22 |
| 124 | 124 | 0.0216 |
| 125 | 125 | 0.238 |
| 126 | 126 | 0.524 |
| 127 | 127 | 0.3 |
| 128 | 128 | 0.299 |
| 129 | 129 | 0.816 |
| 13 | 13 | 0.435 |
| 130 | 130 | 0.159 |
| 131 | 131 | 0.164 |
| 132 | 132 | 0.929 |
| 133 | 133 | 0.88 |
| 134 | 134 | 0.601 |
| 135 | 135 | 0.624 |
| 136 | 136 | 0.0958 |
| 137 | 137 | 0.0729 |
| 138 | 138 | 0.947 |
| 139 | 139 | 0.00718 |
| 14 | 14 | 0.465 |
| 140 | 140 | 0.194 |
| 141 | 141 | 0.697 |
| 142 | 142 | 0.0252 |
| 143 | 143 | 0.0389 |
| 144 | 144 | 0.716 |
| 145 | 145 | 0.578 |
| 146 | 146 | 0.522 |
| 147 | 147 | 0.926 |
| 148 | 148 | 0.00168 |
| 149 | 149 | 0.975 |
| 15 | 15 | 0.175 |
| 150 | 150 | 0.693 |
| 151 | 151 | 0.268 |
| 152 | 152 | 0.868 |
| 153 | 153 | 0.0106 |
| 154 | 154 | 0.846 |
| 155 | 155 | 0.172 |
| 156 | 156 | 0.229 |
| 157 | 157 | 0.0605 |
| 158 | 158 | 0.134 |
| 159 | 159 | 0.18 |
| 16 | 16 | 0.132 |
| 160 | 160 | 0.997 |
| 161 | 161 | 0.0574 |
| 162 | 162 | 0.621 |
| 163 | 163 | 0.758 |
| 164 | 164 | 0.897 |
| 165 | 165 | 0.33 |
| 166 | 166 | 0.87 |
| 167 | 167 | 0.0469 |
| 168 | 168 | 0.429 |
| 169 | 169 | 0.16 |
| 17 | 17 | 0.18 |
| 18 | 18 | 0.0171 |
| 19 | 19 | 0.299 |
| 2 | 2 | 0.521 |
| 20 | 20 | 0.418 |
| 21 | 21 | 0.502 |
| 22 | 22 | 0.451 |
| 23 | 23 | 0.0931 |
| 24 | 24 | 0.513 |
| 25 | 25 | 0.355 |
| 26 | 26 | 0.0605 |
| 27 | 27 | 0.254 |
| 28 | 28 | 0.54 |
| 29 | 29 | 0.189 |
| 3 | 3 | 0.141 |
| 30 | 30 | 0.687 |
| 31 | 31 | 0.305 |
| 32 | 32 | 0.00738 |
| 33 | 33 | 0.917 |
| 34 | 34 | 0.424 |
| 35 | 35 | 0.0713 |
| 36 | 36 | 0.792 |
| 37 | 37 | 0.183 |
| 38 | 38 | 0.874 |
| 39 | 39 | 0.898 |
| 4 | 4 | 0.29 |
| 40 | 40 | 0.381 |
| 41 | 41 | 0.901 |
| 42 | 42 | 0.74 |
| 43 | 43 | 0.066 |
| 44 | 44 | 0.119 |
| 45 | 45 | 0.766 |
| 46 | 46 | 0.0443 |
| 47 | 47 | 0.34 |
| 48 | 48 | 0.674 |
| 49 | 49 | 0.0885 |
| 5 | 5 | 0.0864 |
| 50 | 50 | 0.957 |
| 51 | 51 | 0.435 |
| 52 | 52 | 0.302 |
| 53 | 53 | 0.58 |
| 54 | 54 | 0.314 |
| 55 | 55 | 0.434 |
| 56 | 56 | 0.476 |
| 57 | 57 | 0.592 |
| 58 | 58 | 0.0739 |
| 59 | 59 | 0.213 |
| 6 | 6 | 0.153 |
| 60 | 60 | 0.0516 |
| 61 | 61 | 0.654 |
| 62 | 62 | 0.0468 |
| 63 | 63 | 0.31 |
| 64 | 64 | 0.293 |
| 65 | 65 | 0.214 |
| 66 | 66 | 0.238 |
| 67 | 67 | 0.608 |
| 68 | 68 | 0.899 |
| 69 | 69 | 0.775 |
| 7 | 7 | 0.663 |
| 70 | 70 | 5.18598e-4 |
| 71 | 71 | 0.0322 |
| 72 | 72 | 0.64 |
| 73 | 73 | 0.982 |
| 74 | 74 | 0.392 |
| 75 | 75 | 0.366 |
| 76 | 76 | 0.907 |
| 77 | 77 | 0.0547 |
| 78 | 78 | 0.649 |
| 79 | 79 | 0.0733 |
| 8 | 8 | 0.616 |
| 80 | 80 | 0.364 |
| 81 | 81 | 0.0818 |
| 82 | 82 | 0.0489 |
| 83 | 83 | 0.631 |
| 84 | 84 | 0.968 |
| 85 | 85 | 0.0267 |
| 86 | 86 | 0.754 |
| 87 | 87 | 0.653 |
| 88 | 88 | 0.272 |
| 89 | 89 | 0.0415 |
| 9 | 9 | 0.668 |
| 90 | 90 | 0.803 |
| 91 | 91 | 0.672 |
| 92 | 92 | 0.145 |
| 93 | 93 | 0.612 |
| 94 | 94 | 0.00809 |
| 95 | 95 | 0.457 |
| 96 | 96 | 0.411 |
| 97 | 97 | 0.385 |
| 98 | 98 | 0.391 |
| 99 | 99 | 0.392 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11967
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000247 human endothelial cell of umbilical vein sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002543 (vein endothelial cell)
0002618 (endothelial cell of umbilical vein)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0010260 (umbilical blood vessel)
0003920 (venous blood vessel)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0002066 (umbilical vein)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000052 (human endothelial cell of the vein sample)
0000247 (human endothelial cell of umbilical vein sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)
