FF:11324-117E1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004959 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004959 | ||
|accession_numbers=CAGE;DRX008232;DRR009104;DRZ000529;DRZ001914;DRZ011879;DRZ013264 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037098;DRR041464;DRZ007106 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0010260,UBERON:0003920,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002543,CL:0002618 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000001,FF:0000052,FF:0000247 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor2.CNhs11967.11324-117E1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor2.CNhs11967.11324-117E1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor2.CNhs11967.11324-117E1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor2.CNhs11967.11324-117E1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor2.CNhs11967.11324-117E1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11324-117E1 | |id=FF:11324-117E1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000247 | ||
|is_obsolete= | |||
|library_id=CNhs11967 | |||
|library_id_phase_based=2:CNhs11967 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11324 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.AGTCAA.11324 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11324 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.AGTCAA.11324 | |||
|name=Endothelial Cells - Umbilical vein, donor2 | |name=Endothelial Cells - Umbilical vein, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11967,LSID836,release011,COMPLETED | |profile_hcage=CNhs11967,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10007,,, | |profile_srnaseq=SRhi10007,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0633305537128188,0,0.165248557085126,-0.0971307108472425,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293250654102785,0,0,0,0.360742822337529,0,-0.00998868931735263,0,0,-0.0449873828281574,0,0,0,0,0,0,0,0,0,0,0.161085992249488,0,0.174846964121679,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0455325288860626,0,-0.0969923612426051,0,0,0.229534121003615,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.080542996124744,0,0,0,0,0.000511761919612774,0.174945216721504,0.0439846034753525,0,0,0.421038671111601,0.130190890467568,0,0,0,0,-0.0980353512377064,-0.0579342046761515,0,0,0,0.087969206950705,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0523889904471085,0,0,0,0.0798680291653668,0.0381959895891595,0,0,0,0,0,0 | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=SC8005 | |rna_catalog_number=SC8005 | ||
| Line 54: | Line 80: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.17E+03 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10007.AGTCAA | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.96678374249299e-267!GO:0043226;organelle;1.90126039944699e-211!GO:0043229;intracellular organelle;6.42466124671872e-211!GO:0043231;intracellular membrane-bound organelle;1.72834001318885e-202!GO:0043227;membrane-bound organelle;3.61482637607111e-202!GO:0005737;cytoplasm;3.62889071470293e-193!GO:0044422;organelle part;1.55566103176462e-149!GO:0044446;intracellular organelle part;4.67152869106765e-148!GO:0044444;cytoplasmic part;5.76531252980544e-130!GO:0032991;macromolecular complex;1.77986709432018e-101!GO:0044237;cellular metabolic process;6.76381070932698e-95!GO:0044238;primary metabolic process;6.76381070932698e-95!GO:0043170;macromolecule metabolic process;6.59062342453467e-91!GO:0005634;nucleus;3.19620677090471e-90!GO:0030529;ribonucleoprotein complex;1.60454539491608e-85!GO:0005515;protein binding;1.96759335064412e-80!GO:0044428;nuclear part;6.98689418279014e-76!GO:0003723;RNA binding;1.03516681135525e-73!GO:0043233;organelle lumen;2.72023338980291e-72!GO:0031974;membrane-enclosed lumen;2.72023338980291e-72!GO:0005739;mitochondrion;4.46849346430697e-64!GO:0019538;protein metabolic process;1.10785366083998e-55!GO:0016043;cellular component organization and biogenesis;1.83963993942118e-55!GO:0043283;biopolymer metabolic process;8.65641199802817e-54!GO:0043234;protein complex;6.33921074061309e-52!GO:0005840;ribosome;4.65773731370097e-50!GO:0044267;cellular protein metabolic process;3.44347872586631e-49!GO:0044260;cellular macromolecule metabolic process;5.30752995852832e-49!GO:0031090;organelle membrane;2.21838175018406e-47!GO:0006412;translation;6.95093452234444e-47!GO:0006396;RNA processing;1.20389743694665e-46!GO:0043228;non-membrane-bound organelle;8.05696750332035e-45!GO:0043232;intracellular non-membrane-bound organelle;8.05696750332035e-45!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.13838523761769e-44!GO:0031981;nuclear lumen;1.53185308411215e-44!GO:0003735;structural constituent of ribosome;1.38063136825131e-43!GO:0015031;protein transport;1.28105092620501e-42!GO:0044429;mitochondrial part;1.32023095456943e-42!GO:0033036;macromolecule localization;1.39938752422461e-42!GO:0031967;organelle envelope;1.8753842365738e-42!GO:0031975;envelope;4.77425549323948e-42!GO:0006996;organelle organization and biogenesis;6.22355595927861e-42!GO:0010467;gene expression;7.3030461504045e-42!GO:0005829;cytosol;1.92406798280087e-40!GO:0045184;establishment of protein localization;4.66302556912872e-39!GO:0033279;ribosomal subunit;6.57470416849784e-39!GO:0016071;mRNA metabolic process;7.69190955505439e-39!GO:0008104;protein localization;8.95841740176485e-39!GO:0065003;macromolecular complex assembly;3.39932645248423e-37!GO:0008380;RNA splicing;3.39932645248423e-37!GO:0046907;intracellular transport;4.40533385770365e-37!GO:0006259;DNA metabolic process;5.46403605920125e-36!GO:0009058;biosynthetic process;7.13994119140443e-36!GO:0000166;nucleotide binding;2.99413536690233e-35!GO:0009059;macromolecule biosynthetic process;2.0897131194299e-34!GO:0044249;cellular biosynthetic process;3.11789489728881e-34!GO:0022607;cellular component assembly;1.91987658499744e-33!GO:0006397;mRNA processing;2.69906847101322e-33!GO:0006886;intracellular protein transport;3.01316720861098e-30!GO:0007049;cell cycle;1.43180389426571e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.34764979550201e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.83000306437932e-29!GO:0005654;nucleoplasm;2.63733731890633e-28!GO:0005740;mitochondrial envelope;8.7813454207073e-28!GO:0005681;spliceosome;9.49183889411065e-27!GO:0003676;nucleic acid binding;3.76601133157652e-26!GO:0032553;ribonucleotide binding;4.70591156824493e-26!GO:0032555;purine ribonucleotide binding;4.70591156824493e-26!GO:0019866;organelle inner membrane;5.05697594110671e-26!GO:0031966;mitochondrial membrane;6.53350014789469e-26!GO:0051649;establishment of cellular localization;7.96776912067209e-26!GO:0017076;purine nucleotide binding;1.19066059122943e-25!GO:0051641;cellular localization;2.54449893072025e-25!GO:0005743;mitochondrial inner membrane;1.25066942443273e-23!GO:0044445;cytosolic part;3.06137404417932e-23!GO:0044451;nucleoplasm part;6.3406775643948e-23!GO:0016462;pyrophosphatase activity;7.45354845039259e-23!GO:0017111;nucleoside-triphosphatase activity;7.51031289079249e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.00724797731128e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;1.42306627150051e-22!GO:0022402;cell cycle process;4.25197527767406e-22!GO:0032559;adenyl ribonucleotide binding;6.00902712401769e-22!GO:0005524;ATP binding;7.50281484974139e-22!GO:0000278;mitotic cell cycle;1.49445986639152e-21!GO:0030554;adenyl nucleotide binding;2.5000865045512e-21!GO:0006119;oxidative phosphorylation;1.331041380236e-20!GO:0015935;small ribosomal subunit;2.14131883686432e-20!GO:0012505;endomembrane system;3.11320717783468e-20!GO:0015934;large ribosomal subunit;1.15558918151844e-19!GO:0005694;chromosome;1.93159517293205e-19!GO:0006457;protein folding;2.87485142647084e-19!GO:0006974;response to DNA damage stimulus;4.40870773123773e-19!GO:0022618;protein-RNA complex assembly;4.68457996411937e-19!GO:0044455;mitochondrial membrane part;8.26083644559342e-19!GO:0051276;chromosome organization and biogenesis;1.40976332360812e-18!GO:0016874;ligase activity;1.46621592984951e-18!GO:0016070;RNA metabolic process;1.78729546413417e-18!GO:0043412;biopolymer modification;2.04835587419723e-18!GO:0031980;mitochondrial lumen;2.82968918169045e-18!GO:0005759;mitochondrial matrix;2.82968918169045e-18!GO:0044427;chromosomal part;4.40038653334757e-18!GO:0044265;cellular macromolecule catabolic process;8.73833469852825e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;1.2298134537657e-17!GO:0006512;ubiquitin cycle;1.27469096145888e-17!GO:0019941;modification-dependent protein catabolic process;2.0146239505976e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.0146239505976e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.89227472385205e-17!GO:0044257;cellular protein catabolic process;4.00541791086246e-17!GO:0005730;nucleolus;4.99905917736938e-17!GO:0051301;cell division;1.09644896184276e-16!GO:0008134;transcription factor binding;1.10536029690948e-16!GO:0000087;M phase of mitotic cell cycle;1.27329953661485e-16!GO:0006464;protein modification process;1.35774432883518e-16!GO:0005746;mitochondrial respiratory chain;1.61605049991106e-16!GO:0043285;biopolymer catabolic process;1.83929935406306e-16!GO:0007067;mitosis;2.56559930867873e-16!GO:0016192;vesicle-mediated transport;5.53642008065173e-16!GO:0022403;cell cycle phase;5.53642008065173e-16!GO:0006605;protein targeting;5.64122026467846e-16!GO:0005794;Golgi apparatus;9.01596638434466e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.17809205627064e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.15013161334509e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.29386283535406e-15!GO:0009057;macromolecule catabolic process;1.93443412883018e-15!GO:0005783;endoplasmic reticulum;2.39310096999056e-15!GO:0006281;DNA repair;2.64432920985814e-15!GO:0005635;nuclear envelope;2.64432920985814e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;4.19630353776593e-15!GO:0008135;translation factor activity, nucleic acid binding;5.68401948046825e-15!GO:0050136;NADH dehydrogenase (quinone) activity;7.75678867014361e-15!GO:0003954;NADH dehydrogenase activity;7.75678867014361e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.75678867014361e-15!GO:0051186;cofactor metabolic process;1.11478190107187e-14!GO:0043687;post-translational protein modification;1.11478190107187e-14!GO:0030163;protein catabolic process;1.24337996821566e-14!GO:0048770;pigment granule;1.88251664563585e-14!GO:0042470;melanosome;1.88251664563585e-14!GO:0009719;response to endogenous stimulus;2.12394121709942e-14!GO:0006323;DNA packaging;2.31558936431731e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;2.39550946084717e-14!GO:0000375;RNA splicing, via transesterification reactions;2.39550946084717e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.39550946084717e-14!GO:0044248;cellular catabolic process;2.40556839829062e-14!GO:0048193;Golgi vesicle transport;4.66708071695344e-14!GO:0031965;nuclear membrane;5.30911794976987e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.15011749033298e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.0865253741499e-13!GO:0006260;DNA replication;1.14967048913374e-13!GO:0016604;nuclear body;1.18343905971523e-13!GO:0000279;M phase;1.23225152786533e-13!GO:0016887;ATPase activity;1.52850745833263e-13!GO:0005761;mitochondrial ribosome;1.64397737144916e-13!GO:0000313;organellar ribosome;1.64397737144916e-13!GO:0044453;nuclear membrane part;2.48529894965458e-13!GO:0051082;unfolded protein binding;2.55547024735037e-13!GO:0042623;ATPase activity, coupled;3.43286010597568e-13!GO:0042775;organelle ATP synthesis coupled electron transport;7.75079663257964e-13!GO:0042773;ATP synthesis coupled electron transport;7.75079663257964e-13!GO:0030964;NADH dehydrogenase complex (quinone);9.62230061448443e-13!GO:0045271;respiratory chain complex I;9.62230061448443e-13!GO:0005747;mitochondrial respiratory chain complex I;9.62230061448443e-13!GO:0044432;endoplasmic reticulum part;1.00534927044169e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.96981391019128e-12!GO:0006913;nucleocytoplasmic transport;4.70648341921543e-12!GO:0003743;translation initiation factor activity;7.3386042942415e-12!GO:0004386;helicase activity;8.92765039200056e-12!GO:0006413;translational initiation;1.11547452116532e-11!GO:0051169;nuclear transport;1.26516578537022e-11!GO:0000785;chromatin;1.54707342603968e-11!GO:0006333;chromatin assembly or disassembly;2.02288741543327e-11!GO:0015630;microtubule cytoskeleton;2.13405019964028e-11!GO:0008639;small protein conjugating enzyme activity;3.0829135509553e-11!GO:0051726;regulation of cell cycle;3.28964030845221e-11!GO:0006461;protein complex assembly;3.36253826021195e-11!GO:0050794;regulation of cellular process;3.43210529878368e-11!GO:0003712;transcription cofactor activity;3.49406018713945e-11!GO:0004842;ubiquitin-protein ligase activity;5.78762514175579e-11!GO:0000074;regulation of progression through cell cycle;5.78956299623058e-11!GO:0006732;coenzyme metabolic process;6.36167642106754e-11!GO:0042254;ribosome biogenesis and assembly;6.56392380723411e-11!GO:0005643;nuclear pore;1.20467601234793e-10!GO:0016607;nuclear speck;1.56449983464354e-10!GO:0012501;programmed cell death;1.63745574704067e-10!GO:0019787;small conjugating protein ligase activity;1.96042735281351e-10!GO:0006446;regulation of translational initiation;1.96366056751837e-10!GO:0006915;apoptosis;2.20707508227246e-10!GO:0065004;protein-DNA complex assembly;2.44901332541369e-10!GO:0009055;electron carrier activity;2.52419187903041e-10!GO:0005793;ER-Golgi intermediate compartment;3.75028123660047e-10!GO:0006793;phosphorus metabolic process;5.79751797764915e-10!GO:0006796;phosphate metabolic process;5.79751797764915e-10!GO:0008565;protein transporter activity;5.79779012056692e-10!GO:0008026;ATP-dependent helicase activity;7.63049914054357e-10!GO:0006163;purine nucleotide metabolic process;7.9269664775073e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.34474473060102e-09!GO:0009259;ribonucleotide metabolic process;1.49380447823161e-09!GO:0016310;phosphorylation;2.43309593917798e-09!GO:0016881;acid-amino acid ligase activity;2.43309593917798e-09!GO:0009150;purine ribonucleotide metabolic process;3.14910571884878e-09!GO:0008219;cell death;3.62065018395997e-09!GO:0016265;death;3.62065018395997e-09!GO:0017038;protein import;3.70179174661376e-09!GO:0006403;RNA localization;3.79760028868966e-09!GO:0050657;nucleic acid transport;4.01597470743968e-09!GO:0051236;establishment of RNA localization;4.01597470743968e-09!GO:0050658;RNA transport;4.01597470743968e-09!GO:0046930;pore complex;4.54561318891998e-09!GO:0030532;small nuclear ribonucleoprotein complex;4.6953140643931e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.07441869118347e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.34504112194646e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.83890071693658e-09!GO:0005813;centrosome;1.12260785356399e-08!GO:0006164;purine nucleotide biosynthetic process;1.23641612317308e-08!GO:0005789;endoplasmic reticulum membrane;1.45291082631239e-08!GO:0065002;intracellular protein transport across a membrane;1.5292641522925e-08!GO:0006399;tRNA metabolic process;1.61484621242007e-08!GO:0009056;catabolic process;1.84000064768641e-08!GO:0016568;chromatin modification;1.92165732530446e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.53748735405391e-08!GO:0003697;single-stranded DNA binding;3.03637083723996e-08!GO:0006334;nucleosome assembly;3.03637083723996e-08!GO:0009060;aerobic respiration;3.23344992042506e-08!GO:0009141;nucleoside triphosphate metabolic process;3.23984299617492e-08!GO:0016740;transferase activity;3.38275202768128e-08!GO:0005819;spindle;3.51381916217246e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.89239291045911e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.89239291045911e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.2323088910273e-08!GO:0004812;aminoacyl-tRNA ligase activity;4.2323088910273e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.2323088910273e-08!GO:0005815;microtubule organizing center;4.51011738151113e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.73789024578755e-08!GO:0009260;ribonucleotide biosynthetic process;4.93775403749102e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.19737391457776e-08!GO:0031497;chromatin assembly;5.63411064445018e-08!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.39225963715151e-08!GO:0048523;negative regulation of cellular process;6.68606218323109e-08!GO:0006366;transcription from RNA polymerase II promoter;7.04792035346403e-08!GO:0032446;protein modification by small protein conjugation;7.68695845407439e-08!GO:0043038;amino acid activation;8.85518480974334e-08!GO:0006418;tRNA aminoacylation for protein translation;8.85518480974334e-08!GO:0043039;tRNA aminoacylation;8.85518480974334e-08!GO:0051188;cofactor biosynthetic process;1.12613122734758e-07!GO:0007010;cytoskeleton organization and biogenesis;1.19411374307274e-07!GO:0051028;mRNA transport;1.5054522833713e-07!GO:0003924;GTPase activity;1.83950796307031e-07!GO:0016567;protein ubiquitination;1.90557142109179e-07!GO:0000245;spliceosome assembly;1.98049965185618e-07!GO:0046034;ATP metabolic process;2.09402967137828e-07!GO:0045333;cellular respiration;2.29626814244563e-07!GO:0009117;nucleotide metabolic process;2.44545629147783e-07!GO:0015986;ATP synthesis coupled proton transport;2.53368887569201e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.53368887569201e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.57608206965678e-07!GO:0000775;chromosome, pericentric region;2.98767793718893e-07!GO:0050789;regulation of biological process;3.01377284462272e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.01461578468616e-07!GO:0043566;structure-specific DNA binding;3.04555659916561e-07!GO:0019829;cation-transporting ATPase activity;3.29579726172924e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.35405541193847e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.35405541193847e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.57694220629932e-07!GO:0051170;nuclear import;3.80795510453202e-07!GO:0006364;rRNA processing;3.82703547662953e-07!GO:0019899;enzyme binding;4.10276736837495e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.17687893848091e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.17687893848091e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.27303710362423e-07!GO:0005525;GTP binding;5.40556518828673e-07!GO:0000151;ubiquitin ligase complex;5.90889363327334e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.26408770632799e-07!GO:0006099;tricarboxylic acid cycle;8.71256978929605e-07!GO:0046356;acetyl-CoA catabolic process;8.71256978929605e-07!GO:0030036;actin cytoskeleton organization and biogenesis;8.71256978929605e-07!GO:0006606;protein import into nucleus;1.0753510594665e-06!GO:0005768;endosome;1.26053689766792e-06!GO:0016072;rRNA metabolic process;1.30479518747956e-06!GO:0044431;Golgi apparatus part;1.39798692775302e-06!GO:0016779;nucleotidyltransferase activity;1.43838694697006e-06!GO:0051246;regulation of protein metabolic process;1.61049074605863e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.7562041867807e-06!GO:0016787;hydrolase activity;1.7840603145059e-06!GO:0005788;endoplasmic reticulum lumen;1.88701243350082e-06!GO:0048475;coated membrane;1.91737221416679e-06!GO:0030117;membrane coat;1.91737221416679e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.97626646312525e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.00548464908724e-06!GO:0031988;membrane-bound vesicle;2.02741520238842e-06!GO:0031252;leading edge;2.11961284142265e-06!GO:0048519;negative regulation of biological process;2.24583374116504e-06!GO:0030120;vesicle coat;2.25957139360836e-06!GO:0030662;coated vesicle membrane;2.25957139360836e-06!GO:0006754;ATP biosynthetic process;2.63381554842194e-06!GO:0006753;nucleoside phosphate metabolic process;2.63381554842194e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.70857373736121e-06!GO:0006084;acetyl-CoA metabolic process;2.74714632807825e-06!GO:0030029;actin filament-based process;2.78515787561594e-06!GO:0045259;proton-transporting ATP synthase complex;2.79292198157468e-06!GO:0007051;spindle organization and biogenesis;3.01427399061321e-06!GO:0006916;anti-apoptosis;3.09901761573241e-06!GO:0051187;cofactor catabolic process;4.08238171460404e-06!GO:0042981;regulation of apoptosis;4.83023816915628e-06!GO:0009108;coenzyme biosynthetic process;5.17074066556586e-06!GO:0043067;regulation of programmed cell death;5.21708247880977e-06!GO:0007005;mitochondrion organization and biogenesis;5.21951939059936e-06!GO:0045786;negative regulation of progression through cell cycle;5.27293734368985e-06!GO:0006261;DNA-dependent DNA replication;5.96214398054176e-06!GO:0003714;transcription corepressor activity;6.12250274073188e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.40049456307812e-06!GO:0003724;RNA helicase activity;6.64346832311491e-06!GO:0043623;cellular protein complex assembly;6.91628841919119e-06!GO:0031982;vesicle;7.06826186550615e-06!GO:0043069;negative regulation of programmed cell death;7.08877718901469e-06!GO:0032561;guanyl ribonucleotide binding;7.23485170809938e-06!GO:0019001;guanyl nucleotide binding;7.23485170809938e-06!GO:0005667;transcription factor complex;7.35015352415996e-06!GO:0005769;early endosome;8.4602257876097e-06!GO:0009109;coenzyme catabolic process;8.62995268158738e-06!GO:0051329;interphase of mitotic cell cycle;8.80518577794831e-06!GO:0043066;negative regulation of apoptosis;9.65165736354555e-06!GO:0031410;cytoplasmic vesicle;9.89640840888016e-06!GO:0008092;cytoskeletal protein binding;9.98319293240343e-06!GO:0008047;enzyme activator activity;1.07504763365176e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.07504763365176e-05!GO:0004298;threonine endopeptidase activity;1.38246594555501e-05!GO:0016564;transcription repressor activity;1.77587709428378e-05!GO:0005762;mitochondrial large ribosomal subunit;2.00385968729735e-05!GO:0000315;organellar large ribosomal subunit;2.00385968729735e-05!GO:0006752;group transfer coenzyme metabolic process;2.08230220974398e-05!GO:0000139;Golgi membrane;2.1896027626334e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.31807933449427e-05!GO:0006613;cotranslational protein targeting to membrane;2.63732542131032e-05!GO:0051325;interphase;2.7162594566669e-05!GO:0005096;GTPase activator activity;2.98170641683969e-05!GO:0003713;transcription coactivator activity;3.06364539439108e-05!GO:0007264;small GTPase mediated signal transduction;3.37910200665754e-05!GO:0008094;DNA-dependent ATPase activity;3.41338474817917e-05!GO:0016859;cis-trans isomerase activity;3.42239867149507e-05!GO:0016853;isomerase activity;3.97435647727943e-05!GO:0000075;cell cycle checkpoint;3.99827728681519e-05!GO:0044440;endosomal part;4.28209307039823e-05!GO:0010008;endosome membrane;4.28209307039823e-05!GO:0019222;regulation of metabolic process;4.45036812234941e-05!GO:0045454;cell redox homeostasis;5.17087830149092e-05!GO:0007243;protein kinase cascade;5.53793338705218e-05!GO:0016044;membrane organization and biogenesis;5.7195650602248e-05!GO:0051427;hormone receptor binding;5.90131249186364e-05!GO:0048471;perinuclear region of cytoplasm;6.22701031828374e-05!GO:0016563;transcription activator activity;6.59984137105357e-05!GO:0016491;oxidoreductase activity;6.88721970985606e-05!GO:0005770;late endosome;0.000104194001536481!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000104588771169365!GO:0030867;rough endoplasmic reticulum membrane;0.000106039680621179!GO:0005874;microtubule;0.000130093413017688!GO:0035257;nuclear hormone receptor binding;0.000130093413017688!GO:0005773;vacuole;0.000147168852219511!GO:0031968;organelle outer membrane;0.000157287501325111!GO:0000776;kinetochore;0.000163903240769804!GO:0003899;DNA-directed RNA polymerase activity;0.000166978839171155!GO:0005798;Golgi-associated vesicle;0.000173499027903246!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00017417263031852!GO:0019843;rRNA binding;0.000174281495651442!GO:0004674;protein serine/threonine kinase activity;0.00018324576288298!GO:0043021;ribonucleoprotein binding;0.000183790611794282!GO:0008186;RNA-dependent ATPase activity;0.00018922255357008!GO:0000314;organellar small ribosomal subunit;0.000206387168368311!GO:0005763;mitochondrial small ribosomal subunit;0.000206387168368311!GO:0019867;outer membrane;0.000206387168368311!GO:0000786;nucleosome;0.000229848253574687!GO:0005657;replication fork;0.00025440961473119!GO:0003682;chromatin binding;0.000263454750246873!GO:0030695;GTPase regulator activity;0.00027065795730605!GO:0009165;nucleotide biosynthetic process;0.000274728798734512!GO:0008654;phospholipid biosynthetic process;0.000278237780219024!GO:0016126;sterol biosynthetic process;0.000303372035001585!GO:0007059;chromosome segregation;0.000310018637773083!GO:0005048;signal sequence binding;0.000337134989403271!GO:0031072;heat shock protein binding;0.000369201559096235!GO:0051168;nuclear export;0.000369201559096235!GO:0005885;Arp2/3 protein complex;0.000383917904110262!GO:0042802;identical protein binding;0.000384068699062246!GO:0005741;mitochondrial outer membrane;0.00039670696247911!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000411538795813912!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000411538795813912!GO:0065007;biological regulation;0.000415430369976023!GO:0005083;small GTPase regulator activity;0.000456557586161198!GO:0016363;nuclear matrix;0.000458487465135437!GO:0006612;protein targeting to membrane;0.000524060970578364!GO:0006310;DNA recombination;0.0005360754126759!GO:0000059;protein import into nucleus, docking;0.000549144090599387!GO:0005905;coated pit;0.000567197350783654!GO:0015980;energy derivation by oxidation of organic compounds;0.00057730671079072!GO:0004004;ATP-dependent RNA helicase activity;0.000580054177174815!GO:0003729;mRNA binding;0.000631421569875896!GO:0000323;lytic vacuole;0.000638922617438226!GO:0005764;lysosome;0.000638922617438226!GO:0033116;ER-Golgi intermediate compartment membrane;0.000654150837393814!GO:0006383;transcription from RNA polymerase III promoter;0.000658454392278282!GO:0051087;chaperone binding;0.00069024901056044!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000755643273390971!GO:0006302;double-strand break repair;0.000758527791066652!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000775316446400796!GO:0007265;Ras protein signal transduction;0.000781958705760337!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000813220428753913!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000894008481173512!GO:0016301;kinase activity;0.000897332056425842!GO:0043681;protein import into mitochondrion;0.000940972685155802!GO:0003684;damaged DNA binding;0.000943515771603156!GO:0006402;mRNA catabolic process;0.000954689618811315!GO:0006414;translational elongation;0.000997496787344567!GO:0051920;peroxiredoxin activity;0.00103088391653905!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00108753378520832!GO:0003690;double-stranded DNA binding;0.00109093014668098!GO:0006091;generation of precursor metabolites and energy;0.00110791510029293!GO:0007017;microtubule-based process;0.00116562884745989!GO:0007052;mitotic spindle organization and biogenesis;0.00116953052402256!GO:0007093;mitotic cell cycle checkpoint;0.00128703088452391!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00129053328362435!GO:0006695;cholesterol biosynthetic process;0.00129381204393517!GO:0030027;lamellipodium;0.00132611619120477!GO:0031324;negative regulation of cellular metabolic process;0.0013826997306747!GO:0008139;nuclear localization sequence binding;0.00145625056930143!GO:0051252;regulation of RNA metabolic process;0.00148246350560194!GO:0045045;secretory pathway;0.00166108306191657!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00168714288401871!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00168714288401871!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00168714288401871!GO:0003678;DNA helicase activity;0.00169755017696917!GO:0005637;nuclear inner membrane;0.00180758164683568!GO:0006950;response to stress;0.00186865302542245!GO:0005684;U2-dependent spliceosome;0.00191417966275633!GO:0032508;DNA duplex unwinding;0.00203866270529702!GO:0032392;DNA geometric change;0.00203866270529702!GO:0008250;oligosaccharyl transferase complex;0.00210731262085334!GO:0065009;regulation of a molecular function;0.00212869930724761!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00215328994368761!GO:0015399;primary active transmembrane transporter activity;0.00215328994368761!GO:0015631;tubulin binding;0.00218025204349969!GO:0003779;actin binding;0.00228374081524512!GO:0006268;DNA unwinding during replication;0.00239000001489735!GO:0035258;steroid hormone receptor binding;0.0025951945305925!GO:0048522;positive regulation of cellular process;0.00260146821123609!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00271518230527343!GO:0006401;RNA catabolic process;0.00275468529444026!GO:0048500;signal recognition particle;0.00299752921987006!GO:0006897;endocytosis;0.00299752921987006!GO:0010324;membrane invagination;0.00299752921987006!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00309685849808618!GO:0000922;spindle pole;0.00313639607624603!GO:0006338;chromatin remodeling;0.00314888756620643!GO:0031323;regulation of cellular metabolic process;0.00319170715676945!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00325497170126818!GO:0030880;RNA polymerase complex;0.00329214250813588!GO:0001726;ruffle;0.00331912389196916!GO:0051052;regulation of DNA metabolic process;0.00348365239432606!GO:0051101;regulation of DNA binding;0.00348365239432606!GO:0044452;nucleolar part;0.00350399439693853!GO:0004576;oligosaccharyl transferase activity;0.0036895672274575!GO:0005791;rough endoplasmic reticulum;0.00370979803222198!GO:0006626;protein targeting to mitochondrion;0.00370979803222198!GO:0005856;cytoskeleton;0.00372278180001088!GO:0017166;vinculin binding;0.003737206596348!GO:0000082;G1/S transition of mitotic cell cycle;0.00374618637602742!GO:0009892;negative regulation of metabolic process;0.00374618637602742!GO:0051789;response to protein stimulus;0.00374618637602742!GO:0006986;response to unfolded protein;0.00374618637602742!GO:0006892;post-Golgi vesicle-mediated transport;0.00389776780994236!GO:0007088;regulation of mitosis;0.00390262857541949!GO:0006891;intra-Golgi vesicle-mediated transport;0.00412630679708089!GO:0030658;transport vesicle membrane;0.00431273117747322!GO:0006352;transcription initiation;0.00436520399423294!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00448067775112929!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00448067775112929!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00457482917477319!GO:0006350;transcription;0.00465686522561571!GO:0006284;base-excision repair;0.00472100564377702!GO:0008632;apoptotic program;0.00489028629402607!GO:0007242;intracellular signaling cascade;0.00489218608134979!GO:0030132;clathrin coat of coated pit;0.00501858838689343!GO:0018196;peptidyl-asparagine modification;0.00518348811858028!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00518348811858028!GO:0007006;mitochondrial membrane organization and biogenesis;0.00534095315181472!GO:0030118;clathrin coat;0.00542288506441279!GO:0000910;cytokinesis;0.00559034886406007!GO:0030663;COPI coated vesicle membrane;0.00559034886406007!GO:0030126;COPI vesicle coat;0.00559034886406007!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.00573560903510236!GO:0005099;Ras GTPase activator activity;0.00578891094204745!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00579489305897382!GO:0008361;regulation of cell size;0.00584859927533007!GO:0016197;endosome transport;0.00602508234062535!GO:0043488;regulation of mRNA stability;0.00602508234062535!GO:0043487;regulation of RNA stability;0.00602508234062535!GO:0006839;mitochondrial transport;0.0060786480111433!GO:0030133;transport vesicle;0.00623525808976126!GO:0030041;actin filament polymerization;0.00630679522414082!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00636673796377395!GO:0005876;spindle microtubule;0.00637529848206339!GO:0030521;androgen receptor signaling pathway;0.00642466437175355!GO:0032984;macromolecular complex disassembly;0.00645829778964947!GO:0008234;cysteine-type peptidase activity;0.00675117513872182!GO:0030134;ER to Golgi transport vesicle;0.00692987056203414!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00695454014503445!GO:0016049;cell growth;0.00695454014503445!GO:0007266;Rho protein signal transduction;0.00704301500268672!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00704301500268672!GO:0000428;DNA-directed RNA polymerase complex;0.00704301500268672!GO:0016584;nucleosome positioning;0.00710485033170513!GO:0006818;hydrogen transport;0.00715773165644712!GO:0043492;ATPase activity, coupled to movement of substances;0.00719525047124828!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00723903022794005!GO:0008312;7S RNA binding;0.00728363207961616!GO:0015992;proton transport;0.00728677540911075!GO:0019904;protein domain specific binding;0.00732744583876761!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00736429201253699!GO:0015002;heme-copper terminal oxidase activity;0.00736429201253699!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00736429201253699!GO:0004129;cytochrome-c oxidase activity;0.00736429201253699!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00743937835746559!GO:0022406;membrane docking;0.00755415908636274!GO:0048278;vesicle docking;0.00755415908636274!GO:0006289;nucleotide-excision repair;0.00761290935440398!GO:0048487;beta-tubulin binding;0.00777499570267059!GO:0031625;ubiquitin protein ligase binding;0.00823292428776987!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00829760260776111!GO:0042770;DNA damage response, signal transduction;0.00839497269085293!GO:0030127;COPII vesicle coat;0.00841615448829419!GO:0012507;ER to Golgi transport vesicle membrane;0.00841615448829419!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00846718915156514!GO:0045047;protein targeting to ER;0.00846718915156514!GO:0015036;disulfide oxidoreductase activity;0.00850204180855636!GO:0046483;heterocycle metabolic process;0.00861667204025095!GO:0016481;negative regulation of transcription;0.00864225666674739!GO:0008022;protein C-terminus binding;0.0088054180479851!GO:0009967;positive regulation of signal transduction;0.00904151440697698!GO:0000049;tRNA binding;0.00906508136360743!GO:0051287;NAD binding;0.00907349926978268!GO:0050662;coenzyme binding;0.00947706291316611!GO:0000792;heterochromatin;0.00975046766738044!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00982775837701497!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00982939990060473!GO:0030659;cytoplasmic vesicle membrane;0.00987550355031762!GO:0043624;cellular protein complex disassembly;0.00995912933034314!GO:0043241;protein complex disassembly;0.0102798264240971!GO:0031901;early endosome membrane;0.0103384558098292!GO:0016272;prefoldin complex;0.0105705775535801!GO:0001558;regulation of cell growth;0.0108112593193592!GO:0003746;translation elongation factor activity;0.0109344783319837!GO:0006595;polyamine metabolic process;0.0110354641218174!GO:0030660;Golgi-associated vesicle membrane;0.011137491871273!GO:0006611;protein export from nucleus;0.0116195309807522!GO:0009116;nucleoside metabolic process;0.0117439987707345!GO:0030137;COPI-coated vesicle;0.0118043467351169!GO:0005862;muscle thin filament tropomyosin;0.0118651160004422!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0118960964149041!GO:0003711;transcription elongation regulator activity;0.0119093257320721!GO:0006405;RNA export from nucleus;0.0121748616836665!GO:0016741;transferase activity, transferring one-carbon groups;0.0122105889932216!GO:0006376;mRNA splice site selection;0.012708312076119!GO:0000389;nuclear mRNA 3'-splice site recognition;0.012708312076119!GO:0006509;membrane protein ectodomain proteolysis;0.0128375934760427!GO:0033619;membrane protein proteolysis;0.0128375934760427!GO:0004177;aminopeptidase activity;0.0128390973894278!GO:0008168;methyltransferase activity;0.0128714851276689!GO:0008154;actin polymerization and/or depolymerization;0.0129536045524637!GO:0008180;signalosome;0.013284128692915!GO:0006740;NADPH regeneration;0.0133597746812099!GO:0006098;pentose-phosphate shunt;0.0133597746812099!GO:0030496;midbody;0.0136500309681977!GO:0043284;biopolymer biosynthetic process;0.0136500309681977!GO:0007050;cell cycle arrest;0.0136989285871245!GO:0051540;metal cluster binding;0.0138736375903739!GO:0051536;iron-sulfur cluster binding;0.0138736375903739!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0140428309048065!GO:0030032;lamellipodium biogenesis;0.0140636995304497!GO:0008033;tRNA processing;0.0141962218158853!GO:0022890;inorganic cation transmembrane transporter activity;0.014541997621971!GO:0005669;transcription factor TFIID complex;0.0145798096734444!GO:0006778;porphyrin metabolic process;0.0145798096734444!GO:0033013;tetrapyrrole metabolic process;0.0145798096734444!GO:0006904;vesicle docking during exocytosis;0.0147677858621789!GO:0005832;chaperonin-containing T-complex;0.0155828772598989!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0155828772598989!GO:0005938;cell cortex;0.0158955972578659!GO:0016251;general RNA polymerase II transcription factor activity;0.0159410667558698!GO:0000209;protein polyubiquitination;0.015956396617339!GO:0008629;induction of apoptosis by intracellular signals;0.015956396617339!GO:0032940;secretion by cell;0.016110476340476!GO:0051098;regulation of binding;0.0169189036389284!GO:0007040;lysosome organization and biogenesis;0.0169189036389284!GO:0045941;positive regulation of transcription;0.0169273969208895!GO:0043414;biopolymer methylation;0.0171003819354765!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0171180480292413!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0171451110519096!GO:0005774;vacuolar membrane;0.0171451110519096!GO:0043022;ribosome binding;0.018170013341667!GO:0030518;steroid hormone receptor signaling pathway;0.0183279401646534!GO:0046474;glycerophospholipid biosynthetic process;0.018596681638215!GO:0030119;AP-type membrane coat adaptor complex;0.0191751500847219!GO:0044262;cellular carbohydrate metabolic process;0.0198097247970425!GO:0051128;regulation of cellular component organization and biogenesis;0.0198232480107681!GO:0022415;viral reproductive process;0.0198310908427731!GO:0000339;RNA cap binding;0.0199944667929559!GO:0003756;protein disulfide isomerase activity;0.0200526621121031!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0200526621121031!GO:0006468;protein amino acid phosphorylation;0.0202969361699193!GO:0007346;regulation of progression through mitotic cell cycle;0.0205202567294731!GO:0019783;small conjugating protein-specific protease activity;0.0205439393933205!GO:0042393;histone binding;0.0208019017428547!GO:0004003;ATP-dependent DNA helicase activity;0.020842948922455!GO:0016408;C-acyltransferase activity;0.0212897661283731!GO:0051656;establishment of organelle localization;0.0215617898889964!GO:0010468;regulation of gene expression;0.0216902885901355!GO:0005869;dynactin complex;0.0217807462719439!GO:0032200;telomere organization and biogenesis;0.0217807462719439!GO:0000723;telomere maintenance;0.0217807462719439!GO:0050681;androgen receptor binding;0.0217997802575649!GO:0030833;regulation of actin filament polymerization;0.0217997802575649!GO:0005100;Rho GTPase activator activity;0.0220531900065797!GO:0004527;exonuclease activity;0.0223752998905641!GO:0009081;branched chain family amino acid metabolic process;0.0224180282762405!GO:0044433;cytoplasmic vesicle part;0.0224460216805416!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0224466626701351!GO:0006607;NLS-bearing substrate import into nucleus;0.0224466626701351!GO:0045893;positive regulation of transcription, DNA-dependent;0.0228579821501419!GO:0046467;membrane lipid biosynthetic process;0.0230217422465949!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0231013279394477!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.023312439550895!GO:0004518;nuclease activity;0.0238494801990106!GO:0009112;nucleobase metabolic process;0.0243695203938579!GO:0004843;ubiquitin-specific protease activity;0.0248489912355431!GO:0019206;nucleoside kinase activity;0.0249737577906149!GO:0051539;4 iron, 4 sulfur cluster binding;0.0260438197000394!GO:0030131;clathrin adaptor complex;0.0270575601960058!GO:0006979;response to oxidative stress;0.0274919433921534!GO:0007021;tubulin folding;0.0279504864666647!GO:0046822;regulation of nucleocytoplasmic transport;0.0279726695989123!GO:0008610;lipid biosynthetic process;0.0285074892330015!GO:0035035;histone acetyltransferase binding;0.0287397553429479!GO:0000287;magnesium ion binding;0.0289320741638847!GO:0000725;recombinational repair;0.0294226683974605!GO:0000724;double-strand break repair via homologous recombination;0.0294226683974605!GO:0031570;DNA integrity checkpoint;0.0294226683974605!GO:0042168;heme metabolic process;0.0295625436586153!GO:0022411;cellular component disassembly;0.0300941064621512!GO:0046489;phosphoinositide biosynthetic process;0.0306522306319679!GO:0031902;late endosome membrane;0.0309356946912375!GO:0000819;sister chromatid segregation;0.0310737286409299!GO:0031371;ubiquitin conjugating enzyme complex;0.0311576576830715!GO:0000118;histone deacetylase complex;0.0314696081085729!GO:0050790;regulation of catalytic activity;0.0314696081085729!GO:0047485;protein N-terminus binding;0.0314909556676189!GO:0032259;methylation;0.0319051381408325!GO:0000070;mitotic sister chromatid segregation;0.0319319817821351!GO:0000096;sulfur amino acid metabolic process;0.0319319817821351!GO:0008276;protein methyltransferase activity;0.0340312481021318!GO:0005765;lysosomal membrane;0.0344371216507696!GO:0008287;protein serine/threonine phosphatase complex;0.0348656315046445!GO:0005784;translocon complex;0.0348706122726482!GO:0005875;microtubule associated complex;0.035312038937559!GO:0006779;porphyrin biosynthetic process;0.0357800572633857!GO:0033014;tetrapyrrole biosynthetic process;0.0357800572633857!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.035909869898172!GO:0035267;NuA4 histone acetyltransferase complex;0.0364611129637842!GO:0044437;vacuolar part;0.0366035589649222!GO:0030911;TPR domain binding;0.0368011155961186!GO:0012506;vesicle membrane;0.0370255813645489!GO:0031529;ruffle organization and biogenesis;0.037339385712114!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0374322913211311!GO:0006275;regulation of DNA replication;0.0378939149025746!GO:0048660;regulation of smooth muscle cell proliferation;0.0381493002391627!GO:0006739;NADP metabolic process;0.0385503467454059!GO:0008536;Ran GTPase binding;0.0385901581455428!GO:0004221;ubiquitin thiolesterase activity;0.0389945431942793!GO:0007033;vacuole organization and biogenesis;0.0395855627531546!GO:0004448;isocitrate dehydrogenase activity;0.0395855627531546!GO:0043189;H4/H2A histone acetyltransferase complex;0.0407222608177058!GO:0006270;DNA replication initiation;0.0410423557735257!GO:0050178;phenylpyruvate tautomerase activity;0.0415932660322646!GO:0043281;regulation of caspase activity;0.0416540577791419!GO:0005758;mitochondrial intermembrane space;0.0416586630858781!GO:0030031;cell projection biogenesis;0.0416827325135714!GO:0006220;pyrimidine nucleotide metabolic process;0.0424335130020276!GO:0008538;proteasome activator activity;0.0427071823218656!GO:0000781;chromosome, telomeric region;0.0427599546721626!GO:0004672;protein kinase activity;0.0431341639255886!GO:0004680;casein kinase activity;0.0434676151823806!GO:0005652;nuclear lamina;0.0434676151823806!GO:0008017;microtubule binding;0.0435120088444335!GO:0008097;5S rRNA binding;0.0437380260624795!GO:0009966;regulation of signal transduction;0.0437380260624795!GO:0006144;purine base metabolic process;0.0440473058270265!GO:0030384;phosphoinositide metabolic process;0.0440473058270265!GO:0009303;rRNA transcription;0.0441267250337072!GO:0006417;regulation of translation;0.0442058249112372!GO:0033130;acetylcholine receptor binding;0.044348258461013!GO:0046128;purine ribonucleoside metabolic process;0.044348258461013!GO:0042278;purine nucleoside metabolic process;0.044348258461013!GO:0046966;thyroid hormone receptor binding;0.0453426242399519!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0454814928143677!GO:0010257;NADH dehydrogenase complex assembly;0.0454814928143677!GO:0033108;mitochondrial respiratory chain complex assembly;0.0454814928143677!GO:0016790;thiolester hydrolase activity;0.0458810851967834!GO:0032153;cell division site;0.0463992055919633!GO:0032155;cell division site part;0.0463992055919633!GO:0000152;nuclear ubiquitin ligase complex;0.0467576034602884!GO:0051336;regulation of hydrolase activity;0.04679739793236!GO:0045879;negative regulation of smoothened signaling pathway;0.046805950551674!GO:0016605;PML body;0.0474324867126462!GO:0017134;fibroblast growth factor binding;0.0479657738625268!GO:0016585;chromatin remodeling complex;0.0486231355298963!GO:0016615;malate dehydrogenase activity;0.0487233482342975!GO:0000123;histone acetyltransferase complex;0.049444534601057!GO:0030125;clathrin vesicle coat;0.049444534601057!GO:0030665;clathrin coated vesicle membrane;0.049444534601057 | |||
|sample_id=11324 | |sample_id=11324 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=umbilical vein | |sample_tissue=umbilical vein | ||
|top_motifs=IKZF2:1.62121988416;SOX{8,9,10}:1.52830448088;PAX1,9:1.52790598131;RXR{A,B,G}:1.52271014104;HBP1_HMGB_SSRP1_UBTF:1.22325440336;NFATC1..3:1.15441467686;PAX6:1.13497565038;ALX1:1.06767055063;ADNP_IRX_SIX_ZHX:1.0630229906;TFDP1:0.990712677111;ZFP161:0.958735492842;TLX1..3_NFIC{dimer}:0.880721483902;SOX5:0.844967200216;TFAP2{A,C}:0.831591933974;NFY{A,B,C}:0.819629594922;E2F1..5:0.812414490301;GATA6:0.784549822323;AR:0.743297687011;SOX2:0.712984271448;POU3F1..4:0.705758784046;ELF1,2,4:0.640430526981;SOX17:0.606052313999;PBX1:0.600324350256;ZNF143:0.585266203846;RBPJ:0.578389315958;HIC1:0.56864225327;ONECUT1,2:0.550274580474;XCPE1{core}:0.528526558049;TFAP4:0.522180265916;MYB:0.51285478711;CDC5L:0.512108648923;GFI1:0.501720769071;NRF1:0.501261606351;ETS1,2:0.49127812438;PITX1..3:0.475277642233;GFI1B:0.444817667453;FOXD3:0.429483515292;STAT1,3:0.416191446909;EGR1..3:0.409534719974;SP1:0.406777601905;FOXQ1:0.399598526326;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.391832813418;POU1F1:0.385224403494;YY1:0.357272791332;SPIB:0.33976109295;IKZF1:0.336166218769;FOX{I1,J2}:0.330613860889;TFAP2B:0.317617678398;RORA:0.314519298865;LEF1_TCF7_TCF7L1,2:0.276795356117;TEAD1:0.27029761916;HOXA9_MEIS1:0.259787206104;CUX2:0.249619540143;GATA4:0.24280266312;MED-1{core}:0.241179308322;FOXA2:0.237383248458;ARID5B:0.228656675536;STAT5{A,B}:0.219505991751;NANOG:0.200165002554;EN1,2:0.196698910232;PAX8:0.176553953615;NR5A1,2:0.1722394811;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.15544338056;ATF6:0.143158989977;MZF1:0.130495559283;HNF4A_NR2F1,2:0.118500784074;MTE{core}:0.0954309746299;NANOG{mouse}:0.0943741310096;PRDM1:0.0863130183431;BREu{core}:0.0819724535387;GTF2I:0.077178774411;MYOD1:0.0727826669551;ZNF423:0.0701031535059;GZF1:0.0635391846707;FOXP1:0.0587178189524;HOX{A5,B5}:0.0571464280033;NKX2-3_NKX2-5:0.0472248392264;SREBF1,2:0.0395088821645;MAZ:0.0328676770629;SPI1:0.0263465397913;REST:0.0218462597034;FOXN1:0.00456351966674;POU5F1:-0.00912624617478;LHX3,4:-0.0118241257972;HES1:-0.0164431135265;PATZ1:-0.0241707948346;ZNF238:-0.0246591514321;PRRX1,2:-0.0309950487827;BACH2:-0.0321950380793;TEF:-0.0460266588816;TGIF1:-0.0506935692788;EBF1:-0.0527096915067;DMAP1_NCOR{1,2}_SMARC:-0.0598222316545;ZBTB6:-0.0641239041718;GTF2A1,2:-0.066489588884;PAX5:-0.0715000950006;TAL1_TCF{3,4,12}:-0.0781011065555;PAX3,7:-0.0796337418953;ZNF148:-0.0812661495822;NFE2:-0.081400175245;TP53:-0.0980664688448;T:-0.105781012683;bHLH_family:-0.112659770955;MEF2{A,B,C,D}:-0.121689371868;POU6F1:-0.121897510723;FOS_FOS{B,L1}_JUN{B,D}:-0.127868188891;ZBTB16:-0.141130348918;STAT2,4,6:-0.148494542356;CDX1,2,4:-0.150317688664;CREB1:-0.152503304046;FOSL2:-0.163163923095;FOXO1,3,4:-0.163738217666;NFE2L2:-0.181931960484;EVI1:-0.19096915915;SMAD1..7,9:-0.194731476179;BPTF:-0.20023686057;POU2F1..3:-0.215136536229;ZIC1..3:-0.216280346901;HNF1A:-0.221818183104;IRF1,2:-0.236680423063;HMGA1,2:-0.237936020585;PPARG:-0.246056651233;GCM1,2:-0.262903397564;NR3C1:-0.26846027921;AIRE:-0.269693602457;XBP1:-0.271156141499;PDX1:-0.280196544511;FOX{D1,D2}:-0.286553804923;NHLH1,2:-0.2956823903;AHR_ARNT_ARNT2:-0.305844053245;NFIX:-0.308853313431;LMO2:-0.328430524198;UFEwm:-0.337377410597;CRX:-0.346150018162;HOX{A6,A7,B6,B7}:-0.354533105197;KLF4:-0.359994708538;GLI1..3:-0.372448641905;MYBL2:-0.375794045353;NKX2-2,8:-0.39483032987;NFKB1_REL_RELA:-0.401010836306;PAX2:-0.401184285137;MTF1:-0.408187754555;OCT4_SOX2{dimer}:-0.445431481179;NR1H4:-0.447253134325;SPZ1:-0.448415351264;FOX{F1,F2,J1}:-0.453486369952;RFX1:-0.484591063544;FOXM1:-0.489600821126;IRF7:-0.489976435926;FOXL1:-0.492243079717;ZNF384:-0.504804321153;SRF:-0.518102123214;MYFfamily:-0.521455563236;ATF2:-0.544343437543;HLF:-0.565640145316;SNAI1..3:-0.602304930241;ESRRA:-0.603312011098;PAX4:-0.609809989613;ATF4:-0.627727382831;ELK1,4_GABP{A,B1}:-0.664028499185;RUNX1..3:-0.679563908834;RXRA_VDR{dimer}:-0.682551868057;NKX3-1:-0.682975028241;HAND1,2:-0.691093846949;TOPORS:-0.691826136957;CEBPA,B_DDIT3:-0.69901408669;RREB1:-0.710556257869;DBP:-0.766886459482;NKX3-2:-0.773596022208;HOX{A4,D4}:-0.779739692658;NKX6-1,2:-0.795942736408;TBP:-0.825987970148;ATF5_CREB3:-0.860477162819;ALX4:-0.861534897138;RFX2..5_RFXANK_RFXAP:-0.870628197901;VSX1,2:-0.891942652052;FOXP3:-0.898227883187;ZEB1:-0.908146092826;TBX4,5:-0.916890764359;JUN:-0.93527710696;EP300:-0.973041528494;NFIL3:-0.981775910225;TLX2:-0.985138694406;TFCP2:-1.01299409309;HSF1,2:-1.0205857386;NKX2-1,4:-1.03547262318;NFE2L1:-1.05060566142;ESR1:-1.05710869203;MAFB:-1.11927030891;NR6A1:-1.14376249855;HIF1A:-1.16704845573;HMX1:-1.28966714162 | |top_motifs=IKZF2:1.62121988416;SOX{8,9,10}:1.52830448088;PAX1,9:1.52790598131;RXR{A,B,G}:1.52271014104;HBP1_HMGB_SSRP1_UBTF:1.22325440336;NFATC1..3:1.15441467686;PAX6:1.13497565038;ALX1:1.06767055063;ADNP_IRX_SIX_ZHX:1.0630229906;TFDP1:0.990712677111;ZFP161:0.958735492842;TLX1..3_NFIC{dimer}:0.880721483902;SOX5:0.844967200216;TFAP2{A,C}:0.831591933974;NFY{A,B,C}:0.819629594922;E2F1..5:0.812414490301;GATA6:0.784549822323;AR:0.743297687011;SOX2:0.712984271448;POU3F1..4:0.705758784046;ELF1,2,4:0.640430526981;SOX17:0.606052313999;PBX1:0.600324350256;ZNF143:0.585266203846;RBPJ:0.578389315958;HIC1:0.56864225327;ONECUT1,2:0.550274580474;XCPE1{core}:0.528526558049;TFAP4:0.522180265916;MYB:0.51285478711;CDC5L:0.512108648923;GFI1:0.501720769071;NRF1:0.501261606351;ETS1,2:0.49127812438;PITX1..3:0.475277642233;GFI1B:0.444817667453;FOXD3:0.429483515292;STAT1,3:0.416191446909;EGR1..3:0.409534719974;SP1:0.406777601905;FOXQ1:0.399598526326;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.391832813418;POU1F1:0.385224403494;YY1:0.357272791332;SPIB:0.33976109295;IKZF1:0.336166218769;FOX{I1,J2}:0.330613860889;TFAP2B:0.317617678398;RORA:0.314519298865;LEF1_TCF7_TCF7L1,2:0.276795356117;TEAD1:0.27029761916;HOXA9_MEIS1:0.259787206104;CUX2:0.249619540143;GATA4:0.24280266312;MED-1{core}:0.241179308322;FOXA2:0.237383248458;ARID5B:0.228656675536;STAT5{A,B}:0.219505991751;NANOG:0.200165002554;EN1,2:0.196698910232;PAX8:0.176553953615;NR5A1,2:0.1722394811;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.15544338056;ATF6:0.143158989977;MZF1:0.130495559283;HNF4A_NR2F1,2:0.118500784074;MTE{core}:0.0954309746299;NANOG{mouse}:0.0943741310096;PRDM1:0.0863130183431;BREu{core}:0.0819724535387;GTF2I:0.077178774411;MYOD1:0.0727826669551;ZNF423:0.0701031535059;GZF1:0.0635391846707;FOXP1:0.0587178189524;HOX{A5,B5}:0.0571464280033;NKX2-3_NKX2-5:0.0472248392264;SREBF1,2:0.0395088821645;MAZ:0.0328676770629;SPI1:0.0263465397913;REST:0.0218462597034;FOXN1:0.00456351966674;POU5F1:-0.00912624617478;LHX3,4:-0.0118241257972;HES1:-0.0164431135265;PATZ1:-0.0241707948346;ZNF238:-0.0246591514321;PRRX1,2:-0.0309950487827;BACH2:-0.0321950380793;TEF:-0.0460266588816;TGIF1:-0.0506935692788;EBF1:-0.0527096915067;DMAP1_NCOR{1,2}_SMARC:-0.0598222316545;ZBTB6:-0.0641239041718;GTF2A1,2:-0.066489588884;PAX5:-0.0715000950006;TAL1_TCF{3,4,12}:-0.0781011065555;PAX3,7:-0.0796337418953;ZNF148:-0.0812661495822;NFE2:-0.081400175245;TP53:-0.0980664688448;T:-0.105781012683;bHLH_family:-0.112659770955;MEF2{A,B,C,D}:-0.121689371868;POU6F1:-0.121897510723;FOS_FOS{B,L1}_JUN{B,D}:-0.127868188891;ZBTB16:-0.141130348918;STAT2,4,6:-0.148494542356;CDX1,2,4:-0.150317688664;CREB1:-0.152503304046;FOSL2:-0.163163923095;FOXO1,3,4:-0.163738217666;NFE2L2:-0.181931960484;EVI1:-0.19096915915;SMAD1..7,9:-0.194731476179;BPTF:-0.20023686057;POU2F1..3:-0.215136536229;ZIC1..3:-0.216280346901;HNF1A:-0.221818183104;IRF1,2:-0.236680423063;HMGA1,2:-0.237936020585;PPARG:-0.246056651233;GCM1,2:-0.262903397564;NR3C1:-0.26846027921;AIRE:-0.269693602457;XBP1:-0.271156141499;PDX1:-0.280196544511;FOX{D1,D2}:-0.286553804923;NHLH1,2:-0.2956823903;AHR_ARNT_ARNT2:-0.305844053245;NFIX:-0.308853313431;LMO2:-0.328430524198;UFEwm:-0.337377410597;CRX:-0.346150018162;HOX{A6,A7,B6,B7}:-0.354533105197;KLF4:-0.359994708538;GLI1..3:-0.372448641905;MYBL2:-0.375794045353;NKX2-2,8:-0.39483032987;NFKB1_REL_RELA:-0.401010836306;PAX2:-0.401184285137;MTF1:-0.408187754555;OCT4_SOX2{dimer}:-0.445431481179;NR1H4:-0.447253134325;SPZ1:-0.448415351264;FOX{F1,F2,J1}:-0.453486369952;RFX1:-0.484591063544;FOXM1:-0.489600821126;IRF7:-0.489976435926;FOXL1:-0.492243079717;ZNF384:-0.504804321153;SRF:-0.518102123214;MYFfamily:-0.521455563236;ATF2:-0.544343437543;HLF:-0.565640145316;SNAI1..3:-0.602304930241;ESRRA:-0.603312011098;PAX4:-0.609809989613;ATF4:-0.627727382831;ELK1,4_GABP{A,B1}:-0.664028499185;RUNX1..3:-0.679563908834;RXRA_VDR{dimer}:-0.682551868057;NKX3-1:-0.682975028241;HAND1,2:-0.691093846949;TOPORS:-0.691826136957;CEBPA,B_DDIT3:-0.69901408669;RREB1:-0.710556257869;DBP:-0.766886459482;NKX3-2:-0.773596022208;HOX{A4,D4}:-0.779739692658;NKX6-1,2:-0.795942736408;TBP:-0.825987970148;ATF5_CREB3:-0.860477162819;ALX4:-0.861534897138;RFX2..5_RFXANK_RFXAP:-0.870628197901;VSX1,2:-0.891942652052;FOXP3:-0.898227883187;ZEB1:-0.908146092826;TBX4,5:-0.916890764359;JUN:-0.93527710696;EP300:-0.973041528494;NFIL3:-0.981775910225;TLX2:-0.985138694406;TFCP2:-1.01299409309;HSF1,2:-1.0205857386;NKX2-1,4:-1.03547262318;NFE2L1:-1.05060566142;ESR1:-1.05710869203;MAFB:-1.11927030891;NR6A1:-1.14376249855;HIF1A:-1.16704845573;HMX1:-1.28966714162 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11324-117E1;search_select_hide=table117:FF:11324-117E1 | |||
}} | }} | ||
Latest revision as of 17:52, 4 June 2020
| Name: | Endothelial Cells - Umbilical vein, donor2 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11967 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11967
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11967
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.226 |
| 10 | 10 | 0.171 |
| 100 | 100 | 0.767 |
| 101 | 101 | 0.348 |
| 102 | 102 | 0.771 |
| 103 | 103 | 0.364 |
| 104 | 104 | 0.683 |
| 105 | 105 | 0.587 |
| 106 | 106 | 0.00656 |
| 107 | 107 | 0.355 |
| 108 | 108 | 0.631 |
| 109 | 109 | 0.106 |
| 11 | 11 | 0.244 |
| 110 | 110 | 0.879 |
| 111 | 111 | 0.202 |
| 112 | 112 | 0.153 |
| 113 | 113 | 0.0963 |
| 114 | 114 | 0.115 |
| 115 | 115 | 0.626 |
| 116 | 116 | 0.292 |
| 117 | 117 | 0.563 |
| 118 | 118 | 0.431 |
| 119 | 119 | 0.325 |
| 12 | 12 | 0.923 |
| 120 | 120 | 0.594 |
| 121 | 121 | 0.421 |
| 122 | 122 | 0.719 |
| 123 | 123 | 0.22 |
| 124 | 124 | 0.0216 |
| 125 | 125 | 0.238 |
| 126 | 126 | 0.524 |
| 127 | 127 | 0.3 |
| 128 | 128 | 0.299 |
| 129 | 129 | 0.816 |
| 13 | 13 | 0.435 |
| 130 | 130 | 0.159 |
| 131 | 131 | 0.164 |
| 132 | 132 | 0.929 |
| 133 | 133 | 0.88 |
| 134 | 134 | 0.601 |
| 135 | 135 | 0.624 |
| 136 | 136 | 0.0958 |
| 137 | 137 | 0.0729 |
| 138 | 138 | 0.947 |
| 139 | 139 | 0.00718 |
| 14 | 14 | 0.465 |
| 140 | 140 | 0.194 |
| 141 | 141 | 0.697 |
| 142 | 142 | 0.0252 |
| 143 | 143 | 0.0389 |
| 144 | 144 | 0.716 |
| 145 | 145 | 0.578 |
| 146 | 146 | 0.522 |
| 147 | 147 | 0.926 |
| 148 | 148 | 0.00168 |
| 149 | 149 | 0.975 |
| 15 | 15 | 0.175 |
| 150 | 150 | 0.693 |
| 151 | 151 | 0.268 |
| 152 | 152 | 0.868 |
| 153 | 153 | 0.0106 |
| 154 | 154 | 0.846 |
| 155 | 155 | 0.172 |
| 156 | 156 | 0.229 |
| 157 | 157 | 0.0605 |
| 158 | 158 | 0.134 |
| 159 | 159 | 0.18 |
| 16 | 16 | 0.132 |
| 160 | 160 | 0.997 |
| 161 | 161 | 0.0574 |
| 162 | 162 | 0.621 |
| 163 | 163 | 0.758 |
| 164 | 164 | 0.897 |
| 165 | 165 | 0.33 |
| 166 | 166 | 0.87 |
| 167 | 167 | 0.0469 |
| 168 | 168 | 0.429 |
| 169 | 169 | 0.16 |
| 17 | 17 | 0.18 |
| 18 | 18 | 0.0171 |
| 19 | 19 | 0.299 |
| 2 | 2 | 0.521 |
| 20 | 20 | 0.418 |
| 21 | 21 | 0.502 |
| 22 | 22 | 0.451 |
| 23 | 23 | 0.0931 |
| 24 | 24 | 0.513 |
| 25 | 25 | 0.355 |
| 26 | 26 | 0.0605 |
| 27 | 27 | 0.254 |
| 28 | 28 | 0.54 |
| 29 | 29 | 0.189 |
| 3 | 3 | 0.141 |
| 30 | 30 | 0.687 |
| 31 | 31 | 0.305 |
| 32 | 32 | 0.00738 |
| 33 | 33 | 0.917 |
| 34 | 34 | 0.424 |
| 35 | 35 | 0.0713 |
| 36 | 36 | 0.792 |
| 37 | 37 | 0.183 |
| 38 | 38 | 0.874 |
| 39 | 39 | 0.898 |
| 4 | 4 | 0.29 |
| 40 | 40 | 0.381 |
| 41 | 41 | 0.901 |
| 42 | 42 | 0.74 |
| 43 | 43 | 0.066 |
| 44 | 44 | 0.119 |
| 45 | 45 | 0.766 |
| 46 | 46 | 0.0443 |
| 47 | 47 | 0.34 |
| 48 | 48 | 0.674 |
| 49 | 49 | 0.0885 |
| 5 | 5 | 0.0864 |
| 50 | 50 | 0.957 |
| 51 | 51 | 0.435 |
| 52 | 52 | 0.302 |
| 53 | 53 | 0.58 |
| 54 | 54 | 0.314 |
| 55 | 55 | 0.434 |
| 56 | 56 | 0.476 |
| 57 | 57 | 0.592 |
| 58 | 58 | 0.0739 |
| 59 | 59 | 0.213 |
| 6 | 6 | 0.153 |
| 60 | 60 | 0.0516 |
| 61 | 61 | 0.654 |
| 62 | 62 | 0.0468 |
| 63 | 63 | 0.31 |
| 64 | 64 | 0.293 |
| 65 | 65 | 0.214 |
| 66 | 66 | 0.238 |
| 67 | 67 | 0.608 |
| 68 | 68 | 0.899 |
| 69 | 69 | 0.775 |
| 7 | 7 | 0.663 |
| 70 | 70 | 5.18598e-4 |
| 71 | 71 | 0.0322 |
| 72 | 72 | 0.64 |
| 73 | 73 | 0.982 |
| 74 | 74 | 0.392 |
| 75 | 75 | 0.366 |
| 76 | 76 | 0.907 |
| 77 | 77 | 0.0547 |
| 78 | 78 | 0.649 |
| 79 | 79 | 0.0733 |
| 8 | 8 | 0.616 |
| 80 | 80 | 0.364 |
| 81 | 81 | 0.0818 |
| 82 | 82 | 0.0489 |
| 83 | 83 | 0.631 |
| 84 | 84 | 0.968 |
| 85 | 85 | 0.0267 |
| 86 | 86 | 0.754 |
| 87 | 87 | 0.653 |
| 88 | 88 | 0.272 |
| 89 | 89 | 0.0415 |
| 9 | 9 | 0.668 |
| 90 | 90 | 0.803 |
| 91 | 91 | 0.672 |
| 92 | 92 | 0.145 |
| 93 | 93 | 0.612 |
| 94 | 94 | 0.00809 |
| 95 | 95 | 0.457 |
| 96 | 96 | 0.411 |
| 97 | 97 | 0.385 |
| 98 | 98 | 0.391 |
| 99 | 99 | 0.392 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11967
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000247 human endothelial cell of umbilical vein sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002543 (vein endothelial cell)
0002618 (endothelial cell of umbilical vein)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0010260 (umbilical blood vessel)
0003920 (venous blood vessel)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0002066 (umbilical vein)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000052 (human endothelial cell of the vein sample)
0000247 (human endothelial cell of umbilical vein sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)
