FF:11517-119H5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005877 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005877 | ||
|accession_numbers=CAGE;DRX008427;DRR009299;DRZ000724;DRZ002109;DRZ012074;DRZ013459 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037176;DRR041542;DRZ007184 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0004810,UBERON:0001285,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0007684,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518,CL:1000449,CL:1000507,CL:1000494 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000151 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.30!197.66!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!2.28!188.24!HNF1B;;chr1:201979703..201979721,+!p2@ELF3!2.08!120.01!ELF3;;chr17:46703687..46703740,-!p1@HOXB9!2.06!113.73!HOXB9;;chr1:201979743..201979762,+!p1@ELF3!1.98!94.12!ELF3;;chr17:46682321..46682362,-!p1@HOXB6!1.75!54.90!HOXB6;;chr6:134210243..134210257,+!p1@TCF21!1.67!45.49!TCF21;;chr16:86600426..86600441,+!p1@FOXC2!1.65!105.10!FOXC2;;chr7:27153454..27153469,-!p2@HOXA3!1.60!38.43!HOXA3;;chr6:34204921..34204939,+!p3@HMGA1!1.56!995.34!HMGA1;;chr7:27205136..27205164,-!p1@HOXA9!1.52!32.16!HOXA9;;chr17:35294075..35294102,+!p1@ENST00000559335!1.47!28.24!LHX1;;chr11:61520075..61520136,+!p1@C11orf9!1.46!57.26!C11orf9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!27.45!HOXC5;;chr17:46622205..46622218,-!p3@HOXB2!1.42!29.02!HOXB2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.42!25.10!POU3F3;;chr19:45260775..45260838,+!p5@BCL3!1.39!30.59!BCL3;;chr21:38071430..38071456,+!p1@SIM2!1.39!23.53!SIM2;;chr20:42295745..42295765,+!p1@MYBL2!1.37!349.82!MYBL2;;chr10:102505493..102505546,+!p2@PAX2!1.36!21.96!PAX2;;chr6:34204672..34204692,+!p1@HMGA1!1.35!2298.14!HMGA1;;chr20:42295713..42295738,+!p2@MYBL2!1.35!123.14!MYBL2;;chr7:27196217..27196246,-!p2@HOXA7!1.31!19.61!HOXA7;;chr7:27205106..27205134,-!p2@HOXA9!1.31!19.61!HOXA9;;chr17:46703826..46703845,-!p3@HOXB9!1.30!18.82!HOXB9;;chr5:2751762..2751784,-!p1@IRX2!1.26!17.26!IRX2;;chr5:72744594..72744609,-!p1@FOXD1!1.22!70.59!FOXD1;;chr7:27224795..27224840,-!p2@HOXA11!1.20!14.90!HOXA11;;chr7:27224842..27224872,-!p1@HOXA11!1.20!14.90!HOXA11;;chr17:41623692..41623715,-!p1@ETV4!1.18!59.61!ETV4;;chr12:66218255..66218304,+!p3@HMGA2!1.18!37.65!HMGA2;;chr1:209979467..209979494,-!p1@IRF6!1.18!15.69!IRF6;;chr11:32457075..32457095,-!p1@WT1!1.18!14.12!WT1;;chr17:46690839..46690884,-!p1@HOXB8!1.18!14.12!HOXB8;;chr19:17356436..17356481,-!p3@NR2F6!1.17!23.53!NR2F6;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.17!14.90!GLIS1;;chr17:46622229..46622257,-!p6@HOXB2!1.16!15.69!HOXB2;;chr7:27192185..27192209,-!p1@HOXA3!1.16!13.33!HOXA3;;chr12:54378923..54378966,+!p1@HOXC10!1.16!13.33!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!1.16!13.33!HOXC9;;chr20:31350184..31350200,+!p1@DNMT3B!1.13!25.88!DNMT3B;;chr20:50721803..50721857,-!p2@ZFP64!1.11!18.82!ZFP64;;chr5:3595934..3595957,+!p2@IRX1!1.11!11.77!IRX1;;chr17:46675558..46675577,-!p2@HOXB6!1.11!11.77!HOXB6;;chr2:5832508..5832524,+!p1@SOX11!1.11!11.77!SOX11;;chr2:176987441..176987454,+!p1@HOXD9!1.08!10.98!HOXD9;;chr2:176994408..176994492,+!p1@HOXD8!1.08!10.98!HOXD8;;chr7:27170359..27170381,-!p1@HOXA4!1.08!10.98!HOXA4;;chr7:27213893..27213954,-!p1@HOXA10!1.08!10.98!HOXA10;;chr17:46667594..46667619,-!p1@HOXB3!1.08!10.98!HOXB3;;chr12:3069037..3069119,+!p2@TEAD4!1.06!36.86!TEAD4;;chr17:41622765..41622821,-!p2@ETV4!1.05!15.69!ETV4;;chr16:54964740..54964789,+!p1@IRX5!1.05!14.90!IRX5;;chr17:36105074..36105086,-!p2@HNF1B!1.05!10.20!HNF1B;;chr10:102505327..102505344,+!p1@PAX2!1.05!10.20!PAX2;;chr3:52001448..52001478,-!p2@PCBP4!1.04!139.61!PCBP4;;chr11:65667846..65667868,-!p1@FOSL1!1.03!260.40!FOSL1;;chr17:38465413..38465438,+!p5@RARA!1.03!15.69!RARA;;chr11:65667884..65667895,-!p2@FOSL1!1.02!37.65!FOSL1;;chr6:10415276..10415341,-!p2@TFAP2A!1.02!11.77!TFAP2A;;chr5:3595977..3595999,+!p1@IRX1!1.02!9.41!IRX1;;chr16:51185172..51185197,-!p1@SALL1!1.02!9.41!SALL1;;chr17:7493405..7493419,-!p1@SOX15!1.02!9.41!SOX15;;chr2:177053386..177053402,+!p1@HOXD1!1.02!9.41!HOXD1;;chr5:72744445..72744466,-!p2@FOXD1!1.01!15.69!FOXD1;;chr7:44143925..44143970,+!p1@AEBP1!0.99!202.36!AEBP1;;chr3:52001426..52001447,-!p3@PCBP4!0.99!25.10!PCBP4;;chr3:69811858..69811881,+!p5@MITF!0.98!8.63!MITF;;chr7:27153428..27153440,-!p3@HOXA3!0.98!8.63!HOXA3;;chr16:86600870..86600921,+!p2@FOXC2!0.98!8.63!FOXC2;;chr12:54379029..54379057,+!p2@HOXC10!0.98!8.63!HOXC10;;chr19:49865646..49865718,-!p1@TEAD2!0.96!71.38!TEAD2;;chr12:2986206..2986258,-!p2@FOXM1!0.96!50.20!FOXM1;;chr2:239148671..239148686,-!p1@HES6!0.96!30.59!HES6;;chr14:21994337..21994442,-!p1@SALL2!0.96!22.75!SALL2;;chr17:41623009..41623053,-!p4@ETV4!0.96!13.33!ETV4;;chr16:54320158..54320200,-!p5@IRX3!0.96!11.77!IRX3;;chr17:46622070..46622109,-!p1@HOXB2!0.95!18.04!HOXB2;;chr21:38071403..38071428,+!p2@SIM2!0.95!7.84!SIM2;;chr6:50786591..50786614,+!p1@TFAP2B!0.95!7.84!TFAP2B;;chr7:27196267..27196311,-!p1@HOXA7!0.95!7.84!HOXA7;;chr17:70117153..70117174,+!p1@SOX9!0.94!82.36!SOX9;;chr3:52001396..52001425,-!p4@PCBP4!0.94!14.12!PCBP4;;chr12:66218003..66218018,+!p9@HMGA2!0.94!9.41!HMGA2;;chr17:46622440..46622477,-!p5@HOXB2!0.94!8.63!HOXB2;;chr1:935467..935484,-!p1@HES4!0.93!34.51!HES4;;chr16:54320675..54320715,-!p1@IRX3!0.93!16.47!IRX3;;chr12:54447599..54447630,+!p3@HOXC4!0.93!9.41!HOXC4;;chr7:28448965..28448994,+!p2@CREB5!0.92!26.67!CREB5;;chr11:63684602..63684664,-!p1@RCOR2!0.92!14.90!RCOR2;;chr16:86600458..86600461,+!p3@FOXC2!0.91!7.06!FOXC2;;chr17:46667561..46667572,-!p4@HOXB3!0.91!7.06!HOXB3;;c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| |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.30!197.66!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!2.28!188.24!HNF1B;;chr1:201979703..201979721,+!p2@ELF3!2.08!120.01!ELF3;;chr17:46703687..46703740,-!p1@HOXB9!2.06!113.73!HOXB9;;chr1:201979743..201979762,+!p1@ELF3!1.98!94.12!ELF3;;chr17:46682321..46682362,-!p1@HOXB6!1.75!54.90!HOXB6;;chr6:134210243..134210257,+!p1@TCF21!1.67!45.49!TCF21;;chr16:86600426..86600441,+!p1@FOXC2!1.65!105.10!FOXC2;;chr7:27153454..27153469,-!p2@HOXA3!1.60!38.43!HOXA3;;chr6:34204921..34204939,+!p3@HMGA1!1.56!995.34!HMGA1;;chr7:27205136..27205164,-!p1@HOXA9!1.52!32.16!HOXA9;;chr17:35294075..35294102,+!p1@ENST00000559335!1.47!28.24!LHX1;;chr11:61520075..61520136,+!p1@C11orf9!1.46!57.26!C11orf9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.45!27.45!HOXC5;;chr17:46622205..46622218,-!p3@HOXB2!1.42!29.02!HOXB2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.42!25.10!POU3F3;;chr19:45260775..45260838,+!p5@BCL3!1.39!30.59!BCL3;;chr21:38071430..38071456,+!p1@SIM2!1.39!23.53!SIM2;;chr20:42295745..42295765,+!p1@MYBL2!1.37!349.82!MYBL2;;chr10:102505493..102505546,+!p2@PAX2!1.36!21.96!PAX2;;chr6:34204672..34204692,+!p1@HMGA1!1.35!2298.14!HMGA1;;chr20:42295713..42295738,+!p2@MYBL2!1.35!123.14!MYBL2;;chr7:27196217..27196246,-!p2@HOXA7!1.31!19.61!HOXA7;;chr7:27205106..27205134,-!p2@HOXA9!1.31!19.61!HOXA9;;chr17:46703826..46703845,-!p3@HOXB9!1.30!18.82!HOXB9;;chr5:2751762..2751784,-!p1@IRX2!1.26!17.26!IRX2;;chr5:72744594..72744609,-!p1@FOXD1!1.22!70.59!FOXD1;;chr7:27224795..27224840,-!p2@HOXA11!1.20!14.90!HOXA11;;chr7:27224842..27224872,-!p1@HOXA11!1.20!14.90!HOXA11;;chr17:41623692..41623715,-!p1@ETV4!1.18!59.61!ETV4;;chr12:66218255..66218304,+!p3@HMGA2!1.18!37.65!HMGA2;;chr1:209979467..209979494,-!p1@IRF6!1.18!15.69!IRF6;;chr11:32457075..32457095,-!p1@WT1!1.18!14.12!WT1;;chr17:46690839..46690884,-!p1@HOXB8!1.18!14.12!HOXB8;;chr19:17356436..17356481,-!p3@NR2F6!1.17!23.53!NR2F6;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.17!14.90!GLIS1;;chr17:46622229..46622257,-!p6@HOXB2!1.16!15.69!HOXB2;;chr7:27192185..27192209,-!p1@HOXA3!1.16!13.33!HOXA3;;chr12:54378923..54378966,+!p1@HOXC10!1.16!13.33!HOXC10;;chr12:54393880..54393962,+!p1@HOXC9!1.16!13.33!HOXC9;;chr20:31350184..31350200,+!p1@DNMT3B!1.13!25.88!DNMT3B;;chr20:50721803..50721857,-!p2@ZFP64!1.11!18.82!ZFP64;;chr5:3595934..3595957,+!p2@IRX1!1.11!11.77!IRX1;;chr17:46675558..46675577,-!p2@HOXB6!1.11!11.77!HOXB6;;chr2:5832508..5832524,+!p1@SOX11!1.11!11.77!SOX11;;chr2:176987441..176987454,+!p1@HOXD9!1.08!10.98!HOXD9;;chr2:176994408..176994492,+!p1@HOXD8!1.08!10.98!HOXD8;;chr7:27170359..27170381,-!p1@HOXA4!1.08!10.98!HOXA4;;chr7:27213893..27213954,-!p1@HOXA10!1.08!10.98!HOXA10;;chr17:46667594..46667619,-!p1@HOXB3!1.08!10.98!HOXB3;;chr12:3069037..3069119,+!p2@TEAD4!1.06!36.86!TEAD4;;chr17:41622765..41622821,-!p2@ETV4!1.05!15.69!ETV4;;chr16:54964740..54964789,+!p1@IRX5!1.05!14.90!IRX5;;chr17:36105074..36105086,-!p2@HNF1B!1.05!10.20!HNF1B;;chr10:102505327..102505344,+!p1@PAX2!1.05!10.20!PAX2;;chr3:52001448..52001478,-!p2@PCBP4!1.04!139.61!PCBP4;;chr11:65667846..65667868,-!p1@FOSL1!1.03!260.40!FOSL1;;chr17:38465413..38465438,+!p5@RARA!1.03!15.69!RARA;;chr11:65667884..65667895,-!p2@FOSL1!1.02!37.65!FOSL1;;chr6:10415276..10415341,-!p2@TFAP2A!1.02!11.77!TFAP2A;;chr5:3595977..3595999,+!p1@IRX1!1.02!9.41!IRX1;;chr16:51185172..51185197,-!p1@SALL1!1.02!9.41!SALL1;;chr17:7493405..7493419,-!p1@SOX15!1.02!9.41!SOX15;;chr2:177053386..177053402,+!p1@HOXD1!1.02!9.41!HOXD1;;chr5:72744445..72744466,-!p2@FOXD1!1.01!15.69!FOXD1;;chr7:44143925..44143970,+!p1@AEBP1!0.99!202.36!AEBP1;;chr3:52001426..52001447,-!p3@PCBP4!0.99!25.10!PCBP4;;chr3:69811858..69811881,+!p5@MITF!0.98!8.63!MITF;;chr7:27153428..27153440,-!p3@HOXA3!0.98!8.63!HOXA3;;chr16:86600870..86600921,+!p2@FOXC2!0.98!8.63!FOXC2;;chr12:54379029..54379057,+!p2@HOXC10!0.98!8.63!HOXC10;;chr19:49865646..49865718,-!p1@TEAD2!0.96!71.38!TEAD2;;chr12:2986206..2986258,-!p2@FOXM1!0.96!50.20!FOXM1;;chr2:239148671..239148686,-!p1@HES6!0.96!30.59!HES6;;chr14:21994337..21994442,-!p1@SALL2!0.96!22.75!SALL2;;chr17:41623009..41623053,-!p4@ETV4!0.96!13.33!ETV4;;chr16:54320158..54320200,-!p5@IRX3!0.96!11.77!IRX3;;chr17:46622070..46622109,-!p1@HOXB2!0.95!18.04!HOXB2;;chr21:38071403..38071428,+!p2@SIM2!0.95!7.84!SIM2;;chr6:50786591..50786614,+!p1@TFAP2B!0.95!7.84!TFAP2B;;chr7:27196267..27196311,-!p1@HOXA7!0.95!7.84!HOXA7;;chr17:70117153..70117174,+!p1@SOX9!0.94!82.36!SOX9;;chr3:52001396..52001425,-!p4@PCBP4!0.94!14.12!PCBP4;;chr12:66218003..66218018,+!p9@HMGA2!0.94!9.41!HMGA2;;chr17:46622440..46622477,-!p5@HOXB2!0.94!8.63!HOXB2;;chr1:935467..935484,-!p1@HES4!0.93!34.51!HES4;;chr16:54320675..54320715,-!p1@IRX3!0.93!16.47!IRX3;;chr12:54447599..54447630,+!p3@HOXC4!0.93!9.41!HOXC4;;chr7:28448965..28448994,+!p2@CREB5!0.92!26.67!CREB5;;chr11:63684602..63684664,-!p1@RCOR2!0.92!14.90!RCOR2;;chr16:86600458..86600461,+!p3@FOXC2!0.91!7.06!FOXC2;;chr17:46667561..46667572,-!p4@HOXB3!0.91!7.06!HOXB3;;chr2:122042770..122042785,-!p1@TFCP2L1!0.91!7.06!TFCP2L1;;chr3:69811882..69811898,+!p6@MITF!0.91!7.06!MITF;;chr16:8962853..8962878,-!p1@CARHSP1!0.90!429.04!CARHSP1;;chr16:29817789..29817838,+!p2@MAZ!0.90!98.04!MAZ;;chr17:46688334..46688385,-!p1@HOXB7!0.90!10.20!HOXB7;;chr12:66218183..66218209,+!p4@HMGA2!0.89!13.33!HMGA2;;chr6:34204642..34204664,+!p2@HMGA1!0.88!938.08!HMGA1;;chr12:2986275..2986363,-!p1@FOXM1!0.88!69.02!FOXM1;;chr19:19516464..19516492,+!p4@GATAD2A!0.88!34.51!GATAD2A;;chr6:1610293..1610310,+!p1@FOXC1!0.87!10.98!FOXC1;;chr17:41622834..41622883,-!p6@ETV4!0.87!7.84!ETV4;;chr20:32274179..32274213,-!p1@E2F1!0.86!43.92!E2F1;;chr11:65686952..65686975,+!p5@DRAP1!0.86!36.08!DRAP1;;chr22:41697497..41697515,+!p2@ZC3H7B!0.86!18.04!ZC3H7B;;chr11:46299539..46299620,+!p2@CREB3L1!0.86!10.98!CREB3L1;;chr10:102505954..102505973,+!p3@PAX2!0.86!6.27!PAX2;;chr17:46667628..46667642,-!p2@HOXB3!0.86!6.27!HOXB3;;chr17:46671504..46671541,-!p2@HOXB5!0.86!6.27!HOXB5;;chr17:46692318..46692362,-!p5@HOXB8!0.86!6.27!HOXB8;;chr7:27196196..27196210,-!p5@HOXA7!0.86!6.27!HOXA7;;chr7:27219754..27219759,-!p16@HOXA10!0.86!6.27!HOXA10;;chr2:176969228..176969260,+!p1@HOXD11!0.86!6.27!HOXD11;;chr6:41514078..41514158,+!p1@FOXP4!0.85!58.83!FOXP4;;chr17:7492684..7492778,-!p2@SOX15!0.85!13.33!SOX15;;chr17:41622925..41622976,-!p3@ETV4!0.85!9.41!ETV4;;chr15:83953397..83953425,-!p1@BNC1!0.85!7.06!BNC1;;chr15:67357924..67357952,+!p2@SMAD3!0.84!42.35!SMAD3;;chr5:176738887..176738934,-!p1@MXD3!0.84!42.35!MXD3;;chr16:29818160..29818188,+!p6@MAZ!0.84!29.81!MAZ;;chr12:66218598..66218645,+!p2@HMGA2!0.84!29.02!HMGA2;;chr8:145669791..145669834,-!p1@TONSL!0.84!18.04!TONSL;;chr16:8962544..8962584,-!p2@CARHSP1!0.84!14.12!CARHSP1;;chr16:54320101..54320125,-!p4@IRX3!0.84!8.63!IRX3;;chr17:3571887..3571918,-!p2@TAX1BP3!0.83!69.81!TAX1BP3;;chr14:61116183..61116208,-!p1@SIX1!0.83!23.53!SIX1;;chr6:34204973..34204990,+!p4@HMGA1!0.82!80.79!HMGA1;;chr11:46299199..46299233,+!p1@CREB3L1!0.82!31.37!CREB3L1;;chr1:8938766..8938774,-!p2@ENO1!0.81!406.29!ENO1;;chr7:44143738..44143760,+!p4@AEBP1!0.81!6.27!AEBP1;;chr5:3595961..3595975,+!p3@IRX1!0.81!5.49!IRX1;;chr7:27219833..27219845,-!p7@HOXA10!0.81!5.49!HOXA10;;chr11:32457413..32457431,-!p2@WT1!0.81!5.49!WT1;;chr17:46692457..46692484,-!p2@HOXB8!0.81!5.49!HOXB8;;chr17:46692624..46692659,-!p3@HOXB8!0.81!5.49!HOXB8;;chr2:45236540..45236577,-!p1@SIX2!0.81!5.49!SIX2;;chr9:4300050..4300118,-!p1@GLIS3!0.79!36.86!GLIS3;;chr11:65686802..65686818,+!p6@DRAP1!0.79!9.41!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!0.79!7.84!HMGA2;;chr20:50159198..50159299,-!p1@NFATC2!0.79!7.84!NFATC2;;chr8:128748308..128748324,+!p2@MYC!0.78!153.73!MYC;;chr16:29817841..29817865,+!p1@MAZ!0.78!116.87!MAZ;;chr19:59031131..59031193,-!p1@ZBTB45!0.78!71.38!ZBTB45;;chr12:124873852..124873881,-!p3@NCOR2!0.78!32.94!NCOR2;;chr19:45252008..45252024,+!p2@BCL3!0.78!18.04!BCL3;;chr17:3571863..3571881,-!p1@TAX1BP3!0.77!380.41!TAX1BP3;;chr19:46271505..46271575,-!p2@SIX5!0.77!13.33!SIX5;;chr19:57183114..57183145,-!p1@ZNF835!0.77!5.49!ZNF835;;chr19:56652643..56652683,+!p1@ZNF444!0.76!28.24!ZNF444;;chr10:48355030..48355090,+!p1@ZNF488!0.76!6.27!ZNF488;;chr1:54203698..54203719,-!p@chr1:54203698..54203719,-!0.76!4.71!GLIS1;;chr16:51185573..51185593,-!p3@SALL1!0.76!4.71!SALL1;;chr16:54964899..54964914,+!p2@IRX5!0.76!4.71!IRX5;;chr17:41622731..41622764,-!p5@ETV4!0.76!4.71!ETV4;;chr17:46703212..46703238,-!p2@HOXB9!0.76!4.71!HOXB9;;chr5:2751785..2751808,-!p2@IRX2!0.76!4.71!IRX2;;chr6:34210478..34210481,+!p8@HMGA1!0.76!4.71!HMGA1;;chr7:27183291..27183324,-!p1@HOXA5!0.76!4.71!HOXA5;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.76!4.71!POU3F3;;chr2:176987463..176987479,+!p2@HOXD9!0.76!4.71!HOXD9;;chr2:177016272..177016286,+!p2@HOXD4!0.76!4.71!HOXD4;;chr2:177016336..177016350,+!p1@HOXD4!0.76!4.71!HOXD4;;chr2:45236579..45236596,-!p2@SIX2!0.76!4.71!SIX2;;chr4:299227..299272,-!p1@ZNF732!0.76!4.71!ZNF732;;chr10:135122380..135122458,+!p1@ZNF511!0.75!157.65!ZNF511;;chr19:45251943..45252006,+!p1@BCL3!0.75!134.91!BCL3;;chr19:1863591..1863611,-!p2@KLF16!0.75!49.41!KLF16;;chr19:19516507..19516539,+!p7@GATAD2A!0.75!14.90!GATAD2A;;chr17:46675420..46675465,-!p3@HOXB6!0.75!5.49!HOXB6;;chr19:6424783..6424802,-!p2@KHSRP!0.74!101.18!KHSRP;;chr2:242576460..242576600,-!p1@THAP4!0.74!75.30!THAP4;;chr11:65687362..65687436,+!p3@DRAP1!0.74!22.75!DRAP1;;chr16:29818199..29818216,+!p11@MAZ!0.74!7.84!MAZ;;chr2:25475120..25475176,-!p2@DNMT3A!0.74!6.27!DNMT3A;;chr17:38498510..38498540,+!p7@RARA!0.74!5.49!RARA;;chr19:6424813..6424835,-!p1@KHSRP!0.73!304.33!KHSRP;;chr19:1863568..1863586,-!p1@KLF16!0.73!159.22!KLF16;;chr19:3572925..3573014,+!p1@HMG20B!0.73!144.32!HMG20B;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.73!49.41!GLIS2;;chr11:65686732..65686756,+!p2@DRAP1!0.73!20.39!DRAP1;;chr14:21994449..21994524,-!p2@SALL2!0.73!14.12!SALL2;;chr12:66218378..66218401,+!p6@HMGA2!0.73!7.06!HMGA2;;chr19:49864746..49864780,-!p2@TEAD2!0.73!6.27!TEAD2;;chr12:132628963..132629027,+!p1@NOC4L!0.72!69.02!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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11332.11517-119H5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11332.11517-119H5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11332.11517-119H5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11332.11517-119H5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor1.CNhs11332.11517-119H5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11517-119H5 | |id=FF:11517-119H5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000151 | ||
|is_obsolete= | |||
|library_id=CNhs11332 | |||
|library_id_phase_based=2:CNhs11332 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11517 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.CCGTCC.11517 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11517 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.CCGTCC.11517 | |||
|name=Renal Epithelial Cells, donor1 | |name=Renal Epithelial Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11332,LSID768,release014,COMPLETED | |profile_hcage=CNhs11332,LSID768,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10011,,, | |profile_srnaseq=SRhi10011,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.125739994508404,0,0,0,0,0.0911619589304219,0,0.132351175472454,-0.156663566068538,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981569786683804,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.251479989016808,0,0.155085441407118,0,0,0,0,0,0,0,0,0.101524973395569,0,0,0,0,0,0.184308170917148,0.251479989016808,-0.0969923612426051,0,0,0.154136361803711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0602034940068819,0.291800967963802,0,0,0,0.312624783766842,0.134862321366888,0,0,0,0,-0.0980353512377064,-0.012737206292491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.109070653027179,0.260231533959059,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,-0.247178875285564,0.0232486483804471,0.387734729136282,0.107964846493336,0,0,-0.222422433076586,0,0,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,0,-0.0539922418815993,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,0.0603559790070637,0,-0.120879483793741,0.168759820693391,0.188101719563161,0.29948542426539,-0.055712496781182,0,0,0,-0.218123103736375,-0.156557965504598,0,0,0.489409221146755,-0.055609624052255,0,0,-0.391044581551635,0,-0.209252635492213,0.222931668188908,0,-0.248910899051992,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.326988596678969,0,0,0.409713307665968,0,0.10314630284894,0.251479989016808,0.000134095765187386,0.152153783941383,0.511084934591432,0.0962328283474775,0.852696475141737,0,-0.0509097379931052,-0.0078601035524315,0.00264427088720051,0.383325060731916,0.664872851138601,0.219731588116121,0.157751686425161,-0.0373976224250646,0.393230210546916,0.126391294523888,0.496353439004554,0.130130395514849,0.477847755463648,0.703470934124112,0,0.409713307665968,0.00190314330256702,-0.148416374040031,0,0,-0.238634725459966,0.0947155368875875,0.335358366625667,0.215978486949952,0.358875898860417,0.115831713678401,0.0862074660517335,0.234682995228919,0.0745597957954671,-0.158852354954724,0,0,0.0157773688093953,0.0148600793790702,0.263172000351524,0.563676666482249,0.0195451847415932,-0.0742641541450126,0.18313572793944,0,0.4641852297315,0.513594863359824,0.692119448125514,0,0.233497469638328,0,0,0,0,0,0.20748915901635,-0.129778835364198,0.0186244274612632,0,0.178812292764002,-0.00897492864797233,0.234591264410688,0,0.205139434060721,0.113423163787944,0,0.051139490052398,0,0.262408453523342,-0.171221929050163,-0.0183195767710267,0.269724642733776,0.351266480854143,-0.320758626109763,-0.0916532385529276,0.0704650896966867,-0.096820416664713,0.115564502767327,-0.0881268324752877,0,-0.473831442852412,-0.269784823955556,0.09835947596703,0.361379259798738,0,-0.19541973489843,0,-0.480188824594223,0,0.536660941849339,0.271840949036499,0.372985325929053,-0.873708306165427,0,0.334913161568872,-0.0317916647384415,0.251479989016808,0.556396304278731,0,0.616727413197398,-0.150367083334639,0.248928100287758,-0.0859104333561851,0.112490532337613,0,-0.0337408853541241,0,0,-0.140104403530685,-0.235476037764389,0,0.454620637855103,0.147136358822136,0.152123231840238,0.576148374690579,0.251479989016808,0,0.71530546963477,0,0.692119448125514,0.953927586805675,0.187875143879006,0.581686056974331,0.156386966179212,0.0126543249385793,0.508104603743142,0,0,-0.177527765965176,0,0.073721289608472,0,0,0.32120237994885,0,0,0,0,-0.192857719909341,0,0,0,0,0,0,0,-0.724816728306688,-0.10335334119964,0,0.725226150082432,0,0,0,0.906289127155172,0,0,0,0,-0.350004495375877,0.06948603895118,-0.12301741567642,0.125739994508404,0,0,0,0.0357565864633334,0.0482434269220842,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0.125739994508404,-0.057730457053664,0.391824750806113,0,0,0,-0.27695440160179,0,0,0,0,-0.261730914161696,0,0,0,0,0.298856648236163,0.169898109469967,0,0.0210483814488852,0.749100504649955,1.35814543753893,0,0,0.355380281407511,0,0,-1.03594432163325,0.310910767913844,0.251479989016808,0,0,0,0,0,0,0,0.0371654766170524,0,0,0,0,0,0,0,0,0,0,0,-0.271004982598869,-0.0922240566585104,0,0,0,0,0,0,0,0.101633971429501,-0.201553809948104,0,0,0,0,0,0,0,0,-0.061712631997274,0,0,0,0,0,-0.0969923612426051,0,0,0,0.251479989016808,-0.313327132137076,0,0,0.132351175472454,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.337647150274859,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,0.0911619589304219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.249781577908833,0.0817553910330515,0.122505791693058,0.103276685258937,0,0,-0.232628352633041,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,-0.0979578962680575,0.251479989016808,0,-0.0920328098005262,0,0,0,0,0.514283118991795,0,0.512151466392713,0.356613581892817,0.215287499086984,0,0,0,-0.054385572482455,0,0,0.251479989016808,0.251479989016808,-0.0667773874189013,0,0,0,0,0,0,0,0,0.251479989016808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981569786683804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251479989016808,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120011072947555,0,0,0,0,0,0,0,0,0.251479989016808,0,0,0,0,-0.0482220752390542,0,0.325336675435941,0,0,0.251479989016808,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.0383114967065509,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.253610608288505,0,0,0.116075222384148,0,0,0,0,0,0,0,0,0,0,0,0,0.190159809866682,0,0,0,0,0,0,0,0,0,0,0.203049946791139,0,0,0,0,0,0,0,0,0.94662406680034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.080349551987089,0.11950568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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC4125 | |rna_catalog_number=SC4125 | ||
| Line 56: | Line 81: | ||
|rna_tube_id=119H5 | |rna_tube_id=119H5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10011.CCGTCC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=lot:0546 | |sample_cell_catalog=lot:0546 | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 96: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.5296295958441e-216!GO:0005737;cytoplasm;1.45551920691467e-173!GO:0043226;organelle;2.17050851633684e-158!GO:0043229;intracellular organelle;2.86665007937897e-158!GO:0043231;intracellular membrane-bound organelle;3.6222481905241e-150!GO:0043227;membrane-bound organelle;9.02193977472901e-150!GO:0044444;cytoplasmic part;8.19287524819507e-121!GO:0044422;organelle part;7.07817774799807e-120!GO:0044446;intracellular organelle part;8.01178421253383e-119!GO:0005515;protein binding;2.42779695221312e-74!GO:0032991;macromolecular complex;1.66854576792506e-68!GO:0044237;cellular metabolic process;1.70859099950365e-66!GO:0044238;primary metabolic process;4.9165996090828e-66!GO:0005739;mitochondrion;7.80049052500753e-64!GO:0030529;ribonucleoprotein complex;3.46555752820698e-62!GO:0043170;macromolecule metabolic process;2.69498280836225e-57!GO:0043233;organelle lumen;7.80542897868352e-52!GO:0031974;membrane-enclosed lumen;7.80542897868352e-52!GO:0005634;nucleus;5.43895755827191e-50!GO:0044428;nuclear part;6.8753194749237e-48!GO:0031090;organelle membrane;2.0446304241352e-45!GO:0005840;ribosome;9.72399559352212e-45!GO:0003723;RNA binding;8.28443992919395e-44!GO:0016043;cellular component organization and biogenesis;8.28443992919395e-44!GO:0044429;mitochondrial part;2.21517011791156e-41!GO:0009058;biosynthetic process;2.99678698405122e-41!GO:0019538;protein metabolic process;5.13044493400765e-41!GO:0006412;translation;4.12146467690478e-40!GO:0003735;structural constituent of ribosome;7.68805970191578e-40!GO:0044249;cellular biosynthetic process;3.59772627642386e-38!GO:0044260;cellular macromolecule metabolic process;5.32819783114994e-37!GO:0044267;cellular protein metabolic process;1.07585715219807e-36!GO:0031967;organelle envelope;4.36553658547295e-36!GO:0031975;envelope;1.01084870306235e-35!GO:0006996;organelle organization and biogenesis;5.60385437963103e-35!GO:0043234;protein complex;1.6786899540992e-34!GO:0033279;ribosomal subunit;2.91308869586969e-34!GO:0043228;non-membrane-bound organelle;2.36191904301419e-33!GO:0043232;intracellular non-membrane-bound organelle;2.36191904301419e-33!GO:0009059;macromolecule biosynthetic process;2.99713957419179e-33!GO:0043283;biopolymer metabolic process;3.24041502572665e-31!GO:0006396;RNA processing;1.42854605218607e-30!GO:0005829;cytosol;2.77644628198034e-30!GO:0015031;protein transport;2.77644628198034e-30!GO:0033036;macromolecule localization;3.04663126966928e-30!GO:0031981;nuclear lumen;6.40362805331113e-29!GO:0005740;mitochondrial envelope;9.20373152050807e-29!GO:0008104;protein localization;1.5846992250472e-28!GO:0045184;establishment of protein localization;1.17045908427342e-27!GO:0046907;intracellular transport;7.97296924653537e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.61131912890419e-26!GO:0031966;mitochondrial membrane;1.64303485186343e-26!GO:0019866;organelle inner membrane;2.25257523733615e-26!GO:0005743;mitochondrial inner membrane;6.12282870493774e-25!GO:0006259;DNA metabolic process;1.85772668938237e-24!GO:0065003;macromolecular complex assembly;5.37951740881262e-24!GO:0016071;mRNA metabolic process;7.06917238442009e-24!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.41168784590202e-23!GO:0010467;gene expression;1.55267403361059e-23!GO:0007049;cell cycle;1.6358743383366e-22!GO:0022607;cellular component assembly;6.78316381668636e-22!GO:0006886;intracellular protein transport;2.75591819599608e-21!GO:0008380;RNA splicing;6.4504565293929e-21!GO:0044445;cytosolic part;9.81441168822391e-21!GO:0006397;mRNA processing;2.22597593875293e-20!GO:0022402;cell cycle process;4.36144636700527e-18!GO:0000166;nucleotide binding;4.38914113862089e-18!GO:0015934;large ribosomal subunit;6.58521255053558e-18!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.20456282147337e-17!GO:0015935;small ribosomal subunit;2.28420087066468e-17!GO:0012505;endomembrane system;2.88091870848393e-17!GO:0051641;cellular localization;4.86517521676316e-17!GO:0051649;establishment of cellular localization;6.31316857862457e-17!GO:0005654;nucleoplasm;6.54932838817943e-17!GO:0000278;mitotic cell cycle;3.22689736275424e-16!GO:0031980;mitochondrial lumen;4.15319018142263e-16!GO:0005759;mitochondrial matrix;4.15319018142263e-16!GO:0008134;transcription factor binding;4.26798168752624e-16!GO:0006119;oxidative phosphorylation;5.67933339621282e-16!GO:0005783;endoplasmic reticulum;1.42296565996915e-15!GO:0048770;pigment granule;1.87478496535735e-15!GO:0042470;melanosome;1.87478496535735e-15!GO:0005681;spliceosome;2.66685645705001e-15!GO:0044455;mitochondrial membrane part;3.61424515490347e-15!GO:0043412;biopolymer modification;5.65340821775805e-15!GO:0016462;pyrophosphatase activity;7.5578732046656e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.13663456522743e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.23015508371303e-14!GO:0016874;ligase activity;2.16631139135755e-14!GO:0017111;nucleoside-triphosphatase activity;4.17934054779526e-14!GO:0051186;cofactor metabolic process;4.30021852363941e-14!GO:0005794;Golgi apparatus;6.18551021254819e-14!GO:0032553;ribonucleotide binding;8.08642442613663e-14!GO:0032555;purine ribonucleotide binding;8.08642442613663e-14!GO:0044451;nucleoplasm part;1.07171842666955e-13!GO:0006464;protein modification process;1.07171842666955e-13!GO:0006457;protein folding;1.46144300979357e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.69954452002003e-13!GO:0044432;endoplasmic reticulum part;1.90394503157453e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.19529457583713e-13!GO:0051276;chromosome organization and biogenesis;3.16712942011882e-13!GO:0017076;purine nucleotide binding;3.33692934734932e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;5.23579726134337e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.35265424729167e-12!GO:0006512;ubiquitin cycle;1.39765724983635e-12!GO:0005746;mitochondrial respiratory chain;1.41031036493076e-12!GO:0050136;NADH dehydrogenase (quinone) activity;1.59432901435556e-12!GO:0003954;NADH dehydrogenase activity;1.59432901435556e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.59432901435556e-12!GO:0022403;cell cycle phase;1.66744481582811e-12!GO:0005730;nucleolus;2.2413578981387e-12!GO:0006605;protein targeting;4.32893632162176e-12!GO:0006323;DNA packaging;4.35643083421582e-12!GO:0012501;programmed cell death;4.9089085979593e-12!GO:0005524;ATP binding;5.08264891807445e-12!GO:0032559;adenyl ribonucleotide binding;5.86196928099627e-12!GO:0006915;apoptosis;1.10019985157787e-11!GO:0044265;cellular macromolecule catabolic process;1.86896450138669e-11!GO:0043687;post-translational protein modification;2.66223516833135e-11!GO:0005694;chromosome;2.74830420709839e-11!GO:0030554;adenyl nucleotide binding;3.24658049169579e-11!GO:0006732;coenzyme metabolic process;4.15312261507566e-11!GO:0044427;chromosomal part;4.83873662800799e-11!GO:0005761;mitochondrial ribosome;5.41148404582811e-11!GO:0000313;organellar ribosome;5.41148404582811e-11!GO:0007067;mitosis;6.1050138729165e-11!GO:0008219;cell death;9.35455914726462e-11!GO:0016265;death;9.35455914726462e-11!GO:0000087;M phase of mitotic cell cycle;1.03585869474991e-10!GO:0051726;regulation of cell cycle;1.10240929064205e-10!GO:0000074;regulation of progression through cell cycle;1.82579398193212e-10!GO:0000785;chromatin;2.64070770088883e-10!GO:0006974;response to DNA damage stimulus;2.74278057367938e-10!GO:0042775;organelle ATP synthesis coupled electron transport;2.86570478026199e-10!GO:0042773;ATP synthesis coupled electron transport;2.86570478026199e-10!GO:0030964;NADH dehydrogenase complex (quinone);3.02431152249564e-10!GO:0045271;respiratory chain complex I;3.02431152249564e-10!GO:0005747;mitochondrial respiratory chain complex I;3.02431152249564e-10!GO:0016740;transferase activity;3.18863399190411e-10!GO:0044248;cellular catabolic process;3.28786265479102e-10!GO:0022618;protein-RNA complex assembly;5.46840814274964e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.22066235542063e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.62211904556784e-10!GO:0003712;transcription cofactor activity;6.77810129070853e-10!GO:0005789;endoplasmic reticulum membrane;6.85187255568511e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.97366658398444e-10!GO:0009057;macromolecule catabolic process;9.61132982496771e-10!GO:0043285;biopolymer catabolic process;1.21434840788785e-09!GO:0006333;chromatin assembly or disassembly;1.95800431960472e-09!GO:0051082;unfolded protein binding;2.06234122766538e-09!GO:0000502;proteasome complex (sensu Eukaryota);2.14472171236529e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;2.19232795577765e-09!GO:0048523;negative regulation of cellular process;2.20510310917671e-09!GO:0043067;regulation of programmed cell death;2.27114843840967e-09!GO:0019941;modification-dependent protein catabolic process;2.71835546333336e-09!GO:0043632;modification-dependent macromolecule catabolic process;2.71835546333336e-09!GO:0042981;regulation of apoptosis;2.79021290628333e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;3.17341732409173e-09!GO:0000375;RNA splicing, via transesterification reactions;3.17341732409173e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.17341732409173e-09!GO:0009055;electron carrier activity;4.22452372801417e-09!GO:0006511;ubiquitin-dependent protein catabolic process;4.28007179781217e-09!GO:0065004;protein-DNA complex assembly;4.63558063470076e-09!GO:0003676;nucleic acid binding;4.82431786904077e-09!GO:0044257;cellular protein catabolic process;4.82431786904077e-09!GO:0000279;M phase;5.68255686822541e-09!GO:0048193;Golgi vesicle transport;7.09858596181837e-09!GO:0051301;cell division;9.49494783665233e-09!GO:0005635;nuclear envelope;1.1141371556071e-08!GO:0006260;DNA replication;1.42729805949147e-08!GO:0006334;nucleosome assembly;1.47983280706582e-08!GO:0031497;chromatin assembly;1.47983280706582e-08!GO:0015630;microtubule cytoskeleton;2.08442097267463e-08!GO:0006913;nucleocytoplasmic transport;2.15348647010926e-08!GO:0048519;negative regulation of biological process;2.15356781342891e-08!GO:0051188;cofactor biosynthetic process;2.25756834405181e-08!GO:0009719;response to endogenous stimulus;2.56087170186919e-08!GO:0008135;translation factor activity, nucleic acid binding;3.0085247557763e-08!GO:0031965;nuclear membrane;3.9284339433218e-08!GO:0051169;nuclear transport;4.20108317144281e-08!GO:0006163;purine nucleotide metabolic process;4.28634000257968e-08!GO:0006399;tRNA metabolic process;4.46499052779257e-08!GO:0006281;DNA repair;4.64239674184758e-08!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.42036328989438e-08!GO:0009259;ribonucleotide metabolic process;6.75564461075703e-08!GO:0007005;mitochondrion organization and biogenesis;6.77694984402371e-08!GO:0042254;ribosome biogenesis and assembly;7.51237858329562e-08!GO:0030163;protein catabolic process;7.53676748925887e-08!GO:0005793;ER-Golgi intermediate compartment;8.13998715255672e-08!GO:0009150;purine ribonucleotide metabolic process;8.26578633386303e-08!GO:0030532;small nuclear ribonucleoprotein complex;8.6718633875024e-08!GO:0016192;vesicle-mediated transport;8.95437091415551e-08!GO:0042623;ATPase activity, coupled;1.19990714044536e-07!GO:0016070;RNA metabolic process;1.25504845750967e-07!GO:0017038;protein import;1.33673272030602e-07!GO:0006164;purine nucleotide biosynthetic process;1.50009113458266e-07!GO:0016563;transcription activator activity;2.1831443430943e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.87525032851696e-07!GO:0044453;nuclear membrane part;2.90700614274977e-07!GO:0009260;ribonucleotide biosynthetic process;3.54712672353266e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.96333166202002e-07!GO:0008639;small protein conjugating enzyme activity;4.10139249994128e-07!GO:0016568;chromatin modification;4.70767409906354e-07!GO:0006461;protein complex assembly;4.74733496757267e-07!GO:0005768;endosome;4.87338617792006e-07!GO:0016887;ATPase activity;7.12966004918836e-07!GO:0004842;ubiquitin-protein ligase activity;7.98176479678445e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.58182527002973e-07!GO:0006366;transcription from RNA polymerase II promoter;1.01751680655404e-06!GO:0006793;phosphorus metabolic process;1.03934463736612e-06!GO:0006796;phosphate metabolic process;1.03934463736612e-06!GO:0050794;regulation of cellular process;1.04040508148127e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.09937604194763e-06!GO:0065002;intracellular protein transport across a membrane;1.28584080958269e-06!GO:0043069;negative regulation of programmed cell death;1.28669831404252e-06!GO:0019787;small conjugating protein ligase activity;1.6104814896715e-06!GO:0045786;negative regulation of progression through cell cycle;1.6104814896715e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.6104814896715e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.6104814896715e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.6104814896715e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.78803527608817e-06!GO:0044431;Golgi apparatus part;1.80605293439284e-06!GO:0009141;nucleoside triphosphate metabolic process;2.00475929925406e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.10338683130164e-06!GO:0007010;cytoskeleton organization and biogenesis;2.12170024486215e-06!GO:0016604;nuclear body;2.87091608774476e-06!GO:0043066;negative regulation of apoptosis;2.89966421083e-06!GO:0051329;interphase of mitotic cell cycle;2.90536181855757e-06!GO:0006446;regulation of translational initiation;2.9102995941016e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.20578718995884e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.20578718995884e-06!GO:0009108;coenzyme biosynthetic process;3.23605396806894e-06!GO:0030036;actin cytoskeleton organization and biogenesis;4.14898275597547e-06!GO:0009117;nucleotide metabolic process;4.20769799541005e-06!GO:0051325;interphase;4.24678703491476e-06!GO:0043038;amino acid activation;4.24678703491476e-06!GO:0006418;tRNA aminoacylation for protein translation;4.24678703491476e-06!GO:0043039;tRNA aminoacylation;4.24678703491476e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.13590596261314e-06!GO:0016023;cytoplasmic membrane-bound vesicle;5.32807868166105e-06!GO:0003714;transcription corepressor activity;5.99460779076332e-06!GO:0006916;anti-apoptosis;6.20914728068409e-06!GO:0016881;acid-amino acid ligase activity;6.56291922074678e-06!GO:0008654;phospholipid biosynthetic process;7.17918084754786e-06!GO:0009142;nucleoside triphosphate biosynthetic process;7.30312957525725e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.30312957525725e-06!GO:0006413;translational initiation;7.5055852381344e-06!GO:0003743;translation initiation factor activity;8.92019175936575e-06!GO:0008565;protein transporter activity;9.18253107348863e-06!GO:0031988;membrane-bound vesicle;9.20361432927527e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.48957889537739e-06!GO:0005643;nuclear pore;9.74108592951226e-06!GO:0016310;phosphorylation;1.02396939309253e-05!GO:0009056;catabolic process;1.09518048965243e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.32791116847329e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.32791116847329e-05!GO:0031252;leading edge;1.32791116847329e-05!GO:0015986;ATP synthesis coupled proton transport;1.33961339955831e-05!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.33961339955831e-05!GO:0006364;rRNA processing;1.33990876844781e-05!GO:0003924;GTPase activity;1.45630246535638e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.50236840246537e-05!GO:0000786;nucleosome;1.86482101725799e-05!GO:0048522;positive regulation of cellular process;2.42169736586091e-05!GO:0016564;transcription repressor activity;2.43521054993341e-05!GO:0030029;actin filament-based process;2.46244799790665e-05!GO:0045259;proton-transporting ATP synthase complex;2.72460259453785e-05!GO:0019829;cation-transporting ATPase activity;2.74327378657876e-05!GO:0001558;regulation of cell growth;2.84393798505821e-05!GO:0051246;regulation of protein metabolic process;2.85313301774557e-05!GO:0030120;vesicle coat;2.89811506726131e-05!GO:0030662;coated vesicle membrane;2.89811506726131e-05!GO:0016072;rRNA metabolic process;2.90379093426269e-05!GO:0016491;oxidoreductase activity;2.90379093426269e-05!GO:0046034;ATP metabolic process;2.91892615705172e-05!GO:0005813;centrosome;3.05927801314265e-05!GO:0005762;mitochondrial large ribosomal subunit;3.28476359462674e-05!GO:0000315;organellar large ribosomal subunit;3.28476359462674e-05!GO:0042802;identical protein binding;3.31657090915011e-05!GO:0009060;aerobic respiration;3.33254757901204e-05!GO:0007264;small GTPase mediated signal transduction;3.50815740570294e-05!GO:0044440;endosomal part;3.82683055153545e-05!GO:0010008;endosome membrane;3.82683055153545e-05!GO:0005788;endoplasmic reticulum lumen;3.87432681890595e-05!GO:0008610;lipid biosynthetic process;3.95585764951036e-05!GO:0005815;microtubule organizing center;4.10506890906457e-05!GO:0005667;transcription factor complex;4.15463876195926e-05!GO:0016787;hydrolase activity;4.20785734502704e-05!GO:0032446;protein modification by small protein conjugation;4.7240909376758e-05!GO:0016779;nucleotidyltransferase activity;4.99846807148867e-05!GO:0016567;protein ubiquitination;5.63648826302151e-05!GO:0048475;coated membrane;5.63949155013094e-05!GO:0030117;membrane coat;5.63949155013094e-05!GO:0031410;cytoplasmic vesicle;5.72533747938587e-05!GO:0051170;nuclear import;5.88693432090762e-05!GO:0008361;regulation of cell size;6.98383607838809e-05!GO:0046930;pore complex;6.99873040738732e-05!GO:0031982;vesicle;7.05455617863905e-05!GO:0019899;enzyme binding;7.20498451266917e-05!GO:0005905;coated pit;7.23449558172091e-05!GO:0016049;cell growth;7.38370036793467e-05!GO:0000139;Golgi membrane;7.38370036793467e-05!GO:0004386;helicase activity;7.9962186354541e-05!GO:0031324;negative regulation of cellular metabolic process;8.07126107216001e-05!GO:0006606;protein import into nucleus;8.07126107216001e-05!GO:0051427;hormone receptor binding;8.57431823490662e-05!GO:0015078;hydrogen ion transmembrane transporter activity;9.2642854312571e-05!GO:0048468;cell development;9.70461676884876e-05!GO:0050789;regulation of biological process;0.000102870149613169!GO:0065009;regulation of a molecular function;0.000109331898856257!GO:0006754;ATP biosynthetic process;0.000110912257848992!GO:0006753;nucleoside phosphate metabolic process;0.000110912257848992!GO:0009892;negative regulation of metabolic process;0.000121657600210931!GO:0045333;cellular respiration;0.000123222153989279!GO:0005839;proteasome core complex (sensu Eukaryota);0.000125609352123092!GO:0003713;transcription coactivator activity;0.000127433873236572!GO:0035257;nuclear hormone receptor binding;0.00014803108621775!GO:0016469;proton-transporting two-sector ATPase complex;0.000154808848188258!GO:0005874;microtubule;0.000170924282825976!GO:0006888;ER to Golgi vesicle-mediated transport;0.000174099672393742!GO:0016607;nuclear speck;0.000174099672393742!GO:0006752;group transfer coenzyme metabolic process;0.0001828390878611!GO:0008092;cytoskeletal protein binding;0.00018727875755095!GO:0005773;vacuole;0.000225033391866023!GO:0019843;rRNA binding;0.000225033391866023!GO:0016853;isomerase activity;0.000227941214294865!GO:0005770;late endosome;0.000240357050970841!GO:0003899;DNA-directed RNA polymerase activity;0.000283265840355436!GO:0040008;regulation of growth;0.000286561931093368!GO:0016126;sterol biosynthetic process;0.000316556762924402!GO:0006403;RNA localization;0.000328864947127975!GO:0050657;nucleic acid transport;0.000328864947127975!GO:0051236;establishment of RNA localization;0.000328864947127975!GO:0050658;RNA transport;0.000328864947127975!GO:0008026;ATP-dependent helicase activity;0.000362437725893974!GO:0044262;cellular carbohydrate metabolic process;0.000363974827111907!GO:0046474;glycerophospholipid biosynthetic process;0.000363974827111907!GO:0006099;tricarboxylic acid cycle;0.000367735734554478!GO:0046356;acetyl-CoA catabolic process;0.000367735734554478!GO:0008637;apoptotic mitochondrial changes;0.000376088057273865!GO:0016301;kinase activity;0.00041095736753774!GO:0006084;acetyl-CoA metabolic process;0.000412191256416711!GO:0007243;protein kinase cascade;0.000416047422335353!GO:0043623;cellular protein complex assembly;0.000435017531708768!GO:0004674;protein serine/threonine kinase activity;0.000443909989999199!GO:0045454;cell redox homeostasis;0.000465354178732266!GO:0003697;single-stranded DNA binding;0.000487043683737196!GO:0030867;rough endoplasmic reticulum membrane;0.000534204426358236!GO:0030176;integral to endoplasmic reticulum membrane;0.000565334692799147!GO:0005819;spindle;0.000581089080135773!GO:0000245;spliceosome assembly;0.000590629627178496!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000592206922854569!GO:0008632;apoptotic program;0.000682035750112394!GO:0005525;GTP binding;0.000718335749654625!GO:0046467;membrane lipid biosynthetic process;0.000721517538097137!GO:0006695;cholesterol biosynthetic process;0.000740565407192447!GO:0000151;ubiquitin ligase complex;0.000756617753420107!GO:0043065;positive regulation of apoptosis;0.000759023907453923!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000782663336133024!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000864572330369509!GO:0004298;threonine endopeptidase activity;0.000867496324861643!GO:0043068;positive regulation of programmed cell death;0.000955961598961606!GO:0006082;organic acid metabolic process;0.00102690596175008!GO:0033116;ER-Golgi intermediate compartment membrane;0.00102690596175008!GO:0051187;cofactor catabolic process;0.00104187309342913!GO:0005769;early endosome;0.00107596196576712!GO:0048518;positive regulation of biological process;0.00108321846667621!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00120822110568129!GO:0007265;Ras protein signal transduction;0.0012790369446523!GO:0019752;carboxylic acid metabolic process;0.0013285242171908!GO:0030133;transport vesicle;0.00138897541021951!GO:0016481;negative regulation of transcription;0.0014084610214811!GO:0009165;nucleotide biosynthetic process;0.00150304196040572!GO:0000323;lytic vacuole;0.00157551684415697!GO:0005764;lysosome;0.00157551684415697!GO:0008629;induction of apoptosis by intracellular signals;0.00161326203146919!GO:0045941;positive regulation of transcription;0.00162830351927753!GO:0006261;DNA-dependent DNA replication;0.00166210038909615!GO:0043566;structure-specific DNA binding;0.00172312631028636!GO:0016859;cis-trans isomerase activity;0.00172525633730243!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00172542898664789!GO:0009109;coenzyme catabolic process;0.00181662149172399!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00185480727302663!GO:0008250;oligosaccharyl transferase complex;0.00192046211905726!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0019389034800599!GO:0005798;Golgi-associated vesicle;0.00194075977824751!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00194478459559822!GO:0015399;primary active transmembrane transporter activity;0.00194478459559822!GO:0033673;negative regulation of kinase activity;0.00201467469368348!GO:0006469;negative regulation of protein kinase activity;0.00201467469368348!GO:0030132;clathrin coat of coated pit;0.00220875673968985!GO:0051920;peroxiredoxin activity;0.00225907004105976!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00229327492390504!GO:0007006;mitochondrial membrane organization and biogenesis;0.00233885027785866!GO:0051348;negative regulation of transferase activity;0.00246677339403672!GO:0001726;ruffle;0.00246677339403672!GO:0030118;clathrin coat;0.00254516287502518!GO:0048471;perinuclear region of cytoplasm;0.00257687084166351!GO:0045792;negative regulation of cell size;0.00266883962378283!GO:0045893;positive regulation of transcription, DNA-dependent;0.00277916809131112!GO:0005774;vacuolar membrane;0.00294264869977851!GO:0001836;release of cytochrome c from mitochondria;0.00296773462762209!GO:0000314;organellar small ribosomal subunit;0.00298728644248991!GO:0005763;mitochondrial small ribosomal subunit;0.00298728644248991!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00303959040017297!GO:0006595;polyamine metabolic process;0.0031129931341401!GO:0030308;negative regulation of cell growth;0.00312708954098314!GO:0006839;mitochondrial transport;0.00318983436397038!GO:0032561;guanyl ribonucleotide binding;0.00333149927676277!GO:0019001;guanyl nucleotide binding;0.00333149927676277!GO:0046489;phosphoinositide biosynthetic process;0.00340142059290414!GO:0006414;translational elongation;0.00359650395532851!GO:0006091;generation of precursor metabolites and energy;0.00362841115319192!GO:0008033;tRNA processing;0.00376147967015981!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00381005432804399!GO:0043681;protein import into mitochondrion;0.00388252348280662!GO:0051028;mRNA transport;0.00410287941037752!GO:0006520;amino acid metabolic process;0.00416239492472496!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0042712251273787!GO:0031968;organelle outer membrane;0.00441268728125507!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00443675099777128!GO:0006979;response to oxidative stress;0.00445008682953073!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00457030828070246!GO:0005791;rough endoplasmic reticulum;0.00467844281868025!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00475651709098618!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00502677581202413!GO:0043488;regulation of mRNA stability;0.00502677581202413!GO:0043487;regulation of RNA stability;0.00502677581202413!GO:0005048;signal sequence binding;0.00536475770476057!GO:0017166;vinculin binding;0.00551922376925744!GO:0005885;Arp2/3 protein complex;0.0055930785422106!GO:0030119;AP-type membrane coat adaptor complex;0.00566455014303163!GO:0006402;mRNA catabolic process;0.00575301267334055!GO:0005684;U2-dependent spliceosome;0.0058003995573216!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0058003995573216!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0058003995573216!GO:0019867;outer membrane;0.00587013554821274!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00609963126676501!GO:0031902;late endosome membrane;0.00620977684385566!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00625188147421562!GO:0030131;clathrin adaptor complex;0.00635214781150778!GO:0005996;monosaccharide metabolic process;0.00668140298374236!GO:0030658;transport vesicle membrane;0.00669508931662577!GO:0040029;regulation of gene expression, epigenetic;0.00669641401835941!GO:0051789;response to protein stimulus;0.0067905782428379!GO:0006986;response to unfolded protein;0.0067905782428379!GO:0030027;lamellipodium;0.00687856441352329!GO:0006778;porphyrin metabolic process;0.00695434090606006!GO:0033013;tetrapyrrole metabolic process;0.00695434090606006!GO:0006650;glycerophospholipid metabolic process;0.00699545651628229!GO:0051101;regulation of DNA binding;0.00701332715767801!GO:0005741;mitochondrial outer membrane;0.00718567185769543!GO:0003682;chromatin binding;0.00736421953011406!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00759318848594092!GO:0044437;vacuolar part;0.00762868411836223!GO:0030880;RNA polymerase complex;0.00776519895788472!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00779275007834015!GO:0035258;steroid hormone receptor binding;0.00785981558880777!GO:0018196;peptidyl-asparagine modification;0.00792091740390264!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00792091740390264!GO:0006740;NADPH regeneration;0.00804827272650081!GO:0006098;pentose-phosphate shunt;0.00804827272650081!GO:0043492;ATPase activity, coupled to movement of substances;0.00811280503407866!GO:0008094;DNA-dependent ATPase activity;0.00816870974816723!GO:0043284;biopolymer biosynthetic process;0.00816870974816723!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0081782417736092!GO:0007088;regulation of mitosis;0.00825498068152964!GO:0019318;hexose metabolic process;0.00836112570928128!GO:0016044;membrane organization and biogenesis;0.00836112570928128!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00843634645475241!GO:0005765;lysosomal membrane;0.00870556655563732!GO:0015980;energy derivation by oxidation of organic compounds;0.00881839444476066!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00895175929249236!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00895175929249236!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00895175929249236!GO:0008047;enzyme activator activity;0.00910435756480751!GO:0006066;alcohol metabolic process;0.00943157721844444!GO:0006626;protein targeting to mitochondrion;0.00947305927869806!GO:0007242;intracellular signaling cascade;0.00957465951833432!GO:0007266;Rho protein signal transduction;0.00984504154993979!GO:0006613;cotranslational protein targeting to membrane;0.00995962182415839!GO:0007346;regulation of progression through mitotic cell cycle;0.00995962182415839!GO:0030031;cell projection biogenesis;0.0103003656789578!GO:0030125;clathrin vesicle coat;0.0110080927290846!GO:0030665;clathrin coated vesicle membrane;0.0110080927290846!GO:0043021;ribonucleoprotein binding;0.011390287514892!GO:0006779;porphyrin biosynthetic process;0.011390287514892!GO:0033014;tetrapyrrole biosynthetic process;0.011390287514892!GO:0050790;regulation of catalytic activity;0.0114729298045178!GO:0009967;positive regulation of signal transduction;0.0115536169505414!GO:0030659;cytoplasmic vesicle membrane;0.0116458474907487!GO:0006509;membrane protein ectodomain proteolysis;0.011676127924369!GO:0033619;membrane protein proteolysis;0.011676127924369!GO:0006749;glutathione metabolic process;0.0120846627638308!GO:0051098;regulation of binding;0.0120846627638308!GO:0051168;nuclear export;0.0121888113862152!GO:0006401;RNA catabolic process;0.0121888113862152!GO:0006917;induction of apoptosis;0.0127701609455549!GO:0000118;histone deacetylase complex;0.0129334920928482!GO:0007051;spindle organization and biogenesis;0.0132104807090327!GO:0001666;response to hypoxia;0.0133062885602737!GO:0000082;G1/S transition of mitotic cell cycle;0.0133699055997548!GO:0003678;DNA helicase activity;0.0136300682001756!GO:0051252;regulation of RNA metabolic process;0.0137462425024043!GO:0015992;proton transport;0.0148635895651516!GO:0005083;small GTPase regulator activity;0.0148980956706182!GO:0006268;DNA unwinding during replication;0.0149246562466048!GO:0004680;casein kinase activity;0.0149345693741879!GO:0031301;integral to organelle membrane;0.0158151751652316!GO:0032508;DNA duplex unwinding;0.0159530545798812!GO:0032392;DNA geometric change;0.0159530545798812!GO:0004576;oligosaccharyl transferase activity;0.016261771111699!GO:0016741;transferase activity, transferring one-carbon groups;0.0164844375832821!GO:0045926;negative regulation of growth;0.0165181026706312!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0165252551143376!GO:0000428;DNA-directed RNA polymerase complex;0.0165252551143376!GO:0048487;beta-tubulin binding;0.0165583625654893!GO:0030660;Golgi-associated vesicle membrane;0.0166447618987725!GO:0012502;induction of programmed cell death;0.0166610078374652!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0167393026668582!GO:0006818;hydrogen transport;0.0170032841499004!GO:0042168;heme metabolic process;0.0170754073177454!GO:0006643;membrane lipid metabolic process;0.0173334102593854!GO:0045892;negative regulation of transcription, DNA-dependent;0.0173504030355151!GO:0000902;cell morphogenesis;0.0173767293674077!GO:0032989;cellular structure morphogenesis;0.0173767293674077!GO:0003746;translation elongation factor activity;0.0180669650517087!GO:0000075;cell cycle checkpoint;0.0182764755565582!GO:0003684;damaged DNA binding;0.0183645503992573!GO:0006497;protein amino acid lipidation;0.0188231563704339!GO:0008283;cell proliferation;0.0189885160987735!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0191807835035514!GO:0043086;negative regulation of catalytic activity;0.0201644870331242!GO:0008168;methyltransferase activity;0.0209462849911857!GO:0046483;heterocycle metabolic process;0.0210446635096733!GO:0005856;cytoskeleton;0.021130459461399!GO:0016125;sterol metabolic process;0.0215337188861167!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0216299885748232!GO:0003779;actin binding;0.0217056082034153!GO:0006007;glucose catabolic process;0.0218151135079706!GO:0000049;tRNA binding;0.0221135466055472!GO:0005657;replication fork;0.0221135466055472!GO:0015631;tubulin binding;0.022216373399523!GO:0043154;negative regulation of caspase activity;0.0236665849814751!GO:0007017;microtubule-based process;0.0239317491483207!GO:0044433;cytoplasmic vesicle part;0.0239317491483207!GO:0003729;mRNA binding;0.0239734514584672!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0240085330601659!GO:0008286;insulin receptor signaling pathway;0.0246635925172779!GO:0006220;pyrimidine nucleotide metabolic process;0.0247129982569657!GO:0007040;lysosome organization and biogenesis;0.0251471786478298!GO:0003724;RNA helicase activity;0.0251471786478298!GO:0006611;protein export from nucleus;0.0252867343644974!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0253890320100743!GO:0006807;nitrogen compound metabolic process;0.0253890320100743!GO:0065007;biological regulation;0.0262003486270758!GO:0006506;GPI anchor biosynthetic process;0.0273286922748562!GO:0000096;sulfur amino acid metabolic process;0.0274231966346779!GO:0006783;heme biosynthetic process;0.0275275339533342!GO:0046822;regulation of nucleocytoplasmic transport;0.0286055437043614!GO:0007050;cell cycle arrest;0.0289112963255227!GO:0051287;NAD binding;0.0289630114836028!GO:0005637;nuclear inner membrane;0.0289630114836028!GO:0006644;phospholipid metabolic process;0.029217101641001!GO:0009966;regulation of signal transduction;0.0293809780574284!GO:0043414;biopolymer methylation;0.0293870719827763!GO:0042158;lipoprotein biosynthetic process;0.0295244473471428!GO:0006739;NADP metabolic process;0.0305049076553885!GO:0030145;manganese ion binding;0.0305049076553885!GO:0006519;amino acid and derivative metabolic process;0.0309922971582589!GO:0016791;phosphoric monoester hydrolase activity;0.0310721895367065!GO:0016311;dephosphorylation;0.031475856633486!GO:0008652;amino acid biosynthetic process;0.0315811807351254!GO:0051128;regulation of cellular component organization and biogenesis;0.0315811807351254!GO:0008538;proteasome activator activity;0.0318535755902293!GO:0006284;base-excision repair;0.0318535755902293!GO:0050662;coenzyme binding;0.0319107085694972!GO:0016363;nuclear matrix;0.031921236794636!GO:0033559;unsaturated fatty acid metabolic process;0.0320860894471959!GO:0006636;unsaturated fatty acid biosynthetic process;0.0320860894471959!GO:0031124;mRNA 3'-end processing;0.0321513562482308!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0323609053561789!GO:0005938;cell cortex;0.0323729671227792!GO:0045334;clathrin-coated endocytic vesicle;0.0323753050390773!GO:0006289;nucleotide-excision repair;0.0323903750842011!GO:0000084;S phase of mitotic cell cycle;0.0323903750842011!GO:0006733;oxidoreduction coenzyme metabolic process;0.0323903750842011!GO:0005862;muscle thin filament tropomyosin;0.0324744156350444!GO:0008139;nuclear localization sequence binding;0.0333793504505722!GO:0042393;histone binding;0.0334566868549248!GO:0030134;ER to Golgi transport vesicle;0.0334998130134407!GO:0051087;chaperone binding;0.0335876012384448!GO:0051338;regulation of transferase activity;0.0336887018191605!GO:0016569;covalent chromatin modification;0.0337824699369501!GO:0006950;response to stress;0.033832847859743!GO:0050178;phenylpyruvate tautomerase activity;0.0338861531614295!GO:0006505;GPI anchor metabolic process;0.0340530028514782!GO:0051059;NF-kappaB binding;0.0346253124809914!GO:0044452;nucleolar part;0.0347161480769994!GO:0016272;prefoldin complex;0.0352339737639064!GO:0045806;negative regulation of endocytosis;0.0352339737639064!GO:0006769;nicotinamide metabolic process;0.0352339737639064!GO:0046870;cadmium ion binding;0.0352339737639064!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0358763833432381!GO:0009262;deoxyribonucleotide metabolic process;0.0358879416433732!GO:0006612;protein targeting to membrane;0.0365866366166018!GO:0019206;nucleoside kinase activity;0.0367978793947052!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0368496269743542!GO:0006352;transcription initiation;0.0374999027995346!GO:0030521;androgen receptor signaling pathway;0.037827605087087!GO:0008186;RNA-dependent ATPase activity;0.0378743600672453!GO:0004177;aminopeptidase activity;0.0379487017184687!GO:0031072;heat shock protein binding;0.038364130323187!GO:0044255;cellular lipid metabolic process;0.039420674685627!GO:0006338;chromatin remodeling;0.039420674685627!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0399972976171018!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0399972976171018!GO:0009126;purine nucleoside monophosphate metabolic process;0.0399972976171018!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0399972976171018!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0399972976171018!GO:0015002;heme-copper terminal oxidase activity;0.0399972976171018!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0399972976171018!GO:0004129;cytochrome-c oxidase activity;0.0399972976171018!GO:0009308;amine metabolic process;0.0400430998708795!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0408988728108992!GO:0008022;protein C-terminus binding;0.0410613574700326!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0413884991545971!GO:0010257;NADH dehydrogenase complex assembly;0.0413884991545971!GO:0033108;mitochondrial respiratory chain complex assembly;0.0413884991545971!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0415196444122261!GO:0043433;negative regulation of transcription factor activity;0.0415196444122261!GO:0030433;ER-associated protein catabolic process;0.0424774784426416!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0424774784426416!GO:0000059;protein import into nucleus, docking;0.0425345517532124!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0427487153980876!GO:0046519;sphingoid metabolic process;0.0429231080651555!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.044516892500832!GO:0009124;nucleoside monophosphate biosynthetic process;0.044652482290853!GO:0009123;nucleoside monophosphate metabolic process;0.044652482290853!GO:0031529;ruffle organization and biogenesis;0.0448294005729746!GO:0003923;GPI-anchor transamidase activity;0.0449521126246317!GO:0016255;attachment of GPI anchor to protein;0.0449521126246317!GO:0042765;GPI-anchor transamidase complex;0.0449521126246317!GO:0051270;regulation of cell motility;0.0449521126246317!GO:0006383;transcription from RNA polymerase III promoter;0.0452385026419934!GO:0016584;nucleosome positioning;0.0453666039588958!GO:0016783;sulfurtransferase activity;0.0455675252162469!GO:0005881;cytoplasmic microtubule;0.0457737120975781!GO:0007033;vacuole organization and biogenesis;0.0465132295331695!GO:0051090;regulation of transcription factor activity;0.0476470038355167!GO:0007021;tubulin folding;0.0483543203704166!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0485417883155224 | |||
|sample_id=11517 | |sample_id=11517 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 104: | ||
|sample_tissue=kidney | |sample_tissue=kidney | ||
|top_motifs=XCPE1{core}:3.20883137547;SP1:2.43651972267;POU2F1..3:2.06248300908;ZNF423:2.05292760357;GTF2A1,2:2.04828986018;TFAP2{A,C}:1.90547187919;PBX1:1.77330953045;TFCP2:1.75016051508;ZNF148:1.72843596027;EBF1:1.56496409751;RXRA_VDR{dimer}:1.53132326793;RXR{A,B,G}:1.5171972088;MYOD1:1.4530040849;HNF1A:1.39352027562;SPZ1:1.35955067121;TFAP2B:1.29740389569;SOX{8,9,10}:1.24631268928;bHLH_family:1.22962010167;NR6A1:1.16889495622;VSX1,2:1.1664968792;NKX2-3_NKX2-5:1.14463235183;ESRRA:1.13344508914;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.1261413532;HIC1:1.07371680454;ESR1:1.05490364;SNAI1..3:1.05412243598;ZEB1:1.0409641478;NFY{A,B,C}:1.02872953655;HOX{A5,B5}:1.0156865162;MTF1:0.928794150665;GLI1..3:0.905876176749;NR5A1,2:0.903716153436;RREB1:0.900335270983;PAX5:0.880722556662;TEAD1:0.820439548611;TP53:0.811222649437;IKZF1:0.790727237522;LEF1_TCF7_TCF7L1,2:0.780980529751;ZIC1..3:0.727371279308;NR3C1:0.718911354125;HAND1,2:0.696922806555;LMO2:0.670609206679;JUN:0.629212854922;LHX3,4:0.625342665245;TBX4,5:0.613357703131;GFI1:0.600246586085;ADNP_IRX_SIX_ZHX:0.523020225389;NR1H4:0.51381264143;SRF:0.508614463109;ZNF143:0.502892739331;ONECUT1,2:0.498610680419;PATZ1:0.480739790215;E2F1..5:0.469010528316;GZF1:0.465946346906;FOXQ1:0.461497837774;GTF2I:0.455413409483;PAX8:0.451249629442;TFDP1:0.421590745121;STAT5{A,B}:0.359000348913;PPARG:0.351575169296;TBP:0.350770113841;EP300:0.330880697361;FOSL2:0.324763602856;TLX1..3_NFIC{dimer}:0.306241502096;GFI1B:0.282472377544;BACH2:0.243575671149;FOS_FOS{B,L1}_JUN{B,D}:0.230480745502;SOX2:0.216249593286;HNF4A_NR2F1,2:0.205499966539;ZBTB6:0.203014100167;REST:0.191220927241;NFE2L1:0.162247719497;MAZ:0.128212665339;GCM1,2:0.115982222302;SOX17:0.0896624749803;POU5F1:0.0854724318582;NFE2:0.0836643163183;PRRX1,2:0.0785100693887;NFE2L2:0.0496296099173;HOXA9_MEIS1:0.048549030905;STAT2,4,6:0.0469873036422;MED-1{core}:0.0268785622024;ZFP161:-0.0140547147139;MEF2{A,B,C,D}:-0.018550554238;NFKB1_REL_RELA:-0.0228785386479;EGR1..3:-0.0335170152728;PAX1,9:-0.0392124727958;TAL1_TCF{3,4,12}:-0.0415642993113;POU3F1..4:-0.065433667411;ATF2:-0.0801049409318;TFAP4:-0.0930540970596;NANOG:-0.12325745877;POU1F1:-0.157161988153;HOX{A6,A7,B6,B7}:-0.182357068768;NRF1:-0.219760094802;AR:-0.223162566283;HLF:-0.229360020058;GATA6:-0.234890998284;OCT4_SOX2{dimer}:-0.256689680584;FOXM1:-0.263727488457;ETS1,2:-0.268709968523;BREu{core}:-0.271411333482;RFX1:-0.271806650951;RUNX1..3:-0.285909561673;CRX:-0.286737473432;NHLH1,2:-0.29085543755;ZNF238:-0.310000490069;KLF4:-0.315998669999;CDC5L:-0.331623067941;HES1:-0.334258583136;FOX{F1,F2,J1}:-0.346106860985;MZF1:-0.358903839379;TOPORS:-0.366860747572;DBP:-0.383025892755;MTE{core}:-0.386893255893;POU6F1:-0.388066425596;ARID5B:-0.413230201047;ELK1,4_GABP{A,B1}:-0.459482022169;CREB1:-0.513439964898;TEF:-0.523458404446;RORA:-0.523825632029;PAX6:-0.535172823785;MYB:-0.548349794259;CEBPA,B_DDIT3:-0.554059435529;SPIB:-0.565413489678;MYBL2:-0.572278483889;PDX1:-0.596318950681;NFIL3:-0.609033921975;SREBF1,2:-0.61538424634;XBP1:-0.625649906023;CUX2:-0.630348863849;UFEwm:-0.634065922899;PITX1..3:-0.638399172287;PAX2:-0.66529673715;STAT1,3:-0.73375636593;SOX5:-0.734857791722;FOX{I1,J2}:-0.738520158046;ATF6:-0.753725220808;ZNF384:-0.765256524488;SPI1:-0.766621437375;YY1:-0.770542076046;NFATC1..3:-0.778426773492;FOXL1:-0.805255886965;ATF4:-0.806939446113;HMX1:-0.818962516528;ALX4:-0.851867643488;FOXA2:-0.893002557575;EN1,2:-0.908909462646;NKX3-1:-0.921163651141;HSF1,2:-0.950595554493;PAX3,7:-0.958826798914;SMAD1..7,9:-0.976303172115;PRDM1:-0.98406093388;FOX{D1,D2}:-0.992771321353;NKX6-1,2:-1.02617975133;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.03223260916;MYFfamily:-1.04775986562;IRF7:-1.06339733891;NANOG{mouse}:-1.0739025746;ATF5_CREB3:-1.0903290566;ELF1,2,4:-1.10202776737;IRF1,2:-1.11300055197;HOX{A4,D4}:-1.12948161162;AHR_ARNT_ARNT2:-1.15505517099;CDX1,2,4:-1.15679685222;ALX1:-1.17496154697;NKX3-2:-1.22790265766;RFX2..5_RFXANK_RFXAP:-1.23118911315;T:-1.25028539091;HIF1A:-1.2645586993;DMAP1_NCOR{1,2}_SMARC:-1.29205349544;HBP1_HMGB_SSRP1_UBTF:-1.29856933218;FOXP3:-1.33832904495;NKX2-2,8:-1.3412732606;TGIF1:-1.41235865273;EVI1:-1.41579175985;AIRE:-1.44349805682;FOXP1:-1.46043745815;MAFB:-1.54702085441;RBPJ:-1.5757071438;NKX2-1,4:-1.60693858;NFIX:-1.62926319573;FOXN1:-1.6841607016;FOXD3:-1.70519504317;IKZF2:-1.73801763207;GATA4:-1.80561123954;TLX2:-1.81650169837;ZBTB16:-1.82760055463;BPTF:-1.88516579191;FOXO1,3,4:-1.92760028445;HMGA1,2:-2.00355545193;PAX4:-2.42299850182 | |top_motifs=XCPE1{core}:3.20883137547;SP1:2.43651972267;POU2F1..3:2.06248300908;ZNF423:2.05292760357;GTF2A1,2:2.04828986018;TFAP2{A,C}:1.90547187919;PBX1:1.77330953045;TFCP2:1.75016051508;ZNF148:1.72843596027;EBF1:1.56496409751;RXRA_VDR{dimer}:1.53132326793;RXR{A,B,G}:1.5171972088;MYOD1:1.4530040849;HNF1A:1.39352027562;SPZ1:1.35955067121;TFAP2B:1.29740389569;SOX{8,9,10}:1.24631268928;bHLH_family:1.22962010167;NR6A1:1.16889495622;VSX1,2:1.1664968792;NKX2-3_NKX2-5:1.14463235183;ESRRA:1.13344508914;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.1261413532;HIC1:1.07371680454;ESR1:1.05490364;SNAI1..3:1.05412243598;ZEB1:1.0409641478;NFY{A,B,C}:1.02872953655;HOX{A5,B5}:1.0156865162;MTF1:0.928794150665;GLI1..3:0.905876176749;NR5A1,2:0.903716153436;RREB1:0.900335270983;PAX5:0.880722556662;TEAD1:0.820439548611;TP53:0.811222649437;IKZF1:0.790727237522;LEF1_TCF7_TCF7L1,2:0.780980529751;ZIC1..3:0.727371279308;NR3C1:0.718911354125;HAND1,2:0.696922806555;LMO2:0.670609206679;JUN:0.629212854922;LHX3,4:0.625342665245;TBX4,5:0.613357703131;GFI1:0.600246586085;ADNP_IRX_SIX_ZHX:0.523020225389;NR1H4:0.51381264143;SRF:0.508614463109;ZNF143:0.502892739331;ONECUT1,2:0.498610680419;PATZ1:0.480739790215;E2F1..5:0.469010528316;GZF1:0.465946346906;FOXQ1:0.461497837774;GTF2I:0.455413409483;PAX8:0.451249629442;TFDP1:0.421590745121;STAT5{A,B}:0.359000348913;PPARG:0.351575169296;TBP:0.350770113841;EP300:0.330880697361;FOSL2:0.324763602856;TLX1..3_NFIC{dimer}:0.306241502096;GFI1B:0.282472377544;BACH2:0.243575671149;FOS_FOS{B,L1}_JUN{B,D}:0.230480745502;SOX2:0.216249593286;HNF4A_NR2F1,2:0.205499966539;ZBTB6:0.203014100167;REST:0.191220927241;NFE2L1:0.162247719497;MAZ:0.128212665339;GCM1,2:0.115982222302;SOX17:0.0896624749803;POU5F1:0.0854724318582;NFE2:0.0836643163183;PRRX1,2:0.0785100693887;NFE2L2:0.0496296099173;HOXA9_MEIS1:0.048549030905;STAT2,4,6:0.0469873036422;MED-1{core}:0.0268785622024;ZFP161:-0.0140547147139;MEF2{A,B,C,D}:-0.018550554238;NFKB1_REL_RELA:-0.0228785386479;EGR1..3:-0.0335170152728;PAX1,9:-0.0392124727958;TAL1_TCF{3,4,12}:-0.0415642993113;POU3F1..4:-0.065433667411;ATF2:-0.0801049409318;TFAP4:-0.0930540970596;NANOG:-0.12325745877;POU1F1:-0.157161988153;HOX{A6,A7,B6,B7}:-0.182357068768;NRF1:-0.219760094802;AR:-0.223162566283;HLF:-0.229360020058;GATA6:-0.234890998284;OCT4_SOX2{dimer}:-0.256689680584;FOXM1:-0.263727488457;ETS1,2:-0.268709968523;BREu{core}:-0.271411333482;RFX1:-0.271806650951;RUNX1..3:-0.285909561673;CRX:-0.286737473432;NHLH1,2:-0.29085543755;ZNF238:-0.310000490069;KLF4:-0.315998669999;CDC5L:-0.331623067941;HES1:-0.334258583136;FOX{F1,F2,J1}:-0.346106860985;MZF1:-0.358903839379;TOPORS:-0.366860747572;DBP:-0.383025892755;MTE{core}:-0.386893255893;POU6F1:-0.388066425596;ARID5B:-0.413230201047;ELK1,4_GABP{A,B1}:-0.459482022169;CREB1:-0.513439964898;TEF:-0.523458404446;RORA:-0.523825632029;PAX6:-0.535172823785;MYB:-0.548349794259;CEBPA,B_DDIT3:-0.554059435529;SPIB:-0.565413489678;MYBL2:-0.572278483889;PDX1:-0.596318950681;NFIL3:-0.609033921975;SREBF1,2:-0.61538424634;XBP1:-0.625649906023;CUX2:-0.630348863849;UFEwm:-0.634065922899;PITX1..3:-0.638399172287;PAX2:-0.66529673715;STAT1,3:-0.73375636593;SOX5:-0.734857791722;FOX{I1,J2}:-0.738520158046;ATF6:-0.753725220808;ZNF384:-0.765256524488;SPI1:-0.766621437375;YY1:-0.770542076046;NFATC1..3:-0.778426773492;FOXL1:-0.805255886965;ATF4:-0.806939446113;HMX1:-0.818962516528;ALX4:-0.851867643488;FOXA2:-0.893002557575;EN1,2:-0.908909462646;NKX3-1:-0.921163651141;HSF1,2:-0.950595554493;PAX3,7:-0.958826798914;SMAD1..7,9:-0.976303172115;PRDM1:-0.98406093388;FOX{D1,D2}:-0.992771321353;NKX6-1,2:-1.02617975133;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.03223260916;MYFfamily:-1.04775986562;IRF7:-1.06339733891;NANOG{mouse}:-1.0739025746;ATF5_CREB3:-1.0903290566;ELF1,2,4:-1.10202776737;IRF1,2:-1.11300055197;HOX{A4,D4}:-1.12948161162;AHR_ARNT_ARNT2:-1.15505517099;CDX1,2,4:-1.15679685222;ALX1:-1.17496154697;NKX3-2:-1.22790265766;RFX2..5_RFXANK_RFXAP:-1.23118911315;T:-1.25028539091;HIF1A:-1.2645586993;DMAP1_NCOR{1,2}_SMARC:-1.29205349544;HBP1_HMGB_SSRP1_UBTF:-1.29856933218;FOXP3:-1.33832904495;NKX2-2,8:-1.3412732606;TGIF1:-1.41235865273;EVI1:-1.41579175985;AIRE:-1.44349805682;FOXP1:-1.46043745815;MAFB:-1.54702085441;RBPJ:-1.5757071438;NKX2-1,4:-1.60693858;NFIX:-1.62926319573;FOXN1:-1.6841607016;FOXD3:-1.70519504317;IKZF2:-1.73801763207;GATA4:-1.80561123954;TLX2:-1.81650169837;ZBTB16:-1.82760055463;BPTF:-1.88516579191;FOXO1,3,4:-1.92760028445;HMGA1,2:-2.00355545193;PAX4:-2.42299850182 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11517-119H5;search_select_hide=table117:FF:11517-119H5 | |||
}} | }} | ||
Latest revision as of 18:05, 4 June 2020
| Name: | Renal Epithelial Cells, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11332 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11332
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11332
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0543 |
| 10 | 10 | 0.0073 |
| 100 | 100 | 0.473 |
| 101 | 101 | 0.0411 |
| 102 | 102 | 0.478 |
| 103 | 103 | 0.177 |
| 104 | 104 | 0.489 |
| 105 | 105 | 0.182 |
| 106 | 106 | 0.864 |
| 107 | 107 | 0.334 |
| 108 | 108 | 0.731 |
| 109 | 109 | 0.727 |
| 11 | 11 | 0.731 |
| 110 | 110 | 0.833 |
| 111 | 111 | 0.21 |
| 112 | 112 | 0.212 |
| 113 | 113 | 0.0737 |
| 114 | 114 | 0.0105 |
| 115 | 115 | 0.918 |
| 116 | 116 | 0.697 |
| 117 | 117 | 0.24 |
| 118 | 118 | 0.859 |
| 119 | 119 | 0.622 |
| 12 | 12 | 0.478 |
| 120 | 120 | 0.744 |
| 121 | 121 | 0.467 |
| 122 | 122 | 0.212 |
| 123 | 123 | 0.00227 |
| 124 | 124 | 0.211 |
| 125 | 125 | 0.195 |
| 126 | 126 | 0.929 |
| 127 | 127 | 0.238 |
| 128 | 128 | 0.589 |
| 129 | 129 | 0.263 |
| 13 | 13 | 0.897 |
| 130 | 130 | 0.0398 |
| 131 | 131 | 0.187 |
| 132 | 132 | 0.147 |
| 133 | 133 | 0.142 |
| 134 | 134 | 0.78 |
| 135 | 135 | 0.321 |
| 136 | 136 | 0.153 |
| 137 | 137 | 0.0643 |
| 138 | 138 | 0.0362 |
| 139 | 139 | 0.0122 |
| 14 | 14 | 0.566 |
| 140 | 140 | 0.227 |
| 141 | 141 | 0.076 |
| 142 | 142 | 0.708 |
| 143 | 143 | 0.404 |
| 144 | 144 | 0.705 |
| 145 | 145 | 0.768 |
| 146 | 146 | 0.0987 |
| 147 | 147 | 0.748 |
| 148 | 148 | 0.0128 |
| 149 | 149 | 0.686 |
| 15 | 15 | 0.189 |
| 150 | 150 | 0.474 |
| 151 | 151 | 0.749 |
| 152 | 152 | 0.107 |
| 153 | 153 | 0.0456 |
| 154 | 154 | 0.109 |
| 155 | 155 | 0.897 |
| 156 | 156 | 0.504 |
| 157 | 157 | 0.548 |
| 158 | 158 | 0.255 |
| 159 | 159 | 0.611 |
| 16 | 16 | 0.465 |
| 160 | 160 | 0.383 |
| 161 | 161 | 0.572 |
| 162 | 162 | 0.461 |
| 163 | 163 | 0.597 |
| 164 | 164 | 0.129 |
| 165 | 165 | 0.122 |
| 166 | 166 | 0.76 |
| 167 | 167 | 0.0482 |
| 168 | 168 | 0.33 |
| 169 | 169 | 0.445 |
| 17 | 17 | 0.918 |
| 18 | 18 | 0.326 |
| 19 | 19 | 0.731 |
| 2 | 2 | 0.51 |
| 20 | 20 | 0.977 |
| 21 | 21 | 0.337 |
| 22 | 22 | 0.378 |
| 23 | 23 | 0.593 |
| 24 | 24 | 0.917 |
| 25 | 25 | 0.343 |
| 26 | 26 | 0.541 |
| 27 | 27 | 0.69 |
| 28 | 28 | 0.243 |
| 29 | 29 | 0.312 |
| 3 | 3 | 0.0657 |
| 30 | 30 | 0.0528 |
| 31 | 31 | 0.61 |
| 32 | 32 | 0.341 |
| 33 | 33 | 0.279 |
| 34 | 34 | 0.408 |
| 35 | 35 | 0.0275 |
| 36 | 36 | 0.674 |
| 37 | 37 | 0.824 |
| 38 | 38 | 0.918 |
| 39 | 39 | 0.694 |
| 4 | 4 | 0.525 |
| 40 | 40 | 0.0357 |
| 41 | 41 | 0.409 |
| 42 | 42 | 0.234 |
| 43 | 43 | 0.184 |
| 44 | 44 | 0.507 |
| 45 | 45 | 0.309 |
| 46 | 46 | 0.396 |
| 47 | 47 | 0.551 |
| 48 | 48 | 0.986 |
| 49 | 49 | 0.111 |
| 5 | 5 | 0.143 |
| 50 | 50 | 0.317 |
| 51 | 51 | 0.871 |
| 52 | 52 | 0.714 |
| 53 | 53 | 0.149 |
| 54 | 54 | 0.957 |
| 55 | 55 | 0.0574 |
| 56 | 56 | 0.652 |
| 57 | 57 | 0.308 |
| 58 | 58 | 0.0767 |
| 59 | 59 | 0.237 |
| 6 | 6 | 0.228 |
| 60 | 60 | 0.631 |
| 61 | 61 | 0.766 |
| 62 | 62 | 0.0116 |
| 63 | 63 | 0.869 |
| 64 | 64 | 0.968 |
| 65 | 65 | 0.384 |
| 66 | 66 | 0.141 |
| 67 | 67 | 0.541 |
| 68 | 68 | 0.312 |
| 69 | 69 | 0.166 |
| 7 | 7 | 0.471 |
| 70 | 70 | 0.0798 |
| 71 | 71 | 0.0872 |
| 72 | 72 | 0.328 |
| 73 | 73 | 0.108 |
| 74 | 74 | 0.186 |
| 75 | 75 | 0.142 |
| 76 | 76 | 0.0637 |
| 77 | 77 | 0.406 |
| 78 | 78 | 0.489 |
| 79 | 79 | 0.207 |
| 8 | 8 | 0.844 |
| 80 | 80 | 0.495 |
| 81 | 81 | 0.025 |
| 82 | 82 | 0.0635 |
| 83 | 83 | 0.787 |
| 84 | 84 | 0.426 |
| 85 | 85 | 0.142 |
| 86 | 86 | 0.411 |
| 87 | 87 | 0.0986 |
| 88 | 88 | 0.81 |
| 89 | 89 | 0.847 |
| 9 | 9 | 0.734 |
| 90 | 90 | 0.00106 |
| 91 | 91 | 0.54 |
| 92 | 92 | 0.0408 |
| 93 | 93 | 0.633 |
| 94 | 94 | 0.0793 |
| 95 | 95 | 0.961 |
| 96 | 96 | 0.198 |
| 97 | 97 | 0.927 |
| 98 | 98 | 0.387 |
| 99 | 99 | 0.0221 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11332
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
1000494 (nephron tubule epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0007684 (uriniferous tubule)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
