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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000468,UBERON:0000479,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0002050,UBERON:0002242,UBERON:0002328,UBERON:0002384,UBERON:0002532,UBERON:0003068,UBERON:0004120,UBERON:0004880,UBERON:0005423
|DRA_sample_Accession=CAGE@SAMD00005994
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000144,CL:0000255,CL:0000548,CL:0002320,CL:0002371,CL:0002564
|accession_numbers=CAGE;DRX008382;DRR009254;DRZ000679;DRZ002064;DRZ012029;DRZ013414
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0011216,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004905,UBERON:0011135,UBERON:0000075,UBERON:0002216,UBERON:0004765,UBERON:0011134,UBERON:0002209,UBERON:0002213,UBERON:0000982,UBERON:0010317,UBERON:0007844,UBERON:0002242,UBERON:0002204,UBERON:0001434,UBERON:0004770,UBERON:0011138,UBERON:0001130,UBERON:0001066,UBERON:0001468
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002564
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000123
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr14:61116183..61116208,-!p1@SIX1!1.83!244.58!SIX1;;chr12:54393880..54393962,+!p1@HOXC9!1.66!45.02!HOXC9;;chr7:15726296..15726315,-!p1@MEOX2!1.66!45.02!MEOX2;;chr7:27192185..27192209,-!p1@HOXA3!1.63!42.01!HOXA3;;chr9:132427883..132427951,+!p2@PRRX2!1.60!39.01!PRRX2;;chr17:46682321..46682362,-!p1@HOXB6!1.60!38.51!HOXB6;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.59!37.51!HOXC5;;chr9:132427972..132428056,+!p1@PRRX2!1.58!48.02!PRRX2;;chr7:19157248..19157268,-!p1@TWIST1!1.56!94.53!TWIST1;;chr5:158526917..158526932,-!p1@EBF1!1.54!81.03!EBF1;;chr7:15726243..15726293,-!p2@MEOX2!1.51!31.51!MEOX2;;chr7:27196217..27196246,-!p2@HOXA7!1.51!31.01!HOXA7;;chr17:46675558..46675577,-!p2@HOXB6!1.49!30.01!HOXB6;;chr16:86600426..86600441,+!p1@FOXC2!1.45!66.02!FOXC2;;chr3:147127142..147127168,+!p1@ZIC1!1.45!27.51!ZIC1;;chr6:1610293..1610310,+!p1@FOXC1!1.43!42.51!FOXC1;;chr22:19748231..19748317,+!p1@TBX1!1.42!25.51!TBX1;;chr12:54694758..54694805,-!p1@NFE2!1.39!28.51!NFE2;;chr14:37131058..37131139,+!p1@PAX9!1.39!23.51!PAX9;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.34!22.51!GLIS1;;chr7:27205136..27205164,-!p1@HOXA9!1.34!21.01!HOXA9;;chr12:54378923..54378966,+!p1@HOXC10!1.34!21.01!HOXC10;;chr17:46688334..46688385,-!p1@HOXB7!1.33!29.51!HOXB7;;chr12:54379029..54379057,+!p2@HOXC10!1.33!20.51!HOXC10;;chr12:66218255..66218304,+!p3@HMGA2!1.32!52.02!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.31!32.01!TCF12;;chr12:54402745..54402788,+!p1@HOXC8!1.27!17.51!HOXC8;;chr7:19157043..19157088,-!p2@TWIST1!1.26!43.01!TWIST1;;chr19:13134772..13134822,+!p2@NFIX!1.24!24.01!NFIX;;chr12:66218598..66218645,+!p2@HMGA2!1.23!72.52!HMGA2;;chr6:45296048..45296082,+!p1@RUNX2!1.22!18.01!RUNX2;;chr12:66218212..66218244,+!p5@HMGA2!1.20!21.51!HMGA2;;chr3:147111231..147111281,+!p3@ZIC1!1.20!15.01!ZIC1;;chr1:170633348..170633399,+!p2@PRRX1!1.19!19.51!PRRX1;;chr14:37126765..37126799,+!p2@PAX9!1.18!14.00!PAX9;;chr5:72744594..72744609,-!p1@FOXD1!1.16!61.52!FOXD1;;chr17:46675420..46675465,-!p3@HOXB6!1.12!14.00!HOXB6;;chr17:46667594..46667619,-!p1@HOXB3!1.10!11.50!HOXB3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.10!11.50!HOXC5;;chr12:54422217..54422239,+!p3@HOXC6!1.08!11.00!HOXC6;;chr17:46675539..46675551,-!p7@HOXB6!1.08!11.00!HOXB6;;chr3:12329358..12329393,+!p3@PPARG!1.06!26.01!PPARG;;chr8:48650715..48650735,-!p1@CEBPD!1.05!1315.95!CEBPD;;chr6:85474299..85474324,-!p1@TBX18!1.05!18.51!TBX18;;chr2:214015111..214015179,-!p1@IKZF2!1.05!18.51!IKZF2;;chr11:46299539..46299620,+!p2@CREB3L1!1.05!17.51!CREB3L1;;chr2:5832508..5832524,+!p1@SOX11!1.04!10.00!SOX11;;chr7:15725757..15725828,-!p5@MEOX2!1.02!9.50!MEOX2;;chr12:66218836..66218888,+!p1@HMGA2!1.01!87.53!HMGA2;;chr1:59249732..59249749,-!p2@JUN!1.00!111.54!JUN;;chr3:12329397..12329433,+!p2@PPARG!1.00!21.01!PPARG;;chr3:25470156..25470227,+!p2@RARB!1.00!9.00!RARB;;chr6:1612300..1612324,+!p3@FOXC1!1.00!9.00!FOXC1;;chr19:46801639..46801699,+!p1@HIF3A!1.00!9.00!HIF3A;;chr11:47279504..47279563,+!p1@NR1H3!0.99!20.51!NR1H3;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.51!OSR1;;chr6:1612248..1612281,+!p2@FOXC1!0.97!9.00!FOXC1;;chr19:49864746..49864780,-!p2@TEAD2!0.95!11.00!TEAD2;;chr7:27183291..27183324,-!p1@HOXA5!0.95!8.00!HOXA5;;chr7:27213893..27213954,-!p1@HOXA10!0.95!8.00!HOXA10;;chr12:66218183..66218209,+!p4@HMGA2!0.94!15.01!HMGA2;;chr11:46299199..46299233,+!p1@CREB3L1!0.93!40.01!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!0.93!8.50!PRRX1;;chr17:46691732..46691766,-!p4@HOXB8!0.93!7.50!HOXB8;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.92!76.53!GLIS2;;chr14:61116168..61116180,-!p2@SIX1!0.92!8.50!SIX1;;chr14:21994337..21994442,-!p1@SALL2!0.91!20.51!SALL2;;chr11:63684602..63684664,-!p1@RCOR2!0.91!14.50!RCOR2;;chr15:96873984..96873999,+!p3@NR2F2!0.90!53.02!NR2F2;;chr21:47063625..47063658,+!p1@PCBP3!0.90!31.51!PCBP3;;chr17:46655704..46655718,-!p2@HOXB4!0.90!10.50!HOXB4;;chr3:12330560..12330579,+!p1@PPARG!0.90!8.00!PPARG;;chr5:158527139..158527161,-!p5@EBF1!0.90!7.00!EBF1;;chr7:27205106..27205134,-!p2@HOXA9!0.90!7.00!HOXA9;;chr1:170632959..170632987,+!p4@PRRX1!0.89!7.50!PRRX1;;chr12:53614115..53614154,-!p1@RARG!0.88!37.01!RARG;;chr12:115122318..115122331,-!p2@TBX3!0.88!6.50!TBX3;;chr12:54694807..54694832,-!p3@NFE2!0.88!6.50!NFE2;;chr1:170632250..170632277,+!p7@PRRX1!0.88!6.50!PRRX1;;chr2:85981107..85981120,+!p3@ATOH8!0.88!6.50!ATOH8;;chr3:147111198..147111225,+!p4@ZIC1!0.88!6.50!ZIC1;;chr5:158527104..158527135,-!p4@EBF1!0.88!6.50!EBF1;;chr7:15726176..15726191,-!p3@MEOX2!0.88!6.50!MEOX2;;chr17:46690839..46690884,-!p1@HOXB8!0.88!6.50!HOXB8;;chrY:21906594..21906622,-!p1@KDM5D!0.88!6.50!KDM5D;;chr8:49833948..49833973,-!p2@SNAI2!0.87!43.01!SNAI2;;chr9:73029219..73029289,-!p2@KLF9!0.87!20.51!KLF9;;chr5:92918919..92918942,+!p1@NR2F1!0.86!29.51!NR2F1;;chr17:46622070..46622109,-!p1@HOXB2!0.86!14.50!HOXB2;;chr2:239756671..239756732,+!p1@TWIST2!0.85!20.51!TWIST2;;chr11:113930425..113930471,+!p1@ZBTB16!0.85!9.00!ZBTB16;;chr19:45260775..45260838,+!p5@BCL3!0.85!8.00!BCL3;;chr17:46675586..46675600,-!p6@HOXB6!0.85!6.00!HOXB6;;chr2:214015343..214015366,-!p3@IKZF2!0.85!6.00!IKZF2;;chr2:45236540..45236577,-!p1@SIX2!0.85!6.00!SIX2;;chr3:147127177..147127194,+!p2@ZIC1!0.85!6.00!ZIC1;;chr8:77593474..77593612,+!p1@ZFHX4!0.84!26.51!ZFHX4;;chr12:57504975..57505019,-!p2@STAT6!0.84!25.51!STAT6;;chr2:239756739..239756755,+!p2@TWIST2!0.84!10.50!TWIST2;;chr15:96874244..96874259,+!p5@NR2F2!0.83!14.50!NR2F2;;chr19:58987786..58987805,+!p3@ZNF446!0.83!8.50!ZNF446;;chr7:44143925..44143970,+!p1@AEBP1!0.81!131.54!AEBP1;;chr14:24837368..24837401,+!p1@NFATC4!0.81!13.50!NFATC4;;chr10:131762504..131762555,-!p1@EBF3!0.81!5.50!EBF3;;chr12:54410948..54410992,+!p3@HOXC5!0.81!5.50!HOXC5;;chr19:9609272..9609297,-!p1@ZNF560!0.81!5.50!ZNF560;;chr17:46667628..46667642,-!p2@HOXB3!0.81!5.50!HOXB3;;chr8:49833978..49833996,-!p1@SNAI2!0.80!118.04!SNAI2;;chr5:321810..321877,+!p1@AHRR!0.80!18.01!AHRR;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.50!HOXB7;;chr5:72744445..72744466,-!p2@FOXD1!0.79!9.00!FOXD1;;chr6:34204672..34204692,+!p1@HMGA1!0.78!625.71!HMGA1;;chr9:73028814..73028895,-!p1@KLF9!0.78!54.52!KLF9;;chr15:96874012..96874042,+!p2@NR2F2!0.78!50.02!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.78!9.50!ZFP106;;chr17:46621101..46621143,-!p7@HOXB2!0.78!7.00!HOXB2;;chr17:46671504..46671541,-!p2@HOXB5!0.78!5.00!HOXB5;;chr11:46299443..46299459,+!p4@CREB3L1!0.78!5.00!CREB3L1;;chr12:54378984..54378996,+!p7@HOXC10!0.78!5.00!HOXC10;;chr12:54380404..54380433,+!p3@HOXC10!0.78!5.00!HOXC10;;chr2:214014959..214015006,-!p4@IKZF2!0.78!5.00!IKZF2;;chr7:27142290..27142310,-!p1@HOXA2!0.78!5.00!HOXA2;;chr7:27183263..27183284,-!p2@HOXA5!0.78!5.00!HOXA5;;chr19:45971246..45971265,+!p1@FOSB!0.77!100.03!FOSB;;chr2:85981222..85981259,+!p2@ATOH8!0.77!8.50!ATOH8;;chr13:73633131..73633149,+!p1@KLF5!0.76!55.52!KLF5;;chr20:48599506..48599526,+!p1@SNAI1!0.75!32.51!SNAI1;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.75!24.01!GLIS2;;chr16:73093174..73093209,-!p3@ZFHX3!0.75!6.50!ZFHX3;;chr7:100076723..100076737,-!p3@TSC22D4!0.74!7.50!TSC22D4;;chr8:116680215..116680245,-!p6@TRPS1!0.74!7.50!TRPS1;;chr20:50179368..50179392,-!p2@NFATC2!0.74!6.00!NFATC2;;chr1:170632723..170632739,+!p8@PRRX1!0.74!4.50!PRRX1;;chr7:15726206..15726217,-!p6@MEOX2!0.74!4.50!MEOX2;;chr7:15726220..15726236,-!p4@MEOX2!0.74!4.50!MEOX2;;chr15:57511589..57511608,+!p4@TCF12!0.74!4.50!TCF12;;chr11:125034640..125034655,+!p1@PKNOX2!0.74!4.50!PKNOX2;;chr12:54402790..54402805,+!p2@HOXC8!0.74!4.50!HOXC8;;chr5:124082322..124082364,-!p1@ZNF608!0.73!12.00!ZNF608;;chr10:63809013..63809041,+!p3@ARID5B!0.72!26.51!ARID5B;;chr3:187463179..187463201,-!p2@BCL6!0.72!19.51!BCL6;;chr17:46622205..46622218,-!p3@HOXB2!0.72!5.00!HOXB2;;chr16:79633894..79633954,-!p3@MAF!0.71!8.50!MAF;;chr12:66218443..66218461,+!p8@HMGA2!0.71!5.50!HMGA2;;chr5:92919068..92919082,+!p5@NR2F1!0.71!5.00!NR2F1;;chr19:56154958..56155027,+!p1@ZNF581!0.70!152.55!ZNF581;;chr20:39317868..39317884,-!p1@MAFB!0.70!54.52!MAFB;;chr10:8096631..8096660,+!p1@GATA3!0.70!5.00!GATA3;;chr1:203055129..203055147,-!p1@MYOG!0.70!4.00!MYOG;;chr16:54320127..54320148,-!p6@IRX3!0.70!4.00!IRX3;;chr22:19746969..19746987,+!p2@TBX1!0.70!4.00!TBX1;;chr2:176994408..176994492,+!p1@HOXD8!0.70!4.00!HOXD8;;chr20:30193083..30193098,+!p1@ID1!0.69!361.62!ID1;;chr2:113993052..113993097,-!p2@PAX8!0.69!9.50!PAX8;;chr16:86544113..86544145,+!p1@FOXF1!0.69!5.00!FOXF1;;chr17:17726907..17726958,-!p2@SREBF1!0.68!26.51!SREBF1;;chr5:92920456..92920488,+!p9@NR2F1!0.68!4.50!NR2F1;;chr1:59249688..59249703,-!p3@JUN!0.67!25.01!JUN;;chr11:65687362..65687436,+!p3@DRAP1!0.67!19.01!DRAP1;;chr17:46621937..46621966,-!p2@HOXB2!0.67!11.00!HOXB2;;chr17:46622114..46622138,-!p4@HOXB2!0.67!6.00!HOXB2;;chr11:65687158..65687216,+!p4@DRAP1!0.66!23.51!DRAP1;;chr6:34204921..34204939,+!p3@HMGA1!0.65!123.04!HMGA1;;chr1:158969752..158969780,+!p6@IFI16!0.65!6.50!IFI16;;chr1:158969727..158969749,+!p11@IFI16!0.65!3.50!IFI16;;chr5:153857778..153857794,-!p1@HAND1!0.65!3.50!HAND1;;chr12:54422245..54422263,+!p7@HOXC6!0.65!3.50!HOXC6;;chr16:86601088..86601105,+!p5@FOXC2!0.65!3.50!FOXC2;;chr17:46621146..46621180,-!p10@HOXB2!0.65!3.50!HOXB2;;chr17:46675469..46675481,-!p4@HOXB6!0.65!3.50!HOXB6;;chr17:46688310..46688323,-!p4@HOXB7!0.65!3.50!HOXB7;;chr2:119604456..119604501,-!p2@EN1!0.65!3.50!EN1;;chr6:21593973..21593988,+!p1@SOX4!0.64!143.55!SOX4;;chr9:94186131..94186174,-!p2@NFIL3!0.64!32.51!NFIL3;;chr14:21994449..21994524,-!p2@SALL2!0.64!11.50!SALL2;;chr15:96874145..96874166,+!p7@NR2F2!0.64!7.00!NR2F2;;chr1:23694556..23694584,-!p6@ZNF436!0.64!4.50!ZNF436;;chr1:170633262..170633285,+!p3@PRRX1!0.64!4.00!PRRX1;;chr1:59249707..59249727,-!p1@JUN!0.63!164.06!JUN;;chr19:7580944..7581031,+!p1@ZNF358!0.63!118.04!ZNF358;;chrX:106960285..106960299,-!p1@TSC22D3!0.63!104.04!TSC22D3;;chr19:45251943..45252006,+!p1@BCL3!0.63!102.53!BCL3;;chr16:79634624..79634642,-!p1@MAF!0.63!15.01!MAF;;chr1:158979851..158979865,+!p5@IFI16!0.63!8.00!IFI16;;chr16:54320158..54320200,-!p5@IRX3!0.63!5.00!IRX3;;chr7:149470540..149470596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|expression_enrichment_score=chr14:61116183..61116208,-!p1@SIX1!1.83!244.58!SIX1;;chr12:54393880..54393962,+!p1@HOXC9!1.66!45.02!HOXC9;;chr7:15726296..15726315,-!p1@MEOX2!1.66!45.02!MEOX2;;chr7:27192185..27192209,-!p1@HOXA3!1.63!42.01!HOXA3;;chr9:132427883..132427951,+!p2@PRRX2!1.60!39.01!PRRX2;;chr17:46682321..46682362,-!p1@HOXB6!1.60!38.51!HOXB6;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.59!37.51!HOXC5;;chr9:132427972..132428056,+!p1@PRRX2!1.58!48.02!PRRX2;;chr7:19157248..19157268,-!p1@TWIST1!1.56!94.53!TWIST1;;chr5:158526917..158526932,-!p1@EBF1!1.54!81.03!EBF1;;chr7:15726243..15726293,-!p2@MEOX2!1.51!31.51!MEOX2;;chr7:27196217..27196246,-!p2@HOXA7!1.51!31.01!HOXA7;;chr17:46675558..46675577,-!p2@HOXB6!1.49!30.01!HOXB6;;chr16:86600426..86600441,+!p1@FOXC2!1.45!66.02!FOXC2;;chr3:147127142..147127168,+!p1@ZIC1!1.45!27.51!ZIC1;;chr6:1610293..1610310,+!p1@FOXC1!1.43!42.51!FOXC1;;chr22:19748231..19748317,+!p1@TBX1!1.42!25.51!TBX1;;chr12:54694758..54694805,-!p1@NFE2!1.39!28.51!NFE2;;chr14:37131058..37131139,+!p1@PAX9!1.39!23.51!PAX9;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.34!22.51!GLIS1;;chr7:27205136..27205164,-!p1@HOXA9!1.34!21.01!HOXA9;;chr12:54378923..54378966,+!p1@HOXC10!1.34!21.01!HOXC10;;chr17:46688334..46688385,-!p1@HOXB7!1.33!29.51!HOXB7;;chr12:54379029..54379057,+!p2@HOXC10!1.33!20.51!HOXC10;;chr12:66218255..66218304,+!p3@HMGA2!1.32!52.02!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.31!32.01!TCF12;;chr12:54402745..54402788,+!p1@HOXC8!1.27!17.51!HOXC8;;chr7:19157043..19157088,-!p2@TWIST1!1.26!43.01!TWIST1;;chr19:13134772..13134822,+!p2@NFIX!1.24!24.01!NFIX;;chr12:66218598..66218645,+!p2@HMGA2!1.23!72.52!HMGA2;;chr6:45296048..45296082,+!p1@RUNX2!1.22!18.01!RUNX2;;chr12:66218212..66218244,+!p5@HMGA2!1.20!21.51!HMGA2;;chr3:147111231..147111281,+!p3@ZIC1!1.20!15.01!ZIC1;;chr1:170633348..170633399,+!p2@PRRX1!1.19!19.51!PRRX1;;chr14:37126765..37126799,+!p2@PAX9!1.18!14.00!PAX9;;chr5:72744594..72744609,-!p1@FOXD1!1.16!61.52!FOXD1;;chr17:46675420..46675465,-!p3@HOXB6!1.12!14.00!HOXB6;;chr17:46667594..46667619,-!p1@HOXB3!1.10!11.50!HOXB3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.10!11.50!HOXC5;;chr12:54422217..54422239,+!p3@HOXC6!1.08!11.00!HOXC6;;chr17:46675539..46675551,-!p7@HOXB6!1.08!11.00!HOXB6;;chr3:12329358..12329393,+!p3@PPARG!1.06!26.01!PPARG;;chr8:48650715..48650735,-!p1@CEBPD!1.05!1315.95!CEBPD;;chr6:85474299..85474324,-!p1@TBX18!1.05!18.51!TBX18;;chr2:214015111..214015179,-!p1@IKZF2!1.05!18.51!IKZF2;;chr11:46299539..46299620,+!p2@CREB3L1!1.05!17.51!CREB3L1;;chr2:5832508..5832524,+!p1@SOX11!1.04!10.00!SOX11;;chr7:15725757..15725828,-!p5@MEOX2!1.02!9.50!MEOX2;;chr12:66218836..66218888,+!p1@HMGA2!1.01!87.53!HMGA2;;chr1:59249732..59249749,-!p2@JUN!1.00!111.54!JUN;;chr3:12329397..12329433,+!p2@PPARG!1.00!21.01!PPARG;;chr3:25470156..25470227,+!p2@RARB!1.00!9.00!RARB;;chr6:1612300..1612324,+!p3@FOXC1!1.00!9.00!FOXC1;;chr19:46801639..46801699,+!p1@HIF3A!1.00!9.00!HIF3A;;chr11:47279504..47279563,+!p1@NR1H3!0.99!20.51!NR1H3;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.51!OSR1;;chr6:1612248..1612281,+!p2@FOXC1!0.97!9.00!FOXC1;;chr19:49864746..49864780,-!p2@TEAD2!0.95!11.00!TEAD2;;chr7:27183291..27183324,-!p1@HOXA5!0.95!8.00!HOXA5;;chr7:27213893..27213954,-!p1@HOXA10!0.95!8.00!HOXA10;;chr12:66218183..66218209,+!p4@HMGA2!0.94!15.01!HMGA2;;chr11:46299199..46299233,+!p1@CREB3L1!0.93!40.01!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!0.93!8.50!PRRX1;;chr17:46691732..46691766,-!p4@HOXB8!0.93!7.50!HOXB8;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.92!76.53!GLIS2;;chr14:61116168..61116180,-!p2@SIX1!0.92!8.50!SIX1;;chr14:21994337..21994442,-!p1@SALL2!0.91!20.51!SALL2;;chr11:63684602..63684664,-!p1@RCOR2!0.91!14.50!RCOR2;;chr15:96873984..96873999,+!p3@NR2F2!0.90!53.02!NR2F2;;chr21:47063625..47063658,+!p1@PCBP3!0.90!31.51!PCBP3;;chr17:46655704..46655718,-!p2@HOXB4!0.90!10.50!HOXB4;;chr3:12330560..12330579,+!p1@PPARG!0.90!8.00!PPARG;;chr5:158527139..158527161,-!p5@EBF1!0.90!7.00!EBF1;;chr7:27205106..27205134,-!p2@HOXA9!0.90!7.00!HOXA9;;chr1:170632959..170632987,+!p4@PRRX1!0.89!7.50!PRRX1;;chr12:53614115..53614154,-!p1@RARG!0.88!37.01!RARG;;chr12:115122318..115122331,-!p2@TBX3!0.88!6.50!TBX3;;chr12:54694807..54694832,-!p3@NFE2!0.88!6.50!NFE2;;chr1:170632250..170632277,+!p7@PRRX1!0.88!6.50!PRRX1;;chr2:85981107..85981120,+!p3@ATOH8!0.88!6.50!ATOH8;;chr3:147111198..147111225,+!p4@ZIC1!0.88!6.50!ZIC1;;chr5:158527104..158527135,-!p4@EBF1!0.88!6.50!EBF1;;chr7:15726176..15726191,-!p3@MEOX2!0.88!6.50!MEOX2;;chr17:46690839..46690884,-!p1@HOXB8!0.88!6.50!HOXB8;;chrY:21906594..21906622,-!p1@KDM5D!0.88!6.50!KDM5D;;chr8:49833948..49833973,-!p2@SNAI2!0.87!43.01!SNAI2;;chr9:73029219..73029289,-!p2@KLF9!0.87!20.51!KLF9;;chr5:92918919..92918942,+!p1@NR2F1!0.86!29.51!NR2F1;;chr17:46622070..46622109,-!p1@HOXB2!0.86!14.50!HOXB2;;chr2:239756671..239756732,+!p1@TWIST2!0.85!20.51!TWIST2;;chr11:113930425..113930471,+!p1@ZBTB16!0.85!9.00!ZBTB16;;chr19:45260775..45260838,+!p5@BCL3!0.85!8.00!BCL3;;chr17:46675586..46675600,-!p6@HOXB6!0.85!6.00!HOXB6;;chr2:214015343..214015366,-!p3@IKZF2!0.85!6.00!IKZF2;;chr2:45236540..45236577,-!p1@SIX2!0.85!6.00!SIX2;;chr3:147127177..147127194,+!p2@ZIC1!0.85!6.00!ZIC1;;chr8:77593474..77593612,+!p1@ZFHX4!0.84!26.51!ZFHX4;;chr12:57504975..57505019,-!p2@STAT6!0.84!25.51!STAT6;;chr2:239756739..239756755,+!p2@TWIST2!0.84!10.50!TWIST2;;chr15:96874244..96874259,+!p5@NR2F2!0.83!14.50!NR2F2;;chr19:58987786..58987805,+!p3@ZNF446!0.83!8.50!ZNF446;;chr7:44143925..44143970,+!p1@AEBP1!0.81!131.54!AEBP1;;chr14:24837368..24837401,+!p1@NFATC4!0.81!13.50!NFATC4;;chr10:131762504..131762555,-!p1@EBF3!0.81!5.50!EBF3;;chr12:54410948..54410992,+!p3@HOXC5!0.81!5.50!HOXC5;;chr19:9609272..9609297,-!p1@ZNF560!0.81!5.50!ZNF560;;chr17:46667628..46667642,-!p2@HOXB3!0.81!5.50!HOXB3;;chr8:49833978..49833996,-!p1@SNAI2!0.80!118.04!SNAI2;;chr5:321810..321877,+!p1@AHRR!0.80!18.01!AHRR;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.50!HOXB7;;chr5:72744445..72744466,-!p2@FOXD1!0.79!9.00!FOXD1;;chr6:34204672..34204692,+!p1@HMGA1!0.78!625.71!HMGA1;;chr9:73028814..73028895,-!p1@KLF9!0.78!54.52!KLF9;;chr15:96874012..96874042,+!p2@NR2F2!0.78!50.02!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.78!9.50!ZFP106;;chr17:46621101..46621143,-!p7@HOXB2!0.78!7.00!HOXB2;;chr17:46671504..46671541,-!p2@HOXB5!0.78!5.00!HOXB5;;chr11:46299443..46299459,+!p4@CREB3L1!0.78!5.00!CREB3L1;;chr12:54378984..54378996,+!p7@HOXC10!0.78!5.00!HOXC10;;chr12:54380404..54380433,+!p3@HOXC10!0.78!5.00!HOXC10;;chr2:214014959..214015006,-!p4@IKZF2!0.78!5.00!IKZF2;;chr7:27142290..27142310,-!p1@HOXA2!0.78!5.00!HOXA2;;chr7:27183263..27183284,-!p2@HOXA5!0.78!5.00!HOXA5;;chr19:45971246..45971265,+!p1@FOSB!0.77!100.03!FOSB;;chr2:85981222..85981259,+!p2@ATOH8!0.77!8.50!ATOH8;;chr13:73633131..73633149,+!p1@KLF5!0.76!55.52!KLF5;;chr20:48599506..48599526,+!p1@SNAI1!0.75!32.51!SNAI1;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.75!24.01!GLIS2;;chr16:73093174..73093209,-!p3@ZFHX3!0.75!6.50!ZFHX3;;chr7:100076723..100076737,-!p3@TSC22D4!0.74!7.50!TSC22D4;;chr8:116680215..116680245,-!p6@TRPS1!0.74!7.50!TRPS1;;chr20:50179368..50179392,-!p2@NFATC2!0.74!6.00!NFATC2;;chr1:170632723..170632739,+!p8@PRRX1!0.74!4.50!PRRX1;;chr7:15726206..15726217,-!p6@MEOX2!0.74!4.50!MEOX2;;chr7:15726220..15726236,-!p4@MEOX2!0.74!4.50!MEOX2;;chr15:57511589..57511608,+!p4@TCF12!0.74!4.50!TCF12;;chr11:125034640..125034655,+!p1@PKNOX2!0.74!4.50!PKNOX2;;chr12:54402790..54402805,+!p2@HOXC8!0.74!4.50!HOXC8;;chr5:124082322..124082364,-!p1@ZNF608!0.73!12.00!ZNF608;;chr10:63809013..63809041,+!p3@ARID5B!0.72!26.51!ARID5B;;chr3:187463179..187463201,-!p2@BCL6!0.72!19.51!BCL6;;chr17:46622205..46622218,-!p3@HOXB2!0.72!5.00!HOXB2;;chr16:79633894..79633954,-!p3@MAF!0.71!8.50!MAF;;chr12:66218443..66218461,+!p8@HMGA2!0.71!5.50!HMGA2;;chr5:92919068..92919082,+!p5@NR2F1!0.71!5.00!NR2F1;;chr19:56154958..56155027,+!p1@ZNF581!0.70!152.55!ZNF581;;chr20:39317868..39317884,-!p1@MAFB!0.70!54.52!MAFB;;chr10:8096631..8096660,+!p1@GATA3!0.70!5.00!GATA3;;chr1:203055129..203055147,-!p1@MYOG!0.70!4.00!MYOG;;chr16:54320127..54320148,-!p6@IRX3!0.70!4.00!IRX3;;chr22:19746969..19746987,+!p2@TBX1!0.70!4.00!TBX1;;chr2:176994408..176994492,+!p1@HOXD8!0.70!4.00!HOXD8;;chr20:30193083..30193098,+!p1@ID1!0.69!361.62!ID1;;chr2:113993052..113993097,-!p2@PAX8!0.69!9.50!PAX8;;chr16:86544113..86544145,+!p1@FOXF1!0.69!5.00!FOXF1;;chr17:17726907..17726958,-!p2@SREBF1!0.68!26.51!SREBF1;;chr5:92920456..92920488,+!p9@NR2F1!0.68!4.50!NR2F1;;chr1:59249688..59249703,-!p3@JUN!0.67!25.01!JUN;;chr11:65687362..65687436,+!p3@DRAP1!0.67!19.01!DRAP1;;chr17:46621937..46621966,-!p2@HOXB2!0.67!11.00!HOXB2;;chr17:46622114..46622138,-!p4@HOXB2!0.67!6.00!HOXB2;;chr11:65687158..65687216,+!p4@DRAP1!0.66!23.51!DRAP1;;chr6:34204921..34204939,+!p3@HMGA1!0.65!123.04!HMGA1;;chr1:158969752..158969780,+!p6@IFI16!0.65!6.50!IFI16;;chr1:158969727..158969749,+!p11@IFI16!0.65!3.50!IFI16;;chr5:153857778..153857794,-!p1@HAND1!0.65!3.50!HAND1;;chr12:54422245..54422263,+!p7@HOXC6!0.65!3.50!HOXC6;;chr16:86601088..86601105,+!p5@FOXC2!0.65!3.50!FOXC2;;chr17:46621146..46621180,-!p10@HOXB2!0.65!3.50!HOXB2;;chr17:46675469..46675481,-!p4@HOXB6!0.65!3.50!HOXB6;;chr17:46688310..46688323,-!p4@HOXB7!0.65!3.50!HOXB7;;chr2:119604456..119604501,-!p2@EN1!0.65!3.50!EN1;;chr6:21593973..21593988,+!p1@SOX4!0.64!143.55!SOX4;;chr9:94186131..94186174,-!p2@NFIL3!0.64!32.51!NFIL3;;chr14:21994449..21994524,-!p2@SALL2!0.64!11.50!SALL2;;chr15:96874145..96874166,+!p7@NR2F2!0.64!7.00!NR2F2;;chr1:23694556..23694584,-!p6@ZNF436!0.64!4.50!ZNF436;;chr1:170633262..170633285,+!p3@PRRX1!0.64!4.00!PRRX1;;chr1:59249707..59249727,-!p1@JUN!0.63!164.06!JUN;;chr19:7580944..7581031,+!p1@ZNF358!0.63!118.04!ZNF358;;chrX:106960285..106960299,-!p1@TSC22D3!0.63!104.04!TSC22D3;;chr19:45251943..45252006,+!p1@BCL3!0.63!102.53!BCL3;;chr16:79634624..79634642,-!p1@MAF!0.63!15.01!MAF;;chr1:158979851..158979865,+!p5@IFI16!0.63!8.00!IFI16;;chr16:54320158..54320200,-!p5@IRX3!0.63!5.00!IRX3;;chr7:149470540..149470596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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000982;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002242;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007844;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12019.11409-118E5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12019.11409-118E5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12019.11409-118E5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12019.11409-118E5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12019.11409-118E5.hg38.nobarcode.ctss.bed.gz
|id=FF:11409-118E5
|id=FF:11409-118E5
|is_a=EFO:0002091;;FF:0000002;;FF:0000123;;FF:0000210
|is_a=EFO:0002091;;FF:0000123
|is_obsolete=
|library_id=CNhs12019
|library_id_phase_based=2:CNhs12019
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11409
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11409
|name=Nucleus Pulposus Cell, donor2
|name=Nucleus Pulposus Cell, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12019,LSID837,release011,COMPLETED
|profile_hcage=CNhs12019,LSID837,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0,0,0,0.176140627153145,0,0.140786015619494,0,0.2351977596938,0.612130919445192,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659715654354648,0,0,0,0,0,0.0781827308850875,0,0,0.168147455927018,0,0,0,0,0,0,0,0,0,0,0,0,0.452625830684647,0.223609377014842,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.398028867207316,0,0.0543206622700724,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.176140627153145,0,0,0,0,0,0,0,0,-0.150847969525824,0,0,0,0,0,0,0,0,0,0,-0.065034644033624,0.060889510433991,0.15055202285294,0.477219985303347,0,0,0.0781052759154385,0.426758243321588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00830328034588851,0,0,0,0.113414100963504,0.549475157562304,0,0,0,0,0,0
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|rna_box=118
|rna_box=118
|rna_catalog_number=SC4805
|rna_catalog_number=SC4805
Line 54: Line 75:
|rna_rin=
|rna_rin=
|rna_sample_type=total RNA
|rna_sample_type=total RNA
|rna_tube_id=118E5
|rna_tube_id=1.18E+07
|rna_weight_ug=10
|rna_weight_ug=10
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 69: Line 91:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.66208283134251e-212!GO:0005737;cytoplasm;1.08152634761794e-182!GO:0043226;organelle;1.72730010939872e-168!GO:0043229;intracellular organelle;3.19696063175414e-168!GO:0043231;intracellular membrane-bound organelle;1.41499934788408e-165!GO:0043227;membrane-bound organelle;3.13615845209462e-165!GO:0044444;cytoplasmic part;5.01840627234719e-141!GO:0044422;organelle part;1.21021805835782e-114!GO:0044446;intracellular organelle part;2.64797664401643e-113!GO:0044237;cellular metabolic process;1.13583779360325e-81!GO:0044238;primary metabolic process;5.63883669698556e-81!GO:0032991;macromolecular complex;6.94398889228126e-78!GO:0030529;ribonucleoprotein complex;4.51075284757269e-75!GO:0005739;mitochondrion;1.73454873990502e-73!GO:0043170;macromolecule metabolic process;1.31081417610859e-68!GO:0005515;protein binding;1.0392577316612e-67!GO:0043233;organelle lumen;2.50408753683962e-58!GO:0031974;membrane-enclosed lumen;2.50408753683962e-58!GO:0005634;nucleus;2.29132271493082e-52!GO:0005840;ribosome;9.68490816247434e-52!GO:0003723;RNA binding;1.79657688957866e-50!GO:0044428;nuclear part;1.48766647519553e-49!GO:0031090;organelle membrane;6.35899090091495e-49!GO:0044429;mitochondrial part;3.81267041223791e-47!GO:0006412;translation;4.44643953003184e-46!GO:0003735;structural constituent of ribosome;1.05999519999853e-45!GO:0019538;protein metabolic process;6.58036160216764e-45!GO:0009058;biosynthetic process;6.73893856151981e-43!GO:0044260;cellular macromolecule metabolic process;9.3011283011049e-41!GO:0044267;cellular protein metabolic process;2.68133183223616e-39!GO:0033279;ribosomal subunit;2.84035094699783e-39!GO:0044249;cellular biosynthetic process;1.33942431232322e-38!GO:0016043;cellular component organization and biogenesis;2.73058796859598e-38!GO:0009059;macromolecule biosynthetic process;3.79765771927043e-38!GO:0043234;protein complex;9.32963887219901e-38!GO:0015031;protein transport;1.82118363787734e-37!GO:0005829;cytosol;2.69185903116833e-37!GO:0031967;organelle envelope;1.14428083295647e-36!GO:0010467;gene expression;1.56489602382789e-36!GO:0031975;envelope;1.96376116797139e-36!GO:0033036;macromolecule localization;3.38430926482515e-36!GO:0045184;establishment of protein localization;9.42440275106636e-35!GO:0008104;protein localization;3.1878704080398e-34!GO:0006396;RNA processing;3.49040540079927e-34!GO:0043283;biopolymer metabolic process;7.98789170719095e-33!GO:0005740;mitochondrial envelope;9.91229074966742e-31!GO:0031981;nuclear lumen;1.68856795705933e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.70345843213919e-29!GO:0016071;mRNA metabolic process;1.8432099996829e-29!GO:0031966;mitochondrial membrane;2.5260275751591e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.2873459473139e-28!GO:0019866;organelle inner membrane;2.02647535430779e-28!GO:0046907;intracellular transport;6.34395176993592e-27!GO:0005743;mitochondrial inner membrane;6.4320248223538e-27!GO:0008380;RNA splicing;9.750414920477e-27!GO:0065003;macromolecular complex assembly;1.12834501090583e-26!GO:0006886;intracellular protein transport;3.55950312298859e-25!GO:0006397;mRNA processing;8.61748884071551e-25!GO:0022607;cellular component assembly;2.31765968253195e-24!GO:0006119;oxidative phosphorylation;1.04479066774642e-22!GO:0006996;organelle organization and biogenesis;1.76545714198067e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.13883977548794e-22!GO:0043228;non-membrane-bound organelle;1.02703954563161e-21!GO:0043232;intracellular non-membrane-bound organelle;1.02703954563161e-21!GO:0044455;mitochondrial membrane part;3.02550348307827e-21!GO:0044445;cytosolic part;5.33931191975039e-21!GO:0005783;endoplasmic reticulum;1.50691197554431e-20!GO:0015935;small ribosomal subunit;1.52560078378714e-20!GO:0031980;mitochondrial lumen;1.66299114137009e-20!GO:0005759;mitochondrial matrix;1.66299114137009e-20!GO:0015934;large ribosomal subunit;6.99551481531504e-20!GO:0005654;nucleoplasm;3.67024932547797e-19!GO:0005681;spliceosome;1.78978358582382e-18!GO:0005746;mitochondrial respiratory chain;3.07238817489277e-18!GO:0051186;cofactor metabolic process;4.31287618563405e-18!GO:0006457;protein folding;7.28082400324241e-18!GO:0048770;pigment granule;1.11804305426793e-17!GO:0042470;melanosome;1.11804305426793e-17!GO:0012505;endomembrane system;1.28909471095482e-17!GO:0044432;endoplasmic reticulum part;6.09014565785075e-17!GO:0008134;transcription factor binding;8.3654837869375e-17!GO:0044451;nucleoplasm part;1.05145545897004e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.51822506580955e-16!GO:0003676;nucleic acid binding;5.01783279022518e-16!GO:0051649;establishment of cellular localization;8.10494738145432e-16!GO:0005794;Golgi apparatus;9.66644301000801e-16!GO:0051641;cellular localization;1.20881780331344e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.34876111725847e-15!GO:0003954;NADH dehydrogenase activity;1.34876111725847e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.34876111725847e-15!GO:0022618;protein-RNA complex assembly;3.26577967521516e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.45732479376738e-15!GO:0005761;mitochondrial ribosome;5.15761370962328e-15!GO:0000313;organellar ribosome;5.15761370962328e-15!GO:0016874;ligase activity;7.83787322097141e-15!GO:0016070;RNA metabolic process;1.11444847846589e-14!GO:0006732;coenzyme metabolic process;5.25447135103648e-14!GO:0043285;biopolymer catabolic process;5.75377790784349e-14!GO:0000502;proteasome complex (sensu Eukaryota);7.62409203248309e-14!GO:0006605;protein targeting;8.37887804724349e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.50641279621194e-14!GO:0030964;NADH dehydrogenase complex (quinone);8.89213295032301e-14!GO:0045271;respiratory chain complex I;8.89213295032301e-14!GO:0005747;mitochondrial respiratory chain complex I;8.89213295032301e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.06329110658458e-13!GO:0042773;ATP synthesis coupled electron transport;1.06329110658458e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.13111426455252e-13!GO:0016462;pyrophosphatase activity;1.52385032098095e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.63083863814951e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;1.97571778083112e-13!GO:0006512;ubiquitin cycle;2.14008851423914e-13!GO:0006259;DNA metabolic process;2.35236048421332e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.77814713706488e-13!GO:0044265;cellular macromolecule catabolic process;4.07568787587324e-13!GO:0008135;translation factor activity, nucleic acid binding;6.24976414271153e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.09375089721827e-12!GO:0017111;nucleoside-triphosphatase activity;1.50308020479264e-12!GO:0005793;ER-Golgi intermediate compartment;1.5926966312483e-12!GO:0009057;macromolecule catabolic process;1.92513938743695e-12!GO:0019941;modification-dependent protein catabolic process;2.16675860726443e-12!GO:0043632;modification-dependent macromolecule catabolic process;2.16675860726443e-12!GO:0044248;cellular catabolic process;2.19475870979414e-12!GO:0048193;Golgi vesicle transport;2.28072197501272e-12!GO:0044257;cellular protein catabolic process;2.51754100054505e-12!GO:0006511;ubiquitin-dependent protein catabolic process;2.65351261024346e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.96075964688153e-12!GO:0030163;protein catabolic process;3.75963854282067e-12!GO:0005730;nucleolus;4.74403891586982e-12!GO:0005789;endoplasmic reticulum membrane;4.94020338394463e-12!GO:0051082;unfolded protein binding;1.09566993198532e-11!GO:0000166;nucleotide binding;1.20211866707504e-11!GO:0016192;vesicle-mediated transport;1.78100198560476e-11!GO:0009055;electron carrier activity;2.20239760263685e-11!GO:0016491;oxidoreductase activity;3.45072438217831e-11!GO:0003743;translation initiation factor activity;1.81211303745792e-10!GO:0006163;purine nucleotide metabolic process;3.448012276254e-10!GO:0003712;transcription cofactor activity;4.23998095066007e-10!GO:0009150;purine ribonucleotide metabolic process;4.33561180291109e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;5.49694243156905e-10!GO:0000375;RNA splicing, via transesterification reactions;5.49694243156905e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.49694243156905e-10!GO:0006413;translational initiation;5.54177508223363e-10!GO:0009259;ribonucleotide metabolic process;6.77231934652862e-10!GO:0012501;programmed cell death;8.21920532006418e-10!GO:0006446;regulation of translational initiation;8.31447042479954e-10!GO:0006164;purine nucleotide biosynthetic process;1.06696394044032e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.15855988454026e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.26038381673345e-09!GO:0006915;apoptosis;1.78459759273786e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.43454200988081e-09!GO:0009060;aerobic respiration;2.78695812672272e-09!GO:0051188;cofactor biosynthetic process;2.84341503178783e-09!GO:0043412;biopolymer modification;3.99329658507565e-09!GO:0009260;ribonucleotide biosynthetic process;4.70437335932639e-09!GO:0050794;regulation of cellular process;5.8693059686614e-09!GO:0048523;negative regulation of cellular process;7.26673120413308e-09!GO:0008219;cell death;7.45781634682755e-09!GO:0016265;death;7.45781634682755e-09!GO:0045333;cellular respiration;8.96030202184219e-09!GO:0017038;protein import;8.96030202184219e-09!GO:0008639;small protein conjugating enzyme activity;1.02860367690117e-08!GO:0006366;transcription from RNA polymerase II promoter;1.06093285716894e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.08713738683647e-08!GO:0016604;nuclear body;1.27323923160374e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.38276897351642e-08!GO:0008565;protein transporter activity;1.38276897351642e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.38276897351642e-08!GO:0009144;purine nucleoside triphosphate metabolic process;1.38276897351642e-08!GO:0006913;nucleocytoplasmic transport;1.38276897351642e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.58738987233263e-08!GO:0004842;ubiquitin-protein ligase activity;2.0894231344003e-08!GO:0009141;nucleoside triphosphate metabolic process;2.56727485174273e-08!GO:0009056;catabolic process;2.77224060342776e-08!GO:0015986;ATP synthesis coupled proton transport;2.96936463587912e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.96936463587912e-08!GO:0051169;nuclear transport;3.58865241467948e-08!GO:0006464;protein modification process;4.17853684553566e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;4.77822405827208e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.14793727009692e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.14793727009692e-08!GO:0009117;nucleotide metabolic process;5.52151461227868e-08!GO:0009142;nucleoside triphosphate biosynthetic process;6.06466029202028e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.06466029202028e-08!GO:0007049;cell cycle;8.38983495288036e-08!GO:0019787;small conjugating protein ligase activity;8.8430443835671e-08!GO:0042254;ribosome biogenesis and assembly;1.01465287156751e-07!GO:0019829;cation-transporting ATPase activity;1.03455887613783e-07!GO:0006091;generation of precursor metabolites and energy;1.07237595706662e-07!GO:0017076;purine nucleotide binding;1.1500386349997e-07!GO:0046034;ATP metabolic process;1.352975322889e-07!GO:0005635;nuclear envelope;1.47809102316353e-07!GO:0006323;DNA packaging;1.5737204018932e-07!GO:0005768;endosome;1.76035392746691e-07!GO:0006099;tricarboxylic acid cycle;1.99358456517179e-07!GO:0046356;acetyl-CoA catabolic process;1.99358456517179e-07!GO:0048519;negative regulation of biological process;1.99358456517179e-07!GO:0006461;protein complex assembly;2.16024560855715e-07!GO:0050789;regulation of biological process;2.31091520881731e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.33984217074934e-07!GO:0032553;ribonucleotide binding;2.33984217074934e-07!GO:0032555;purine ribonucleotide binding;2.33984217074934e-07!GO:0030120;vesicle coat;2.33984217074934e-07!GO:0030662;coated vesicle membrane;2.33984217074934e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.54098913393928e-07!GO:0009108;coenzyme biosynthetic process;2.68775831345251e-07!GO:0065004;protein-DNA complex assembly;2.71458362602444e-07!GO:0051246;regulation of protein metabolic process;3.13820696293829e-07!GO:0048475;coated membrane;3.13820696293829e-07!GO:0030117;membrane coat;3.13820696293829e-07!GO:0005773;vacuole;3.19107222412818e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.23363836112378e-07!GO:0031965;nuclear membrane;3.46803987379225e-07!GO:0006754;ATP biosynthetic process;4.19109082967287e-07!GO:0006753;nucleoside phosphate metabolic process;4.19109082967287e-07!GO:0006084;acetyl-CoA metabolic process;5.95887607497381e-07!GO:0005839;proteasome core complex (sensu Eukaryota);6.99643451280223e-07!GO:0051187;cofactor catabolic process;7.15062359899448e-07!GO:0003924;GTPase activity;8.77684427908706e-07!GO:0015980;energy derivation by oxidation of organic compounds;1.01017798208081e-06!GO:0005770;late endosome;1.01017798208081e-06!GO:0005788;endoplasmic reticulum lumen;1.04252745995791e-06!GO:0043687;post-translational protein modification;1.08689663228229e-06!GO:0016881;acid-amino acid ligase activity;1.12767541854631e-06!GO:0009109;coenzyme catabolic process;1.13097842243791e-06!GO:0016607;nuclear speck;1.64390979640972e-06!GO:0044431;Golgi apparatus part;1.85409237478559e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.13029136884115e-06!GO:0004812;aminoacyl-tRNA ligase activity;2.13029136884115e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.13029136884115e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.14064765823267e-06!GO:0006399;tRNA metabolic process;2.24643969447499e-06!GO:0051276;chromosome organization and biogenesis;2.35538150291864e-06!GO:0007005;mitochondrion organization and biogenesis;2.37974866471733e-06!GO:0044453;nuclear membrane part;2.54571714233553e-06!GO:0042981;regulation of apoptosis;2.70954470235581e-06!GO:0043067;regulation of programmed cell death;2.7804345832787e-06!GO:0045259;proton-transporting ATP synthase complex;3.20445380623928e-06!GO:0000323;lytic vacuole;3.5384990067176e-06!GO:0005764;lysosome;3.5384990067176e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.64252197975633e-06!GO:0030532;small nuclear ribonucleoprotein complex;3.6481615699442e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.68725226794774e-06!GO:0043069;negative regulation of programmed cell death;3.86287521656445e-06!GO:0043038;amino acid activation;3.87060332827326e-06!GO:0006418;tRNA aminoacylation for protein translation;3.87060332827326e-06!GO:0043039;tRNA aminoacylation;3.87060332827326e-06!GO:0031988;membrane-bound vesicle;4.2027180701909e-06!GO:0042623;ATPase activity, coupled;4.3010010083028e-06!GO:0045786;negative regulation of progression through cell cycle;4.81675187824325e-06!GO:0006974;response to DNA damage stimulus;4.98004097693733e-06!GO:0008361;regulation of cell size;4.98812896981701e-06!GO:0043066;negative regulation of apoptosis;5.01913237140937e-06!GO:0008654;phospholipid biosynthetic process;5.11775496595804e-06!GO:0051170;nuclear import;5.24296692124385e-06!GO:0000151;ubiquitin ligase complex;5.35878909597137e-06!GO:0005762;mitochondrial large ribosomal subunit;5.36180746647723e-06!GO:0000315;organellar large ribosomal subunit;5.36180746647723e-06!GO:0022402;cell cycle process;5.8087289844787e-06!GO:0031252;leading edge;5.83107982711333e-06!GO:0016049;cell growth;5.87364216047428e-06!GO:0006606;protein import into nucleus;6.21172916690443e-06!GO:0004298;threonine endopeptidase activity;6.38062265029735e-06!GO:0051726;regulation of cell cycle;6.4115941760786e-06!GO:0000074;regulation of progression through cell cycle;6.70299161279592e-06!GO:0044440;endosomal part;7.22130841987076e-06!GO:0010008;endosome membrane;7.22130841987076e-06!GO:0016887;ATPase activity;7.24465498512813e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.46443633879645e-06!GO:0003713;transcription coactivator activity;7.46443633879645e-06!GO:0016563;transcription activator activity;8.15795593214184e-06!GO:0001558;regulation of cell growth;1.03264085799826e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.10307761814511e-05!GO:0031982;vesicle;1.1173164831393e-05!GO:0031410;cytoplasmic vesicle;1.13248374696183e-05!GO:0006333;chromatin assembly or disassembly;1.15123801863534e-05!GO:0043566;structure-specific DNA binding;1.27439399242638e-05!GO:0006916;anti-apoptosis;1.27453776662862e-05!GO:0016853;isomerase activity;1.54558288592627e-05!GO:0065002;intracellular protein transport across a membrane;1.65489753510715e-05!GO:0016564;transcription repressor activity;1.78644781636828e-05!GO:0031324;negative regulation of cellular metabolic process;1.88562050937859e-05!GO:0030036;actin cytoskeleton organization and biogenesis;2.11784265155268e-05!GO:0032446;protein modification by small protein conjugation;2.35508239920291e-05!GO:0005667;transcription factor complex;2.418723225417e-05!GO:0006752;group transfer coenzyme metabolic process;2.66208437163942e-05!GO:0006334;nucleosome assembly;2.75329965592593e-05!GO:0006364;rRNA processing;2.77516492829986e-05!GO:0030133;transport vesicle;2.98704909356946e-05!GO:0030554;adenyl nucleotide binding;3.17711238068872e-05!GO:0019867;outer membrane;3.32447803524331e-05!GO:0005798;Golgi-associated vesicle;3.65086652768465e-05!GO:0016859;cis-trans isomerase activity;3.67080290823332e-05!GO:0016567;protein ubiquitination;3.74343256617124e-05!GO:0016072;rRNA metabolic process;3.95901833456188e-05!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;3.98945638271757e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.39637774821934e-05!GO:0031497;chromatin assembly;4.50559607493209e-05!GO:0000245;spliceosome assembly;4.54744649890965e-05!GO:0005524;ATP binding;4.62208540548064e-05!GO:0044262;cellular carbohydrate metabolic process;4.63787399022457e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.64135768349826e-05!GO:0019843;rRNA binding;4.64135768349826e-05!GO:0031968;organelle outer membrane;4.65321691932116e-05!GO:0032559;adenyl ribonucleotide binding;5.11174182355128e-05!GO:0000278;mitotic cell cycle;5.46000093897349e-05!GO:0019222;regulation of metabolic process;6.64703489378538e-05!GO:0003697;single-stranded DNA binding;6.69793448533257e-05!GO:0016787;hydrolase activity;6.93133361508852e-05!GO:0006613;cotranslational protein targeting to membrane;7.41348422238636e-05!GO:0000139;Golgi membrane;8.29834135083871e-05!GO:0005525;GTP binding;8.35353553948252e-05!GO:0005905;coated pit;8.42299861899496e-05!GO:0009892;negative regulation of metabolic process;8.79901581200311e-05!GO:0005741;mitochondrial outer membrane;9.42992490354429e-05!GO:0005643;nuclear pore;0.000105537217240608!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000105537217240608!GO:0008026;ATP-dependent helicase activity;0.000105537217240608!GO:0009165;nucleotide biosynthetic process;0.000109211602658233!GO:0016568;chromatin modification;0.000110046125610289!GO:0030867;rough endoplasmic reticulum membrane;0.000115495768731245!GO:0003714;transcription corepressor activity;0.000117048555388216!GO:0009719;response to endogenous stimulus;0.000126015379907207!GO:0030029;actin filament-based process;0.000132111154727982!GO:0000785;chromatin;0.000137494811329699!GO:0008610;lipid biosynthetic process;0.000147446626592908!GO:0000314;organellar small ribosomal subunit;0.000150348367051936!GO:0005763;mitochondrial small ribosomal subunit;0.000150348367051936!GO:0033116;ER-Golgi intermediate compartment membrane;0.000162727482448785!GO:0004386;helicase activity;0.000191976440109101!GO:0065007;biological regulation;0.000192726325667381!GO:0005694;chromosome;0.000196322453378184!GO:0045454;cell redox homeostasis;0.000217712565836516!GO:0040008;regulation of growth;0.000231169088529574!GO:0051789;response to protein stimulus;0.000261866532233477!GO:0006986;response to unfolded protein;0.000261866532233477!GO:0043021;ribonucleoprotein binding;0.000304124400780382!GO:0046930;pore complex;0.000358433701212739!GO:0006281;DNA repair;0.000358506141132153!GO:0032561;guanyl ribonucleotide binding;0.00037187741491311!GO:0019001;guanyl nucleotide binding;0.00037187741491311!GO:0005048;signal sequence binding;0.000373631276991495!GO:0006793;phosphorus metabolic process;0.000397418865350328!GO:0006796;phosphate metabolic process;0.000397418865350328!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000402872144225512!GO:0016740;transferase activity;0.000413150451217992!GO:0008250;oligosaccharyl transferase complex;0.000432520408217308!GO:0016126;sterol biosynthetic process;0.000470716388551321!GO:0046474;glycerophospholipid biosynthetic process;0.000485094597315583!GO:0051427;hormone receptor binding;0.000511149130975936!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000550188623985014!GO:0016481;negative regulation of transcription;0.000550188623985014!GO:0005791;rough endoplasmic reticulum;0.000552604238284172!GO:0004576;oligosaccharyl transferase activity;0.000580705003640672!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000698954936806662!GO:0044427;chromosomal part;0.000699504992481116!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000737267549985017!GO:0043623;cellular protein complex assembly;0.000743180408794292!GO:0048522;positive regulation of cellular process;0.000785197802712948!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000798353021277271!GO:0019899;enzyme binding;0.000817129821816573!GO:0005769;early endosome;0.000832498206794238!GO:0051920;peroxiredoxin activity;0.000892677745463787!GO:0035257;nuclear hormone receptor binding;0.000963082755220077!GO:0004177;aminopeptidase activity;0.000984702768450057!GO:0043284;biopolymer biosynthetic process;0.000988576898091985!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.000988576898091985!GO:0015002;heme-copper terminal oxidase activity;0.000988576898091985!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.000988576898091985!GO:0004129;cytochrome-c oxidase activity;0.000988576898091985!GO:0005885;Arp2/3 protein complex;0.00100308574188886!GO:0046467;membrane lipid biosynthetic process;0.00112847369817926!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00114531821968168!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0011470074352537!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0011470074352537!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0011470074352537!GO:0030027;lamellipodium;0.00118151462936361!GO:0007243;protein kinase cascade;0.00125143207551557!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00125325175911708!GO:0006414;translational elongation;0.00126345763756157!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00132401682168543!GO:0030663;COPI coated vesicle membrane;0.00139341057431828!GO:0030126;COPI vesicle coat;0.00139341057431828!GO:0050657;nucleic acid transport;0.00147341481512058!GO:0051236;establishment of RNA localization;0.00147341481512058!GO:0050658;RNA transport;0.00147341481512058!GO:0016310;phosphorylation;0.00147960036993758!GO:0016044;membrane organization and biogenesis;0.00150913692813343!GO:0050662;coenzyme binding;0.00153932654625843!GO:0019752;carboxylic acid metabolic process;0.0016235118660744!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.0016235118660744!GO:0006082;organic acid metabolic process;0.00165888208917353!GO:0030176;integral to endoplasmic reticulum membrane;0.0016825516353332!GO:0018196;peptidyl-asparagine modification;0.0016825516353332!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0016825516353332!GO:0003724;RNA helicase activity;0.00174600779672428!GO:0006403;RNA localization;0.00176495348400737!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00183836944342294!GO:0043681;protein import into mitochondrion;0.00189547550384753!GO:0006979;response to oxidative stress;0.0019096361559354!GO:0016779;nucleotidyltransferase activity;0.00203924992996179!GO:0030137;COPI-coated vesicle;0.00216798033358496!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00223874655226977!GO:0022890;inorganic cation transmembrane transporter activity;0.00224806774892597!GO:0043488;regulation of mRNA stability;0.0023671909888271!GO:0043487;regulation of RNA stability;0.0023671909888271!GO:0051287;NAD binding;0.00240724573046213!GO:0006260;DNA replication;0.00248446575581773!GO:0006695;cholesterol biosynthetic process;0.00248446575581773!GO:0031902;late endosome membrane;0.0024947009966986!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00252106654267068!GO:0015399;primary active transmembrane transporter activity;0.00252106654267068!GO:0008154;actin polymerization and/or depolymerization;0.00252287335109387!GO:0003729;mRNA binding;0.0025610704044061!GO:0030132;clathrin coat of coated pit;0.00256424538284514!GO:0006612;protein targeting to membrane;0.00283491325768548!GO:0030658;transport vesicle membrane;0.00296560031719929!GO:0003899;DNA-directed RNA polymerase activity;0.00300122514921897!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00304947279891391!GO:0051329;interphase of mitotic cell cycle;0.00309508095816901!GO:0006118;electron transport;0.00364111427649392!GO:0031072;heat shock protein binding;0.00393075050378781!GO:0030118;clathrin coat;0.00400628654925789!GO:0051252;regulation of RNA metabolic process;0.00419557537275119!GO:0065009;regulation of a molecular function;0.00420302082252684!GO:0007040;lysosome organization and biogenesis;0.00436738164790138!GO:0051539;4 iron, 4 sulfur cluster binding;0.0044920011259315!GO:0051101;regulation of DNA binding;0.00451147540058474!GO:0016408;C-acyltransferase activity;0.00459590277784816!GO:0045893;positive regulation of transcription, DNA-dependent;0.00473401247681038!GO:0007033;vacuole organization and biogenesis;0.00481828208387537!GO:0045892;negative regulation of transcription, DNA-dependent;0.00491597079983649!GO:0051128;regulation of cellular component organization and biogenesis;0.00506608049616822!GO:0030134;ER to Golgi transport vesicle;0.00526222533615491!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00528394658003572!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00528394658003572!GO:0031323;regulation of cellular metabolic process;0.00538037982740765!GO:0046489;phosphoinositide biosynthetic process;0.00540333015361546!GO:0006733;oxidoreduction coenzyme metabolic process;0.00544587562876532!GO:0051087;chaperone binding;0.00549251660876976!GO:0007010;cytoskeleton organization and biogenesis;0.00557747417887452!GO:0030127;COPII vesicle coat;0.0060351528431711!GO:0012507;ER to Golgi transport vesicle membrane;0.0060351528431711!GO:0006402;mRNA catabolic process;0.00609412876750959!GO:0008092;cytoskeletal protein binding;0.00626732098625968!GO:0001726;ruffle;0.0063268618277762!GO:0006626;protein targeting to mitochondrion;0.00652343769188041!GO:0005869;dynactin complex;0.00671487125385937!GO:0045941;positive regulation of transcription;0.00702069565084857!GO:0030119;AP-type membrane coat adaptor complex;0.00703379217635371!GO:0006650;glycerophospholipid metabolic process;0.00703888711750898!GO:0051325;interphase;0.00707489477027368!GO:0007264;small GTPase mediated signal transduction;0.00710826685679243!GO:0030041;actin filament polymerization;0.0077069155438957!GO:0003690;double-stranded DNA binding;0.00772589725078467!GO:0015992;proton transport;0.00785292602213031!GO:0005813;centrosome;0.00801179847836299!GO:0006595;polyamine metabolic process;0.00801889826021353!GO:0007006;mitochondrial membrane organization and biogenesis;0.00808699568578588!GO:0048500;signal recognition particle;0.00830140346487733!GO:0030660;Golgi-associated vesicle membrane;0.00831277697624684!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00834774786536401!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00834774786536401!GO:0033043;regulation of organelle organization and biogenesis;0.00834774786536401!GO:0000786;nucleosome;0.00846321390609681!GO:0008180;signalosome;0.00862620626923849!GO:0006818;hydrogen transport;0.00873189974134199!GO:0051540;metal cluster binding;0.00873189974134199!GO:0051536;iron-sulfur cluster binding;0.00873189974134199!GO:0007050;cell cycle arrest;0.00873189974134199!GO:0017166;vinculin binding;0.00874595551961205!GO:0006509;membrane protein ectodomain proteolysis;0.00877528972710602!GO:0033619;membrane protein proteolysis;0.00877528972710602!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00897673822641287!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00904313792305356!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00917175911215551!GO:0015630;microtubule cytoskeleton;0.00921050885001476!GO:0048487;beta-tubulin binding;0.00934825039985231!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00940205344811202!GO:0006740;NADPH regeneration;0.0094589393098081!GO:0006098;pentose-phosphate shunt;0.0094589393098081!GO:0048037;cofactor binding;0.00949653436118437!GO:0030880;RNA polymerase complex;0.00951453295451372!GO:0006778;porphyrin metabolic process;0.00955872693756693!GO:0033013;tetrapyrrole metabolic process;0.00955872693756693!GO:0006769;nicotinamide metabolic process;0.0098049313972477!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00982246689469423!GO:0009967;positive regulation of signal transduction;0.00986308855279279!GO:0046483;heterocycle metabolic process;0.00988704345264447!GO:0031124;mRNA 3'-end processing;0.0101610698856765!GO:0045792;negative regulation of cell size;0.0101974758838324!GO:0006352;transcription initiation;0.0103754866026089!GO:0008139;nuclear localization sequence binding;0.0106926343110491!GO:0006350;transcription;0.0109063050494272!GO:0044255;cellular lipid metabolic process;0.0110188612747385!GO:0048471;perinuclear region of cytoplasm;0.0116310038693016!GO:0005774;vacuolar membrane;0.0117226373152877!GO:0030308;negative regulation of cell growth;0.0118827163849865!GO:0040029;regulation of gene expression, epigenetic;0.01190054183213!GO:0051028;mRNA transport;0.0119051042680414!GO:0042802;identical protein binding;0.0120294151725093!GO:0030131;clathrin adaptor complex;0.0121435939229623!GO:0009081;branched chain family amino acid metabolic process;0.0128792112358817!GO:0003746;translation elongation factor activity;0.0128986586166382!GO:0008186;RNA-dependent ATPase activity;0.0132713925123651!GO:0004860;protein kinase inhibitor activity;0.0135948213386812!GO:0048468;cell development;0.0137797809171085!GO:0044438;microbody part;0.0138785464647857!GO:0044439;peroxisomal part;0.0138785464647857!GO:0048518;positive regulation of biological process;0.014035514635208!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0140625729099158!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0144595556992887!GO:0000059;protein import into nucleus, docking;0.0145446575968193!GO:0006891;intra-Golgi vesicle-mediated transport;0.0147958250325547!GO:0031625;ubiquitin protein ligase binding;0.0150671307697411!GO:0043022;ribosome binding;0.0154718697875071!GO:0043492;ATPase activity, coupled to movement of substances;0.0156353427615642!GO:0005815;microtubule organizing center;0.0158345174726401!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0159235604044869!GO:0006839;mitochondrial transport;0.0161065795078697!GO:0006643;membrane lipid metabolic process;0.0163465485026339!GO:0031529;ruffle organization and biogenesis;0.0168842438117525!GO:0022403;cell cycle phase;0.0169334145828208!GO:0006383;transcription from RNA polymerase III promoter;0.0169801121579475!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0170426205898964!GO:0045047;protein targeting to ER;0.0170426205898964!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0173358518846463!GO:0010468;regulation of gene expression;0.0173808855451735!GO:0006635;fatty acid beta-oxidation;0.0175677913013376!GO:0030521;androgen receptor signaling pathway;0.0175677913013376!GO:0033673;negative regulation of kinase activity;0.0180853529312349!GO:0006469;negative regulation of protein kinase activity;0.0180853529312349!GO:0005581;collagen;0.018355407194642!GO:0051098;regulation of binding;0.0184485495681225!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0184485495681225!GO:0000428;DNA-directed RNA polymerase complex;0.0184485495681225!GO:0019362;pyridine nucleotide metabolic process;0.018535795742544!GO:0042168;heme metabolic process;0.018575634020692!GO:0031903;microbody membrane;0.018575634020692!GO:0005778;peroxisomal membrane;0.018575634020692!GO:0008632;apoptotic program;0.0188324848160135!GO:0031272;regulation of pseudopodium formation;0.0188324848160135!GO:0031269;pseudopodium formation;0.0188324848160135!GO:0031344;regulation of cell projection organization and biogenesis;0.0188324848160135!GO:0031268;pseudopodium organization and biogenesis;0.0188324848160135!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0188324848160135!GO:0031274;positive regulation of pseudopodium formation;0.0188324848160135!GO:0003711;transcription elongation regulator activity;0.0189939354897562!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0190190805827773!GO:0005777;peroxisome;0.0194146862206223!GO:0042579;microbody;0.0194146862206223!GO:0006779;porphyrin biosynthetic process;0.0195144331320699!GO:0033014;tetrapyrrole biosynthetic process;0.0195144331320699!GO:0008312;7S RNA binding;0.0196159145419236!GO:0006892;post-Golgi vesicle-mediated transport;0.0196228254269728!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0199698224907465!GO:0003702;RNA polymerase II transcription factor activity;0.0201753966402926!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0202901271339397!GO:0010257;NADH dehydrogenase complex assembly;0.0202901271339397!GO:0033108;mitochondrial respiratory chain complex assembly;0.0202901271339397!GO:0006401;RNA catabolic process;0.0203172709498399!GO:0006066;alcohol metabolic process;0.0204548594701298!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0204991010536917!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0207267950817016!GO:0050811;GABA receptor binding;0.0207267950817016!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0211214534282319!GO:0016125;sterol metabolic process;0.0213669046511796!GO:0031543;peptidyl-proline dioxygenase activity;0.0218275535968105!GO:0006289;nucleotide-excision repair;0.0221690550824951!GO:0042158;lipoprotein biosynthetic process;0.0221690550824951!GO:0006506;GPI anchor biosynthetic process;0.022557141159218!GO:0006739;NADP metabolic process;0.0225748071059184!GO:0005637;nuclear inner membrane;0.0227538043356305!GO:0008637;apoptotic mitochondrial changes;0.0239617307648166!GO:0016407;acetyltransferase activity;0.0241539295093213!GO:0030659;cytoplasmic vesicle membrane;0.0244656925487319!GO:0031418;L-ascorbic acid binding;0.0245451327624958!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0246644980501362!GO:0004784;superoxide dismutase activity;0.0246644980501362!GO:0051348;negative regulation of transferase activity;0.0246644980501362!GO:0006629;lipid metabolic process;0.0249440463302245!GO:0051059;NF-kappaB binding;0.0249717919300626!GO:0030833;regulation of actin filament polymerization;0.0249849122416375!GO:0035035;histone acetyltransferase binding;0.0252727000493917!GO:0044437;vacuolar part;0.0252727000493917!GO:0005862;muscle thin filament tropomyosin;0.0257147644735693!GO:0000087;M phase of mitotic cell cycle;0.0258297190328093!GO:0005811;lipid particle;0.0258951024592819!GO:0051168;nuclear export;0.0260522524207509!GO:0007067;mitosis;0.0263090582147263!GO:0006644;phospholipid metabolic process;0.0264088318446094!GO:0006505;GPI anchor metabolic process;0.0270991482899389!GO:0045926;negative regulation of growth;0.0271102530874378!GO:0022408;negative regulation of cell-cell adhesion;0.0273878963944022!GO:0005684;U2-dependent spliceosome;0.0274985036205971!GO:0001953;negative regulation of cell-matrix adhesion;0.027561546802805!GO:0005832;chaperonin-containing T-complex;0.0288060037973464!GO:0004004;ATP-dependent RNA helicase activity;0.0288522741678708!GO:0008629;induction of apoptosis by intracellular signals;0.0288721501288336!GO:0030199;collagen fibril organization;0.0292046511942233!GO:0019798;procollagen-proline dioxygenase activity;0.0292131011775725!GO:0030031;cell projection biogenesis;0.029267064301727!GO:0007034;vacuolar transport;0.0292989098598248!GO:0008147;structural constituent of bone;0.0295598790200273!GO:0008286;insulin receptor signaling pathway;0.0296099113622425!GO:0016584;nucleosome positioning;0.0296099113622425!GO:0032507;maintenance of cellular protein localization;0.0298452866734538!GO:0016197;endosome transport;0.0303048977744474!GO:0030125;clathrin vesicle coat;0.030461863011918!GO:0030665;clathrin coated vesicle membrane;0.030461863011918!GO:0045936;negative regulation of phosphate metabolic process;0.0306443905940147!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0314082483243639!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0314082483243639!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0319345673745014!GO:0030832;regulation of actin filament length;0.0322796071012679!GO:0035258;steroid hormone receptor binding;0.0322948358895608!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0325777066064786!GO:0000209;protein polyubiquitination;0.0326939532054729!GO:0006497;protein amino acid lipidation;0.0328797911086083!GO:0051235;maintenance of localization;0.0330930874486562!GO:0005765;lysosomal membrane;0.0332306762016523!GO:0045045;secretory pathway;0.0332441294369821!GO:0000339;RNA cap binding;0.0332568767940902!GO:0032535;regulation of cellular component size;0.033613496765368!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.034455593913337!GO:0000049;tRNA binding;0.0350706979489065!GO:0006417;regulation of translation;0.035280231509765!GO:0005100;Rho GTPase activator activity;0.0353754363748888!GO:0043433;negative regulation of transcription factor activity;0.0355261114605813!GO:0000082;G1/S transition of mitotic cell cycle;0.03613624186261!GO:0033559;unsaturated fatty acid metabolic process;0.0362812665397308!GO:0006636;unsaturated fatty acid biosynthetic process;0.0362812665397308!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0363705702772396!GO:0006897;endocytosis;0.0372644762328647!GO:0010324;membrane invagination;0.0372644762328647!GO:0006783;heme biosynthetic process;0.0373969269721025!GO:0009116;nucleoside metabolic process;0.0375559552768754!GO:0000096;sulfur amino acid metabolic process;0.0375559552768754!GO:0009303;rRNA transcription;0.0379689153092804!GO:0016363;nuclear matrix;0.0395813979768285!GO:0030032;lamellipodium biogenesis;0.039698826054964!GO:0015631;tubulin binding;0.0398018744347896!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0403313819028755!GO:0046813;virion attachment, binding of host cell surface receptor;0.0403313819028755!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0403313819028755!GO:0006354;RNA elongation;0.040367886768016!GO:0016860;intramolecular oxidoreductase activity;0.0403787768352336!GO:0043414;biopolymer methylation;0.0403787768352336!GO:0005520;insulin-like growth factor binding;0.0411127704108584!GO:0045185;maintenance of protein localization;0.0414904980042881!GO:0030384;phosphoinositide metabolic process;0.041659123250838!GO:0006790;sulfur metabolic process;0.041659123250838!GO:0000030;mannosyltransferase activity;0.0418763101556244!GO:0031301;integral to organelle membrane;0.0426020517385072!GO:0030145;manganese ion binding;0.0426430646803105!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0426682611993416!GO:0030518;steroid hormone receptor signaling pathway;0.0432055584248756!GO:0000118;histone deacetylase complex;0.0436573475443928!GO:0003923;GPI-anchor transamidase activity;0.0438096497681238!GO:0016255;attachment of GPI anchor to protein;0.0438096497681238!GO:0042765;GPI-anchor transamidase complex;0.0438096497681238!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0438469322550011!GO:0045930;negative regulation of progression through mitotic cell cycle;0.0438539780968447!GO:0017134;fibroblast growth factor binding;0.044200377300502!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0444063490057937!GO:0003756;protein disulfide isomerase activity;0.0445170978481255!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0445170978481255!GO:0046426;negative regulation of JAK-STAT cascade;0.0450610042012246!GO:0046822;regulation of nucleocytoplasmic transport;0.045603452313092!GO:0005586;collagen type III;0.0460992031857599!GO:0006376;mRNA splice site selection;0.0461708708885748!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0461708708885748!GO:0031901;early endosome membrane;0.047561214083025!GO:0031123;RNA 3'-end processing;0.0480086781565414!GO:0005583;fibrillar collagen;0.0484523341681668!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0486570312997465!GO:0005975;carbohydrate metabolic process;0.0487966707684331!GO:0032906;transforming growth factor-beta2 production;0.0491740345901759!GO:0032909;regulation of transforming growth factor-beta2 production;0.0491740345901759!GO:0044433;cytoplasmic vesicle part;0.04987882535004
|sample_id=11409
|sample_id=11409
|sample_note=
|sample_note=
Line 76: Line 99:
|sample_tissue=spinal cord
|sample_tissue=spinal cord
|top_motifs=GZF1:2.15043104841;RXR{A,B,G}:2.12694799119;EBF1:1.89299892599;NR6A1:1.7697561009;ATF6:1.51165505976;ZNF423:1.45905601871;TFAP4:1.39236708954;TAL1_TCF{3,4,12}:1.33143267141;ZBTB6:1.32920468579;NR3C1:1.30575447619;GLI1..3:1.27203459694;ZNF238:1.26408803354;UFEwm:1.24297296319;NR1H4:1.16393824599;GFI1B:1.15105676191;FOXD3:1.0583632945;XBP1:1.03257951262;PAX5:1.02488688797;ESR1:1.01769490388;NANOG{mouse}:1.00317858856;KLF4:0.980651021494;TFCP2:0.973515722039;HOX{A5,B5}:0.96176068927;ZIC1..3:0.960589215892;FOXL1:0.893583451427;GTF2A1,2:0.862551123395;NKX6-1,2:0.855692088931;PATZ1:0.849196186095;SPZ1:0.836266476568;ALX4:0.831131692554;NKX2-1,4:0.814902644474;TLX1..3_NFIC{dimer}:0.791084024161;EN1,2:0.72906952638;HES1:0.716927502502;PAX1,9:0.699501981736;DBP:0.636524426692;SRF:0.609792750846;TEAD1:0.596225249247;IKZF1:0.593324106679;GTF2I:0.57762883274;MYBL2:0.562003012744;PPARG:0.549051847023;AR:0.527406495599;NFE2L1:0.523723934271;STAT2,4,6:0.521692845938;MZF1:0.514083528836;NKX2-2,8:0.495187601862;NFIX:0.489529849492;TBP:0.477144757686;MYFfamily:0.473964990953;PAX4:0.456915135377;AIRE:0.455682645673;ONECUT1,2:0.43854796673;RREB1:0.420268804285;ZNF384:0.400417114518;NKX2-3_NKX2-5:0.392412277913;DMAP1_NCOR{1,2}_SMARC:0.390884935327;YY1:0.38480822357;MAZ:0.380058702718;SMAD1..7,9:0.365529439968;TFAP2{A,C}:0.353554166234;TEF:0.347096878419;NFATC1..3:0.342473253178;MTF1:0.335451359111;NHLH1,2:0.312515668088;HMX1:0.303479250538;HIC1:0.30265284726;T:0.275112597012;HOX{A4,D4}:0.27127367747;MAFB:0.252056532684;FOXQ1:0.234146043169;TOPORS:0.228714523452;HAND1,2:0.220614169297;RXRA_VDR{dimer}:0.219349388563;AHR_ARNT_ARNT2:0.214612065886;GFI1:0.214313242922;SOX17:0.173581015201;EVI1:0.173269377962;LHX3,4:0.157566776646;SOX5:0.155978733721;FOXO1,3,4:0.146154624948;GCM1,2:0.140265111069;ADNP_IRX_SIX_ZHX:0.134562774529;HNF4A_NR2F1,2:0.130929043532;POU6F1:0.127239174054;SP1:0.106069172494;MED-1{core}:0.0918717670553;RUNX1..3:0.0904379043594;PRDM1:0.090269246624;STAT5{A,B}:0.0851423913651;NKX3-1:0.0810836516337;STAT1,3:0.0738514612012;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0711764134068;HNF1A:0.0615531304273;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.031565259951;GATA4:0.0230074889126;POU2F1..3:-0.00509253781078;REST:-0.0107885486988;TP53:-0.0161118976513;BACH2:-0.0182747014531;SREBF1,2:-0.0261626559292;POU3F1..4:-0.026985169603;MEF2{A,B,C,D}:-0.0317132212821;ESRRA:-0.0357418375921;RBPJ:-0.0403240692901;RFX1:-0.0618095950798;NFE2L2:-0.0957839584113;PDX1:-0.110828799443;NFE2:-0.116667392127;BPTF:-0.12798913339;ZNF148:-0.133155988693;TFAP2B:-0.140691760114;ARID5B:-0.159610127571;NR5A1,2:-0.160741222325;EGR1..3:-0.161493713775;bHLH_family:-0.172612907798;TGIF1:-0.182661679208;PAX8:-0.18666043698;FOSL2:-0.198383171788;MTE{core}:-0.208756789299;HLF:-0.216079242893;PRRX1,2:-0.226889838522;RORA:-0.230028345907;ZNF143:-0.259547601643;LEF1_TCF7_TCF7L1,2:-0.271402458467;FOS_FOS{B,L1}_JUN{B,D}:-0.287456430254;LMO2:-0.311088133992;PBX1:-0.316646732549;TBX4,5:-0.336109088731;IKZF2:-0.338709557574;NFKB1_REL_RELA:-0.350602256479;ZFP161:-0.421075012193;JUN:-0.423553831492;NKX3-2:-0.435644806067;HBP1_HMGB_SSRP1_UBTF:-0.446560597444;XCPE1{core}:-0.453284023659;FOXP3:-0.462771587276;POU1F1:-0.476584325645;FOXN1:-0.479582316541;PAX3,7:-0.483819593758;CDC5L:-0.49977306861;CEBPA,B_DDIT3:-0.503906318151;FOX{D1,D2}:-0.517746922106;SOX2:-0.553193223831;GATA6:-0.566737778304;ZEB1:-0.570184584702;HOX{A6,A7,B6,B7}:-0.571444374734;ETS1,2:-0.57753513442;CDX1,2,4:-0.579891893039;RFX2..5_RFXANK_RFXAP:-0.585218692993;SNAI1..3:-0.586379049393;SPI1:-0.59918145838;IRF1,2:-0.600643336009;HOXA9_MEIS1:-0.611130654935;SOX{8,9,10}:-0.627423657671;IRF7:-0.635991145177;FOX{I1,J2}:-0.636062651272;MYOD1:-0.658760435011;FOXM1:-0.669113215655;NRF1:-0.675266774868;HIF1A:-0.702244568948;NFIL3:-0.705349598562;ZBTB16:-0.70740794457;CUX2:-0.707673731418;SPIB:-0.714145025481;PAX2:-0.718674701926;FOX{F1,F2,J1}:-0.734577069579;ELK1,4_GABP{A,B1}:-0.738259469778;ALX1:-0.811638381043;CREB1:-0.819764897482;ATF4:-0.823984217615;VSX1,2:-0.888352169693;ELF1,2,4:-0.916453573871;MYB:-0.931031014522;FOXP1:-0.936654220573;HSF1,2:-0.937535201455;BREu{core}:-0.961932192549;E2F1..5:-0.975323692849;TFDP1:-0.99144260311;ATF5_CREB3:-0.996867692498;NFY{A,B,C}:-0.997012078748;PAX6:-1.02776437482;HMGA1,2:-1.04649624342;ATF2:-1.10970859088;NANOG:-1.15743391927;POU5F1:-1.15816069775;OCT4_SOX2{dimer}:-1.20865530488;EP300:-1.21088758667;FOXA2:-1.2682666672;CRX:-1.40591869532;PITX1..3:-1.49882001165;TLX2:-1.78689209281
|top_motifs=GZF1:2.15043104841;RXR{A,B,G}:2.12694799119;EBF1:1.89299892599;NR6A1:1.7697561009;ATF6:1.51165505976;ZNF423:1.45905601871;TFAP4:1.39236708954;TAL1_TCF{3,4,12}:1.33143267141;ZBTB6:1.32920468579;NR3C1:1.30575447619;GLI1..3:1.27203459694;ZNF238:1.26408803354;UFEwm:1.24297296319;NR1H4:1.16393824599;GFI1B:1.15105676191;FOXD3:1.0583632945;XBP1:1.03257951262;PAX5:1.02488688797;ESR1:1.01769490388;NANOG{mouse}:1.00317858856;KLF4:0.980651021494;TFCP2:0.973515722039;HOX{A5,B5}:0.96176068927;ZIC1..3:0.960589215892;FOXL1:0.893583451427;GTF2A1,2:0.862551123395;NKX6-1,2:0.855692088931;PATZ1:0.849196186095;SPZ1:0.836266476568;ALX4:0.831131692554;NKX2-1,4:0.814902644474;TLX1..3_NFIC{dimer}:0.791084024161;EN1,2:0.72906952638;HES1:0.716927502502;PAX1,9:0.699501981736;DBP:0.636524426692;SRF:0.609792750846;TEAD1:0.596225249247;IKZF1:0.593324106679;GTF2I:0.57762883274;MYBL2:0.562003012744;PPARG:0.549051847023;AR:0.527406495599;NFE2L1:0.523723934271;STAT2,4,6:0.521692845938;MZF1:0.514083528836;NKX2-2,8:0.495187601862;NFIX:0.489529849492;TBP:0.477144757686;MYFfamily:0.473964990953;PAX4:0.456915135377;AIRE:0.455682645673;ONECUT1,2:0.43854796673;RREB1:0.420268804285;ZNF384:0.400417114518;NKX2-3_NKX2-5:0.392412277913;DMAP1_NCOR{1,2}_SMARC:0.390884935327;YY1:0.38480822357;MAZ:0.380058702718;SMAD1..7,9:0.365529439968;TFAP2{A,C}:0.353554166234;TEF:0.347096878419;NFATC1..3:0.342473253178;MTF1:0.335451359111;NHLH1,2:0.312515668088;HMX1:0.303479250538;HIC1:0.30265284726;T:0.275112597012;HOX{A4,D4}:0.27127367747;MAFB:0.252056532684;FOXQ1:0.234146043169;TOPORS:0.228714523452;HAND1,2:0.220614169297;RXRA_VDR{dimer}:0.219349388563;AHR_ARNT_ARNT2:0.214612065886;GFI1:0.214313242922;SOX17:0.173581015201;EVI1:0.173269377962;LHX3,4:0.157566776646;SOX5:0.155978733721;FOXO1,3,4:0.146154624948;GCM1,2:0.140265111069;ADNP_IRX_SIX_ZHX:0.134562774529;HNF4A_NR2F1,2:0.130929043532;POU6F1:0.127239174054;SP1:0.106069172494;MED-1{core}:0.0918717670553;RUNX1..3:0.0904379043594;PRDM1:0.090269246624;STAT5{A,B}:0.0851423913651;NKX3-1:0.0810836516337;STAT1,3:0.0738514612012;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0711764134068;HNF1A:0.0615531304273;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.031565259951;GATA4:0.0230074889126;POU2F1..3:-0.00509253781078;REST:-0.0107885486988;TP53:-0.0161118976513;BACH2:-0.0182747014531;SREBF1,2:-0.0261626559292;POU3F1..4:-0.026985169603;MEF2{A,B,C,D}:-0.0317132212821;ESRRA:-0.0357418375921;RBPJ:-0.0403240692901;RFX1:-0.0618095950798;NFE2L2:-0.0957839584113;PDX1:-0.110828799443;NFE2:-0.116667392127;BPTF:-0.12798913339;ZNF148:-0.133155988693;TFAP2B:-0.140691760114;ARID5B:-0.159610127571;NR5A1,2:-0.160741222325;EGR1..3:-0.161493713775;bHLH_family:-0.172612907798;TGIF1:-0.182661679208;PAX8:-0.18666043698;FOSL2:-0.198383171788;MTE{core}:-0.208756789299;HLF:-0.216079242893;PRRX1,2:-0.226889838522;RORA:-0.230028345907;ZNF143:-0.259547601643;LEF1_TCF7_TCF7L1,2:-0.271402458467;FOS_FOS{B,L1}_JUN{B,D}:-0.287456430254;LMO2:-0.311088133992;PBX1:-0.316646732549;TBX4,5:-0.336109088731;IKZF2:-0.338709557574;NFKB1_REL_RELA:-0.350602256479;ZFP161:-0.421075012193;JUN:-0.423553831492;NKX3-2:-0.435644806067;HBP1_HMGB_SSRP1_UBTF:-0.446560597444;XCPE1{core}:-0.453284023659;FOXP3:-0.462771587276;POU1F1:-0.476584325645;FOXN1:-0.479582316541;PAX3,7:-0.483819593758;CDC5L:-0.49977306861;CEBPA,B_DDIT3:-0.503906318151;FOX{D1,D2}:-0.517746922106;SOX2:-0.553193223831;GATA6:-0.566737778304;ZEB1:-0.570184584702;HOX{A6,A7,B6,B7}:-0.571444374734;ETS1,2:-0.57753513442;CDX1,2,4:-0.579891893039;RFX2..5_RFXANK_RFXAP:-0.585218692993;SNAI1..3:-0.586379049393;SPI1:-0.59918145838;IRF1,2:-0.600643336009;HOXA9_MEIS1:-0.611130654935;SOX{8,9,10}:-0.627423657671;IRF7:-0.635991145177;FOX{I1,J2}:-0.636062651272;MYOD1:-0.658760435011;FOXM1:-0.669113215655;NRF1:-0.675266774868;HIF1A:-0.702244568948;NFIL3:-0.705349598562;ZBTB16:-0.70740794457;CUX2:-0.707673731418;SPIB:-0.714145025481;PAX2:-0.718674701926;FOX{F1,F2,J1}:-0.734577069579;ELK1,4_GABP{A,B1}:-0.738259469778;ALX1:-0.811638381043;CREB1:-0.819764897482;ATF4:-0.823984217615;VSX1,2:-0.888352169693;ELF1,2,4:-0.916453573871;MYB:-0.931031014522;FOXP1:-0.936654220573;HSF1,2:-0.937535201455;BREu{core}:-0.961932192549;E2F1..5:-0.975323692849;TFDP1:-0.99144260311;ATF5_CREB3:-0.996867692498;NFY{A,B,C}:-0.997012078748;PAX6:-1.02776437482;HMGA1,2:-1.04649624342;ATF2:-1.10970859088;NANOG:-1.15743391927;POU5F1:-1.15816069775;OCT4_SOX2{dimer}:-1.20865530488;EP300:-1.21088758667;FOXA2:-1.2682666672;CRX:-1.40591869532;PITX1..3:-1.49882001165;TLX2:-1.78689209281
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11409-118E5;search_select_hide=table117:FF:11409-118E5
}}
}}

Latest revision as of 17:59, 4 June 2020

Name:Nucleus Pulposus Cell, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12019
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuespinal cord
dev stageNA
sexunknown
ageNA
cell typenucleus pulposus cell of intervertebral disc
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:4797
catalog numberSC4805
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005994
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12019 CAGE DRX008382 DRR009254
Accession ID Hg19

Library idBAMCTSS
CNhs12019 DRZ000679 DRZ002064
Accession ID Hg38

Library idBAMCTSS
CNhs12019 DRZ012029 DRZ013414
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.296
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.149
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.301
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0235
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.246
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.154
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.176
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.705
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.188
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.434
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.176
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.00525
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.00192
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.329
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.176
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.544
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.477
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.497
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.133
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.477
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.903
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12019

Jaspar motifP-value
MA0002.20.698
MA0003.10.22
MA0004.10.568
MA0006.10.273
MA0007.10.165
MA0009.10.629
MA0014.10.516
MA0017.10.0782
MA0018.21.25573e-4
MA0019.10.768
MA0024.11.22021e-4
MA0025.10.00117
MA0027.10.894
MA0028.10.0177
MA0029.10.683
MA0030.10.309
MA0031.10.216
MA0035.20.381
MA0038.10.418
MA0039.20.299
MA0040.10.511
MA0041.10.348
MA0042.10.36
MA0043.11.47235e-4
MA0046.10.569
MA0047.20.895
MA0048.10.708
MA0050.14.34538e-4
MA0051.10.00546
MA0052.10.135
MA0055.10.417
MA0057.10.234
MA0058.10.552
MA0059.10.557
MA0060.13.4189e-5
MA0061.10.809
MA0062.21.74529e-7
MA0065.20.0176
MA0066.10.0735
MA0067.10.0148
MA0068.10.611
MA0069.10.221
MA0070.10.594
MA0071.10.548
MA0072.10.534
MA0073.10.392
MA0074.10.0366
MA0076.10.00108
MA0077.10.607
MA0078.10.694
MA0079.20.833
MA0080.26.20995e-7
MA0081.16.79201e-4
MA0083.10.0127
MA0084.10.212
MA0087.10.742
MA0088.10.58
MA0090.10.0261
MA0091.10.00991
MA0092.10.676
MA0093.10.462
MA0099.20.0601
MA0100.10.258
MA0101.10.0482
MA0102.20.282
MA0103.10.54
MA0104.20.228
MA0105.10.13
MA0106.10.471
MA0107.10.0473
MA0108.20.0606
MA0111.10.766
MA0112.20.0021
MA0113.10.0342
MA0114.10.166
MA0115.10.799
MA0116.10.0542
MA0117.10.229
MA0119.10.0778
MA0122.10.508
MA0124.10.29
MA0125.10.228
MA0131.10.166
MA0135.10.502
MA0136.14.28329e-11
MA0137.20.38
MA0138.20.108
MA0139.10.186
MA0140.10.127
MA0141.10.0887
MA0142.10.537
MA0143.10.168
MA0144.10.167
MA0145.10.281
MA0146.10.0493
MA0147.10.168
MA0148.10.328
MA0149.10.323
MA0150.10.0329
MA0152.10.222
MA0153.10.534
MA0154.10.0444
MA0155.10.163
MA0156.11.0212e-9
MA0157.10.385
MA0159.10.452
MA0160.10.929
MA0162.10.116
MA0163.10.00213
MA0164.10.736
MA0258.10.0485
MA0259.10.205



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12019

Novel motifP-value
10.549
100.54
1000.973
1010.612
1020.371
1030.125
1040.604
1050.719
1060.056
1070.0197
1080.36
1090.646
110.152
1100.374
1110.95
1120.588
1130.149
1140.379
1150.131
1160.0272
1170.547
1180.818
1190.62
120.201
1200.0279
1210.168
1220.0893
1230.00254
1240.521
1250.679
1260.499
1270.456
1280.0118
1290.168
130.683
1300.577
1310.239
1320.158
1330.381
1340.776
1350.563
1360.859
1370.0326
1380.438
1390.243
140.856
1400.554
1410.354
1420.692
1430.468
1440.389
1450.435
1460.29
1470.469
1480.158
1490.0173
150.76
1500.611
1510.33
1520.233
1530.855
1540.299
1550.161
1560.319
1570.945
1580.137
1590.834
160.0348
1600.0813
1610.201
1620.0087
1630.653
1640.441
1650.93
1660.174
1670.414
1680.852
1690.0395
170.473
180.351
190.0269
20.14
200.448
210.526
220.0695
230.22
240.63
250.675
260.302
270.125
280.137
290.264
30.16
300.215
310.264
322.10357e-10
330.846
340.32
350.516
360.337
370.0787
380.858
390.273
40.152
400.579
410.0981
420.851
430.255
440.0339
450.245
460.0552
470.493
480.607
490.384
50.648
500.507
510.343
520.448
530.432
540.261
550.473
560.307
570.549
580.996
590.00377
60.522
600.496
610.746
620.559
630.326
640.499
650.0887
660.367
670.914
680.2
690.00558
70.765
700.243
710.174
720.795
730.0805
740.542
750.431
760.451
770.089
780.801
790.0122
80.0619
800.243
810.557
820.0168
830.807
840.448
850.11
860.775
870.853
880.222
890.0744
90.246
900.31
910.168
920.0969
930.675
940.707
950.408
960.5
970.568
980.704
993.57099e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12019


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002564 (nucleus pulposus cell of intervertebral disc)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0011216 (organ system subdivision)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004905 (articulation)
0011135 (intervertebral cartilage)
0000075 (subdivision of skeletal system)
0002216 (symphysis)
0004765 (skeletal element)
0011134 (nonsynovial joint)
0002209 (fibrous joint)
0002213 (cartilaginous joint)
0000982 (skeletal joint)
0010317 (germ layer / neural crest derived structure)
0007844 (cartilage element)
0002242 (nucleus pulposus)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)
0011138 (post-cranial axial skeletal system)
0001130 (vertebral column)
0001066 (intervertebral disk)
0001468 (intervertebral joint)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000123 (human nucleus pulposus cell of intervertebral disc sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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