FF:11521-119H9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004997 | |||
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004997 | |||
|accession_numbers=CAGE;DRX008301;DRR009173;DRZ000598;DRZ001983;DRZ011948;DRZ013333 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037229;DRR041595;DRZ007237 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0001007,UBERON:0000055,UBERON:0001281,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0002368,UBERON:0000353,UBERON:0003497,UBERON:0003909,UBERON:0005177,UBERON:0002365,UBERON:0007500,UBERON:0001981,UBERON:0005172,UBERON:0006925,UBERON:0002049,UBERON:0002530,UBERON:0003835,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0005173,UBERON:0004535,UBERON:0002417,UBERON:0000949,UBERON:0001280,UBERON:0004647,UBERON:0002330,UBERON:0004537,UBERON:0000916,UBERON:0002423,UBERON:0001009 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0001007,UBERON:0000055,UBERON:0001281,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0002368,UBERON:0000353,UBERON:0003497,UBERON:0003909,UBERON:0005177,UBERON:0002365,UBERON:0007500,UBERON:0001981,UBERON:0005172,UBERON:0006925,UBERON:0002049,UBERON:0002530,UBERON:0003835,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0005173,UBERON:0004535,UBERON:0002417,UBERON:0000949,UBERON:0001280,UBERON:0004647,UBERON:0002330,UBERON:0004537,UBERON:0000916,UBERON:0002423,UBERON:0001009 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000181,CL:0000417,CL:0000668,CL:0000215,CL:0000412,CL:0000255,CL:0000115,CL:0000182,CL:0002262,CL:1000398 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000181,CL:0000417,CL:0000668,CL:0000215,CL:0000412,CL:0000255,CL:0000115,CL:0000182,CL:0002262,CL:1000398 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.83!888.00!SOX18;;chr8:10588010..10588030,-!p1@SOX7!2.07!116.63!SOX7;;chr21:39870339..39870443,-!p1@ERG!1.90!78.98!ERG;;chr8:55370487..55370503,+!p1@SOX17!1.86!70.86!SOX17;;chr10:94449703..94449718,+!p1@HHEX!1.67!170.51!HHEX;;chr17:6926362..6926377,+!p1@BCL6B!1.65!43.55!BCL6B;;chr12:96588368..96588394,+!p3@ELK3!1.63!109.25!ELK3;;chr5:71803177..71803255,-!p1@ZNF366!1.52!32.48!ZNF366;;chr7:149470641..149470694,-!p1@ZNF467!1.37!98.17!ZNF467;;chr9:124991204..124991246,-!p1@LHX6!1.29!18.45!LHX6;;chr8:11561684..11561751,+!p1@GATA4!1.25!16.98!GATA4;;chr19:13213511..13213545,-!p2@LYL1!1.24!17.72!LYL1;;chr2:46524537..46524553,+!p1@EPAS1!1.23!1530.93!EPAS1;;chr20:42543441..42543497,+!p1@TOX2!1.19!64.96!TOX2;;chr17:46675420..46675465,-!p3@HOXB6!1.18!16.24!HOXB6;;chr18:53068911..53068935,-!p4@TCF4!1.17!15.50!TCF4;;chr17:46655672..46655697,-!p3@HOXB4!1.15!13.29!HOXB4;;chr17:46671108..46671147,-!p1@HOXB5!1.11!11.81!HOXB5;;chr15:96873984..96873999,+!p3@NR2F2!1.09!84.15!NR2F2;;chr20:42543506..42543549,+!p2@TOX2!1.09!27.31!TOX2;;chr18:22932080..22932170,-!p1@ZNF521!1.08!47.24!ZNF521;;chr19:13213399..13213414,-!p6@LYL1!1.08!11.07!LYL1;;chr19:46801639..46801699,+!p1@HIF3A!1.08!11.07!HIF3A;;chr10:94449675..94449694,+!p2@HHEX!1.05!28.05!HHEX;;chr15:37390850..37390909,-!p3@MEIS2!1.04!19.93!MEIS2;;chr16:79633894..79633954,-!p3@MAF!1.04!19.19!MAF;;chr1:6479968..6479986,-!p1@HES2!1.03!9.60!HES2;;chr19:46800289..46800327,+!p2@HIF3A!0.99!8.86!HIF3A;;chr1:200008734..200008765,+!p2@NR5A2!0.99!8.86!NR5A2;;chr2:177053386..177053402,+!p1@HOXD1!0.99!8.86!HOXD1;;chr13:41240717..41240735,-!p2@FOXO1!0.98!59.79!FOXO1;;chr15:37392616..37392638,-!p2@MEIS2!0.96!25.84!MEIS2;;chr15:96873921..96873946,+!p1@NR2F2!0.95!232.52!NR2F2;;chr2:46602879..46602899,+!p8@EPAS1!0.95!9.60!EPAS1;;chr20:62462566..62462631,-!p1@ZBTB46!0.94!14.76!ZBTB46;;chr9:14314131..14314147,-!p2@NFIB!0.92!42.07!NFIB;;chr13:72441315..72441454,-!p1@DACH1!0.91!14.76!DACH1;;chr14:35873101..35873119,-!p6@NFKBIA!0.91!9.60!NFKBIA;;chr20:50721803..50721857,-!p2@ZFP64!0.90!11.07!ZFP64;;chr5:92918919..92918942,+!p1@NR2F1!0.89!31.74!NR2F1;;chr15:96874012..96874042,+!p2@NR2F2!0.87!61.27!NR2F2;;chr16:79634624..79634642,-!p1@MAF!0.87!26.57!MAF;;chr19:13213662..13213686,-!p1@LYL1!0.87!9.60!LYL1;;chr10:94449649..94449664,+!p3@HHEX!0.86!9.60!HHEX;;chr3:169381420..169381535,-!p1@MECOM!0.86!7.38!MECOM;;chr6:21597765..21597779,+!p2@SOX4!0.85!52.41!SOX4;;chr12:3068544..3068597,+!p1@TEAD4!0.85!39.12!TEAD4;;chr15:90544532..90544563,+!p1@ZNF710!0.85!12.55!ZNF710;;chr15:96876966..96877017,+!p12@NR2F2!0.85!8.86!NR2F2;;chr13:41240737..41240787,-!p1@FOXO1!0.84!76.03!FOXO1;;chr13:72441506..72441562,-!p3@DACH1!0.84!5.91!DACH1;;chr18:53068982..53068993,-!p20@TCF4!0.84!5.91!TCF4;;chr21:40177845..40177863,+!p1@ETS2!0.83!369.82!ETS2;;chr2:46524897..46524911,+!p2@EPAS1!0.83!16.98!EPAS1;;chr10:114710244..114710257,+!p3@TCF7L2!0.80!15.50!TCF7L2;;chr2:46602901..46602926,+!p7@EPAS1!0.80!7.38!EPAS1;;chr1:23885981..23886002,-!p1@ID3!0.79!995.77!ID3;;chr15:96874927..96874938,+!p8@NR2F2!0.79!11.81!NR2F2;;chr3:168864315..168864339,-!p2@MECOM!0.79!8.86!MECOM;;chr19:13213555..13213568,-!p5@LYL1!0.79!5.17!LYL1;;chr7:27169801..27169844,-!p2@HOXA4!0.79!5.17!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!0.79!5.17!HOXA5;;chr1:200011711..200011752,+!p3@NR5A2!0.79!5.17!NR5A2;;chr12:81110684..81110700,+!p1@MYF5!0.79!5.17!MYF5;;chr1:156470494..156470505,-!p3@MEF2D!0.77!7.38!MEF2D;;chr7:149470540..149470596,-!p2@ZNF467!0.77!6.64!ZNF467;;chr11:128563948..128564003,+!p1@FLI1!0.76!63.48!FLI1;;chr6:21593973..21593988,+!p1@SOX4!0.75!186.75!SOX4;;chr6:34204921..34204939,+!p3@HMGA1!0.75!155.75!HMGA1;;chr12:2986206..2986258,-!p2@FOXM1!0.74!30.26!FOXM1;;chr20:39317868..39317884,-!p1@MAFB!0.73!58.31!MAFB;;chr5:92918894..92918912,+!p2@NR2F1!0.73!15.50!NR2F1;;chr14:35873136..35873155,-!p9@NFKBIA!0.73!5.17!NFKBIA;;chr2:46524865..46524870,+!p9@EPAS1!0.73!5.17!EPAS1;;chr3:21792682..21792720,-!p1@ZNF385D!0.73!4.43!ZNF385D;;chr3:21792790..21792824,-!p4@ZNF385D!0.73!4.43!ZNF385D;;chr17:46671504..46671541,-!p2@HOXB5!0.73!4.43!HOXB5;;chr18:22932004..22932021,-!p2@ZNF521!0.73!4.43!ZNF521;;chr1:47695003..47695042,-!p2@TAL1!0.73!4.43!TAL1;;chr20:62680671..62680679,-!p2@SOX18!0.73!4.43!SOX18;;chr2:85360499..85360598,+!p1@TCF7L1!0.72!26.57!TCF7L1;;chr2:25475120..25475176,-!p2@DNMT3A!0.72!5.91!DNMT3A;;chr21:40177892..40177903,+!p2@ETS2!0.71!18.45!ETS2;;chr16:79634595..79634620,-!p2@MAF!0.71!8.12!MAF;;chr20:42295745..42295765,+!p1@MYBL2!0.70!73.82!MYBL2;;chr19:49865646..49865718,-!p1@TEAD2!0.70!39.12!TEAD2;;chr5:88179195..88179224,-!p3@MEF2C!0.69!6.64!MEF2C;;chr3:21792585..21792625,-!p2@ZNF385D!0.69!4.43!ZNF385D;;chr9:130954041..130954121,-!p2@CIZ1!0.68!18.45!CIZ1;;chr12:3068466..3068495,+!p3@TEAD4!0.68!8.86!TEAD4;;chr20:50159198..50159299,-!p1@NFATC2!0.68!5.91!NFATC2;;chr15:37392724..37392757,-!p1@MEIS2!0.67!19.19!MEIS2;;chr19:1652555..1652568,-!p2@TCF3!0.67!16.98!TCF3;;chr17:46622114..46622138,-!p4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AD2A;;chr12:46123273..46123329,+!p3@ARID2!0.28!2.21!ARID2;;chr14:75988771..75988826,+!p1@BATF!0.28!1.48!BATF;;chr15:96881221..96881240,+!p19@NR2F2!0.28!1.48!NR2F2;;chr17:4890672..4890692,-!p3@CAMTA2!0.28!1.48!CAMTA2;;chr18:56530756..56530774,+!p6@ZNF532!0.28!1.48!ZNF532;;chr20:33413523..33413534,-!p3@NCOA6!0.28!1.48!NCOA6;;chr5:88179518..88179569,-!p5@MEF2C!0.28!1.48!MEF2C;;chr6:21597283..21597312,+!p7@SOX4!0.28!1.48!SOX4;;chr1:43148059..43148108,+!p1@YBX1!0.27!107.77!YBX1;;chr14:105886150..105886224,+!p1@MTA1!0.27!56.84!MTA1;;chr17:80477571..80477637,+!p1@FOXK2!0.27!50.93!FOXK2;;chr9:137218281..137218340,+!p1@RXRA!0.27!47.98!RXRA;;chr14:21566731..21566836,-!p1@ZNF219!0.27!17.72!ZNF219;;chr12:7079780..7079791,-!p2@PHB2!0.27!8.12!PHB2;;chr19:47615477..47615491,-!p3@ZC3H4!0.27!6.64!ZC3H4;;chr16:2059754..2059777,-!p2@ZNF598!0.27!5.17!ZNF598;;chr1:249132484..249132505,+!p4@ZNF672!0.27!4.43!ZNF672;;chr9:73029219..73029289,-!p2@KLF9!0.27!4.43!KLF9;;chr6:44233297..44233330,-!p2@NFKBIE!0.27!3.69!NFKBIE;;chr2:42795651..42795676,+!p3@MTA3!0.27!3.69!MTA3;;chr19:52674898..52674931,-!p3@ZNF836!0.27!2.95!ZNF836;;chr7:99102592..99102620,+!p3@ZKSCAN5!0.27!2.95!ZKSCAN5;;chr3:150126038..150126052,+!p8@TSC22D2!0.27!2.21!TSC22D2;;chr12:124457725..124457736,+!p2@ZNF664!0.27!2.21!ZNF664;;chr17:42297282..42297300,-!p9@UBTF!0.27!2.21!UBTF;;chr19:11750566..11750627,+!p1@ZNF833P!0.27!1.48!ZNF833P;;chr12:11802909..11802920,+!p7@ETV6!0.27!1.48!ETV6;;chr12:49413577..49413581,-!p5@MLL2!0.27!1.48!MLL2;;chr12:49446120..49446135,-!p4@MLL2!0.27!1.48!MLL2;;chr8:81398478..81398495,+!p7@ZBTB10!0.27!1.48!ZBTB10;;chr1:33004996..33005017,+!p3@ZBTB8A!0.27!1.48!ZBTB8A;;chr20:30193083..30193098,+!p1@ID1!0.26!134.34!ID1;;chr14:35873947..35873965,-!p1@NFKBIA!0.26!104.82!NFKBIA;;chr22:41697520..41697613,+!p1@ZC3H7B!0.26!93.01!ZC3H7B;;chr22:41864662..41864708,-!p1@PHF5A!0.26!69.39!PHF5A;;chr16:3930681..3930721,-!p1@CREBBP!0.26!28.05!CREBBP;;chr19:17356697..17356762,-!p1@NR2F6!0.26!22.14!NR2F6;;chr17:35766967..35767022,+!p1@TADA2A!0.26!17.72!TADA2A;;chr19:56092195..56092248,-!p1@ZNF579!0.26!16.98!ZNF579;;chr22:41777927..41777971,+!p1@TEF!0.26!13.29!TEF;;chr20:3388238..3388323,-!p1@C20orf194!0.26!11.07!C20orf194;;chr8:144373550..144373617,+!p1@ZNF696!0.26!5.17!ZNF696;;chr3:5020939..5020952,+!p2@BHLHE40!0.26!4.43!BHLHE40;;chr1:164528384..164528409,+!p3@PBX1!0.26!4.43!PBX1;;chr7:6676986..6677005,+!p2@ENST00000427912!0.26!3.69!ZNF316;;chr8:86089369..86089408,+!p1@E2F5!0.26!3.69!E2F5;;chr12:66218255..66218304,+!p3@HMGA2!0.26!3.69!HMGA2;;chr10:51572339..51572376,+!p4@NCOA4!0.26!2.95!NCOA4;;chr4:146402925..146402957,+!p4@SMAD1!0.26!2.95!SMAD1;;chr19:55987998..55988026,+!p2@ZNF628!0.26!2.21!ZNF628;;chr1:247171347..247171366,-!p2@ZNF695!0.26!2.21!ZNF695;;chr18:3448455..3448480,+!p5@TGIF1!0.26!2.21!TGIF1;;chr18:53257068..53257086,-!p12@TCF4!0.26!1.48!TCF4;;chr4:87967965..87967983,+!p16@AFF1!0.26!1.48!AFF1;;chrX:107018969..107019024,-!p6@TSC22D3!0.26!1.48!TSC22D3;;chr15:31619013..31619095,+!p1@KLF13!0.25!36.91!KLF13;;chr4:103422499..103422632,+!p1@NFKB1!0.25!33.22!NFKB1;;chr19:6424783..6424802,-!p2@KHSRP!0.25!32.48!KHSRP;;chr18:51750888..51750920,-!p3@MBD2!0.25!11.07!MBD2;;chr18:72922811..72922827,+!p1@TSHZ1!0.25!7.38!TSHZ1;;chr16:2059797..2059837,-!p1@ZNF598!0.25!5.91!ZNF598;;chr19:12721790..12721810,+!p2@ZNF791!0.25!3.69!ZNF791;;chr1:8763463..8763499,-!p6@RERE!0.25!3.69!RERE;;chr9:3526360..3526421,-!p5@RFX3!0.25!2.21!RFX3;;chr9:35732514..35732530,+!p5@CREB3!0.25!1.48!CREB3;;chr3:107318157..107318172,+!p6@BBX!0.25!1.48!BBX;;chr19:12175504..12175519,+!p2@ZNF844!0.25!1.48!ZNF844;;chr6:34204642..34204664,+!p2@HMGA1!0.24!210.37!HMGA1;;chr17:46125707..46125746,+!p2@NFE2L1!0.24!82.67!NFE2L1;;chr17:40540377..40540481,-!p1@STAT3!0.24!79.72!STAT3;;chr19:42759266..42759290,-!p1@ERF!0.24!49.46!ERF;;chr20:44718538..44718612,-!p1@NCOA5!0.24!42.81!NCOA5;;chr17:61920023..61920110,-!p1@SMARCD2!0.24!21.41!SMARCD2;;chr11:64073022..64073056,+!p1@ESRRA!0.24!18.45!ESRRA;;chr11:62521614..62521646,-!p1@ZBTB3!0.24!7.38!ZBTB3;;chr7:149194843..149194922,-!p2@ZNF746!0.24!7.38!ZNF746;;chr17:42298615..42298692,-!p2@UBTF!0.24!7.38!UBTF;;chr3:185826764..185826803,-!p2@ETV5!0.24!5.17!ETV5;;chr3:44666551..44666577,+!p2@ZNF197!0.24!5.17!ZNF197;;chr4:146402966..146402985,+!p2@SMAD1!0.24!5.17!SMAD1;;chr19:56092252..56092287,-!p2@ZNF579!0.24!3.69!ZNF579;;chr11:58346585..58346607,+!p2@ZFP91!0.24!2.95!ZFP91;;chr15:66994561..66994597,+!p2@SMAD6!0.24!2.95!SMAD6;;chr8:145159447..145159458,+!p4@MAF1!0.24!2.95!MAF1;;chr7:27135591..27135658,-!p1@HOXA1!0.24!2.21!HOXA1;;chr2:242576946..242576996,-!p4@THAP4!0.24!2.21!THAP4;;chr12:57400227..57400245,-!p2@ZBTB39!0.24!2.21!ZBTB39;;chr12:66218212..66218244,+!p5@HMGA2!0.24!1.48!HMGA2;;chr5:43067583..43067606,+!p7@ZNF131!0.24!1.48!ZNF131;;chr6:168227611..168227624,+!p2@MLLT4!0.24!1.48!MLLT4;;chr7:127032114..127032163,-!p2@ZNF800!0.24!1.48!ZNF800;;chr19:58987786..58987805,+!p3@ZNF446!0.24!1.48!ZNF446;;chr3:71632894..71632909,-!p17@FOXP1!0.24!1.48!FOXP1;;chr15:96875041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| |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.83!888.00!SOX18;;chr8:10588010..10588030,-!p1@SOX7!2.07!116.63!SOX7;;chr21:39870339..39870443,-!p1@ERG!1.90!78.98!ERG;;chr8:55370487..55370503,+!p1@SOX17!1.86!70.86!SOX17;;chr10:94449703..94449718,+!p1@HHEX!1.67!170.51!HHEX;;chr17:6926362..6926377,+!p1@BCL6B!1.65!43.55!BCL6B;;chr12:96588368..96588394,+!p3@ELK3!1.63!109.25!ELK3;;chr5:71803177..71803255,-!p1@ZNF366!1.52!32.48!ZNF366;;chr7:149470641..149470694,-!p1@ZNF467!1.37!98.17!ZNF467;;chr9:124991204..124991246,-!p1@LHX6!1.29!18.45!LHX6;;chr8:11561684..11561751,+!p1@GATA4!1.25!16.98!GATA4;;chr19:13213511..13213545,-!p2@LYL1!1.24!17.72!LYL1;;chr2:46524537..46524553,+!p1@EPAS1!1.23!1530.93!EPAS1;;chr20:42543441..42543497,+!p1@TOX2!1.19!64.96!TOX2;;chr17:46675420..46675465,-!p3@HOXB6!1.18!16.24!HOXB6;;chr18:53068911..53068935,-!p4@TCF4!1.17!15.50!TCF4;;chr17:46655672..46655697,-!p3@HOXB4!1.15!13.29!HOXB4;;chr17:46671108..46671147,-!p1@HOXB5!1.11!11.81!HOXB5;;chr15:96873984..96873999,+!p3@NR2F2!1.09!84.15!NR2F2;;chr20:42543506..42543549,+!p2@TOX2!1.09!27.31!TOX2;;chr18:22932080..22932170,-!p1@ZNF521!1.08!47.24!ZNF521;;chr19:13213399..13213414,-!p6@LYL1!1.08!11.07!LYL1;;chr19:46801639..46801699,+!p1@HIF3A!1.08!11.07!HIF3A;;chr10:94449675..94449694,+!p2@HHEX!1.05!28.05!HHEX;;chr15:37390850..37390909,-!p3@MEIS2!1.04!19.93!MEIS2;;chr16:79633894..79633954,-!p3@MAF!1.04!19.19!MAF;;chr1:6479968..6479986,-!p1@HES2!1.03!9.60!HES2;;chr19:46800289..46800327,+!p2@HIF3A!0.99!8.86!HIF3A;;chr1:200008734..200008765,+!p2@NR5A2!0.99!8.86!NR5A2;;chr2:177053386..177053402,+!p1@HOXD1!0.99!8.86!HOXD1;;chr13:41240717..41240735,-!p2@FOXO1!0.98!59.79!FOXO1;;chr15:37392616..37392638,-!p2@MEIS2!0.96!25.84!MEIS2;;chr15:96873921..96873946,+!p1@NR2F2!0.95!232.52!NR2F2;;chr2:46602879..46602899,+!p8@EPAS1!0.95!9.60!EPAS1;;chr20:62462566..62462631,-!p1@ZBTB46!0.94!14.76!ZBTB46;;chr9:14314131..14314147,-!p2@NFIB!0.92!42.07!NFIB;;chr13:72441315..72441454,-!p1@DACH1!0.91!14.76!DACH1;;chr14:35873101..35873119,-!p6@NFKBIA!0.91!9.60!NFKBIA;;chr20:50721803..50721857,-!p2@ZFP64!0.90!11.07!ZFP64;;chr5:92918919..92918942,+!p1@NR2F1!0.89!31.74!NR2F1;;chr15:96874012..96874042,+!p2@NR2F2!0.87!61.27!NR2F2;;chr16:79634624..79634642,-!p1@MAF!0.87!26.57!MAF;;chr19:13213662..13213686,-!p1@LYL1!0.87!9.60!LYL1;;chr10:94449649..94449664,+!p3@HHEX!0.86!9.60!HHEX;;chr3:169381420..169381535,-!p1@MECOM!0.86!7.38!MECOM;;chr6:21597765..21597779,+!p2@SOX4!0.85!52.41!SOX4;;chr12:3068544..3068597,+!p1@TEAD4!0.85!39.12!TEAD4;;chr15:90544532..90544563,+!p1@ZNF710!0.85!12.55!ZNF710;;chr15:96876966..96877017,+!p12@NR2F2!0.85!8.86!NR2F2;;chr13:41240737..41240787,-!p1@FOXO1!0.84!76.03!FOXO1;;chr13:72441506..72441562,-!p3@DACH1!0.84!5.91!DACH1;;chr18:53068982..53068993,-!p20@TCF4!0.84!5.91!TCF4;;chr21:40177845..40177863,+!p1@ETS2!0.83!369.82!ETS2;;chr2:46524897..46524911,+!p2@EPAS1!0.83!16.98!EPAS1;;chr10:114710244..114710257,+!p3@TCF7L2!0.80!15.50!TCF7L2;;chr2:46602901..46602926,+!p7@EPAS1!0.80!7.38!EPAS1;;chr1:23885981..23886002,-!p1@ID3!0.79!995.77!ID3;;chr15:96874927..96874938,+!p8@NR2F2!0.79!11.81!NR2F2;;chr3:168864315..168864339,-!p2@MECOM!0.79!8.86!MECOM;;chr19:13213555..13213568,-!p5@LYL1!0.79!5.17!LYL1;;chr7:27169801..27169844,-!p2@HOXA4!0.79!5.17!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!0.79!5.17!HOXA5;;chr1:200011711..200011752,+!p3@NR5A2!0.79!5.17!NR5A2;;chr12:81110684..81110700,+!p1@MYF5!0.79!5.17!MYF5;;chr1:156470494..156470505,-!p3@MEF2D!0.77!7.38!MEF2D;;chr7:149470540..149470596,-!p2@ZNF467!0.77!6.64!ZNF467;;chr11:128563948..128564003,+!p1@FLI1!0.76!63.48!FLI1;;chr6:21593973..21593988,+!p1@SOX4!0.75!186.75!SOX4;;chr6:34204921..34204939,+!p3@HMGA1!0.75!155.75!HMGA1;;chr12:2986206..2986258,-!p2@FOXM1!0.74!30.26!FOXM1;;chr20:39317868..39317884,-!p1@MAFB!0.73!58.31!MAFB;;chr5:92918894..92918912,+!p2@NR2F1!0.73!15.50!NR2F1;;chr14:35873136..35873155,-!p9@NFKBIA!0.73!5.17!NFKBIA;;chr2:46524865..46524870,+!p9@EPAS1!0.73!5.17!EPAS1;;chr3:21792682..21792720,-!p1@ZNF385D!0.73!4.43!ZNF385D;;chr3:21792790..21792824,-!p4@ZNF385D!0.73!4.43!ZNF385D;;chr17:46671504..46671541,-!p2@HOXB5!0.73!4.43!HOXB5;;chr18:22932004..22932021,-!p2@ZNF521!0.73!4.43!ZNF521;;chr1:47695003..47695042,-!p2@TAL1!0.73!4.43!TAL1;;chr20:62680671..62680679,-!p2@SOX18!0.73!4.43!SOX18;;chr2:85360499..85360598,+!p1@TCF7L1!0.72!26.57!TCF7L1;;chr2:25475120..25475176,-!p2@DNMT3A!0.72!5.91!DNMT3A;;chr21:40177892..40177903,+!p2@ETS2!0.71!18.45!ETS2;;chr16:79634595..79634620,-!p2@MAF!0.71!8.12!MAF;;chr20:42295745..42295765,+!p1@MYBL2!0.70!73.82!MYBL2;;chr19:49865646..49865718,-!p1@TEAD2!0.70!39.12!TEAD2;;chr5:88179195..88179224,-!p3@MEF2C!0.69!6.64!MEF2C;;chr3:21792585..21792625,-!p2@ZNF385D!0.69!4.43!ZNF385D;;chr9:130954041..130954121,-!p2@CIZ1!0.68!18.45!CIZ1;;chr12:3068466..3068495,+!p3@TEAD4!0.68!8.86!TEAD4;;chr20:50159198..50159299,-!p1@NFATC2!0.68!5.91!NFATC2;;chr15:37392724..37392757,-!p1@MEIS2!0.67!19.19!MEIS2;;chr19:1652555..1652568,-!p2@TCF3!0.67!16.98!TCF3;;chr17:46622114..46622138,-!p4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AD2A;;chr12:46123273..46123329,+!p3@ARID2!0.28!2.21!ARID2;;chr14:75988771..75988826,+!p1@BATF!0.28!1.48!BATF;;chr15:96881221..96881240,+!p19@NR2F2!0.28!1.48!NR2F2;;chr17:4890672..4890692,-!p3@CAMTA2!0.28!1.48!CAMTA2;;chr18:56530756..56530774,+!p6@ZNF532!0.28!1.48!ZNF532;;chr20:33413523..33413534,-!p3@NCOA6!0.28!1.48!NCOA6;;chr5:88179518..88179569,-!p5@MEF2C!0.28!1.48!MEF2C;;chr6:21597283..21597312,+!p7@SOX4!0.28!1.48!SOX4;;chr1:43148059..43148108,+!p1@YBX1!0.27!107.77!YBX1;;chr14:105886150..105886224,+!p1@MTA1!0.27!56.84!MTA1;;chr17:80477571..80477637,+!p1@FOXK2!0.27!50.93!FOXK2;;chr9:137218281..137218340,+!p1@RXRA!0.27!47.98!RXRA;;chr14:21566731..21566836,-!p1@ZNF219!0.27!17.72!ZNF219;;chr12:7079780..7079791,-!p2@PHB2!0.27!8.12!PHB2;;chr19:47615477..47615491,-!p3@ZC3H4!0.27!6.64!ZC3H4;;chr16:2059754..2059777,-!p2@ZNF598!0.27!5.17!ZNF598;;chr1:249132484..249132505,+!p4@ZNF672!0.27!4.43!ZNF672;;chr9:73029219..73029289,-!p2@KLF9!0.27!4.43!KLF9;;chr6:44233297..44233330,-!p2@NFKBIE!0.27!3.69!NFKBIE;;chr2:42795651..42795676,+!p3@MTA3!0.27!3.69!MTA3;;chr19:52674898..52674931,-!p3@ZNF836!0.27!2.95!ZNF836;;chr7:99102592..99102620,+!p3@ZKSCAN5!0.27!2.95!ZKSCAN5;;chr3:150126038..150126052,+!p8@TSC22D2!0.27!2.21!TSC22D2;;chr12:124457725..124457736,+!p2@ZNF664!0.27!2.21!ZNF664;;chr17:42297282..42297300,-!p9@UBTF!0.27!2.21!UBTF;;chr19:11750566..11750627,+!p1@ZNF833P!0.27!1.48!ZNF833P;;chr12:11802909..11802920,+!p7@ETV6!0.27!1.48!ETV6;;chr12:49413577..49413581,-!p5@MLL2!0.27!1.48!MLL2;;chr12:49446120..49446135,-!p4@MLL2!0.27!1.48!MLL2;;chr8:81398478..81398495,+!p7@ZBTB10!0.27!1.48!ZBTB10;;chr1:33004996..33005017,+!p3@ZBTB8A!0.27!1.48!ZBTB8A;;chr20:30193083..30193098,+!p1@ID1!0.26!134.34!ID1;;chr14:35873947..35873965,-!p1@NFKBIA!0.26!104.82!NFKBIA;;chr22:41697520..41697613,+!p1@ZC3H7B!0.26!93.01!ZC3H7B;;chr22:41864662..41864708,-!p1@PHF5A!0.26!69.39!PHF5A;;chr16:3930681..3930721,-!p1@CREBBP!0.26!28.05!CREBBP;;chr19:17356697..17356762,-!p1@NR2F6!0.26!22.14!NR2F6;;chr17:35766967..35767022,+!p1@TADA2A!0.26!17.72!TADA2A;;chr19:56092195..56092248,-!p1@ZNF579!0.26!16.98!ZNF579;;chr22:41777927..41777971,+!p1@TEF!0.26!13.29!TEF;;chr20:3388238..3388323,-!p1@C20orf194!0.26!11.07!C20orf194;;chr8:144373550..144373617,+!p1@ZNF696!0.26!5.17!ZNF696;;chr3:5020939..5020952,+!p2@BHLHE40!0.26!4.43!BHLHE40;;chr1:164528384..164528409,+!p3@PBX1!0.26!4.43!PBX1;;chr7:6676986..6677005,+!p2@ENST00000427912!0.26!3.69!ZNF316;;chr8:86089369..86089408,+!p1@E2F5!0.26!3.69!E2F5;;chr12:66218255..66218304,+!p3@HMGA2!0.26!3.69!HMGA2;;chr10:51572339..51572376,+!p4@NCOA4!0.26!2.95!NCOA4;;chr4:146402925..146402957,+!p4@SMAD1!0.26!2.95!SMAD1;;chr19:55987998..55988026,+!p2@ZNF628!0.26!2.21!ZNF628;;chr1:247171347..247171366,-!p2@ZNF695!0.26!2.21!ZNF695;;chr18:3448455..3448480,+!p5@TGIF1!0.26!2.21!TGIF1;;chr18:53257068..53257086,-!p12@TCF4!0.26!1.48!TCF4;;chr4:87967965..87967983,+!p16@AFF1!0.26!1.48!AFF1;;chrX:107018969..107019024,-!p6@TSC22D3!0.26!1.48!TSC22D3;;chr15:31619013..31619095,+!p1@KLF13!0.25!36.91!KLF13;;chr4:103422499..103422632,+!p1@NFKB1!0.25!33.22!NFKB1;;chr19:6424783..6424802,-!p2@KHSRP!0.25!32.48!KHSRP;;chr18:51750888..51750920,-!p3@MBD2!0.25!11.07!MBD2;;chr18:72922811..72922827,+!p1@TSHZ1!0.25!7.38!TSHZ1;;chr16:2059797..2059837,-!p1@ZNF598!0.25!5.91!ZNF598;;chr19:12721790..12721810,+!p2@ZNF791!0.25!3.69!ZNF791;;chr1:8763463..8763499,-!p6@RERE!0.25!3.69!RERE;;chr9:3526360..3526421,-!p5@RFX3!0.25!2.21!RFX3;;chr9:35732514..35732530,+!p5@CREB3!0.25!1.48!CREB3;;chr3:107318157..107318172,+!p6@BBX!0.25!1.48!BBX;;chr19:12175504..12175519,+!p2@ZNF844!0.25!1.48!ZNF844;;chr6:34204642..34204664,+!p2@HMGA1!0.24!210.37!HMGA1;;chr17:46125707..46125746,+!p2@NFE2L1!0.24!82.67!NFE2L1;;chr17:40540377..40540481,-!p1@STAT3!0.24!79.72!STAT3;;chr19:42759266..42759290,-!p1@ERF!0.24!49.46!ERF;;chr20:44718538..44718612,-!p1@NCOA5!0.24!42.81!NCOA5;;chr17:61920023..61920110,-!p1@SMARCD2!0.24!21.41!SMARCD2;;chr11:64073022..64073056,+!p1@ESRRA!0.24!18.45!ESRRA;;chr11:62521614..62521646,-!p1@ZBTB3!0.24!7.38!ZBTB3;;chr7:149194843..149194922,-!p2@ZNF746!0.24!7.38!ZNF746;;chr17:42298615..42298692,-!p2@UBTF!0.24!7.38!UBTF;;chr3:185826764..185826803,-!p2@ETV5!0.24!5.17!ETV5;;chr3:44666551..44666577,+!p2@ZNF197!0.24!5.17!ZNF197;;chr4:146402966..146402985,+!p2@SMAD1!0.24!5.17!SMAD1;;chr19:56092252..56092287,-!p2@ZNF579!0.24!3.69!ZNF579;;chr11:58346585..58346607,+!p2@ZFP91!0.24!2.95!ZFP91;;chr15:66994561..66994597,+!p2@SMAD6!0.24!2.95!SMAD6;;chr8:145159447..145159458,+!p4@MAF1!0.24!2.95!MAF1;;chr7:27135591..27135658,-!p1@HOXA1!0.24!2.21!HOXA1;;chr2:242576946..242576996,-!p4@THAP4!0.24!2.21!THAP4;;chr12:57400227..57400245,-!p2@ZBTB39!0.24!2.21!ZBTB39;;chr12:66218212..66218244,+!p5@HMGA2!0.24!1.48!HMGA2;;chr5:43067583..43067606,+!p7@ZNF131!0.24!1.48!ZNF131;;chr6:168227611..168227624,+!p2@MLLT4!0.24!1.48!MLLT4;;chr7:127032114..127032163,-!p2@ZNF800!0.24!1.48!ZNF800;;chr19:58987786..58987805,+!p3@ZNF446!0.24!1.48!ZNF446;;chr3:71632894..71632909,-!p17@FOXP1!0.24!1.48!FOXP1;;chr15:96875041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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000182;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000398;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002294;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003513;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854 | |||
|ffid_belonging_in_development=CL:0000134,CL:0000222,CL:0000223 | |ffid_belonging_in_development=CL:0000134,CL:0000222,CL:0000223 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 38: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor1.CNhs12075.11521-119H9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor1.CNhs12075.11521-119H9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor1.CNhs12075.11521-119H9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor1.CNhs12075.11521-119H9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor1.CNhs12075.11521-119H9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11521-119H9 | |id=FF:11521-119H9 | ||
|is_a=EFO:0002091;;FF:0000076;;FF:0000210 | |is_a=EFO:0002091;;FF:0000076;;FF:0000210 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12075 | |||
|library_id_phase_based=2:CNhs12075 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11521 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.ACAGTG.11521 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11521 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.ACAGTG.11521 | |||
|name=Hepatic Sinusoidal Endothelial Cells, donor1 | |name=Hepatic Sinusoidal Endothelial Cells, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12075,LSID838,release011,COMPLETED | |profile_hcage=CNhs12075,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10014,,, | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC5005 | |rna_catalog_number=SC5005 | ||
Line 60: | Line 82: | ||
|rna_tube_id=119H9 | |rna_tube_id=119H9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10014.ACAGTG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 82: | Line 106: | ||
|top_motifs=SOX{8,9,10}:1.94665030345;PAX6:1.93867597756;RXR{A,B,G}:1.84460209255;ESRRA:1.6088437943;PAX1,9:1.28557262254;PBX1:1.26255223229;TFAP4:1.25836641516;TFAP2{A,C}:1.25135207797;TLX1..3_NFIC{dimer}:1.24876727415;NR5A1,2:1.19904323453;XCPE1{core}:1.10331860998;AR:1.03792041964;TP53:0.979933717717;ALX1:0.947333985996;RBPJ:0.925766155033;ZNF423:0.878285493164;EBF1:0.864945149352;bHLH_family:0.823463366147;GATA6:0.818973972588;ETS1,2:0.80738489335;SMAD1..7,9:0.685003283494;NFATC1..3:0.664589195346;IKZF2:0.628077883415;PAX5:0.617648165769;ARID5B:0.613075212741;LEF1_TCF7_TCF7L1,2:0.603694401476;HIC1:0.596794805784;SPIB:0.551072472481;ZIC1..3:0.532075118415;CRX:0.530115053764;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.519750822675;ZNF148:0.507770013566;RXRA_VDR{dimer}:0.505460982313;HNF4A_NR2F1,2:0.500465090317;REST:0.480461860574;TFAP2B:0.4657696827;GTF2A1,2:0.46393998273;FOXQ1:0.457301106855;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.453920662452;SOX17:0.449861518521;ZBTB6:0.428767324019;GZF1:0.421621935381;SOX5:0.40792965264;SP1:0.405494020342;MTE{core}:0.367902536205;SOX2:0.348714231019;POU6F1:0.343404116088;HES1:0.340668359663;SPZ1:0.33567807969;NKX2-2,8:0.327212058928;FOX{I1,J2}:0.324249315876;ZFP161:0.321234466139;RORA:0.318312280235;TFCP2:0.305512217615;FOXM1:0.237075404743;NANOG:0.234560633778;LMO2:0.21505889367;HAND1,2:0.194112173939;TFDP1:0.138421737889;LHX3,4:0.132132425659;FOX{D1,D2}:0.123185631211;HOX{A5,B5}:0.118130569158;ESR1:0.0950853350992;TEAD1:0.0943385695855;MED-1{core}:0.0711308757013;ELF1,2,4:0.070399649679;PATZ1:0.0625236479114;STAT2,4,6:0.0569133842523;PPARG:0.056537126606;GCM1,2:0.0532469537924;IKZF1:0.0503052807038;RREB1:0.0499443278695;MYOD1:0.0485898076713;SREBF1,2:0.0439744989726;EP300:0.0392940041501;ZNF238:0.0221506911176;TAL1_TCF{3,4,12}:0.0201711053597;SPI1:0.0154037222141;ONECUT1,2:0.00167704378507;NFKB1_REL_RELA:0.000521387648136;SRF:-0.0023187967437;NKX2-3_NKX2-5:-0.00746586812344;NR3C1:-0.0176593790175;MYB:-0.0277549496668;NFY{A,B,C}:-0.040882934527;UFEwm:-0.0416692400479;NFE2:-0.0524809363276;GFI1:-0.0673068690189;TBP:-0.0724718923738;NANOG{mouse}:-0.0977278145755;FOSL2:-0.100099150823;T:-0.10200987814;E2F1..5:-0.111873736976;NFE2L2:-0.11916729127;HNF1A:-0.122533264267;GTF2I:-0.123636477109;MEF2{A,B,C,D}:-0.12632885824;HBP1_HMGB_SSRP1_UBTF:-0.126787235569;MAZ:-0.132683151296;MZF1:-0.134523606014;PAX4:-0.139202462846;NHLH1,2:-0.15343650579;CDC5L:-0.194685459914;CUX2:-0.19828755241;PAX2:-0.209342277384;POU3F1..4:-0.229141490122;EN1,2:-0.229324501497;BACH2:-0.243103854829;FOS_FOS{B,L1}_JUN{B,D}:-0.247759520877;POU1F1:-0.251569971679;EGR1..3:-0.261157925025;PRRX1,2:-0.261934146181;HMX1:-0.281037070684;GATA4:-0.296658151442;TEF:-0.297217432769;PAX8:-0.320068347657;IRF1,2:-0.324823155257;NR6A1:-0.34175547089;GFI1B:-0.358263394476;SNAI1..3:-0.374220462302;MTF1:-0.379158506327;HLF:-0.38483062739;ZNF143:-0.385438647383;PRDM1:-0.388656919409;HOXA9_MEIS1:-0.39664393706;POU2F1..3:-0.408144436119;FOXL1:-0.411801797824;FOX{F1,F2,J1}:-0.432164253452;GLI1..3:-0.436440873975;PAX3,7:-0.436857818681;PITX1..3:-0.438785945286;TOPORS:-0.443685746819;RFX1:-0.477772169299;YY1:-0.537448755849;NRF1:-0.560096211267;ATF6:-0.564435045267;CREB1:-0.570947920772;KLF4:-0.580298959822;HOX{A6,A7,B6,B7}:-0.58260645491;ADNP_IRX_SIX_ZHX:-0.588993473311;NFE2L1:-0.598727258119;IRF7:-0.603046324627;FOXP3:-0.630485445171;MYFfamily:-0.651516740362;STAT1,3:-0.652622310517;JUN:-0.654114924;FOXA2:-0.661005911261;BREu{core}:-0.670937984348;NR1H4:-0.671763291217;HMGA1,2:-0.677087823005;ATF2:-0.694241454304;OCT4_SOX2{dimer}:-0.711557536351;POU5F1:-0.736112361307;TGIF1:-0.740382591715;RUNX1..3:-0.743346415676;XBP1:-0.748611843749;NKX3-2:-0.750659020861;ZEB1:-0.751240600878;DMAP1_NCOR{1,2}_SMARC:-0.76329293761;FOXO1,3,4:-0.775766561011;NFIX:-0.820703839584;CEBPA,B_DDIT3:-0.832261987438;PDX1:-0.870450971559;MAFB:-0.872999018447;AHR_ARNT_ARNT2:-0.87623435299;AIRE:-0.883152999345;FOXP1:-0.89372262109;RFX2..5_RFXANK_RFXAP:-0.898763040427;VSX1,2:-0.917468768468;EVI1:-0.925399124511;ATF4:-0.967278717415;FOXN1:-1.03075949907;STAT5{A,B}:-1.0879992656;ZNF384:-1.09388516703;ALX4:-1.11341945989;HOX{A4,D4}:-1.12870793678;NFIL3:-1.13942121099;NKX2-1,4:-1.15807403042;ZBTB16:-1.23006442762;BPTF:-1.26451715029;TBX4,5:-1.29412046485;CDX1,2,4:-1.31110477294;DBP:-1.31702666109;FOXD3:-1.34755235614;TLX2:-1.36965016997;ATF5_CREB3:-1.42775521313;MYBL2:-1.43873855148;ELK1,4_GABP{A,B1}:-1.44748804304;NKX6-1,2:-1.59530588802;HIF1A:-1.60676619399;NKX3-1:-1.61995460293;HSF1,2:-1.63331355366 | |top_motifs=SOX{8,9,10}:1.94665030345;PAX6:1.93867597756;RXR{A,B,G}:1.84460209255;ESRRA:1.6088437943;PAX1,9:1.28557262254;PBX1:1.26255223229;TFAP4:1.25836641516;TFAP2{A,C}:1.25135207797;TLX1..3_NFIC{dimer}:1.24876727415;NR5A1,2:1.19904323453;XCPE1{core}:1.10331860998;AR:1.03792041964;TP53:0.979933717717;ALX1:0.947333985996;RBPJ:0.925766155033;ZNF423:0.878285493164;EBF1:0.864945149352;bHLH_family:0.823463366147;GATA6:0.818973972588;ETS1,2:0.80738489335;SMAD1..7,9:0.685003283494;NFATC1..3:0.664589195346;IKZF2:0.628077883415;PAX5:0.617648165769;ARID5B:0.613075212741;LEF1_TCF7_TCF7L1,2:0.603694401476;HIC1:0.596794805784;SPIB:0.551072472481;ZIC1..3:0.532075118415;CRX:0.530115053764;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.519750822675;ZNF148:0.507770013566;RXRA_VDR{dimer}:0.505460982313;HNF4A_NR2F1,2:0.500465090317;REST:0.480461860574;TFAP2B:0.4657696827;GTF2A1,2:0.46393998273;FOXQ1:0.457301106855;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.453920662452;SOX17:0.449861518521;ZBTB6:0.428767324019;GZF1:0.421621935381;SOX5:0.40792965264;SP1:0.405494020342;MTE{core}:0.367902536205;SOX2:0.348714231019;POU6F1:0.343404116088;HES1:0.340668359663;SPZ1:0.33567807969;NKX2-2,8:0.327212058928;FOX{I1,J2}:0.324249315876;ZFP161:0.321234466139;RORA:0.318312280235;TFCP2:0.305512217615;FOXM1:0.237075404743;NANOG:0.234560633778;LMO2:0.21505889367;HAND1,2:0.194112173939;TFDP1:0.138421737889;LHX3,4:0.132132425659;FOX{D1,D2}:0.123185631211;HOX{A5,B5}:0.118130569158;ESR1:0.0950853350992;TEAD1:0.0943385695855;MED-1{core}:0.0711308757013;ELF1,2,4:0.070399649679;PATZ1:0.0625236479114;STAT2,4,6:0.0569133842523;PPARG:0.056537126606;GCM1,2:0.0532469537924;IKZF1:0.0503052807038;RREB1:0.0499443278695;MYOD1:0.0485898076713;SREBF1,2:0.0439744989726;EP300:0.0392940041501;ZNF238:0.0221506911176;TAL1_TCF{3,4,12}:0.0201711053597;SPI1:0.0154037222141;ONECUT1,2:0.00167704378507;NFKB1_REL_RELA:0.000521387648136;SRF:-0.0023187967437;NKX2-3_NKX2-5:-0.00746586812344;NR3C1:-0.0176593790175;MYB:-0.0277549496668;NFY{A,B,C}:-0.040882934527;UFEwm:-0.0416692400479;NFE2:-0.0524809363276;GFI1:-0.0673068690189;TBP:-0.0724718923738;NANOG{mouse}:-0.0977278145755;FOSL2:-0.100099150823;T:-0.10200987814;E2F1..5:-0.111873736976;NFE2L2:-0.11916729127;HNF1A:-0.122533264267;GTF2I:-0.123636477109;MEF2{A,B,C,D}:-0.12632885824;HBP1_HMGB_SSRP1_UBTF:-0.126787235569;MAZ:-0.132683151296;MZF1:-0.134523606014;PAX4:-0.139202462846;NHLH1,2:-0.15343650579;CDC5L:-0.194685459914;CUX2:-0.19828755241;PAX2:-0.209342277384;POU3F1..4:-0.229141490122;EN1,2:-0.229324501497;BACH2:-0.243103854829;FOS_FOS{B,L1}_JUN{B,D}:-0.247759520877;POU1F1:-0.251569971679;EGR1..3:-0.261157925025;PRRX1,2:-0.261934146181;HMX1:-0.281037070684;GATA4:-0.296658151442;TEF:-0.297217432769;PAX8:-0.320068347657;IRF1,2:-0.324823155257;NR6A1:-0.34175547089;GFI1B:-0.358263394476;SNAI1..3:-0.374220462302;MTF1:-0.379158506327;HLF:-0.38483062739;ZNF143:-0.385438647383;PRDM1:-0.388656919409;HOXA9_MEIS1:-0.39664393706;POU2F1..3:-0.408144436119;FOXL1:-0.411801797824;FOX{F1,F2,J1}:-0.432164253452;GLI1..3:-0.436440873975;PAX3,7:-0.436857818681;PITX1..3:-0.438785945286;TOPORS:-0.443685746819;RFX1:-0.477772169299;YY1:-0.537448755849;NRF1:-0.560096211267;ATF6:-0.564435045267;CREB1:-0.570947920772;KLF4:-0.580298959822;HOX{A6,A7,B6,B7}:-0.58260645491;ADNP_IRX_SIX_ZHX:-0.588993473311;NFE2L1:-0.598727258119;IRF7:-0.603046324627;FOXP3:-0.630485445171;MYFfamily:-0.651516740362;STAT1,3:-0.652622310517;JUN:-0.654114924;FOXA2:-0.661005911261;BREu{core}:-0.670937984348;NR1H4:-0.671763291217;HMGA1,2:-0.677087823005;ATF2:-0.694241454304;OCT4_SOX2{dimer}:-0.711557536351;POU5F1:-0.736112361307;TGIF1:-0.740382591715;RUNX1..3:-0.743346415676;XBP1:-0.748611843749;NKX3-2:-0.750659020861;ZEB1:-0.751240600878;DMAP1_NCOR{1,2}_SMARC:-0.76329293761;FOXO1,3,4:-0.775766561011;NFIX:-0.820703839584;CEBPA,B_DDIT3:-0.832261987438;PDX1:-0.870450971559;MAFB:-0.872999018447;AHR_ARNT_ARNT2:-0.87623435299;AIRE:-0.883152999345;FOXP1:-0.89372262109;RFX2..5_RFXANK_RFXAP:-0.898763040427;VSX1,2:-0.917468768468;EVI1:-0.925399124511;ATF4:-0.967278717415;FOXN1:-1.03075949907;STAT5{A,B}:-1.0879992656;ZNF384:-1.09388516703;ALX4:-1.11341945989;HOX{A4,D4}:-1.12870793678;NFIL3:-1.13942121099;NKX2-1,4:-1.15807403042;ZBTB16:-1.23006442762;BPTF:-1.26451715029;TBX4,5:-1.29412046485;CDX1,2,4:-1.31110477294;DBP:-1.31702666109;FOXD3:-1.34755235614;TLX2:-1.36965016997;ATF5_CREB3:-1.42775521313;MYBL2:-1.43873855148;ELK1,4_GABP{A,B1}:-1.44748804304;NKX6-1,2:-1.59530588802;HIF1A:-1.60676619399;NKX3-1:-1.61995460293;HSF1,2:-1.63331355366 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11521-119H9;search_select_hide=table117:FF:11521-119H9 | |||
}} | }} |
Latest revision as of 18:06, 4 June 2020
Name: | Hepatic Sinusoidal Endothelial Cells, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12075 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12075
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12075
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.944 |
10 | 10 | 0.566 |
100 | 100 | 0.926 |
101 | 101 | 0.352 |
102 | 102 | 0.266 |
103 | 103 | 0.266 |
104 | 104 | 0.974 |
105 | 105 | 0.23 |
106 | 106 | 0.1 |
107 | 107 | 0.0134 |
108 | 108 | 0.249 |
109 | 109 | 0.302 |
11 | 11 | 0.0466 |
110 | 110 | 0.0296 |
111 | 111 | 0.992 |
112 | 112 | 0.516 |
113 | 113 | 0.528 |
114 | 114 | 0.433 |
115 | 115 | 0.602 |
116 | 116 | 0.627 |
117 | 117 | 0.817 |
118 | 118 | 0.465 |
119 | 119 | 0.0822 |
12 | 12 | 0.666 |
120 | 120 | 0.0384 |
121 | 121 | 0.929 |
122 | 122 | 0.681 |
123 | 123 | 0.397 |
124 | 124 | 0.501 |
125 | 125 | 0.763 |
126 | 126 | 0.613 |
127 | 127 | 0.506 |
128 | 128 | 0.0782 |
129 | 129 | 0.154 |
13 | 13 | 0.462 |
130 | 130 | 0.669 |
131 | 131 | 0.111 |
132 | 132 | 0.108 |
133 | 133 | 0.228 |
134 | 134 | 0.72 |
135 | 135 | 0.453 |
136 | 136 | 0.646 |
137 | 137 | 0.216 |
138 | 138 | 0.796 |
139 | 139 | 0.825 |
14 | 14 | 0.73 |
140 | 140 | 0.959 |
141 | 141 | 0.357 |
142 | 142 | 0.621 |
143 | 143 | 0.0976 |
144 | 144 | 0.431 |
145 | 145 | 0.117 |
146 | 146 | 0.203 |
147 | 147 | 0.536 |
148 | 148 | 0.19 |
149 | 149 | 0.0285 |
15 | 15 | 0.429 |
150 | 150 | 0.294 |
151 | 151 | 0.682 |
152 | 152 | 0.0758 |
153 | 153 | 0.075 |
154 | 154 | 0.165 |
155 | 155 | 0.743 |
156 | 156 | 0.529 |
157 | 157 | 0.524 |
158 | 158 | 0.869 |
159 | 159 | 0.8 |
16 | 16 | 0.485 |
160 | 160 | 0.00547 |
161 | 161 | 0.903 |
162 | 162 | 0.182 |
163 | 163 | 0.384 |
164 | 164 | 0.797 |
165 | 165 | 0.448 |
166 | 166 | 0.0942 |
167 | 167 | 0.0693 |
168 | 168 | 0.268 |
169 | 169 | 0.0326 |
17 | 17 | 0.298 |
18 | 18 | 0.911 |
19 | 19 | 0.0981 |
2 | 2 | 0.252 |
20 | 20 | 0.695 |
21 | 21 | 0.939 |
22 | 22 | 0.102 |
23 | 23 | 0.18 |
24 | 24 | 0.713 |
25 | 25 | 0.631 |
26 | 26 | 0.416 |
27 | 27 | 0.0477 |
28 | 28 | 0.506 |
29 | 29 | 0.767 |
3 | 3 | 0.687 |
30 | 30 | 0.357 |
31 | 31 | 0.489 |
32 | 32 | 0.291 |
33 | 33 | 0.253 |
34 | 34 | 0.0258 |
35 | 35 | 0.755 |
36 | 36 | 0.404 |
37 | 37 | 0.534 |
38 | 38 | 0.109 |
39 | 39 | 0.321 |
4 | 4 | 0.457 |
40 | 40 | 0.0176 |
41 | 41 | 0.0213 |
42 | 42 | 0.88 |
43 | 43 | 0.538 |
44 | 44 | 0.417 |
45 | 45 | 0.131 |
46 | 46 | 0.204 |
47 | 47 | 0.623 |
48 | 48 | 0.238 |
49 | 49 | 0.604 |
5 | 5 | 0.901 |
50 | 50 | 0.691 |
51 | 51 | 0.24 |
52 | 52 | 0.581 |
53 | 53 | 0.775 |
54 | 54 | 0.345 |
55 | 55 | 0.981 |
56 | 56 | 0.491 |
57 | 57 | 0.524 |
58 | 58 | 0.636 |
59 | 59 | 0.0323 |
6 | 6 | 0.382 |
60 | 60 | 0.336 |
61 | 61 | 0.879 |
62 | 62 | 0.668 |
63 | 63 | 0.516 |
64 | 64 | 0.193 |
65 | 65 | 0.0261 |
66 | 66 | 0.644 |
67 | 67 | 0.65 |
68 | 68 | 0.249 |
69 | 69 | 0.852 |
7 | 7 | 0.62 |
70 | 70 | 0.545 |
71 | 71 | 0.745 |
72 | 72 | 0.559 |
73 | 73 | 0.0513 |
74 | 74 | 0.184 |
75 | 75 | 0.486 |
76 | 76 | 0.329 |
77 | 77 | 0.0253 |
78 | 78 | 0.509 |
79 | 79 | 0.267 |
8 | 8 | 0.0195 |
80 | 80 | 0.409 |
81 | 81 | 0.768 |
82 | 82 | 0.146 |
83 | 83 | 0.661 |
84 | 84 | 0.138 |
85 | 85 | 0.111 |
86 | 86 | 0.936 |
87 | 87 | 0.347 |
88 | 88 | 0.745 |
89 | 89 | 0.267 |
9 | 9 | 0.164 |
90 | 90 | 0.157 |
91 | 91 | 0.271 |
92 | 92 | 0.249 |
93 | 93 | 0.597 |
94 | 94 | 0.717 |
95 | 95 | 0.177 |
96 | 96 | 0.319 |
97 | 97 | 0.329 |
98 | 98 | 0.525 |
99 | 99 | 0.0393 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12075
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000076 hepatic sinusoidal endothelial cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000215 (barrier cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000182 (hepatocyte)
0002262 (endothelial cell of sinusoid)
1000398 (endothelial cell of hepatic sinusoid)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0001007 (digestive system)
0000055 (vessel)
0001281 (hepatic sinusoid)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0000353 (parenchyma)
0003497 (abdomen blood vessel)
0003909 (sinusoid)
0005177 (trunk region element)
0002365 (exocrine gland)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0005172 (abdomen element)
0006925 (digestive gland)
0002049 (vasculature)
0002530 (gland)
0003835 (abdominal segment blood vessel)
0003513 (trunk blood vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0005173 (abdominal segment element)
0004535 (cardiovascular system)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0001280 (liver parenchyma)
0004647 (liver lobule)
0002330 (exocrine system)
0004537 (blood vasculature)
0000916 (abdomen)
0002423 (hepatobiliary system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000076 (hepatic sinusoidal endothelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)
CL:0000223 (endodermal cell)