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{{f5samples
{{f5samples
|id=FF:11462-119B4
|DRA_sample_Accession=CAGE@SAMD00005335
|name=Nucleus Pulposus Cell, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005335
|sample_id=11462
|accession_numbers=CAGE;DRX008383;DRR009255;DRZ000680;DRZ002065;DRZ012030;DRZ013415
|rna_tube_id=119B4
|accession_numbers_RNASeq=sRNA-Seq;DRX037231;DRR041597;DRZ007239
|rna_box=119
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0011216,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004905,UBERON:0011135,UBERON:0000075,UBERON:0002216,UBERON:0004765,UBERON:0011134,UBERON:0002209,UBERON:0002213,UBERON:0000982,UBERON:0010317,UBERON:0007844,UBERON:0002242,UBERON:0002204,UBERON:0001434,UBERON:0004770,UBERON:0011138,UBERON:0001130,UBERON:0001066,UBERON:0001468
|rna_position=B4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002564
|sample_cell_lot=
|sample_cell_catalog=N/A
|sample_company=Sciencell
|rna_lot_number=lot:5299
|rna_catalog_number=SC4805
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=spinal cord
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=nucleus pulposus cell of intervertebral disc
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=1
|sample_note=
|profile_hcage=CNhs12063,LSID838,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10014,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000144,CL:0000255,CL:0000548,CL:0002320,CL:0002371,CL:0002564
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000468,UBERON:0000479,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0002050,UBERON:0002242,UBERON:0002328,UBERON:0002384,UBERON:0002532,UBERON:0003068,UBERON:0004120,UBERON:0004880,UBERON:0005423
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000123
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr14:61116183..61116208,-!p1@SIX1!1.58!134.28!SIX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!27.13!HOXC5;;chr7:19157248..19157268,-!p1@TWIST1!1.37!60.76!TWIST1;;chr12:66218836..66218888,+!p1@HMGA2!1.36!200.19!HMGA2;;chr17:46682321..46682362,-!p1@HOXB6!1.29!18.72!HOXB6;;chr7:27205136..27205164,-!p1@HOXA9!1.29!18.45!HOXA9;;chr6:1610293..1610310,+!p1@FOXC1!1.27!29.30!FOXC1;;chr12:66218598..66218645,+!p2@HMGA2!1.26!77.85!HMGA2;;chr7:27192185..27192209,-!p1@HOXA3!1.25!16.82!HOXA3;;chr5:158526917..158526932,-!p1@EBF1!1.22!38.52!EBF1;;chr17:46675558..46675577,-!p2@HOXB6!1.19!14.38!HOXB6;;chr2:45236540..45236577,-!p1@SIX2!1.16!13.56!SIX2;;chr12:54378923..54378966,+!p1@HOXC10!1.16!13.29!HOXC10;;chr5:92918919..92918942,+!p1@NR2F1!1.13!55.61!NR2F1;;chr7:19157043..19157088,-!p2@TWIST1!1.13!31.20!TWIST1;;chr12:66218923..66218934,+!p14@HMGA2!1.11!11.94!HMGA2;;chr6:45296048..45296082,+!p1@RUNX2!1.10!13.29!RUNX2;;chr6:134210243..134210257,+!p1@TCF21!1.10!11.66!TCF21;;chr7:27196217..27196246,-!p2@HOXA7!1.10!11.66!HOXA7;;chr12:66218255..66218304,+!p3@HMGA2!1.07!29.30!HMGA2;;chr12:54402745..54402788,+!p1@HOXC8!1.06!10.58!HOXC8;;chr12:66218904..66218913,+!p11@HMGA2!1.06!10.58!HMGA2;;chr9:132427972..132428056,+!p1@PRRX2!1.04!13.02!PRRX2;;chr3:147127142..147127168,+!p1@ZIC1!1.03!9.77!ZIC1;;chr11:46299539..46299620,+!p2@CREB3L1!1.01!15.73!CREB3L1;;chr9:77112244..77112262,+!p1@RORB!1.01!10.31!RORB;;chr12:54393880..54393962,+!p1@HOXC9!1.01!9.22!HOXC9;;chr14:37131058..37131139,+!p1@PAX9!1.01!9.22!PAX9;;chr7:15726296..15726315,-!p1@MEOX2!1.01!9.22!MEOX2;;chr16:86600426..86600441,+!p1@FOXC2!1.00!22.79!FOXC2;;chr12:54379029..54379057,+!p2@HOXC10!1.00!8.95!HOXC10;;chr2:5832508..5832524,+!p1@SOX11!1.00!8.95!SOX11;;chr7:27183263..27183284,-!p2@HOXA5!0.96!8.14!HOXA5;;chr17:46675420..46675465,-!p3@HOXB6!0.94!8.95!HOXB6;;chr3:12329397..12329433,+!p2@PPARG!0.93!17.63!PPARG;;chr17:46688334..46688385,-!p1@HOXB7!0.93!11.12!HOXB7;;chr7:15725757..15725828,-!p5@MEOX2!0.92!7.32!MEOX2;;chr7:27142290..27142310,-!p1@HOXA2!0.91!7.05!HOXA2;;chr6:34204921..34204939,+!p3@HMGA1!0.88!209.15!HMGA1;;chr7:15726243..15726293,-!p2@MEOX2!0.88!6.51!MEOX2;;chr3:147111231..147111281,+!p3@ZIC1!0.88!6.51!ZIC1;;chr12:66218212..66218244,+!p5@HMGA2!0.87!9.49!HMGA2;;chr9:132427883..132427951,+!p2@PRRX2!0.86!6.24!PRRX2;;chr12:66218183..66218209,+!p4@HMGA2!0.85!12.21!HMGA2;;chr14:61116168..61116180,-!p2@SIX1!0.85!7.05!SIX1;;chr10:131762504..131762555,-!p1@EBF3!0.84!5.97!EBF3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.83!5.70!HOXC5;;chr14:37126765..37126799,+!p2@PAX9!0.83!5.70!PAX9;;chr7:27183291..27183324,-!p1@HOXA5!0.83!5.70!HOXA5;;chr7:27205106..27205134,-!p2@HOXA9!0.83!5.70!HOXA9;;chr16:86600870..86600921,+!p2@FOXC2!0.83!5.70!FOXC2;;chr17:46667594..46667619,-!p1@HOXB3!0.83!5.70!HOXB3;;chr16:54320101..54320125,-!p4@IRX3!0.82!8.14!IRX3;;chr12:54402790..54402805,+!p2@HOXC8!0.81!5.43!HOXC8;;chr11:113930425..113930471,+!p1@ZBTB16!0.80!7.87!ZBTB16;;chr5:92919100..92919135,+!p3@NR2F1!0.80!6.51!NR2F1;;chr1:170633262..170633285,+!p3@PRRX1!0.80!6.24!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.79!5.15!CREB3L1;;chr12:54380404..54380433,+!p3@HOXC10!0.79!5.15!HOXC10;;chr17:46621146..46621180,-!p10@HOXB2!0.79!5.15!HOXB2;;chr17:46690839..46690884,-!p1@HOXB8!0.79!5.15!HOXB8;;chr11:46299199..46299233,+!p1@CREB3L1!0.78!28.48!CREB3L1;;chr5:72744594..72744609,-!p1@FOXD1!0.78!24.69!FOXD1;;chr17:59477233..59477263,+!p1@TBX2!0.78!16.82!TBX2;;chr3:12329358..12329393,+!p3@PPARG!0.78!13.29!PPARG;;chr1:170633348..170633399,+!p2@PRRX1!0.78!7.05!PRRX1;;chr3:12330560..12330579,+!p1@PPARG!0.77!5.70!PPARG;;chr2:45236579..45236596,-!p2@SIX2!0.77!4.88!SIX2;;chr3:147127177..147127194,+!p2@ZIC1!0.77!4.88!ZIC1;;chrY:21906594..21906622,-!p1@KDM5D!0.77!4.88!KDM5D;;chr5:158527104..158527135,-!p4@EBF1!0.77!4.88!EBF1;;chr8:77593750..77593757,+!p3@ZFHX4!0.77!4.88!ZFHX4;;chr6:85474299..85474324,-!p1@TBX18!0.76!8.95!TBX18;;chr19:13134772..13134822,+!p2@NFIX!0.76!7.32!NFIX;;chr17:46667628..46667642,-!p2@HOXB3!0.75!4.61!HOXB3;;chr2:119604456..119604501,-!p2@EN1!0.75!4.61!EN1;;chr10:63853479..63853496,+!p21@ARID5B!0.75!4.61!ARID5B;;chr12:66218469..66218477,+!p16@HMGA2!0.75!4.61!HMGA2;;chr21:30671690..30671762,+!p2@BACH1!0.74!16.82!BACH1;;chr5:72744445..72744466,-!p2@FOXD1!0.74!7.87!FOXD1;;chr9:16870659..16870675,-!p2@BNC2!0.74!5.70!BNC2;;chr8:49833948..49833973,-!p2@SNAI2!0.73!30.92!SNAI2;;chr16:86612320..86612394,+!p1@FOXL1!0.73!4.34!FOXL1;;chr12:54422217..54422239,+!p3@HOXC6!0.73!4.34!HOXC6;;chr19:46801639..46801699,+!p1@HIF3A!0.73!4.34!HIF3A;;chr22:19748231..19748317,+!p1@TBX1!0.73!4.34!TBX1;;chr8:48650715..48650735,-!p1@CEBPD!0.71!593.26!CEBPD;;chr6:34204672..34204692,+!p1@HMGA1!0.71!533.31!HMGA1;;chr7:44143925..44143970,+!p1@AEBP1!0.71!104.71!AEBP1;;chr5:137804484..137804498,+!p2@EGR1!0.71!18.45!EGR1;;chr17:46622070..46622109,-!p1@HOXB2!0.71!10.04!HOXB2;;chr12:66218378..66218401,+!p6@HMGA2!0.71!6.78!HMGA2;;chr5:92919375..92919438,+!p6@NR2F1!0.70!4.34!NR2F1;;chr12:115122318..115122331,-!p2@TBX3!0.70!4.07!TBX3;;chr17:46691732..46691766,-!p4@HOXB8!0.70!4.07!HOXB8;;chr5:92918894..92918912,+!p2@NR2F1!0.69!14.38!NR2F1;;chr12:66218443..66218461,+!p8@HMGA2!0.69!5.15!HMGA2;;chr11:113930401..113930422,+!p3@ZBTB16!0.68!3.80!ZBTB16;;chr8:25902876..25902936,-!p1@EBF2!0.68!3.80!EBF2;;chr8:77593474..77593612,+!p1@ZFHX4!0.67!17.63!ZFHX4;;chr7:28448965..28448994,+!p2@CREB5!0.67!14.65!CREB5;;chr12:66218573..66218596,+!p7@HMGA2!0.66!5.70!HMGA2;;chr16:54320158..54320200,-!p5@IRX3!0.66!5.43!IRX3;;chr16:54319010..54319041,-!p8@IRX3!0.66!3.53!IRX3;;chr12:54402729..54402743,+!p3@HOXC8!0.66!3.53!HOXC8;;chr12:54410948..54410992,+!p3@HOXC5!0.66!3.53!HOXC5;;chr3:147111198..147111225,+!p4@ZIC1!0.66!3.53!ZIC1;;chr7:27183114..27183138,-!p3@HOXA5!0.66!3.53!HOXA5;;chr7:27196267..27196311,-!p1@HOXA7!0.66!3.53!HOXA7;;chr15:57511609..57511651,+!p2@TCF12!0.65!6.24!TCF12;;chr16:54320617..54320643,-!p3@IRX3!0.65!4.61!IRX3;;chr3:178789522..178789564,-!p2@ZMAT3!0.64!29.03!ZMAT3;;chr17:41622925..41622976,-!p3@ETV4!0.64!5.43!ETV4;;chr16:54964740..54964789,+!p1@IRX5!0.64!5.15!IRX5;;chr19:45260775..45260838,+!p5@BCL3!0.64!4.61!BCL3;;chr5:92918956..92918969,+!p4@NR2F1!0.64!3.80!NR2F1;;chr11:47279248..47279264,+!p3@NR1H3!0.63!3.80!NR1H3;;chr12:66218420..66218439,+!p12@HMGA2!0.63!3.26!HMGA2;;chr16:86600458..86600461,+!p3@FOXC2!0.63!3.26!FOXC2;;chr3:141087454..141087465,+!p19@ZBTB38!0.63!3.26!ZBTB38;;chr12:57504975..57505019,-!p2@STAT6!0.62!15.19!STAT6;;chr9:73029219..73029289,-!p2@KLF9!0.62!11.12!KLF9;;chr19:58987711..58987729,+!p2@ZNF446!0.62!5.43!ZNF446;;chr17:41622765..41622821,-!p2@ETV4!0.62!5.15!ETV4;;chr19:49864746..49864780,-!p2@TEAD2!0.62!4.61!TEAD2;;chr12:115121962..115121987,-!p1@TBX3!0.61!31.20!TBX3;;chr14:61191018..61191048,-!p1@SIX4!0.61!7.60!SIX4;;chr7:44143978..44143989,+!p2@AEBP1!0.61!6.24!AEBP1;;chr11:113930291..113930339,+!p2@ZBTB16!0.61!5.43!ZBTB16;;chr11:46299186..46299195,+!p3@CREB3L1!0.61!3.53!CREB3L1;;chr1:59249688..59249703,-!p3@JUN!0.60!21.43!JUN;;chr7:14029283..14029311,-!p1@ETV1!0.60!18.72!ETV1;;chr2:113993052..113993097,-!p2@PAX8!0.60!7.60!PAX8;;chr16:54320646..54320672,-!p2@IRX3!0.60!4.88!IRX3;;chr17:46621101..46621143,-!p7@HOXB2!0.60!4.34!HOXB2;;chr15:67391010..67391046,+!p13@SMAD3!0.60!2.98!SMAD3;;chr17:46132044..46132080,+!p4@NFE2L1!0.60!2.98!NFE2L1;;chr12:66358080..66358094,+!p15@HMGA2!0.60!2.98!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.60!2.98!ZFY;;chr2:102091144..102091183,-!p2@RFX8!0.60!2.98!RFX8;;chr9:73028814..73028895,-!p1@KLF9!0.59!34.45!KLF9;;chr12:96588143..96588185,+!p1@ELK3!0.58!42.32!ELK3;;chr14:62162258..62162269,+!p2@HIF1A!0.57!32.55!HIF1A;;chr17:41623009..41623053,-!p4@ETV4!0.57!4.88!ETV4;;chr5:92920456..92920488,+!p9@NR2F1!0.57!3.26!NR2F1;;chr5:158524625..158524669,-!p6@EBF1!0.57!2.71!EBF1;;chr5:92919452..92919496,+!p11@NR2F1!0.57!2.71!NR2F1;;chr7:27196196..27196210,-!p5@HOXA7!0.57!2.71!HOXA7;;chr1:170632250..170632277,+!p7@PRRX1!0.57!2.71!PRRX1;;chr16:54320322..54320343,-!p7@IRX3!0.57!2.71!IRX3;;chr14:75745523..75745537,+!p1@FOS!0.56!396.32!FOS;;chr12:26277956..26277980,-!p1@BHLHE41!0.56!11.39!BHLHE41;;chr4:26322267..26322334,+!p3@RBPJ!0.56!7.32!RBPJ;;chrX:66763856..66763896,+!p1@AR!0.56!4.07!AR;;chr17:46621937..46621966,-!p2@HOXB2!0.55!8.14!HOXB2;;chr20:50179368..50179392,-!p2@NFATC2!0.55!3.53!NFATC2;;chr11:65687158..65687216,+!p4@DRAP1!0.54!17.63!DRAP1;;chr21:47063625..47063658,+!p1@PCBP3!0.54!13.29!PCBP3;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.54!2.71!GLIS1;;chr7:27183191..27183214,-!p4@HOXA5!0.54!2.44!HOXA5;;chr7:27213893..27213954,-!p1@HOXA10!0.54!2.44!HOXA10;;chr9:77112225..77112238,+!p2@RORB!0.54!2.44!RORB;;chr2:95963052..95963106,+!p1@KCNIP3!0.54!2.44!KCNIP3;;chr17:46675586..46675600,-!p6@HOXB6!0.54!2.44!HOXB6;;chr11:63684602..63684664,-!p1@RCOR2!0.53!5.43!RCOR2;;chr15:42749722..42749739,-!p2@ZFP106!0.53!4.88!ZFP106;;chr14:75746722..75746777,+!p2@FOS!0.53!3.26!FOS;;chr14:62213758..62213774,+!p8@HIF1A!0.53!3.26!HIF1A;;chr2:19558373..19558392,-!p1@OSR1!0.52!7.60!OSR1;;chr5:124082322..124082364,-!p1@ZNF608!0.52!7.05!ZNF608;;chr19:52956798..52956843,+!p1@ZNF578!0.52!5.43!ZNF578;;chr17:46687959..46688007,-!p2@HOXB7!0.52!3.53!HOXB7;;chr15:96874012..96874042,+!p2@NR2F2!0.51!26.31!NR2F2;;chr11:65687362..65687436,+!p3@DRAP1!0.51!13.02!DRAP1;;chr1:59249707..59249727,-!p1@JUN!0.50!122.34!JUN;;chr7:17338266..17338282,+!p1@AHR!0.50!30.65!AHR;;chr18:22932080..22932170,-!p1@ZNF521!0.50!11.66!ZNF521;;chr8:116681409..116681431,-!p2@TRPS1!0.50!7.32!TRPS1;;chr11:47279504..47279563,+!p1@NR1H3!0.50!5.97!NR1H3;;chr1:158969752..158969780,+!p6@IFI16!0.50!4.34!IFI16;;chr1:158969727..158969749,+!p11@IFI16!0.50!2.17!IFI16;;chr20:21686317..21686350,+!p1@PAX1!0.50!2.17!PAX1;;chr12:54394309..54394336,+!p2@HOXC9!0.50!2.17!HOXC9;;chr7:27183325..27183338,-!p5@HOXA5!0.50!2.17!HOXA5;;chr7:27212374..27212387,-!p12@HOXA10!0.50!2.17!HOXA10;;chr3:147111505..147111529,+!p6@ZIC1!0.50!2.17!ZIC1;;chr17:46675539..46675551,-!p7@HOXB6!0.50!2.17!HOXB6;;chr19:44123734..441237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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000982;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002242;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007844;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 42:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor3.CNhs12063.11462-119B4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor3.CNhs12063.11462-119B4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor3.CNhs12063.11462-119B4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor3.CNhs12063.11462-119B4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor3.CNhs12063.11462-119B4.hg38.nobarcode.ctss.bed.gz
|id=FF:11462-119B4
|is_a=EFO:0002091;;FF:0000123
|is_obsolete=
|library_id=CNhs12063
|library_id_phase_based=2:CNhs12063
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11462
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.CAGATC.11462
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11462
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.CAGATC.11462
|name=Nucleus Pulposus Cell, donor3
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12063,LSID838,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10014,,,
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|rna_box=119
|rna_catalog_number=SC4805
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=lot:5299
|rna_od260/230=
|rna_od260/280=
|rna_position=B4
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=119B4
|rna_weight_ug=10
|rnaseq_library_id=SRhi10014.CAGATC
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=nucleus pulposus cell of intervertebral disc
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.62132363187501e-225!GO:0005737;cytoplasm;3.06569466056687e-194!GO:0043231;intracellular membrane-bound organelle;7.201779538056e-180!GO:0043227;membrane-bound organelle;1.57155809267554e-179!GO:0043226;organelle;1.28032425297038e-177!GO:0043229;intracellular organelle;2.5295072147802e-177!GO:0044444;cytoplasmic part;1.01800659499121e-151!GO:0044422;organelle part;1.02864406508183e-126!GO:0044446;intracellular organelle part;2.42925976654334e-125!GO:0032991;macromolecular complex;1.78001296434308e-87!GO:0030529;ribonucleoprotein complex;6.839703278225e-86!GO:0044237;cellular metabolic process;3.5375708733289e-85!GO:0044238;primary metabolic process;1.31581366134288e-84!GO:0005739;mitochondrion;1.27522055972884e-75!GO:0043170;macromolecule metabolic process;8.5222026799476e-75!GO:0005515;protein binding;2.17209554362986e-68!GO:0043233;organelle lumen;4.04034416029237e-67!GO:0031974;membrane-enclosed lumen;4.04034416029237e-67!GO:0003723;RNA binding;2.9934944958974e-63!GO:0005634;nucleus;1.03841330623113e-57!GO:0044428;nuclear part;2.21062849047362e-57!GO:0031090;organelle membrane;8.1056078231597e-57!GO:0005840;ribosome;1.7699946365931e-56!GO:0006412;translation;9.29135417289533e-52!GO:0044429;mitochondrial part;6.64162954289851e-51!GO:0003735;structural constituent of ribosome;7.90372257771806e-50!GO:0019538;protein metabolic process;9.29803231429555e-50!GO:0009058;biosynthetic process;1.67652170658576e-48!GO:0044260;cellular macromolecule metabolic process;4.91237582551066e-45!GO:0033279;ribosomal subunit;1.06275874307004e-44!GO:0044267;cellular protein metabolic process;7.19291601957714e-44!GO:0009059;macromolecule biosynthetic process;1.46272441133253e-43!GO:0015031;protein transport;2.38263863282181e-43!GO:0044249;cellular biosynthetic process;4.02579480806416e-43!GO:0033036;macromolecule localization;1.29098973151195e-42!GO:0016043;cellular component organization and biogenesis;1.45542546272292e-42!GO:0005829;cytosol;1.50826585861947e-42!GO:0006396;RNA processing;2.44571349866328e-42!GO:0043234;protein complex;5.69544099526558e-42!GO:0031967;organelle envelope;1.27269467866775e-40!GO:0045184;establishment of protein localization;2.25698166919046e-40!GO:0031975;envelope;3.06185097668206e-40!GO:0008104;protein localization;5.10617867110258e-40!GO:0010467;gene expression;7.57551941896459e-40!GO:0043283;biopolymer metabolic process;1.94959011623445e-36!GO:0031981;nuclear lumen;3.6283202565416e-36!GO:0005740;mitochondrial envelope;3.60297302056214e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.64957322054172e-32!GO:0016071;mRNA metabolic process;3.13057868062361e-32!GO:0046907;intracellular transport;9.13398164879302e-32!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.12969294064719e-31!GO:0031966;mitochondrial membrane;2.93203697299944e-31!GO:0008380;RNA splicing;6.15457785796558e-31!GO:0019866;organelle inner membrane;7.24511986358408e-30!GO:0006886;intracellular protein transport;1.7205230059684e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.27910727586968e-29!GO:0065003;macromolecular complex assembly;1.94795739170644e-28!GO:0005743;mitochondrial inner membrane;2.16064470076969e-28!GO:0006397;mRNA processing;8.11077477555189e-28!GO:0044445;cytosolic part;3.39491297443517e-26!GO:0022607;cellular component assembly;7.20042851007579e-25!GO:0006119;oxidative phosphorylation;3.54994768425551e-24!GO:0006996;organelle organization and biogenesis;1.96828149308902e-23!GO:0015934;large ribosomal subunit;6.36434581853167e-23!GO:0015935;small ribosomal subunit;6.49195774606577e-23!GO:0044455;mitochondrial membrane part;8.97967567481666e-23!GO:0006457;protein folding;3.30863157095488e-22!GO:0005783;endoplasmic reticulum;5.00369897691909e-22!GO:0012505;endomembrane system;8.43229718831682e-22!GO:0031980;mitochondrial lumen;9.20127974824643e-22!GO:0005759;mitochondrial matrix;9.20127974824643e-22!GO:0043228;non-membrane-bound organelle;1.00693449304397e-21!GO:0043232;intracellular non-membrane-bound organelle;1.00693449304397e-21!GO:0005681;spliceosome;3.71791706969464e-21!GO:0005654;nucleoplasm;3.92151171387116e-21!GO:0051649;establishment of cellular localization;3.72195607156087e-20!GO:0048770;pigment granule;4.57681705647988e-20!GO:0042470;melanosome;4.57681705647988e-20!GO:0051641;cellular localization;7.5510919390097e-20!GO:0005746;mitochondrial respiratory chain;3.72121611676747e-19!GO:0044432;endoplasmic reticulum part;1.20233960854263e-18!GO:0003676;nucleic acid binding;2.86341067365278e-18!GO:0051186;cofactor metabolic process;3.92410027668497e-18!GO:0005794;Golgi apparatus;5.01831322821513e-18!GO:0044451;nucleoplasm part;1.56629569817433e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.27839230136526e-17!GO:0022618;protein-RNA complex assembly;2.54603007099295e-17!GO:0016462;pyrophosphatase activity;3.49474734791888e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.00761680026446e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;7.13429772582734e-17!GO:0016874;ligase activity;7.66036259726354e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.33103672205133e-16!GO:0005730;nucleolus;1.38078869263097e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.65712969620007e-16!GO:0003954;NADH dehydrogenase activity;1.65712969620007e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.65712969620007e-16!GO:0017111;nucleoside-triphosphatase activity;3.04561899145968e-16!GO:0006512;ubiquitin cycle;3.38752605381411e-16!GO:0044265;cellular macromolecule catabolic process;3.6216991689215e-16!GO:0000502;proteasome complex (sensu Eukaryota);4.15601598684801e-16!GO:0005761;mitochondrial ribosome;4.88563869528864e-16!GO:0000313;organellar ribosome;4.88563869528864e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.74287146105543e-16!GO:0043285;biopolymer catabolic process;1.15870144431494e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.21093101428026e-15!GO:0008134;transcription factor binding;1.53191002301394e-15!GO:0016070;RNA metabolic process;1.63729178534265e-15!GO:0019941;modification-dependent protein catabolic process;2.43172775164417e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.43172775164417e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.98874761519934e-15!GO:0044257;cellular protein catabolic process;3.28526060415581e-15!GO:0006259;DNA metabolic process;6.82435441522667e-15!GO:0009057;macromolecule catabolic process;7.48039978246395e-15!GO:0030964;NADH dehydrogenase complex (quinone);1.0221964574242e-14!GO:0045271;respiratory chain complex I;1.0221964574242e-14!GO:0005747;mitochondrial respiratory chain complex I;1.0221964574242e-14!GO:0000166;nucleotide binding;1.0221964574242e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.04528039978777e-14!GO:0042773;ATP synthesis coupled electron transport;1.04528039978777e-14!GO:0006605;protein targeting;1.25819773065e-14!GO:0008135;translation factor activity, nucleic acid binding;1.57361646429716e-14!GO:0051082;unfolded protein binding;1.93326376419348e-14!GO:0044248;cellular catabolic process;2.40219085007593e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.90489131124534e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.46417761354891e-14!GO:0030163;protein catabolic process;4.30843484905656e-14!GO:0048193;Golgi vesicle transport;7.41907884917569e-14!GO:0006732;coenzyme metabolic process;8.6676814110702e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.22594785440869e-13!GO:0005789;endoplasmic reticulum membrane;2.31750886738911e-13!GO:0016192;vesicle-mediated transport;2.31750886738911e-13!GO:0005793;ER-Golgi intermediate compartment;5.20156808021654e-13!GO:0042254;ribosome biogenesis and assembly;2.98573653690992e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;5.07009838621471e-12!GO:0000375;RNA splicing, via transesterification reactions;5.07009838621471e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.07009838621471e-12!GO:0009055;electron carrier activity;6.91855502488173e-12!GO:0003743;translation initiation factor activity;1.04328937912144e-11!GO:0043412;biopolymer modification;1.8427615861603e-11!GO:0007049;cell cycle;2.93177203807211e-11!GO:0006413;translational initiation;3.35586026297004e-11!GO:0006163;purine nucleotide metabolic process;8.6895710974223e-11!GO:0009150;purine ribonucleotide metabolic process;1.25754123562678e-10!GO:0009259;ribonucleotide metabolic process;1.25754123562678e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.59155564683091e-10!GO:0012501;programmed cell death;1.71447330226891e-10!GO:0006464;protein modification process;3.69664066999435e-10!GO:0017076;purine nucleotide binding;3.74740985639437e-10!GO:0006915;apoptosis;4.38075098372766e-10!GO:0006446;regulation of translational initiation;4.4760676119724e-10!GO:0006164;purine nucleotide biosynthetic process;6.56335076374013e-10!GO:0032553;ribonucleotide binding;7.7359908602384e-10!GO:0032555;purine ribonucleotide binding;7.7359908602384e-10!GO:0009152;purine ribonucleotide biosynthetic process;9.13367355037499e-10!GO:0008219;cell death;1.10947680536463e-09!GO:0016265;death;1.10947680536463e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.43208453143668e-09!GO:0006399;tRNA metabolic process;1.69892221950792e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.75361234013136e-09!GO:0009260;ribonucleotide biosynthetic process;1.95689662844133e-09!GO:0005768;endosome;2.03335025416445e-09!GO:0016491;oxidoreductase activity;2.11667531521174e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.11667531521174e-09!GO:0009144;purine nucleoside triphosphate metabolic process;2.11667531521174e-09!GO:0009141;nucleoside triphosphate metabolic process;2.16452855422111e-09!GO:0016604;nuclear body;2.16776586471644e-09!GO:0003712;transcription cofactor activity;2.25968727512236e-09!GO:0008565;protein transporter activity;3.08111966597679e-09!GO:0031965;nuclear membrane;3.2023524577324e-09!GO:0051188;cofactor biosynthetic process;4.29533356219251e-09!GO:0009060;aerobic respiration;4.31156954091634e-09!GO:0005635;nuclear envelope;4.31868098613761e-09!GO:0006913;nucleocytoplasmic transport;4.83109856473574e-09!GO:0048523;negative regulation of cellular process;6.55020857600607e-09!GO:0009056;catabolic process;7.768905575299e-09!GO:0045333;cellular respiration;7.92928336342546e-09!GO:0015986;ATP synthesis coupled proton transport;8.69021573652509e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;8.69021573652509e-09!GO:0008639;small protein conjugating enzyme activity;8.77278695118616e-09!GO:0051169;nuclear transport;9.46066847046195e-09!GO:0017038;protein import;1.03769714155403e-08!GO:0006461;protein complex assembly;1.41787971067467e-08!GO:0046034;ATP metabolic process;1.55773057271501e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.6363376772825e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.6363376772825e-08!GO:0004842;ubiquitin-protein ligase activity;1.77006683622815e-08!GO:0044431;Golgi apparatus part;1.85028682700323e-08!GO:0022402;cell cycle process;2.17913174339153e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.42891814813704e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.42891814813704e-08!GO:0006974;response to DNA damage stimulus;2.44077518648846e-08!GO:0019829;cation-transporting ATPase activity;2.62995096870901e-08!GO:0019787;small conjugating protein ligase activity;2.64775173039505e-08!GO:0043687;post-translational protein modification;2.67107326864123e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.70055648427321e-08!GO:0030120;vesicle coat;3.63056202071999e-08!GO:0030662;coated vesicle membrane;3.63056202071999e-08!GO:0050794;regulation of cellular process;4.17278817701663e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.2856903984069e-08!GO:0004812;aminoacyl-tRNA ligase activity;4.2856903984069e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.2856903984069e-08!GO:0015078;hydrogen ion transmembrane transporter activity;4.3126645464439e-08!GO:0044453;nuclear membrane part;5.51000395800062e-08!GO:0051246;regulation of protein metabolic process;5.59871895841081e-08!GO:0016887;ATPase activity;5.8823047350927e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.02426225135573e-08!GO:0006364;rRNA processing;7.11548142188945e-08!GO:0042623;ATPase activity, coupled;7.44414152722902e-08!GO:0016469;proton-transporting two-sector ATPase complex;7.50628989024068e-08!GO:0030532;small nuclear ribonucleoprotein complex;7.70582782472496e-08!GO:0006888;ER to Golgi vesicle-mediated transport;8.04748183578841e-08!GO:0043038;amino acid activation;9.18901816299183e-08!GO:0006418;tRNA aminoacylation for protein translation;9.18901816299183e-08!GO:0043039;tRNA aminoacylation;9.18901816299183e-08!GO:0007005;mitochondrion organization and biogenesis;1.03131066727469e-07!GO:0003924;GTPase activity;1.08826253162399e-07!GO:0016072;rRNA metabolic process;1.51697880111315e-07!GO:0051726;regulation of cell cycle;1.57467416328448e-07!GO:0006754;ATP biosynthetic process;1.57663841311245e-07!GO:0006753;nucleoside phosphate metabolic process;1.57663841311245e-07!GO:0000074;regulation of progression through cell cycle;1.57663841311245e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.58352400783814e-07!GO:0006099;tricarboxylic acid cycle;1.89241605575021e-07!GO:0046356;acetyl-CoA catabolic process;1.89241605575021e-07!GO:0048519;negative regulation of biological process;1.97072584735026e-07!GO:0006366;transcription from RNA polymerase II promoter;2.13193324711346e-07!GO:0051187;cofactor catabolic process;2.23318238642553e-07!GO:0048475;coated membrane;2.31282069107679e-07!GO:0030117;membrane coat;2.31282069107679e-07!GO:0005788;endoplasmic reticulum lumen;2.47436780674345e-07!GO:0030554;adenyl nucleotide binding;2.77717597080986e-07!GO:0006091;generation of precursor metabolites and energy;2.80503207741712e-07!GO:0005524;ATP binding;3.27708916173379e-07!GO:0044440;endosomal part;3.63995475591438e-07!GO:0010008;endosome membrane;3.63995475591438e-07!GO:0016881;acid-amino acid ligase activity;3.86876957865011e-07!GO:0016023;cytoplasmic membrane-bound vesicle;3.95337700812931e-07!GO:0031988;membrane-bound vesicle;4.13161995677001e-07!GO:0009117;nucleotide metabolic process;4.20554702903071e-07!GO:0009108;coenzyme biosynthetic process;4.31879584920455e-07!GO:0032559;adenyl ribonucleotide binding;4.3882994458595e-07!GO:0009109;coenzyme catabolic process;4.60081063454931e-07!GO:0006323;DNA packaging;4.91901510466077e-07!GO:0006084;acetyl-CoA metabolic process;4.91901510466077e-07!GO:0016607;nuclear speck;4.91901510466077e-07!GO:0016853;isomerase activity;5.44142778864722e-07!GO:0005773;vacuole;5.91950755010122e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.95816030944993e-07!GO:0065002;intracellular protein transport across a membrane;8.94233498249434e-07!GO:0008026;ATP-dependent helicase activity;9.01918496491666e-07!GO:0045259;proton-transporting ATP synthase complex;9.49982730762186e-07!GO:0005770;late endosome;1.1273076093994e-06!GO:0045786;negative regulation of progression through cell cycle;1.25906844651436e-06!GO:0008654;phospholipid biosynthetic process;1.4802750619046e-06!GO:0005762;mitochondrial large ribosomal subunit;1.6733331807825e-06!GO:0000315;organellar large ribosomal subunit;1.6733331807825e-06!GO:0051276;chromosome organization and biogenesis;1.82595972716004e-06!GO:0031982;vesicle;1.93342563068651e-06!GO:0042981;regulation of apoptosis;2.00320060840446e-06!GO:0031410;cytoplasmic vesicle;2.09600296388095e-06!GO:0043067;regulation of programmed cell death;2.11920652702981e-06!GO:0000278;mitotic cell cycle;2.31950460102343e-06!GO:0005643;nuclear pore;2.38128912280432e-06!GO:0000139;Golgi membrane;2.41827602860172e-06!GO:0065004;protein-DNA complex assembly;2.58119119162464e-06!GO:0043566;structure-specific DNA binding;3.36034779456576e-06!GO:0004386;helicase activity;3.45916053849639e-06!GO:0015980;energy derivation by oxidation of organic compounds;3.4854546429036e-06!GO:0050789;regulation of biological process;3.54902015732701e-06!GO:0006752;group transfer coenzyme metabolic process;4.49781397671081e-06!GO:0006281;DNA repair;4.55752798806429e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.73522932208453e-06!GO:0005798;Golgi-associated vesicle;4.7718053677702e-06!GO:0004298;threonine endopeptidase activity;5.17938109418181e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.25897948339208e-06!GO:0016859;cis-trans isomerase activity;5.51458044194204e-06!GO:0043069;negative regulation of programmed cell death;5.5400189503523e-06!GO:0000323;lytic vacuole;6.49267884611216e-06!GO:0005764;lysosome;6.49267884611216e-06!GO:0009719;response to endogenous stimulus;7.06678910506099e-06!GO:0043066;negative regulation of apoptosis;7.26464776357371e-06!GO:0008361;regulation of cell size;8.55864667796573e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.68445320052349e-06!GO:0016049;cell growth;9.14868536992688e-06!GO:0000245;spliceosome assembly;9.14868536992688e-06!GO:0051170;nuclear import;9.67166016170467e-06!GO:0046930;pore complex;9.98762097295947e-06!GO:0032446;protein modification by small protein conjugation;1.09162881083926e-05!GO:0006606;protein import into nucleus;1.10225402015366e-05!GO:0031252;leading edge;1.21219805095113e-05!GO:0019843;rRNA binding;1.27510076330748e-05!GO:0016567;protein ubiquitination;1.31633739705114e-05!GO:0006613;cotranslational protein targeting to membrane;1.41004834289996e-05!GO:0003697;single-stranded DNA binding;1.52382847545216e-05!GO:0005667;transcription factor complex;1.56690433168233e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.92995011657418e-05!GO:0000151;ubiquitin ligase complex;1.932841418115e-05!GO:0030133;transport vesicle;1.97817798222316e-05!GO:0016787;hydrolase activity;1.98189108044525e-05!GO:0044262;cellular carbohydrate metabolic process;2.29596541275439e-05!GO:0006916;anti-apoptosis;2.47863350759619e-05!GO:0006333;chromatin assembly or disassembly;2.60804452946943e-05!GO:0000314;organellar small ribosomal subunit;2.96896087962831e-05!GO:0005763;mitochondrial small ribosomal subunit;2.96896087962831e-05!GO:0005525;GTP binding;3.21143328446054e-05!GO:0005769;early endosome;3.30543874317512e-05!GO:0001558;regulation of cell growth;3.57023082952556e-05!GO:0003713;transcription coactivator activity;3.57138033930774e-05!GO:0016563;transcription activator activity;3.8101755966463e-05!GO:0019867;outer membrane;4.29576049630035e-05!GO:0005905;coated pit;4.39252349020065e-05!GO:0045454;cell redox homeostasis;4.45120754661843e-05!GO:0050657;nucleic acid transport;4.45120754661843e-05!GO:0051236;establishment of RNA localization;4.45120754661843e-05!GO:0050658;RNA transport;4.45120754661843e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.58180002449417e-05!GO:0000785;chromatin;4.87081016119561e-05!GO:0006403;RNA localization;4.89921562298174e-05!GO:0016740;transferase activity;4.89921562298174e-05!GO:0031968;organelle outer membrane;5.207141354065e-05!GO:0016568;chromatin modification;7.23652682269265e-05!GO:0043021;ribonucleoprotein binding;7.62870830503778e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.13103245756798e-05!GO:0005694;chromosome;9.33444669648393e-05!GO:0030867;rough endoplasmic reticulum membrane;9.92191882820263e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000115287282823792!GO:0005741;mitochondrial outer membrane;0.000116823121672062!GO:0051427;hormone receptor binding;0.000122866081231806!GO:0043623;cellular protein complex assembly;0.000124386691260745!GO:0031324;negative regulation of cellular metabolic process;0.000125226715962168!GO:0008610;lipid biosynthetic process;0.000128178250335069!GO:0046474;glycerophospholipid biosynthetic process;0.000131280705477772!GO:0033116;ER-Golgi intermediate compartment membrane;0.000151765371301543!GO:0032561;guanyl ribonucleotide binding;0.000155413057982366!GO:0019001;guanyl nucleotide binding;0.000155413057982366!GO:0016126;sterol biosynthetic process;0.000156016337365094!GO:0003714;transcription corepressor activity;0.000156413780606359!GO:0016564;transcription repressor activity;0.000185733233499868!GO:0051789;response to protein stimulus;0.000185887607509289!GO:0006986;response to unfolded protein;0.000185887607509289!GO:0003724;RNA helicase activity;0.000196245917395682!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000227458652335055!GO:0035257;nuclear hormone receptor binding;0.000258914738971239!GO:0046467;membrane lipid biosynthetic process;0.000262452216852162!GO:0019899;enzyme binding;0.000266554386387574!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000267684534296219!GO:0004576;oligosaccharyl transferase activity;0.000279584171339097!GO:0006793;phosphorus metabolic process;0.000280872859217321!GO:0006796;phosphate metabolic process;0.000280872859217321!GO:0006334;nucleosome assembly;0.000298707093235764!GO:0019222;regulation of metabolic process;0.000318006397823521!GO:0005791;rough endoplasmic reticulum;0.000322565040668492!GO:0008250;oligosaccharyl transferase complex;0.0003337108445158!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000348568901550677!GO:0016779;nucleotidyltransferase activity;0.000397891762713573!GO:0003899;DNA-directed RNA polymerase activity;0.000420688708794358!GO:0006260;DNA replication;0.000449295700324035!GO:0043681;protein import into mitochondrion;0.00045091802704842!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00046415519341614!GO:0016044;membrane organization and biogenesis;0.000482075257955591!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000503597072570533!GO:0005048;signal sequence binding;0.000516941579917004!GO:0044427;chromosomal part;0.000516941579917004!GO:0030036;actin cytoskeleton organization and biogenesis;0.000526048496769136!GO:0005885;Arp2/3 protein complex;0.000539856131578831!GO:0009165;nucleotide biosynthetic process;0.000539856131578831!GO:0009892;negative regulation of metabolic process;0.00056139258844686!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000602693475431855!GO:0031497;chromatin assembly;0.00062206138765997!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000643835797151923!GO:0005813;centrosome;0.000669139258432425!GO:0030663;COPI coated vesicle membrane;0.000670714557397225!GO:0030126;COPI vesicle coat;0.000670714557397225!GO:0051028;mRNA transport;0.000689922168297294!GO:0051920;peroxiredoxin activity;0.000739968327933141!GO:0040008;regulation of growth;0.000741048845881593!GO:0006612;protein targeting to membrane;0.000757021991842267!GO:0006082;organic acid metabolic process;0.000812994969867315!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000823283374783922!GO:0015630;microtubule cytoskeleton;0.000835345956250757!GO:0019752;carboxylic acid metabolic process;0.000835345956250757!GO:0007050;cell cycle arrest;0.00084397638823291!GO:0006626;protein targeting to mitochondrion;0.000859169524655996!GO:0006695;cholesterol biosynthetic process;0.000862248183097708!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000967912733252497!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00102607305974662!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00102607305974662!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00102607305974662!GO:0018196;peptidyl-asparagine modification;0.00103998577887306!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00103998577887306!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00110366588276639!GO:0003729;mRNA binding;0.00114247725673512!GO:0016310;phosphorylation;0.00114538976406034!GO:0031072;heat shock protein binding;0.00146719335818888!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00155860506685452!GO:0015399;primary active transmembrane transporter activity;0.00155860506685452!GO:0007006;mitochondrial membrane organization and biogenesis;0.00159770185798161!GO:0005815;microtubule organizing center;0.00168261774594748!GO:0022403;cell cycle phase;0.00171552273207676!GO:0006383;transcription from RNA polymerase III promoter;0.00174657698913701!GO:0006414;translational elongation;0.00180823989452377!GO:0000087;M phase of mitotic cell cycle;0.00185537531013691!GO:0030118;clathrin coat;0.0019145464672953!GO:0030137;COPI-coated vesicle;0.00193659740232564!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00197376563371889!GO:0048471;perinuclear region of cytoplasm;0.00197376563371889!GO:0016481;negative regulation of transcription;0.00197836565596034!GO:0065007;biological regulation;0.00202150444390641!GO:0007243;protein kinase cascade;0.00207533773606249!GO:0043284;biopolymer biosynthetic process;0.0021029088756729!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0021029088756729!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0021029088756729!GO:0051287;NAD binding;0.00210560485119661!GO:0006839;mitochondrial transport;0.00213925704352645!GO:0030658;transport vesicle membrane;0.00218145704161168!GO:0007067;mitosis;0.00228199564549678!GO:0050662;coenzyme binding;0.00229683979306599!GO:0048500;signal recognition particle;0.0023506662902398!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00239242920027482!GO:0006891;intra-Golgi vesicle-mediated transport;0.00243455094817782!GO:0030880;RNA polymerase complex;0.00251400361278496!GO:0031902;late endosome membrane;0.00253380185713769!GO:0006650;glycerophospholipid metabolic process;0.00258448970356121!GO:0030132;clathrin coat of coated pit;0.00264452269307354!GO:0043488;regulation of mRNA stability;0.00268400198300045!GO:0043487;regulation of RNA stability;0.00268400198300045!GO:0030029;actin filament-based process;0.00273106194119598!GO:0046489;phosphoinositide biosynthetic process;0.00273812167219659!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0027498943540571!GO:0048522;positive regulation of cellular process;0.00282878438552336!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00283415291776017!GO:0015002;heme-copper terminal oxidase activity;0.00283415291776017!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00283415291776017!GO:0004129;cytochrome-c oxidase activity;0.00283415291776017!GO:0003690;double-stranded DNA binding;0.00288500157964366!GO:0007264;small GTPase mediated signal transduction;0.00290974424779405!GO:0008033;tRNA processing;0.00296574234713548!GO:0051252;regulation of RNA metabolic process;0.00303166129301096!GO:0006979;response to oxidative stress;0.00317952504339009!GO:0031901;early endosome membrane;0.00326219224284638!GO:0030176;integral to endoplasmic reticulum membrane;0.00336850305859764!GO:0006818;hydrogen transport;0.0034080009886634!GO:0042802;identical protein binding;0.0034080009886634!GO:0005774;vacuolar membrane;0.00356493320875052!GO:0015992;proton transport;0.00360222099531437!GO:0051101;regulation of DNA binding;0.00396574147971466!GO:0051329;interphase of mitotic cell cycle;0.00407559810630766!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00426050237298226!GO:0016408;C-acyltransferase activity;0.00426158553890381!GO:0008154;actin polymerization and/or depolymerization;0.00453987333077877!GO:0044452;nucleolar part;0.00453987333077877!GO:0030027;lamellipodium;0.00456231049142505!GO:0004177;aminopeptidase activity;0.00475904582506115!GO:0022890;inorganic cation transmembrane transporter activity;0.00475904582506115!GO:0051087;chaperone binding;0.00488712642557244!GO:0033673;negative regulation of kinase activity;0.0052060483026545!GO:0006469;negative regulation of protein kinase activity;0.0052060483026545!GO:0048037;cofactor binding;0.00547890248334488!GO:0000049;tRNA binding;0.00559827626013842!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00559827626013842!GO:0045047;protein targeting to ER;0.00559827626013842!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00559827626013842!GO:0000428;DNA-directed RNA polymerase complex;0.00559827626013842!GO:0006509;membrane protein ectodomain proteolysis;0.00572890179442103!GO:0033619;membrane protein proteolysis;0.00572890179442103!GO:0006118;electron transport;0.00583036196021976!GO:0008186;RNA-dependent ATPase activity;0.00583036196021976!GO:0006595;polyamine metabolic process;0.00613664545446438!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00621622264468449!GO:0030041;actin filament polymerization;0.00629983103858675!GO:0030660;Golgi-associated vesicle membrane;0.00629983103858675!GO:0030119;AP-type membrane coat adaptor complex;0.00629983103858675!GO:0000059;protein import into nucleus, docking;0.00639904131961376!GO:0065009;regulation of a molecular function;0.00647577615084123!GO:0048487;beta-tubulin binding;0.00647577615084123!GO:0006778;porphyrin metabolic process;0.00648101513423436!GO:0033013;tetrapyrrole metabolic process;0.00648101513423436!GO:0051301;cell division;0.00649955935652019!GO:0006740;NADPH regeneration;0.00649955935652019!GO:0006098;pentose-phosphate shunt;0.00649955935652019!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00650438951332329!GO:0030134;ER to Golgi transport vesicle;0.00654196696381879!GO:0008632;apoptotic program;0.00662634446241709!GO:0030659;cytoplasmic vesicle membrane;0.0066343977885736!GO:0017166;vinculin binding;0.00665369850249314!GO:0051325;interphase;0.00674243670002333!GO:0005869;dynactin complex;0.00696057394404675!GO:0051128;regulation of cellular component organization and biogenesis;0.00704373768492128!GO:0008180;signalosome;0.00710965862918031!GO:0006352;transcription initiation;0.007133906377188!GO:0045045;secretory pathway;0.00721697404569315!GO:0042158;lipoprotein biosynthetic process;0.00784516024469696!GO:0051348;negative regulation of transferase activity;0.00794162942579813!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00794162942579813!GO:0016363;nuclear matrix;0.00816601857050787!GO:0016272;prefoldin complex;0.00816601857050787!GO:0008312;7S RNA binding;0.00845144382817621!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00849212887610054!GO:0030125;clathrin vesicle coat;0.00877756788355605!GO:0030665;clathrin coated vesicle membrane;0.00877756788355605!GO:0046483;heterocycle metabolic process;0.00888560776270627!GO:0044437;vacuolar part;0.0089473301972004!GO:0007040;lysosome organization and biogenesis;0.00908986116387703!GO:0001726;ruffle;0.0091346022398112!GO:0043022;ribosome binding;0.00984047813097422!GO:0005684;U2-dependent spliceosome;0.0101731612948252!GO:0051539;4 iron, 4 sulfur cluster binding;0.0101731612948252!GO:0043492;ATPase activity, coupled to movement of substances;0.0102191397605047!GO:0008092;cytoskeletal protein binding;0.0102784784858493!GO:0030131;clathrin adaptor complex;0.0102835212974946!GO:0006497;protein amino acid lipidation;0.0103559061926597!GO:0008139;nuclear localization sequence binding;0.0104225044353474!GO:0005765;lysosomal membrane;0.0107264061296755!GO:0030127;COPII vesicle coat;0.0107271164213633!GO:0012507;ER to Golgi transport vesicle membrane;0.0107271164213633!GO:0045941;positive regulation of transcription;0.0111961129631346!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0112255326226936!GO:0051168;nuclear export;0.011494891942926!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0119506798347548!GO:0005665;DNA-directed RNA polymerase II, core complex;0.012395307790698!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0126495149169433!GO:0030145;manganese ion binding;0.012945595802491!GO:0042168;heme metabolic process;0.0130432903781925!GO:0008652;amino acid biosynthetic process;0.0130432903781925!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0130432903781925!GO:0033043;regulation of organelle organization and biogenesis;0.0130432903781925!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0132574998128463!GO:0015631;tubulin binding;0.0135168860013454!GO:0003746;translation elongation factor activity;0.0135278741989983!GO:0016860;intramolecular oxidoreductase activity;0.0136786654989845!GO:0004004;ATP-dependent RNA helicase activity;0.0137832920303813!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0145092146347667!GO:0030521;androgen receptor signaling pathway;0.0145222053957798!GO:0006402;mRNA catabolic process;0.0145222053957798!GO:0006733;oxidoreduction coenzyme metabolic process;0.0145222053957798!GO:0007010;cytoskeleton organization and biogenesis;0.0145558135917497!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0148049241217625!GO:0051540;metal cluster binding;0.0150134382518001!GO:0051536;iron-sulfur cluster binding;0.0150134382518001!GO:0044433;cytoplasmic vesicle part;0.0154144745941665!GO:0005832;chaperonin-containing T-complex;0.0154454872103409!GO:0031625;ubiquitin protein ligase binding;0.0159162535113533!GO:0006506;GPI anchor biosynthetic process;0.016012234733122!GO:0031529;ruffle organization and biogenesis;0.0162231118001598!GO:0031543;peptidyl-proline dioxygenase activity;0.0165025566179726!GO:0016197;endosome transport;0.0165828085682846!GO:0035258;steroid hormone receptor binding;0.0167320754167649!GO:0006779;porphyrin biosynthetic process;0.0167320754167649!GO:0033014;tetrapyrrole biosynthetic process;0.0167320754167649!GO:0008637;apoptotic mitochondrial changes;0.0175370835768675!GO:0045792;negative regulation of cell size;0.0175370835768675!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0177757084156385!GO:0006769;nicotinamide metabolic process;0.0177881099119301!GO:0003711;transcription elongation regulator activity;0.018014717673552!GO:0048468;cell development;0.0180700607830128!GO:0051098;regulation of binding;0.0182197280508702!GO:0030308;negative regulation of cell growth;0.0182344340422759!GO:0007033;vacuole organization and biogenesis;0.0188058740074552!GO:0000339;RNA cap binding;0.0193012123740528!GO:0009303;rRNA transcription;0.0193360221317738!GO:0031323;regulation of cellular metabolic process;0.0197125910826578!GO:0016407;acetyltransferase activity;0.0198600604942665!GO:0006505;GPI anchor metabolic process;0.0201705429500911!GO:0006643;membrane lipid metabolic process;0.0202708340774517!GO:0005862;muscle thin filament tropomyosin;0.0205551533404167!GO:0045893;positive regulation of transcription, DNA-dependent;0.0209005336993397!GO:0012506;vesicle membrane;0.0209005336993397!GO:0006739;NADP metabolic process;0.0209007480505229!GO:0003684;damaged DNA binding;0.0215528084972223!GO:0007021;tubulin folding;0.0219130513389451!GO:0019798;procollagen-proline dioxygenase activity;0.0220828549497416!GO:0035035;histone acetyltransferase binding;0.0221691188837285!GO:0005637;nuclear inner membrane;0.0224194726880947!GO:0006520;amino acid metabolic process;0.0228270448081272!GO:0030384;phosphoinositide metabolic process;0.0228973488985081!GO:0051059;NF-kappaB binding;0.0230153347561312!GO:0031418;L-ascorbic acid binding;0.0232435453696149!GO:0031124;mRNA 3'-end processing;0.0233087338067232!GO:0005975;carbohydrate metabolic process;0.0240722417512837!GO:0045892;negative regulation of transcription, DNA-dependent;0.0247393039362404!GO:0009081;branched chain family amino acid metabolic process;0.024926033877331!GO:0043433;negative regulation of transcription factor activity;0.0249353290544925!GO:0006066;alcohol metabolic process;0.0251587517338796!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0253624698426776!GO:0006897;endocytosis;0.0253624698426776!GO:0010324;membrane invagination;0.0253624698426776!GO:0000096;sulfur amino acid metabolic process;0.0262363759356052!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0264882181338169!GO:0006892;post-Golgi vesicle-mediated transport;0.026615614830602!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0266686039107001!GO:0010257;NADH dehydrogenase complex assembly;0.0266686039107001!GO:0033108;mitochondrial respiratory chain complex assembly;0.0266686039107001!GO:0030833;regulation of actin filament polymerization;0.0268183704215942!GO:0000786;nucleosome;0.0268183704215942!GO:0006289;nucleotide-excision repair;0.0271263940506283!GO:0006807;nitrogen compound metabolic process;0.0271273991779898!GO:0006767;water-soluble vitamin metabolic process;0.0271825448936378!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0275182505330286!GO:0006007;glucose catabolic process;0.0280953363994385!GO:0004860;protein kinase inhibitor activity;0.0284804956498859!GO:0031272;regulation of pseudopodium formation;0.0284804956498859!GO:0031269;pseudopodium formation;0.0284804956498859!GO:0031344;regulation of cell projection organization and biogenesis;0.0284804956498859!GO:0031268;pseudopodium organization and biogenesis;0.0284804956498859!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0284804956498859!GO:0031274;positive regulation of pseudopodium formation;0.0284804956498859!GO:0016125;sterol metabolic process;0.0284804956498859!GO:0006350;transcription;0.0310724275018724!GO:0004722;protein serine/threonine phosphatase activity;0.0315426533808557!GO:0006401;RNA catabolic process;0.0318565917808845!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.03229988981174!GO:0006417;regulation of translation;0.0323795996574297!GO:0030508;thiol-disulfide exchange intermediate activity;0.0325182339355722!GO:0009308;amine metabolic process;0.0327911908613358!GO:0000209;protein polyubiquitination;0.0329622784464632!GO:0006783;heme biosynthetic process;0.0331151263203989!GO:0005758;mitochondrial intermembrane space;0.0331703968355591!GO:0008168;methyltransferase activity;0.0332112540422466!GO:0033559;unsaturated fatty acid metabolic process;0.0332417246998393!GO:0006636;unsaturated fatty acid biosynthetic process;0.0332417246998393!GO:0007034;vacuolar transport;0.0332854680859343!GO:0008097;5S rRNA binding;0.0338634212153056!GO:0051235;maintenance of localization;0.0339966701107468!GO:0016741;transferase activity, transferring one-carbon groups;0.0349610343897759!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.035752502415099!GO:0046519;sphingoid metabolic process;0.0363555677633983!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0374162652675475!GO:0046822;regulation of nucleocytoplasmic transport;0.0375955669616599!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0377034163227505!GO:0030911;TPR domain binding;0.0389493584868515!GO:0006672;ceramide metabolic process;0.0390640869609587!GO:0019318;hexose metabolic process;0.0395145905896182!GO:0022408;negative regulation of cell-cell adhesion;0.0395145905896182!GO:0016251;general RNA polymerase II transcription factor activity;0.0397985864963404!GO:0050178;phenylpyruvate tautomerase activity;0.0398811711281458!GO:0050681;androgen receptor binding;0.0401812962897567!GO:0009225;nucleotide-sugar metabolic process;0.0406700452586256!GO:0006354;RNA elongation;0.0409882070964287!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0411028525486306!GO:0015036;disulfide oxidoreductase activity;0.0411072242943487!GO:0005996;monosaccharide metabolic process;0.0411160850810405!GO:0044255;cellular lipid metabolic process;0.0411160850810405!GO:0000082;G1/S transition of mitotic cell cycle;0.0412257300708436!GO:0005100;Rho GTPase activator activity;0.0412257300708436!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0416297538187172!GO:0048518;positive regulation of biological process;0.0423913181789188!GO:0006611;protein export from nucleus;0.0423913181789188!GO:0050811;GABA receptor binding;0.0424931026149768!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0424931026149768!GO:0032940;secretion by cell;0.0429238005352365!GO:0009967;positive regulation of signal transduction;0.0437923848660939!GO:0008538;proteasome activator activity;0.0440279015628135!GO:0008047;enzyme activator activity;0.04437071587619!GO:0006376;mRNA splice site selection;0.04437071587619!GO:0000389;nuclear mRNA 3'-splice site recognition;0.04437071587619!GO:0008022;protein C-terminus binding;0.0445378985136394!GO:0001872;zymosan binding;0.0447210944529456!GO:0001878;response to yeast;0.0447210944529456!GO:0019362;pyridine nucleotide metabolic process;0.0448459048337907!GO:0040029;regulation of gene expression, epigenetic;0.0448459048337907!GO:0006644;phospholipid metabolic process;0.0448592350698686!GO:0006790;sulfur metabolic process;0.0456812077948831!GO:0044438;microbody part;0.0461344210151325!GO:0044439;peroxisomal part;0.0461344210151325!GO:0000792;heterochromatin;0.0461344210151325!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0461922891955383!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0461922891955383!GO:0006984;ER-nuclear signaling pathway;0.0461922891955383!GO:0010468;regulation of gene expression;0.0465861177885007!GO:0045926;negative regulation of growth;0.0466882035362603!GO:0003756;protein disulfide isomerase activity;0.0468159082527176!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0468159082527176!GO:0008287;protein serine/threonine phosphatase complex;0.04762138942276!GO:0006635;fatty acid beta-oxidation;0.0477075040300517!GO:0031371;ubiquitin conjugating enzyme complex;0.0477075040300517!GO:0030433;ER-associated protein catabolic process;0.0477075040300517!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0477075040300517!GO:0016791;phosphoric monoester hydrolase activity;0.0477075040300517!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0479271463730745!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0483875686989497!GO:0000118;histone deacetylase complex;0.0485172358477369!GO:0007030;Golgi organization and biogenesis;0.0487001883133681!GO:0030031;cell projection biogenesis;0.048843911645523!GO:0030518;steroid hormone receptor signaling pathway;0.0490265509741727!GO:0000287;magnesium ion binding;0.0495084649493488!GO:0005819;spindle;0.0498768914235228
|sample_id=11462
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=spinal cord
|top_motifs=GZF1:1.75588598324;RXR{A,B,G}:1.57255888998;HES1:1.31228423721;HOX{A5,B5}:1.21382168085;TFAP4:1.11789091164;AIRE:1.10067934309;DBP:0.949627362268;GFI1B:0.875235231188;FOXL1:0.875163466871;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.868308550736;ESR1:0.867277846996;EN1,2:0.84898744983;ATF6:0.840381255422;EBF1:0.803277137446;ZIC1..3:0.75903997735;PAX5:0.73986818849;UFEwm:0.712941104984;ZNF423:0.694175682693;ZNF238:0.693187674573;PAX1,9:0.686879948951;bHLH_family:0.679936813161;ONECUT1,2:0.624005403823;PATZ1:0.620987015376;NKX2-2,8:0.607387463917;NR3C1:0.600005676447;ADNP_IRX_SIX_ZHX:0.561268327594;NFATC1..3:0.552912590883;TEAD1:0.546990576218;NR6A1:0.534965695995;NFIX:0.527276780127;SRF:0.523511407807;NANOG{mouse}:0.520066137016;NKX2-1,4:0.513145260515;GLI1..3:0.500728454166;ZBTB6:0.498027162272;MYBL2:0.474025864083;NKX2-3_NKX2-5:0.467476873781;MAFB:0.458887510947;MZF1:0.450757944652;STAT2,4,6:0.447377315196;LHX3,4:0.440163829717;NR1H4:0.436646420944;HIF1A:0.43630313377;TLX1..3_NFIC{dimer}:0.43064469493;NKX3-1:0.411565133419;KLF4:0.394804237742;PAX8:0.391415173707;RXRA_VDR{dimer}:0.381096072922;FOXD3:0.360433076497;NKX6-1,2:0.350634826255;TFCP2:0.329619102562;GTF2A1,2:0.321192252544;NR5A1,2:0.316183792805;EVI1:0.30450915147;RREB1:0.304299802024;TP53:0.302431845515;TBX4,5:0.280483148321;HLF:0.279986134664;TAL1_TCF{3,4,12}:0.277033543511;TEF:0.259481091796;XBP1:0.255027521161;MAZ:0.2405967819;CEBPA,B_DDIT3:0.214474921603;GTF2I:0.21425118451;YY1:0.212101412848;HNF4A_NR2F1,2:0.211444240999;SOX17:0.202944685698;NFE2L1:0.200479653851;ALX4:0.196800624976;HAND1,2:0.183508407164;ESRRA:0.164949631761;IKZF1:0.157131082519;FOX{I1,J2}:0.140441192668;POU1F1:0.138218653751;NHLH1,2:0.138073101182;AHR_ARNT_ARNT2:0.134569584377;GFI1:0.134564385487;PAX4:0.126298718206;SREBF1,2:0.1210508686;TFAP2B:0.120093130652;ZNF384:0.118993157924;PPARG:0.114883407343;ARID5B:0.110690594687;HIC1:0.104858707112;HNF1A:0.096179012332;ZNF148:0.0733558219154;BACH2:0.0673808202304;PRDM1:0.0460708709214;TGIF1:0.0442749265685;FOXO1,3,4:0.0410967057562;SPZ1:0.0356274205328;SP1:0.0321060687358;RUNX1..3:0.0282076794735;PRRX1,2:0.0251666015399;MEF2{A,B,C,D}:0.0118582451916;DMAP1_NCOR{1,2}_SMARC:0.00843725265459;REST:0.00676445338827;HMX1:0.00641858230595;NFE2:0.0039172353819;LEF1_TCF7_TCF7L1,2:-0.000751655062666;NFE2L2:-0.00769644658577;AR:-0.00826511985036;PDX1:-0.012595117403;FOX{F1,F2,J1}:-0.0153044634775;FOSL2:-0.0154061994373;TBP:-0.0214376239268;RFX1:-0.0258509530189;FOXQ1:-0.0377421964363;CRX:-0.0396886262903;XCPE1{core}:-0.053364249053;MED-1{core}:-0.0544111389611;EGR1..3:-0.0613002786568;FOS_FOS{B,L1}_JUN{B,D}:-0.0643236502515;ZNF143:-0.0708462518591;TFAP2{A,C}:-0.0820753661942;RBPJ:-0.0962307705189;ELK1,4_GABP{A,B1}:-0.112422713253;STAT1,3:-0.116547457388;MTE{core}:-0.119522929103;FOXP3:-0.123222257476;STAT5{A,B}:-0.149466740281;PBX1:-0.16615625927;MYFfamily:-0.169586730428;PAX6:-0.192769763315;HMGA1,2:-0.194418683709;GATA4:-0.201149732132;POU6F1:-0.206668570472;HBP1_HMGB_SSRP1_UBTF:-0.206902050117;NFIL3:-0.221109554263;NKX3-2:-0.224592124625;SOX2:-0.236926103722;HOX{A4,D4}:-0.237137257599;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.244544786232;SOX5:-0.254999106701;BPTF:-0.286665361971;ZFP161:-0.286928977258;NFKB1_REL_RELA:-0.293947373352;SMAD1..7,9:-0.295592613981;CREB1:-0.305249998579;RORA:-0.3138157317;TFDP1:-0.319320710264;FOXA2:-0.32150392416;JUN:-0.321509263174;T:-0.346651633336;CDX1,2,4:-0.371024055288;HSF1,2:-0.386884800648;NRF1:-0.388093212896;MYOD1:-0.392344565288;MTF1:-0.395284458466;IRF1,2:-0.404491150998;ATF2:-0.405859249614;BREu{core}:-0.412106524828;POU5F1:-0.414866232332;RFX2..5_RFXANK_RFXAP:-0.417275011266;POU2F1..3:-0.429263165212;GCM1,2:-0.442310456911;IRF7:-0.443799439084;LMO2:-0.444273606192;SNAI1..3:-0.451586984582;SPI1:-0.473505489153;IKZF2:-0.478726012162;MYB:-0.479291010834;PAX2:-0.510321642435;TOPORS:-0.512788614156;ATF4:-0.516863949813;CUX2:-0.518521583909;FOXM1:-0.519319259538;POU3F1..4:-0.519515023375;FOX{D1,D2}:-0.539798971053;ATF5_CREB3:-0.549123434545;GATA6:-0.562620937335;CDC5L:-0.565635948236;SOX{8,9,10}:-0.566475694843;ETS1,2:-0.567211907736;PAX3,7:-0.576066565384;ZEB1:-0.594435086459;FOXP1:-0.599134740465;SPIB:-0.631374245684;ELF1,2,4:-0.655840552963;OCT4_SOX2{dimer}:-0.673678138381;FOXN1:-0.682640744183;NANOG:-0.720820460217;ALX1:-0.732525364568;HOXA9_MEIS1:-0.77316544319;HOX{A6,A7,B6,B7}:-0.780552739006;EP300:-0.811497500076;E2F1..5:-0.81621455474;ZBTB16:-0.838372724114;NFY{A,B,C}:-0.848674578466;TLX2:-1.13075368576;VSX1,2:-1.21408172618;PITX1..3:-1.59356786844
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11462-119B4;search_select_hide=table117:FF:11462-119B4
}}
}}

Latest revision as of 18:03, 4 June 2020

Name:Nucleus Pulposus Cell, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12063
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuespinal cord
dev stageNA
sexunknown
ageNA
cell typenucleus pulposus cell of intervertebral disc
cell lineNA
companySciencell
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:5299
catalog numberSC4805
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005335
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12063 CAGE DRX008383 DRR009255
Accession ID Hg19

Library idBAMCTSS
CNhs12063 DRZ000680 DRZ002065
Accession ID Hg38

Library idBAMCTSS
CNhs12063 DRZ012030 DRZ013415
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005335
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.CAGATC sRNA-Seq DRX037231 DRR041597
Accession ID Hg19

Library idBAMCTSS
SRhi10014.CAGATC DRZ007239


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.142
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.272
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.104
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.259
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0039
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.189
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.511
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.068
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.716
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.19
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0754
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.104
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.12
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0634
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0247
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.351
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0907
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.104
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.319
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.188
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0574
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.188
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.259
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.671
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12063

Jaspar motifP-value
MA0002.20.447
MA0003.10.315
MA0004.10.212
MA0006.10.941
MA0007.10.457
MA0009.10.456
MA0014.10.74
MA0017.10.296
MA0018.22.60967e-4
MA0019.10.763
MA0024.11.43226e-4
MA0025.10.314
MA0027.10.745
MA0028.10.208
MA0029.10.564
MA0030.10.222
MA0031.10.163
MA0035.20.556
MA0038.10.494
MA0039.20.271
MA0040.10.121
MA0041.10.386
MA0042.10.324
MA0043.10.0732
MA0046.10.198
MA0047.20.586
MA0048.10.102
MA0050.10.00172
MA0051.10.078
MA0052.10.68
MA0055.10.354
MA0057.10.878
MA0058.10.284
MA0059.10.421
MA0060.14.09376e-6
MA0061.10.9
MA0062.22.20804e-5
MA0065.20.292
MA0066.10.408
MA0067.10.0109
MA0068.10.376
MA0069.10.977
MA0070.10.414
MA0071.10.151
MA0072.10.703
MA0073.10.668
MA0074.10.15
MA0076.10.0576
MA0077.10.338
MA0078.10.916
MA0079.20.743
MA0080.21.9446e-8
MA0081.10.0109
MA0083.12.49335e-4
MA0084.10.533
MA0087.10.537
MA0088.10.838
MA0090.10.0101
MA0091.10.0382
MA0092.10.948
MA0093.10.309
MA0099.20.559
MA0100.10.338
MA0101.10.0741
MA0102.20.156
MA0103.10.565
MA0104.20.552
MA0105.10.309
MA0106.10.0519
MA0107.10.0704
MA0108.20.668
MA0111.10.605
MA0112.20.0195
MA0113.10.0498
MA0114.10.539
MA0115.10.115
MA0116.10.468
MA0117.10.23
MA0119.10.0771
MA0122.10.703
MA0124.10.244
MA0125.10.871
MA0131.10.249
MA0135.10.707
MA0136.13.41321e-11
MA0137.20.515
MA0138.20.346
MA0139.10.268
MA0140.10.402
MA0141.10.0398
MA0142.10.727
MA0143.10.38
MA0144.10.246
MA0145.10.787
MA0146.10.196
MA0147.10.82
MA0148.10.27
MA0149.10.109
MA0150.10.15
MA0152.10.0242
MA0153.10.386
MA0154.10.438
MA0155.10.148
MA0156.15.49648e-9
MA0157.10.556
MA0159.10.766
MA0160.10.651
MA0162.10.0608
MA0163.10.0208
MA0164.10.772
MA0258.10.559
MA0259.10.709



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12063

Novel motifP-value
10.751
100.728
1000.965
1010.284
1020.4
1030.102
1040.441
1050.555
1060.199
1070.0054
1080.159
1090.239
110.115
1100.251
1110.971
1120.98
1130.365
1140.917
1150.643
1160.0116
1170.563
1180.662
1190.772
120.298
1200.0291
1210.275
1220.0951
1230.0025
1240.558
1250.497
1260.457
1270.914
1280.104
1290.603
130.483
1300.484
1310.531
1320.0909
1330.682
1340.272
1350.418
1360.712
1370.0243
1380.662
1390.323
140.688
1400.375
1410.051
1420.3
1430.437
1440.897
1450.312
1460.388
1470.227
1480.877
1490.073
150.839
1500.708
1510.655
1520.203
1530.935
1540.0654
1550.284
1560.285
1570.739
1580.198
1590.299
160.06
1600.179
1610.684
1620.153
1630.887
1640.141
1650.221
1660.442
1670.27
1680.712
1690.0901
170.0991
180.0329
190.029
20.193
200.876
210.571
220.101
230.105
240.941
250.603
260.586
270.107
280.0639
290.118
30.243
300.168
310.354
326.3502e-10
330.168
340.576
350.494
360.178
370.0617
380.908
390.475
40.0927
400.96
410.0677
420.812
430.519
440.076
450.456
460.148
470.956
480.755
490.564
50.779
500.611
510.61
520.486
530.115
540.417
550.621
560.343
570.783
580.436
590.0191
60.661
600.445
610.755
620.935
630.527
640.778
650.148
660.786
670.881
680.34
690.0553
70.687
700.272
710.634
720.539
730.04
740.885
750.5
760.561
770.0489
780.813
790.182
80.0871
800.96
810.786
820.436
830.823
840.501
850.156
860.791
870.981
880.69
890.0135
90.133
900.439
910.685
920.0652
930.28
940.17
950.245
960.598
970.52
980.389
993.64488e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12063


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002564 (nucleus pulposus cell of intervertebral disc)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0011216 (organ system subdivision)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004905 (articulation)
0011135 (intervertebral cartilage)
0000075 (subdivision of skeletal system)
0002216 (symphysis)
0004765 (skeletal element)
0011134 (nonsynovial joint)
0002209 (fibrous joint)
0002213 (cartilaginous joint)
0000982 (skeletal joint)
0010317 (germ layer / neural crest derived structure)
0007844 (cartilage element)
0002242 (nucleus pulposus)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)
0011138 (post-cranial axial skeletal system)
0001130 (vertebral column)
0001066 (intervertebral disk)
0001468 (intervertebral joint)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000123 (human nucleus pulposus cell of intervertebral disc sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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