FF:11541-120B2: Difference between revisions

Latest revision as of 18:07, 4 June 2020

Name:	Smooth Muscle Cells - Umbilical Vein, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12597
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	umbilical vein
dev stage	NA
sex	NA
age	NA
cell type	smooth muscle cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC8025
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005129

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12597		CAGE		DRX008510		DRR009382

Accession ID Hg19

Library id		BAM		CTSS
CNhs12597		DRZ000807		DRZ002192

Accession ID Hg38

Library id		BAM		CTSS
CNhs12597		DRZ012157		DRZ013542

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.155
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.45
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.155
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0582
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0379
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.104
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.413
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0582
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.115
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.142
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.182
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0582
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.218
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.00307
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.751
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0582
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0274
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.539
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.34
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.157
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.235
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0865
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.478
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.235
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.346
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12597

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.124
MA0003.1	MA0003.1	0.538
MA0004.1	MA0004.1	0.0604
MA0006.1	MA0006.1	0.193
MA0007.1	MA0007.1	0.608
MA0009.1	MA0009.1	0.712
MA0014.1	MA0014.1	0.91
MA0017.1	MA0017.1	0.793
MA0018.2	MA0018.2	0.441
MA0019.1	MA0019.1	0.368
MA0024.1	MA0024.1	4.71755e-5
MA0025.1	MA0025.1	0.0271
MA0027.1	MA0027.1	0.857
MA0028.1	MA0028.1	1.73912e-5
MA0029.1	MA0029.1	0.725
MA0030.1	MA0030.1	0.0164
MA0031.1	MA0031.1	0.0693
MA0035.2	MA0035.2	0.598
MA0038.1	MA0038.1	9.0413e-5
MA0039.2	MA0039.2	0.667
MA0040.1	MA0040.1	0.538
MA0041.1	MA0041.1	0.795
MA0042.1	MA0042.1	0.617
MA0043.1	MA0043.1	0.276
MA0046.1	MA0046.1	0.543
MA0047.2	MA0047.2	0.192
MA0048.1	MA0048.1	8.09788e-4
MA0050.1	MA0050.1	1.80477e-7
MA0051.1	MA0051.1	1.50741e-4
MA0052.1	MA0052.1	0.645
MA0055.1	MA0055.1	5.24848e-4
MA0057.1	MA0057.1	0.721
MA0058.1	MA0058.1	0.121
MA0059.1	MA0059.1	0.526
MA0060.1	MA0060.1	2.46707e-10
MA0061.1	MA0061.1	0.339
MA0062.2	MA0062.2	0.146
MA0065.2	MA0065.2	0.603
MA0066.1	MA0066.1	0.766
MA0067.1	MA0067.1	0.0652
MA0068.1	MA0068.1	0.719
MA0069.1	MA0069.1	0.433
MA0070.1	MA0070.1	0.149
MA0071.1	MA0071.1	0.99
MA0072.1	MA0072.1	0.415
MA0073.1	MA0073.1	0.399
MA0074.1	MA0074.1	0.589
MA0076.1	MA0076.1	0.00898
MA0077.1	MA0077.1	0.368
MA0078.1	MA0078.1	0.92
MA0079.2	MA0079.2	0.0654
MA0080.2	MA0080.2	3.86558e-9
MA0081.1	MA0081.1	0.0363
MA0083.1	MA0083.1	0.00103
MA0084.1	MA0084.1	0.087
MA0087.1	MA0087.1	0.863
MA0088.1	MA0088.1	0.00833
MA0090.1	MA0090.1	9.21102e-4
MA0091.1	MA0091.1	0.906
MA0092.1	MA0092.1	0.466
MA0093.1	MA0093.1	0.132
MA0099.2	MA0099.2	0.233
MA0100.1	MA0100.1	0.0113
MA0101.1	MA0101.1	0.554
MA0102.2	MA0102.2	0.331
MA0103.1	MA0103.1	1.48048e-5
MA0104.2	MA0104.2	0.816
MA0105.1	MA0105.1	0.0563
MA0106.1	MA0106.1	0.03
MA0107.1	MA0107.1	0.102
MA0108.2	MA0108.2	0.00889
MA0111.1	MA0111.1	0.858
MA0112.2	MA0112.2	0.346
MA0113.1	MA0113.1	0.985
MA0114.1	MA0114.1	0.732
MA0115.1	MA0115.1	0.464
MA0116.1	MA0116.1	0.458
MA0117.1	MA0117.1	0.346
MA0119.1	MA0119.1	0.366
MA0122.1	MA0122.1	0.446
MA0124.1	MA0124.1	0.0758
MA0125.1	MA0125.1	0.494
MA0131.1	MA0131.1	0.53
MA0135.1	MA0135.1	0.0929
MA0136.1	MA0136.1	0.00282
MA0137.2	MA0137.2	0.854
MA0138.2	MA0138.2	0.502
MA0139.1	MA0139.1	0.81
MA0140.1	MA0140.1	0.679
MA0141.1	MA0141.1	0.203
MA0142.1	MA0142.1	0.45
MA0143.1	MA0143.1	0.516
MA0144.1	MA0144.1	0.928
MA0145.1	MA0145.1	0.349
MA0146.1	MA0146.1	0.826
MA0147.1	MA0147.1	0.929
MA0148.1	MA0148.1	0.624
MA0149.1	MA0149.1	0.828
MA0150.1	MA0150.1	0.0575
MA0152.1	MA0152.1	0.0322
MA0153.1	MA0153.1	0.647
MA0154.1	MA0154.1	0.576
MA0155.1	MA0155.1	0.512
MA0156.1	MA0156.1	0.155
MA0157.1	MA0157.1	0.15
MA0159.1	MA0159.1	0.042
MA0160.1	MA0160.1	0.167
MA0162.1	MA0162.1	0.021
MA0163.1	MA0163.1	0.0029
MA0164.1	MA0164.1	0.684
MA0258.1	MA0258.1	0.0993
MA0259.1	MA0259.1	0.961

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12597

Novel motif	Logo	P-value
1	1	0.984
10	10	0.52
100	100	0.597
101	101	0.665
102	102	0.0834
103	103	0.997
104	104	0.618
105	105	0.748
106	106	0.0045
107	107	0.757
108	108	0.41
109	109	0.784
11	11	0.938
110	110	0.223
111	111	0.485
112	112	0.0388
113	113	0.189
114	114	0.316
115	115	0.342
116	116	0.373
117	117	0.49
118	118	0.665
119	119	0.152
12	12	0.468
120	120	0.194
121	121	0.641
122	122	0.0443
123	123	0.00107
124	124	0.929
125	125	0.756
126	126	0.808
127	127	0.936
128	128	0.423
129	129	0.228
13	13	0.126
130	130	0.026
131	131	0.511
132	132	0.839
133	133	0.646
134	134	0.746
135	135	0.404
136	136	0.704
137	137	0.0833
138	138	0.0596
139	139	1.57057e-4
14	14	0.315
140	140	0.883
141	141	0.2
142	142	0.677
143	143	0.773
144	144	0.834
145	145	0.709
146	146	0.95
147	147	0.34
148	148	0.961
149	149	0.761
15	15	0.353
150	150	0.824
151	151	0.529
152	152	0.513
153	153	0.538
154	154	0.904
155	155	0.0386
156	156	0.333
157	157	0.125
158	158	0.218
159	159	0.369
16	16	0.536
160	160	0.886
161	161	0.483
162	162	0.626
163	163	0.448
164	164	0.562
165	165	0.81
166	166	0.0548
167	167	0.915
168	168	0.529
169	169	0.693
17	17	0.982
18	18	0.487
19	19	0.418
2	2	0.478
20	20	0.943
21	21	0.295
22	22	0.974
23	23	0.0651
24	24	0.564
25	25	0.252
26	26	0.342
27	27	0.56
28	28	0.779
29	29	0.628
3	3	0.616
30	30	0.543
31	31	0.641
32	32	0.064
33	33	0.141
34	34	0.611
35	35	0.75
36	36	0.478
37	37	0.284
38	38	0.327
39	39	0.977
4	4	0.629
40	40	0.487
41	41	0.0426
42	42	0.905
43	43	0.303
44	44	0.816
45	45	0.346
46	46	0.839
47	47	0.956
48	48	0.9
49	49	0.285
5	5	0.396
50	50	0.553
51	51	0.747
52	52	0.165
53	53	0.169
54	54	0.507
55	55	0.914
56	56	0.987
57	57	0.98
58	58	0.106
59	59	0.422
6	6	0.863
60	60	0.011
61	61	0.377
62	62	0.0308
63	63	0.929
64	64	0.592
65	65	0.183
66	66	0.0232
67	67	0.701
68	68	0.823
69	69	0.723
7	7	0.399
70	70	2.72358e-5
71	71	0.723
72	72	0.787
73	73	0.839
74	74	0.556
75	75	0.598
76	76	0.174
77	77	0.763
78	78	0.981
79	79	0.59
8	8	0.926
80	80	0.536
81	81	0.265
82	82	0.0447
83	83	0.289
84	84	0.267
85	85	0.0286
86	86	0.407
87	87	0.519
88	88	0.779
89	89	0.192
9	9	0.971
90	90	0.8
91	91	0.234
92	92	0.195
93	93	0.9
94	94	0.618
95	95	0.314
96	96	0.359
97	97	0.845
98	98	0.0106
99	99	0.0204

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12597

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000177 human smooth muscle cell of umbilical vein sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002588 (smooth muscle cell of the umbilical vein)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010260 (umbilical blood vessel)
0003920 (venous blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0002066 (umbilical vein)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000177 (human smooth muscle cell of umbilical vein sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001134,UBERON:0001638,UBERON:0002100,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0005291,UBERON:0002036,UBERON:0002385,UBERON:0001981,UBERON:0003920,UBERON:0002049,UBERON:0000486,UBERON:0007500,UBERON:0003104,UBERON:0000914,UBERON:0005256,UBERON:0006598,UBERON:0007798,UBERON:0001015,UBERON:0002532,UBERON:0002066,UBERON:0002329,UBERON:0002204,UBERON:0004535,UBERON:0000383,UBERON:0004537,UBERON:0003077,UBERON:0004290,UBERON:0009142,UBERON:0004582,UBERON:0003081,UBERON:0001009,UBERON:0006603,UBERON:0003082,UBERON:0004872,UBERON:0006965,UBERON:0003059,UBERON:0007282,UBERON:0009618,UBERON:0007285
+|DRA_sample_Accession=CAGE@SAMD00005129
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0000680,CL:0002321,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000220,CL:0000004,CL:0000192,CL:0000211,CL:0000056,CL:0000255,CL:0000359,CL:0000222,CL:0002588,CL:0000355,CL:0000514
+|accession_numbers=CAGE;DRX008510;DRR009382;DRZ000807;DRZ002192;DRZ012157;DRZ013542
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003920,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002588
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000177
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.12!129.36!HAND2;;chr12:66218255..66218304,+!p3@HMGA2!1.84!175.97!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.64!42.31!HOXC5;;chr12:66218598..66218645,+!p2@HMGA2!1.63!186.43!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.61!107.42!TWIST1;;chr12:66218212..66218244,+!p5@HMGA2!1.49!43.17!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!1.41!46.18!HMGA2;;chr12:54402745..54402788,+!p1@HOXC8!1.41!24.81!HOXC8;;chr12:54393880..54393962,+!p1@HOXC9!1.39!23.38!HOXC9;;chr4:174450089..174450153,-!p2@HAND2!1.31!19.65!HAND2;;chr12:66218836..66218888,+!p1@HMGA2!1.30!173.10!HMGA2;;chr11:46299199..46299233,+!p1@CREB3L1!1.28!90.49!CREB3L1;;chr5:134369905..134369972,-!p1@PITX1!1.25!25.38!PITX1;;chr7:35293685..35293718,-!p1@TBX20!1.25!16.78!TBX20;;chr4:111544219..111544240,-!p1@PITX2!1.25!16.64!PITX2;;chr12:54378923..54378966,+!p1@HOXC10!1.24!16.49!HOXC10;;chr12:54379029..54379057,+!p2@HOXC10!1.21!15.35!HOXC10;;chr4:111558135..111558198,-!p2@PITX2!1.21!15.06!PITX2;;chr17:46682321..46682362,-!p1@HOXB6!1.18!14.20!HOXB6;;chr15:57511609..57511651,+!p2@TCF12!1.16!22.37!TCF12;;chr1:170633348..170633399,+!p2@PRRX1!1.14!17.64!PRRX1;;chr2:176969228..176969260,+!p1@HOXD11!1.14!12.91!HOXD11;;chr5:137804484..137804498,+!p2@EGR1!1.13!50.34!EGR1;;chr12:66218573..66218596,+!p7@HMGA2!1.13!18.50!HMGA2;;chr12:66218378..66218401,+!p6@HMGA2!1.12!19.07!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!1.11!14.91!FOXF1;;chr7:27224842..27224872,-!p1@HOXA11!1.11!11.90!HOXA11;;chr6:134210243..134210257,+!p1@TCF21!1.11!11.76!TCF21;;chr4:174451350..174451363,-!p3@HAND2!1.09!11.33!HAND2;;chr11:61520075..61520136,+!p1@C11orf9!1.08!23.23!C11orf9;;chr12:66218443..66218461,+!p8@HMGA2!1.05!13.19!HMGA2;;chr18:19749386..19749404,+!p2@GATA6!1.04!14.34!GATA6;;chr5:134369879..134369898,-!p2@PITX1!1.03!9.61!PITX1;;chr19:46801639..46801699,+!p1@HIF3A!1.01!9.18!HIF3A;;chr12:54380404..54380433,+!p3@HOXC10!1.00!8.89!HOXC10;;chr7:27205136..27205164,-!p1@HOXA9!0.99!8.75!HOXA9;;chr11:46299539..46299620,+!p2@CREB3L1!0.98!14.63!CREB3L1;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.23!OSR1;;chr5:92918919..92918942,+!p1@NR2F1!0.96!37.29!NR2F1;;chr2:5832508..5832524,+!p1@SOX11!0.95!7.89!SOX11;;chr7:27224795..27224840,-!p2@HOXA11!0.93!7.46!HOXA11;;chr6:34204672..34204692,+!p1@HMGA1!0.92!856.17!HMGA1;;chr6:34204921..34204939,+!p3@HMGA1!0.92!229.60!HMGA1;;chr12:54402729..54402743,+!p3@HOXC8!0.91!7.17!HOXC8;;chrY:21906594..21906622,-!p1@KDM5D!0.91!7.17!KDM5D;;chr12:54402790..54402805,+!p2@HOXC8!0.90!7.03!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.90!7.03!HOXC5;;chr12:66218469..66218477,+!p16@HMGA2!0.90!7.03!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!0.88!21.66!GATA6;;chr12:66218152..66218174,+!p10@HMGA2!0.88!7.17!HMGA2;;chr12:66218420..66218439,+!p12@HMGA2!0.87!6.45!HMGA2;;chr12:54384370..54384382,+!p5@HOXC6!0.84!5.88!HOXC6;;chr17:59477233..59477263,+!p1@TBX2!0.83!19.07!TBX2;;chr11:65686732..65686756,+!p2@DRAP1!0.82!25.10!DRAP1;;chr1:170632285..170632309,+!p1@PRRX1!0.82!6.45!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!0.81!5.45!HOXA3;;chr5:137801160..137801176,+!p1@EGR1!0.80!578.38!EGR1;;chr12:115121962..115121987,-!p1@TBX3!0.80!48.04!TBX3;;chr8:49833948..49833973,-!p2@SNAI2!0.80!36.57!SNAI2;;chr7:27205106..27205134,-!p2@HOXA9!0.80!5.31!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!0.80!5.31!HOXA10;;chr12:54422217..54422239,+!p3@HOXC6!0.80!5.31!HOXC6;;chr17:46622070..46622109,-!p1@HOXB2!0.79!12.19!HOXB2;;chr12:66218923..66218934,+!p14@HMGA2!0.79!5.16!HMGA2;;chrY:2803415..2803468,+!p1@ZFY!0.79!5.16!ZFY;;chr12:66218003..66218018,+!p9@HMGA2!0.78!6.31!HMGA2;;chr9:77112244..77112262,+!p1@RORB!0.78!5.74!RORB;;chr17:46675558..46675577,-!p2@HOXB6!0.78!5.02!HOXB6;;chr12:66218904..66218913,+!p11@HMGA2!0.78!5.02!HMGA2;;chr1:158979872..158979898,+!p3@IFI16!0.77!16.06!IFI16;;chr8:49833978..49833996,-!p1@SNAI2!0.76!109.28!SNAI2;;chr6:45390025..45390076,+!p2@RUNX2!0.76!12.19!RUNX2;;chr6:155635583..155635644,-!p1@TFB1M!0.75!65.83!TFB1M;;chr19:45971246..45971265,+!p1@FOSB!0.74!93.93!FOSB;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.74!HOXB7;;chr2:176969179..176969226,+!p2@HOXD11!0.74!4.45!HOXD11;;chr11:65686802..65686818,+!p6@DRAP1!0.73!8.03!DRAP1;;chr12:66358080..66358094,+!p15@HMGA2!0.72!4.30!HMGA2;;chr4:111544254..111544270,-!p3@PITX2!0.71!4.16!PITX2;;chr15:96874012..96874042,+!p2@NR2F2!0.70!41.02!NR2F2;;chr7:26191809..26191890,+!p1@NFE2L3!0.70!22.23!NFE2L3;;chr17:59477197..59477212,+!p2@TBX2!0.70!7.46!TBX2;;chr19:45260775..45260838,+!p5@BCL3!0.70!5.45!BCL3;;chr5:92918956..92918969,+!p4@NR2F1!0.69!4.30!NR2F1;;chr1:151032860..151032918,+!p1@MLLT11!0.68!51.63!MLLT11;;chr20:42543441..42543497,+!p1@TOX2!0.68!19.07!TOX2;;chr3:168864315..168864339,-!p2@MECOM!0.68!6.74!MECOM;;chr15:83953397..83953425,-!p1@BNC1!0.68!4.45!BNC1;;chr15:42749722..42749739,-!p2@ZFP106!0.67!7.17!ZFP106;;chr16:86612320..86612394,+!p1@FOXL1!0.67!3.73!FOXL1;;chr2:176994408..176994492,+!p1@HOXD8!0.67!3.73!HOXD8;;chr7:19157043..19157088,-!p2@TWIST1!0.66!10.04!TWIST1;;chr15:37390850..37390909,-!p3@MEIS2!0.66!7.74!MEIS2;;chr6:85473156..85473210,-!p2@TBX18!0.66!4.45!TBX18;;chr15:37392724..37392757,-!p1@MEIS2!0.65!18.50!MEIS2;;chr17:46622114..46622138,-!p4@HOXB2!0.65!5.74!HOXB2;;chr17:46690839..46690884,-!p1@HOXB8!0.65!3.44!HOXB8;;chr12:54380036..54380091,+!p4@HOXC10!0.65!3.44!HOXC10;;chr14:62162258..62162269,+!p2@HIF1A!0.64!37.86!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!0.64!20.51!HIF1A;;chr20:50179368..50179392,-!p2@NFATC2!0.64!4.59!NFATC2;;chr6:45390300..45390335,+!p4@RUNX2!0.62!5.31!RUNX2;;chr11:65667884..65667895,-!p2@FOSL1!0.61!14.05!FOSL1;;chr15:37392094..37392116,-!p6@MEIS2!0.61!4.02!MEIS2;;chr6:45296048..45296082,+!p1@RUNX2!0.61!3.59!RUNX2;;chr11:65667846..65667868,-!p1@FOSL1!0.60!96.66!FOSL1;;chr15:37391588..37391604,-!p11@MEIS2!0.60!4.02!MEIS2;;chr6:34205372..34205412,+!p5@HMGA1!0.59!17.35!HMGA1;;chr20:42543506..42543549,+!p2@TOX2!0.59!7.89!TOX2;;chr7:27196267..27196311,-!p1@HOXA7!0.59!2.87!HOXA7;;chr17:46621937..46621966,-!p2@HOXB2!0.58!8.75!HOXB2;;chr15:96873984..96873999,+!p3@NR2F2!0.57!24.67!NR2F2;;chr2:121493425..121493474,+!p1@GLI2!0.57!6.88!GLI2;;chr18:19749353..19749367,+!p4@GATA6!0.57!2.72!GATA6;;chr12:66357214..66357233,+!p13@HMGA2!0.57!2.72!HMGA2;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.56!6.60!SOHLH2;;chr20:50721803..50721857,-!p2@ZFP64!0.56!4.59!ZFP64;;chr11:46299186..46299195,+!p3@CREB3L1!0.56!3.01!CREB3L1;;chr18:19749517..19749531,+!p3@GATA6!0.55!5.16!GATA6;;chr17:59477275..59477286,+!p3@TBX2!0.55!3.59!TBX2;;chr12:115122005..115122016,-!p3@TBX3!0.55!3.16!TBX3;;chr18:53068911..53068935,-!p4@TCF4!0.55!3.01!TCF4;;chr8:93074803..93074845,-!p1@RUNX1T1!0.55!2.58!RUNX1T1;;chr7:14029283..14029311,-!p1@ETV1!0.54!16.35!ETV1;;chr17:41277372..41277418,-!p1@BRCA1!0.54!11.04!BRCA1;;chr1:158979851..158979865,+!p5@IFI16!0.54!6.31!IFI16;;chr3:141121847..141121868,+!p5@ZBTB38!0.54!4.16!ZBTB38;;chr15:37392703..37392717,-!p8@MEIS2!0.54!3.87!MEIS2;;chr14:75745523..75745537,+!p1@FOS!0.53!374.88!FOS;;chr14:55493763..55493824,-!p1@WDHD1!0.53!22.95!WDHD1;;chr11:65686952..65686975,+!p5@DRAP1!0.53!16.35!DRAP1;;chr15:37390374..37390422,-!p9@MEIS2!0.53!3.16!MEIS2;;chr1:170633262..170633285,+!p3@PRRX1!0.53!2.87!PRRX1;;chr1:158979792..158979814,+!p2@IFI16!0.52!28.40!IFI16;;chr8:77593474..77593612,+!p1@ZFHX4!0.52!12.19!ZFHX4;;chr15:96869255..96869291,+!p6@NR2F2!0.52!4.88!NR2F2;;chr2:166326200..166326216,+!p1@CSRNP3!0.52!3.73!CSRNP3;;chr3:25469724..25469773,+!p1@RARB!0.52!3.73!RARB;;chr15:37392534..37392562,-!p10@MEIS2!0.52!2.58!MEIS2;;chr12:115122318..115122331,-!p2@TBX3!0.52!2.29!TBX3;;chr12:66218037..66218042,+!p18@HMGA2!0.52!2.29!HMGA2;;chr2:102091144..102091183,-!p2@RFX8!0.52!2.29!RFX8;;chr3:25469815..25469866,+!p3@RARB!0.52!2.29!RARB;;chr19:46800289..46800327,+!p2@HIF3A!0.52!2.29!HIF3A;;chr6:45390002..45390023,+!p6@RUNX2!0.51!4.45!RUNX2;;chr14:62162224..62162254,+!p1@HIF1A!0.50!421.20!HIF1A;;chr15:67357924..67357952,+!p2@SMAD3!0.50!18.50!SMAD3;;chr1:151032833..151032850,+!p3@MLLT11!0.50!5.88!MLLT11;;chr5:72744445..72744466,-!p2@FOXD1!0.50!4.16!FOXD1;;chr19:13134772..13134822,+!p2@NFIX!0.50!3.59!NFIX;;chr7:27196217..27196246,-!p2@HOXA7!0.50!2.15!HOXA7;;chr7:35293665..35293680,-!p2@TBX20!0.50!2.15!TBX20;;chr11:46299443..46299459,+!p4@CREB3L1!0.50!2.15!CREB3L1;;chr12:54378984..54378996,+!p7@HOXC10!0.50!2.15!HOXC10;;chr12:54380112..54380126,+!p5@HOXC10!0.50!2.15!HOXC10;;chr3:150126759..150126784,+!p2@TSC22D2!0.49!12.33!TSC22D2;;chr5:92918894..92918912,+!p2@NR2F1!0.49!8.60!NR2F1;;chr15:57511589..57511608,+!p4@TCF12!0.48!2.01!TCF12;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.48!2.01!SEBOX;;chr3:141087339..141087387,+!p2@ZBTB38!0.47!27.25!ZBTB38;;chr3:141087393..141087426,+!p3@ZBTB38!0.47!10.04!ZBTB38;;chr2:25475120..25475176,-!p2@DNMT3A!0.47!2.87!DNMT3A;;chr1:59249688..59249703,-!p3@JUN!0.46!15.20!JUN;;chr5:178368186..178368238,+!p1@ZNF454!0.46!4.02!ZNF454;;chr6:1312325..1312340,+!p1@FOXQ1!0.46!3.59!FOXQ1;;chr15:96869114..96869160,+!p11@NR2F2!0.46!2.87!NR2F2;;chr15:80843484..80843499,+!p5@ARNT2!0.46!1.86!ARNT2;;chr6:45390399..45390418,+!p15@RUNX2!0.46!1.86!RUNX2;;chr2:5832493..5832507,+!p2@SOX11!0.46!1.86!SOX11;;chr3:25470156..25470227,+!p2@RARB!0.46!1.86!RARB;;chr4:111558118..111558133,-!p5@PITX2!0.46!1.86!PITX2;;chr10:119303078..119303169,+!p2@EMX2!0.46!1.86!EMX2;;chr11:46333934..46333963,+!p5@CREB3L1!0.46!1.86!CREB3L1;;chr12:54394309..54394336,+!p2@HOXC9!0.46!1.86!HOXC9;;chr12:85673977..85674015,+!p1@ALX1!0.46!1.86!ALX1;;chr17:41622765..41622821,-!p2@ETV4!0.45!3.16!ETV4;;chr11:113930425..113930471,+!p1@ZBTB16!0.45!3.01!ZBTB16;;chr6:45390077..45390105,+!p9@RUNX2!0.45!2.58!RUNX2;;chr19:23299814..23299844,+!p1@ZNF730!0.45!2.44!ZNF730;;chr5:137804357..137804390,+!p4@EGR1!0.45!2.29!EGR1;;chr5:92919375..92919438,+!p6@NR2F1!0.45!2.01!NR2F1;;chr8:48650715..48650735,-!p1@CEBPD!0.44!322.10!CEBPD;;chr12:96588143..96588185,+!p1@ELK3!0.44!30.40!ELK3;;chr19:20011744..20011770,+!p1@ZNF93!0.44!9.18!ZNF93;;chr2:239756671..239756732,+!p1@TWIST2!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002588;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001638;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010260
+|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor1.CNhs12597.11541-120B2.hg38.nobarcode.ctss.bed.gz
 |id=FF:11541-120B2
-|is_a=EFO:0002091;;FF:0000002;;FF:0000177;;FF:0000210
+|is_a=EFO:0002091;;FF:0000177
+|is_obsolete=
+|library_id=CNhs12597
+|library_id_phase_based=2:CNhs12597
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11541
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11541
 |name=Smooth Muscle Cells - Umbilical Vein, donor1
 |namespace=FANTOM5
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12597,LSID912,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=120
 |rna_catalog_number=SC8025
@@ Line 57: / Line 79: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 69: / Line 92: @@
 |sample_ethnicity=
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.53828002570372e-267!GO:0043226;organelle;1.01712047855319e-214!GO:0043229;intracellular organelle;1.96467074010521e-214!GO:0043231;intracellular membrane-bound organelle;5.02754641736418e-211!GO:0043227;membrane-bound organelle;1.23439061508745e-210!GO:0005737;cytoplasm;4.7861279543269e-196!GO:0044422;organelle part;2.12456649504739e-162!GO:0044446;intracellular organelle part;6.43280395299155e-161!GO:0044444;cytoplasmic part;1.51870274814527e-137!GO:0032991;macromolecular complex;5.50698623088902e-113!GO:0030529;ribonucleoprotein complex;4.37407718288919e-98!GO:0044237;cellular metabolic process;1.3365780932242e-95!GO:0044238;primary metabolic process;2.82042920150192e-95!GO:0005634;nucleus;2.11195017847742e-89!GO:0043170;macromolecule metabolic process;3.14917355193397e-89!GO:0044428;nuclear part;5.19510317317306e-83!GO:0043233;organelle lumen;2.5617778198522e-81!GO:0031974;membrane-enclosed lumen;2.5617778198522e-81!GO:0005515;protein binding;3.49231770594594e-78!GO:0003723;RNA binding;1.79277973062943e-77!GO:0005739;mitochondrion;6.16698528836374e-70!GO:0005840;ribosome;2.17411711405891e-58!GO:0043234;protein complex;1.1551917026068e-56!GO:0016043;cellular component organization and biogenesis;8.09565073912665e-55!GO:0006412;translation;3.77558632610168e-54!GO:0006396;RNA processing;4.74270903735026e-54!GO:0003735;structural constituent of ribosome;2.01115026126443e-51!GO:0043283;biopolymer metabolic process;3.5084041071415e-50!GO:0031090;organelle membrane;3.84160663956949e-50!GO:0019538;protein metabolic process;6.99032460140475e-49!GO:0031981;nuclear lumen;1.23544345438326e-48!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.59971354135124e-47!GO:0010467;gene expression;5.64049698398648e-47!GO:0015031;protein transport;8.80448481119032e-47!GO:0033036;macromolecule localization;2.02122945149308e-46!GO:0044429;mitochondrial part;4.84323242277876e-46!GO:0009058;biosynthetic process;2.51558802366598e-44!GO:0044260;cellular macromolecule metabolic process;9.88418837879228e-44!GO:0033279;ribosomal subunit;1.0183028588704e-43!GO:0044267;cellular protein metabolic process;2.82442198801459e-43!GO:0043228;non-membrane-bound organelle;3.66849043909626e-43!GO:0043232;intracellular non-membrane-bound organelle;3.66849043909626e-43!GO:0045184;establishment of protein localization;6.78243564744939e-43!GO:0031967;organelle envelope;8.57021132297034e-43!GO:0008104;protein localization;1.06365511839162e-42!GO:0031975;envelope;2.23010026382137e-42!GO:0016071;mRNA metabolic process;2.58488466774307e-42!GO:0009059;macromolecule biosynthetic process;1.28561466910637e-41!GO:0005829;cytosol;8.33304904385575e-41!GO:0044249;cellular biosynthetic process;1.96757265197982e-40!GO:0006996;organelle organization and biogenesis;1.02005316440404e-39!GO:0008380;RNA splicing;1.72371756805918e-39!GO:0065003;macromolecular complex assembly;6.02125918579814e-38!GO:0006397;mRNA processing;1.44713723909448e-37!GO:0006259;DNA metabolic process;1.96567412770719e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.84844537642702e-36!GO:0046907;intracellular transport;8.28048351480475e-36!GO:0022607;cellular component assembly;5.77923596492783e-34!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.37497854527305e-32!GO:0007049;cell cycle;8.19008859739515e-32!GO:0006886;intracellular protein transport;1.24066579831371e-30!GO:0005654;nucleoplasm;3.35190232278389e-30!GO:0005681;spliceosome;3.55155164269529e-29!GO:0005740;mitochondrial envelope;5.14349351612402e-29!GO:0003676;nucleic acid binding;6.95847253548772e-29!GO:0031966;mitochondrial membrane;5.04651863562467e-27!GO:0019866;organelle inner membrane;1.45172158923053e-26!GO:0044445;cytosolic part;6.28613148732687e-26!GO:0005743;mitochondrial inner membrane;1.37732087078662e-24!GO:0000278;mitotic cell cycle;1.98886096037427e-24!GO:0044451;nucleoplasm part;2.94878801580634e-24!GO:0000166;nucleotide binding;4.84238171953509e-24!GO:0022402;cell cycle process;6.01359296495754e-24!GO:0051649;establishment of cellular localization;1.53054086671973e-23!GO:0006457;protein folding;1.53054086671973e-23!GO:0016462;pyrophosphatase activity;1.98087844671409e-23!GO:0051641;cellular localization;2.05095572046971e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.29340584992563e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;3.73505474391584e-23!GO:0015935;small ribosomal subunit;1.1648088699155e-22!GO:0017111;nucleoside-triphosphatase activity;1.63615609670936e-22!GO:0006119;oxidative phosphorylation;1.73389667096679e-22!GO:0015934;large ribosomal subunit;4.40588239818921e-22!GO:0012505;endomembrane system;7.3359745654566e-22!GO:0022618;protein-RNA complex assembly;1.80777614237299e-21!GO:0005694;chromosome;3.10567166201782e-21!GO:0006974;response to DNA damage stimulus;3.76336490658075e-21!GO:0044455;mitochondrial membrane part;6.17996372590853e-21!GO:0031980;mitochondrial lumen;1.44658681149817e-20!GO:0005759;mitochondrial matrix;1.44658681149817e-20!GO:0016070;RNA metabolic process;4.12042218131203e-20!GO:0048770;pigment granule;1.90956461228543e-19!GO:0042470;melanosome;1.90956461228543e-19!GO:0044427;chromosomal part;2.83244279902115e-19!GO:0005783;endoplasmic reticulum;3.14588124133407e-19!GO:0005730;nucleolus;4.92468995657895e-19!GO:0000087;M phase of mitotic cell cycle;5.0297139828186e-19!GO:0022403;cell cycle phase;7.13463243200921e-19!GO:0007067;mitosis;1.32782762096971e-18!GO:0008135;translation factor activity, nucleic acid binding;4.17605796328853e-18!GO:0051301;cell division;5.26666355108287e-18!GO:0006281;DNA repair;1.29974774125571e-17!GO:0005746;mitochondrial respiratory chain;3.34403406277486e-17!GO:0051276;chromosome organization and biogenesis;6.11503882154079e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.62503070668865e-17!GO:0000502;proteasome complex (sensu Eukaryota);8.86886519992011e-17!GO:0032553;ribonucleotide binding;9.32812539835892e-17!GO:0032555;purine ribonucleotide binding;9.32812539835892e-17!GO:0016874;ligase activity;1.15458830612201e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.43239269946106e-16!GO:0017076;purine nucleotide binding;3.20542151223037e-16!GO:0044432;endoplasmic reticulum part;3.48720972849774e-16!GO:0005761;mitochondrial ribosome;3.72655691859034e-16!GO:0000313;organellar ribosome;3.72655691859034e-16!GO:0006512;ubiquitin cycle;5.79029826110683e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;1.03121892789349e-15!GO:0000279;M phase;1.04164985511185e-15!GO:0044265;cellular macromolecule catabolic process;1.06484989843466e-15!GO:0008134;transcription factor binding;1.35834548181955e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.41045590112532e-15!GO:0042254;ribosome biogenesis and assembly;1.71606578299724e-15!GO:0019941;modification-dependent protein catabolic process;1.89086604754288e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.89086604754288e-15!GO:0009719;response to endogenous stimulus;2.35337347170764e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.35498765803139e-15!GO:0043285;biopolymer catabolic process;2.43111451058839e-15!GO:0005794;Golgi apparatus;2.43332249783996e-15!GO:0051186;cofactor metabolic process;2.44573481955871e-15!GO:0044257;cellular protein catabolic process;3.02916738741639e-15!GO:0006605;protein targeting;5.59688195587326e-15!GO:0050136;NADH dehydrogenase (quinone) activity;5.7525452166978e-15!GO:0003954;NADH dehydrogenase activity;5.7525452166978e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.7525452166978e-15!GO:0051082;unfolded protein binding;7.39650149623591e-15!GO:0003743;translation initiation factor activity;1.00102280040145e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.00102280040145e-14!GO:0000375;RNA splicing, via transesterification reactions;1.00102280040145e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.00102280040145e-14!GO:0005635;nuclear envelope;2.03969610005453e-14!GO:0048193;Golgi vesicle transport;2.16541574741974e-14!GO:0006413;translational initiation;3.52624527068076e-14!GO:0009057;macromolecule catabolic process;5.32171690419556e-14!GO:0006260;DNA replication;5.95044751813267e-14!GO:0044248;cellular catabolic process;1.16238677059248e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.16238677059248e-13!GO:0042773;ATP synthesis coupled electron transport;1.16238677059248e-13!GO:0031965;nuclear membrane;1.20401036581863e-13!GO:0005524;ATP binding;1.23047816919231e-13!GO:0044453;nuclear membrane part;1.50339054005466e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.50852478284474e-13!GO:0030163;protein catabolic process;1.50852478284474e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.76748483443258e-13!GO:0045271;respiratory chain complex I;2.76748483443258e-13!GO:0005747;mitochondrial respiratory chain complex I;2.76748483443258e-13!GO:0032559;adenyl ribonucleotide binding;3.29404667758663e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.66189805464379e-13!GO:0006323;DNA packaging;5.73672719841858e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.63150144338537e-13!GO:0030554;adenyl nucleotide binding;1.45384064689235e-12!GO:0065004;protein-DNA complex assembly;1.61092871036981e-12!GO:0016604;nuclear body;2.20142105760747e-12!GO:0000074;regulation of progression through cell cycle;3.2882379671858e-12!GO:0016192;vesicle-mediated transport;3.88176991443318e-12!GO:0006732;coenzyme metabolic process;3.9493621819574e-12!GO:0051726;regulation of cell cycle;4.69383073853111e-12!GO:0005793;ER-Golgi intermediate compartment;8.89376607364346e-12!GO:0006333;chromatin assembly or disassembly;1.57477817396745e-11!GO:0043412;biopolymer modification;1.58520922143898e-11!GO:0006446;regulation of translational initiation;2.01378267795834e-11!GO:0000785;chromatin;2.21348612620316e-11!GO:0042623;ATPase activity, coupled;2.30636751829206e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.328741764843e-11!GO:0009259;ribonucleotide metabolic process;2.74120397820453e-11!GO:0016887;ATPase activity;3.61489276996493e-11!GO:0005643;nuclear pore;5.52919221191402e-11!GO:0006163;purine nucleotide metabolic process;5.94418077172842e-11!GO:0004386;helicase activity;6.32376617810901e-11!GO:0005789;endoplasmic reticulum membrane;8.14823788914348e-11!GO:0015630;microtubule cytoskeleton;1.20175887339945e-10!GO:0006913;nucleocytoplasmic transport;1.30051421147702e-10!GO:0009150;purine ribonucleotide metabolic process;2.67008285984556e-10!GO:0006399;tRNA metabolic process;2.70250359160737e-10!GO:0051169;nuclear transport;3.34118040361013e-10!GO:0006164;purine nucleotide biosynthetic process;3.37291805883856e-10!GO:0009055;electron carrier activity;3.45600440111601e-10!GO:0065002;intracellular protein transport across a membrane;3.4737515916941e-10!GO:0006364;rRNA processing;3.59350086592376e-10!GO:0008565;protein transporter activity;4.04739173538057e-10!GO:0016607;nuclear speck;4.16070890032298e-10!GO:0009260;ribonucleotide biosynthetic process;4.5344422202725e-10!GO:0006464;protein modification process;4.95249268309507e-10!GO:0008026;ATP-dependent helicase activity;6.48433844901278e-10!GO:0006334;nucleosome assembly;7.58638092434987e-10!GO:0003712;transcription cofactor activity;7.94219606505389e-10!GO:0016072;rRNA metabolic process;9.32323172649904e-10!GO:0050657;nucleic acid transport;9.82426073305547e-10!GO:0051236;establishment of RNA localization;9.82426073305547e-10!GO:0050658;RNA transport;9.82426073305547e-10!GO:0006403;RNA localization;1.23168958082933e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.27403034262795e-09!GO:0009060;aerobic respiration;1.41970743677522e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.43949727609198e-09!GO:0048523;negative regulation of cellular process;2.32336078848213e-09!GO:0003924;GTPase activity;2.51901343132037e-09!GO:0006461;protein complex assembly;2.51901343132037e-09!GO:0006366;transcription from RNA polymerase II promoter;2.95342867228306e-09!GO:0012501;programmed cell death;3.34128394191184e-09!GO:0046930;pore complex;3.62728705445033e-09!GO:0050794;regulation of cellular process;3.80561989192209e-09!GO:0009141;nucleoside triphosphate metabolic process;4.19099424989862e-09!GO:0031497;chromatin assembly;4.58199209048319e-09!GO:0009199;ribonucleoside triphosphate metabolic process;4.68612680888774e-09!GO:0008639;small protein conjugating enzyme activity;5.07847045881991e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.24216978619534e-09!GO:0006888;ER to Golgi vesicle-mediated transport;6.29067776191954e-09!GO:0045333;cellular respiration;6.61522967067604e-09!GO:0006915;apoptosis;8.27650057482357e-09!GO:0004842;ubiquitin-protein ligase activity;9.0062269271415e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.18590099691321e-09!GO:0009144;purine nucleoside triphosphate metabolic process;9.18590099691321e-09!GO:0030532;small nuclear ribonucleoprotein complex;9.68645082682577e-09!GO:0043687;post-translational protein modification;1.4626228682301e-08!GO:0019787;small conjugating protein ligase activity;1.59612261544188e-08!GO:0043566;structure-specific DNA binding;1.61920090964966e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.6800532051554e-08!GO:0003697;single-stranded DNA binding;1.80233392299533e-08!GO:0017038;protein import;1.95713375957893e-08!GO:0005819;spindle;1.98100439384466e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.20242609244138e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.21758894939797e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.21758894939797e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.21758894939797e-08!GO:0043038;amino acid activation;2.93543696286465e-08!GO:0006418;tRNA aminoacylation for protein translation;2.93543696286465e-08!GO:0043039;tRNA aminoacylation;2.93543696286465e-08!GO:0015986;ATP synthesis coupled proton transport;3.16490668814784e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.16490668814784e-08!GO:0009142;nucleoside triphosphate biosynthetic process;3.43923028405458e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.43923028405458e-08!GO:0006099;tricarboxylic acid cycle;4.20564957300925e-08!GO:0046356;acetyl-CoA catabolic process;4.20564957300925e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.61343201979507e-08!GO:0008219;cell death;5.05838079479104e-08!GO:0016265;death;5.05838079479104e-08!GO:0051028;mRNA transport;5.85928486962441e-08!GO:0005788;endoplasmic reticulum lumen;6.43851749970524e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.85681720966279e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.85681720966279e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.33192419890027e-08!GO:0046034;ATP metabolic process;7.96389189667085e-08!GO:0009056;catabolic process;1.0453924428217e-07!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.16273162230648e-07!GO:0006084;acetyl-CoA metabolic process;1.20015084561715e-07!GO:0019829;cation-transporting ATPase activity;1.38814780527954e-07!GO:0030120;vesicle coat;1.53439098392429e-07!GO:0030662;coated vesicle membrane;1.53439098392429e-07!GO:0016859;cis-trans isomerase activity;1.61531943631635e-07!GO:0009109;coenzyme catabolic process;1.62065505680296e-07!GO:0048519;negative regulation of biological process;1.87307895807607e-07!GO:0016853;isomerase activity;1.94156490314872e-07!GO:0051188;cofactor biosynthetic process;1.94156490314872e-07!GO:0051187;cofactor catabolic process;1.96380390556585e-07!GO:0005813;centrosome;2.09478215147917e-07!GO:0048475;coated membrane;2.20743296165822e-07!GO:0030117;membrane coat;2.20743296165822e-07!GO:0005667;transcription factor complex;2.55915629984426e-07!GO:0016881;acid-amino acid ligase activity;2.62033103565229e-07!GO:0009117;nucleotide metabolic process;2.97352317235216e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.2777887293728e-07!GO:0051246;regulation of protein metabolic process;4.46994122982124e-07!GO:0000775;chromosome, pericentric region;4.66221667861777e-07!GO:0007005;mitochondrion organization and biogenesis;4.88685291210178e-07!GO:0051329;interphase of mitotic cell cycle;5.01560828737586e-07!GO:0005815;microtubule organizing center;5.21459258470591e-07!GO:0006754;ATP biosynthetic process;5.41716892426653e-07!GO:0006753;nucleoside phosphate metabolic process;5.41716892426653e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.44235753586317e-07!GO:0000245;spliceosome assembly;8.49929217407137e-07!GO:0016568;chromatin modification;8.88314884292285e-07!GO:0005768;endosome;9.03320686828465e-07!GO:0044431;Golgi apparatus part;1.00259877178844e-06!GO:0032446;protein modification by small protein conjugation;1.09558146852428e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.2107632363623e-06!GO:0007051;spindle organization and biogenesis;1.30529691721771e-06!GO:0016779;nucleotidyltransferase activity;1.31258407934439e-06!GO:0045259;proton-transporting ATP synthase complex;1.31258407934439e-06!GO:0016740;transferase activity;1.54897932593872e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.98803541406468e-06!GO:0016567;protein ubiquitination;2.02635453089812e-06!GO:0051325;interphase;2.10405424114125e-06!GO:0006613;cotranslational protein targeting to membrane;2.28365133122575e-06!GO:0043623;cellular protein complex assembly;2.29717215313446e-06!GO:0005525;GTP binding;2.33376243461852e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.35094578544613e-06!GO:0031324;negative regulation of cellular metabolic process;2.79905494739386e-06!GO:0050789;regulation of biological process;3.17324616677622e-06!GO:0006261;DNA-dependent DNA replication;3.58258628204939e-06!GO:0000075;cell cycle checkpoint;4.23014839719373e-06!GO:0043069;negative regulation of programmed cell death;4.23014839719373e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.39840105425882e-06!GO:0016787;hydrolase activity;4.4601656713816e-06!GO:0031988;membrane-bound vesicle;4.4601656713816e-06!GO:0006752;group transfer coenzyme metabolic process;4.9339045197263e-06!GO:0016563;transcription activator activity;5.0683361055446e-06!GO:0043067;regulation of programmed cell death;5.21664189381207e-06!GO:0000151;ubiquitin ligase complex;5.32901923284441e-06!GO:0051170;nuclear import;5.94424891259165e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.98710358940243e-06!GO:0009108;coenzyme biosynthetic process;6.55012593290903e-06!GO:0006916;anti-apoptosis;6.67388576413785e-06!GO:0003724;RNA helicase activity;6.97199324221221e-06!GO:0042981;regulation of apoptosis;7.44938252880693e-06!GO:0005762;mitochondrial large ribosomal subunit;7.90173708166084e-06!GO:0000315;organellar large ribosomal subunit;7.90173708166084e-06!GO:0043066;negative regulation of apoptosis;8.73454925606525e-06!GO:0016491;oxidoreductase activity;9.81328941700322e-06!GO:0000786;nucleosome;9.91497883123262e-06!GO:0031252;leading edge;1.07632865739078e-05!GO:0005657;replication fork;1.1088982601993e-05!GO:0005770;late endosome;1.11602178507191e-05!GO:0006606;protein import into nucleus;1.33398748105231e-05!GO:0007010;cytoskeleton organization and biogenesis;1.44625876970235e-05!GO:0004298;threonine endopeptidase activity;1.48519266716415e-05!GO:0008654;phospholipid biosynthetic process;1.55364417426832e-05!GO:0005798;Golgi-associated vesicle;1.59765672841724e-05!GO:0045786;negative regulation of progression through cell cycle;1.6806661366472e-05!GO:0003713;transcription coactivator activity;1.79860689038138e-05!GO:0032561;guanyl ribonucleotide binding;1.79976274488848e-05!GO:0019001;guanyl nucleotide binding;1.79976274488848e-05!GO:0009892;negative regulation of metabolic process;1.90047682413937e-05!GO:0003899;DNA-directed RNA polymerase activity;2.10772282325019e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.24788269709353e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.39159052750568e-05!GO:0043021;ribonucleoprotein binding;2.53811375722286e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.53811375722286e-05!GO:0031982;vesicle;2.6361239626345e-05!GO:0000139;Golgi membrane;2.79340107239012e-05!GO:0031410;cytoplasmic vesicle;2.95193967015863e-05!GO:0008094;DNA-dependent ATPase activity;2.97280445587591e-05!GO:0045454;cell redox homeostasis;3.42129351767072e-05!GO:0030867;rough endoplasmic reticulum membrane;3.76040634990488e-05!GO:0000314;organellar small ribosomal subunit;3.85984461743875e-05!GO:0005763;mitochondrial small ribosomal subunit;3.85984461743875e-05!GO:0019843;rRNA binding;3.88292663469118e-05!GO:0016564;transcription repressor activity;3.89057960565248e-05!GO:0016363;nuclear matrix;3.95663294901003e-05!GO:0019222;regulation of metabolic process;4.46434020361277e-05!GO:0044440;endosomal part;4.95262371307852e-05!GO:0010008;endosome membrane;4.95262371307852e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.23232799585553e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;5.80228291478347e-05!GO:0003714;transcription corepressor activity;6.60082802069745e-05!GO:0016126;sterol biosynthetic process;7.02566966134702e-05!GO:0006612;protein targeting to membrane;7.28418166696798e-05!GO:0051427;hormone receptor binding;7.38219936757561e-05!GO:0000079;regulation of cyclin-dependent protein kinase activity;8.60738761117101e-05!GO:0006302;double-strand break repair;9.29246146315619e-05!GO:0000776;kinetochore;9.72525224650607e-05!GO:0051789;response to protein stimulus;0.00010041896075972!GO:0006986;response to unfolded protein;0.00010041896075972!GO:0006793;phosphorus metabolic process;0.000101386606144882!GO:0006796;phosphate metabolic process;0.000101386606144882!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000102073873276111!GO:0005769;early endosome;0.000105259834871972!GO:0003690;double-stranded DNA binding;0.000107198513073381!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000123185018295833!GO:0016310;phosphorylation;0.00015142172506581!GO:0035257;nuclear hormone receptor binding;0.0001546861816527!GO:0031968;organelle outer membrane;0.000155631904922184!GO:0030133;transport vesicle;0.00017798172532056!GO:0005048;signal sequence binding;0.000179171950852713!GO:0008186;RNA-dependent ATPase activity;0.00019129250357926!GO:0016481;negative regulation of transcription;0.000194225165414448!GO:0006310;DNA recombination;0.000200683102376243!GO:0019867;outer membrane;0.000203430797981783!GO:0006091;generation of precursor metabolites and energy;0.000231014918798654!GO:0008361;regulation of cell size;0.000239785231979929!GO:0005885;Arp2/3 protein complex;0.000252355358868908!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000284060053985749!GO:0033116;ER-Golgi intermediate compartment membrane;0.000285108412961808!GO:0005791;rough endoplasmic reticulum;0.000288959347203542!GO:0030036;actin cytoskeleton organization and biogenesis;0.000308512637819546!GO:0042802;identical protein binding;0.000342720411183111!GO:0051168;nuclear export;0.000347387252002967!GO:0016049;cell growth;0.000357967051519461!GO:0006626;protein targeting to mitochondrion;0.000357967051519461!GO:0008250;oligosaccharyl transferase complex;0.000357967051519461!GO:0009165;nucleotide biosynthetic process;0.000358427078665968!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000368989589372151!GO:0030663;COPI coated vesicle membrane;0.000384621294903123!GO:0030126;COPI vesicle coat;0.000384621294903123!GO:0043681;protein import into mitochondrion;0.000414900555766623!GO:0003729;mRNA binding;0.000430091199460103!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000441115850449578!GO:0007093;mitotic cell cycle checkpoint;0.0004442550818736!GO:0007088;regulation of mitosis;0.000450206607525151!GO:0007052;mitotic spindle organization and biogenesis;0.000450206607525151!GO:0005874;microtubule;0.000460170818993552!GO:0031072;heat shock protein binding;0.000461814719031689!GO:0019899;enzyme binding;0.000461814719031689!GO:0004004;ATP-dependent RNA helicase activity;0.000507732724824796!GO:0004576;oligosaccharyl transferase activity;0.000509556884857492!GO:0003682;chromatin binding;0.000510905770859153!GO:0003684;damaged DNA binding;0.000533156712262823!GO:0044452;nucleolar part;0.000546997085217101!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000568923923895898!GO:0051252;regulation of RNA metabolic process;0.000582677108999421!GO:0006695;cholesterol biosynthetic process;0.000584747326408599!GO:0006383;transcription from RNA polymerase III promoter;0.000616340979346772!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00061691127921499!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000631230817967484!GO:0005905;coated pit;0.000635689423737689!GO:0051052;regulation of DNA metabolic process;0.000654140623851205!GO:0006891;intra-Golgi vesicle-mediated transport;0.000674159486357751!GO:0007059;chromosome segregation;0.000675413291127669!GO:0001558;regulation of cell growth;0.000677867381813228!GO:0018196;peptidyl-asparagine modification;0.0006970843536361!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0006970843536361!GO:0046474;glycerophospholipid biosynthetic process;0.000723031877278064!GO:0048500;signal recognition particle;0.000745052757144774!GO:0000059;protein import into nucleus, docking;0.000751096930283261!GO:0051920;peroxiredoxin activity;0.00077941833872011!GO:0005741;mitochondrial outer membrane;0.000780737142668162!GO:0006414;translational elongation;0.000894864449709144!GO:0005773;vacuole;0.000950119404256247!GO:0030137;COPI-coated vesicle;0.00097013969896849!GO:0000082;G1/S transition of mitotic cell cycle;0.000986714588119892!GO:0003678;DNA helicase activity;0.00105495623461639!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00115769869947272!GO:0008047;enzyme activator activity;0.00119300571159251!GO:0008180;signalosome;0.00126271084856925!GO:0007050;cell cycle arrest;0.00126305070945882!GO:0006352;transcription initiation;0.00130733132703561!GO:0008312;7S RNA binding;0.00133194352960365!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00134156617425121!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00134156617425121!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00134156617425121!GO:0051087;chaperone binding;0.00138634739305857!GO:0008033;tRNA processing;0.00140894102564643!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00144223609802463!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00156868358419437!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00156973699492865!GO:0048471;perinuclear region of cytoplasm;0.00168458028857334!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00175767959535058!GO:0045047;protein targeting to ER;0.00175767959535058!GO:0015631;tubulin binding;0.00181781745124356!GO:0030029;actin filament-based process;0.00193574032067238!GO:0005684;U2-dependent spliceosome;0.001964031145433!GO:0016251;general RNA polymerase II transcription factor activity;0.00209875271502147!GO:0006839;mitochondrial transport;0.00209875271502147!GO:0006402;mRNA catabolic process;0.00211520457647273!GO:0043488;regulation of mRNA stability;0.00220801069114577!GO:0043487;regulation of RNA stability;0.00220801069114577!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00222670129576467!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00230661422658426!GO:0030027;lamellipodium;0.0023827798621037!GO:0005876;spindle microtubule;0.00238718535067974!GO:0008168;methyltransferase activity;0.00238972524630144!GO:0030176;integral to endoplasmic reticulum membrane;0.00238972524630144!GO:0016741;transferase activity, transferring one-carbon groups;0.00239538627718124!GO:0065009;regulation of a molecular function;0.0024716570475369!GO:0030880;RNA polymerase complex;0.0024716570475369!GO:0043284;biopolymer biosynthetic process;0.00255159929253659!GO:0048522;positive regulation of cellular process;0.00255159929253659!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00267009241102878!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00267009241102878!GO:0007006;mitochondrial membrane organization and biogenesis;0.00285077178307222!GO:0000323;lytic vacuole;0.00285081781852762!GO:0005764;lysosome;0.00285081781852762!GO:0030521;androgen receptor signaling pathway;0.00291563852236571!GO:0030134;ER to Golgi transport vesicle;0.00312887693907102!GO:0008610;lipid biosynthetic process;0.00333784357453795!GO:0035258;steroid hormone receptor binding;0.00333784357453795!GO:0009112;nucleobase metabolic process;0.00336473692149262!GO:0003711;transcription elongation regulator activity;0.00336473692149262!GO:0065007;biological regulation;0.00339965666662878!GO:0046489;phosphoinositide biosynthetic process;0.00340679532557512!GO:0031323;regulation of cellular metabolic process;0.0034797863290255!GO:0000910;cytokinesis;0.00354254310743821!GO:0046467;membrane lipid biosynthetic process;0.00392683875171137!GO:0051287;NAD binding;0.00428139022949119!GO:0007017;microtubule-based process;0.00430202368070302!GO:0007243;protein kinase cascade;0.00443735429723783!GO:0006401;RNA catabolic process;0.00455435180315177!GO:0031124;mRNA 3'-end processing;0.0045828885213689!GO:0030658;transport vesicle membrane;0.00461584704286774!GO:0030127;COPII vesicle coat;0.00461584704286774!GO:0012507;ER to Golgi transport vesicle membrane;0.00461584704286774!GO:0046483;heterocycle metabolic process;0.00474749319881853!GO:0045045;secretory pathway;0.00480115037737867!GO:0006950;response to stress;0.00480115037737867!GO:0005096;GTPase activator activity;0.00481320168600323!GO:0030659;cytoplasmic vesicle membrane;0.00502991525718486!GO:0008139;nuclear localization sequence binding;0.00504162116631997!GO:0004527;exonuclease activity;0.00516267409416161!GO:0006289;nucleotide-excision repair;0.00519541716772714!GO:0008092;cytoskeletal protein binding;0.00539250410406151!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00539250410406151!GO:0000428;DNA-directed RNA polymerase complex;0.00539250410406151!GO:0048487;beta-tubulin binding;0.00576657487020987!GO:0015992;proton transport;0.00581898105976885!GO:0006275;regulation of DNA replication;0.00587418088309335!GO:0000049;tRNA binding;0.0059289576619825!GO:0032984;macromolecular complex disassembly;0.00605406002985933!GO:0017166;vinculin binding;0.00611730845280887!GO:0005637;nuclear inner membrane;0.00620277006369136!GO:0008022;protein C-terminus binding;0.00630672124171604!GO:0000922;spindle pole;0.0064825311446802!GO:0001726;ruffle;0.00655429552703143!GO:0016272;prefoldin complex;0.00655429552703143!GO:0005869;dynactin complex;0.0067078684332225!GO:0030118;clathrin coat;0.006727381814684!GO:0006818;hydrogen transport;0.006727381814684!GO:0006220;pyrimidine nucleotide metabolic process;0.006727381814684!GO:0000339;RNA cap binding;0.00680522008459909!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0068658748131552!GO:0015002;heme-copper terminal oxidase activity;0.0068658748131552!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0068658748131552!GO:0004129;cytochrome-c oxidase activity;0.0068658748131552!GO:0045892;negative regulation of transcription, DNA-dependent;0.00688363289627874!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.007194232519019!GO:0015399;primary active transmembrane transporter activity;0.007194232519019!GO:0044262;cellular carbohydrate metabolic process;0.00762378981416763!GO:0006350;transcription;0.00764664588585995!GO:0006595;polyamine metabolic process;0.00767819854823796!GO:0043022;ribosome binding;0.00819864283457559!GO:0003746;translation elongation factor activity;0.008198839492653!GO:0006520;amino acid metabolic process;0.00865334926817583!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00867085359242102!GO:0043624;cellular protein complex disassembly;0.00867085359242102!GO:0032508;DNA duplex unwinding;0.00867085359242102!GO:0032392;DNA geometric change;0.00867085359242102!GO:0051128;regulation of cellular component organization and biogenesis;0.00894630219976024!GO:0005669;transcription factor TFIID complex;0.00922247238296515!GO:0005862;muscle thin filament tropomyosin;0.00925184676856812!GO:0033673;negative regulation of kinase activity;0.00930847977838571!GO:0006469;negative regulation of protein kinase activity;0.00930847977838571!GO:0004003;ATP-dependent DNA helicase activity;0.00938032342100341!GO:0007021;tubulin folding;0.00939955570786728!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00984570380159737!GO:0005832;chaperonin-containing T-complex;0.00985859440996406!GO:0009116;nucleoside metabolic process;0.0100499489287463!GO:0030660;Golgi-associated vesicle membrane;0.0100849504381222!GO:0030132;clathrin coat of coated pit;0.0107317109801312!GO:0051539;4 iron, 4 sulfur cluster binding;0.0107317109801312!GO:0044433;cytoplasmic vesicle part;0.0108114361650568!GO:0006144;purine base metabolic process;0.0113399732486626!GO:0031901;early endosome membrane;0.0113475481239826!GO:0050662;coenzyme binding;0.0116010477515952!GO:0016197;endosome transport;0.0116097644255201!GO:0043241;protein complex disassembly;0.0118623859086963!GO:0006405;RNA export from nucleus;0.0118650745400649!GO:0006268;DNA unwinding during replication;0.0118983980233737!GO:0031902;late endosome membrane;0.0119108648068936!GO:0004177;aminopeptidase activity;0.0119192570651322!GO:0016408;C-acyltransferase activity;0.0121386908144883!GO:0031123;RNA 3'-end processing;0.012406339839163!GO:0051348;negative regulation of transferase activity;0.0124227234373007!GO:0019752;carboxylic acid metabolic process;0.0127552682578572!GO:0032200;telomere organization and biogenesis;0.0128903976624783!GO:0000723;telomere maintenance;0.0128903976624783!GO:0031970;organelle envelope lumen;0.0128922187668651!GO:0006082;organic acid metabolic process;0.0131394709609262!GO:0007264;small GTPase mediated signal transduction;0.0131446198212053!GO:0043596;nuclear replication fork;0.0134004044993373!GO:0003702;RNA polymerase II transcription factor activity;0.0135404357436994!GO:0000209;protein polyubiquitination;0.0139667405562892!GO:0016584;nucleosome positioning;0.0140163982422794!GO:0006740;NADPH regeneration;0.0140163982422794!GO:0006098;pentose-phosphate shunt;0.0140163982422794!GO:0006611;protein export from nucleus;0.0144025958015821!GO:0004518;nuclease activity;0.0147356182837311!GO:0000228;nuclear chromosome;0.0147699992894188!GO:0006509;membrane protein ectodomain proteolysis;0.0148043188870568!GO:0033619;membrane protein proteolysis;0.0148043188870568!GO:0006338;chromatin remodeling;0.0148686826463358!GO:0050681;androgen receptor binding;0.0149888408568353!GO:0005758;mitochondrial intermembrane space;0.01563126452986!GO:0022890;inorganic cation transmembrane transporter activity;0.0159747968459365!GO:0006378;mRNA polyadenylation;0.0162093216570549!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0163966647129774!GO:0009303;rRNA transcription;0.017016277832653!GO:0004674;protein serine/threonine kinase activity;0.0175372476382461!GO:0006497;protein amino acid lipidation;0.0177789799412006!GO:0031625;ubiquitin protein ligase binding;0.0181550515529164!GO:0030496;midbody;0.0189439851060746!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0189439851060746!GO:0012506;vesicle membrane;0.0193584521870822!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0194642932890132!GO:0006376;mRNA splice site selection;0.019484935011399!GO:0000389;nuclear mRNA 3'-splice site recognition;0.019484935011399!GO:0000178;exosome (RNase complex);0.0197539353239328!GO:0030119;AP-type membrane coat adaptor complex;0.0197639156475793!GO:0016407;acetyltransferase activity;0.020441610445562!GO:0030518;steroid hormone receptor signaling pathway;0.020457682783876!GO:0015036;disulfide oxidoreductase activity;0.0210713459827379!GO:0008632;apoptotic program;0.0210765347032049!GO:0042770;DNA damage response, signal transduction;0.0212243037436842!GO:0006284;base-excision repair;0.0216941734789098!GO:0009967;positive regulation of signal transduction;0.0217252349512149!GO:0031577;spindle checkpoint;0.0217252349512149!GO:0030145;manganese ion binding;0.0219048101850696!GO:0007034;vacuolar transport;0.0221928910162926!GO:0006541;glutamine metabolic process;0.0222550671322226!GO:0040008;regulation of growth;0.0223289321751156!GO:0043130;ubiquitin binding;0.0223397779582094!GO:0032182;small conjugating protein binding;0.0223397779582094!GO:0008097;5S rRNA binding;0.0223999153112162!GO:0030032;lamellipodium biogenesis;0.0224712866859566!GO:0045893;positive regulation of transcription, DNA-dependent;0.0227903285379601!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0228134878742825!GO:0000096;sulfur amino acid metabolic process;0.0230697228798825!GO:0051540;metal cluster binding;0.0231633347433839!GO:0051536;iron-sulfur cluster binding;0.0231633347433839!GO:0000792;heterochromatin;0.0232580022289523!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0232643524690588!GO:0010468;regulation of gene expression;0.023383440437467!GO:0042393;histone binding;0.0234428123408838!GO:0031529;ruffle organization and biogenesis;0.0236435341183532!GO:0000725;recombinational repair;0.0238024003026841!GO:0000724;double-strand break repair via homologous recombination;0.0238024003026841!GO:0040029;regulation of gene expression, epigenetic;0.0248997301480403!GO:0006354;RNA elongation;0.0248997301480403!GO:0007569;cell aging;0.0250141125273461!GO:0000726;non-recombinational repair;0.0251925452418461!GO:0007004;telomere maintenance via telomerase;0.0262107836983896!GO:0051101;regulation of DNA binding;0.0264733270399447!GO:0006650;glycerophospholipid metabolic process;0.0267713601432039!GO:0016044;membrane organization and biogenesis;0.0267768427695346!GO:0031570;DNA integrity checkpoint;0.0272371436717349!GO:0031371;ubiquitin conjugating enzyme complex;0.0273014076879457!GO:0022408;negative regulation of cell-cell adhesion;0.0275504928162656!GO:0000781;chromosome, telomeric region;0.0278552157236032!GO:0050790;regulation of catalytic activity;0.0278759036241725!GO:0022406;membrane docking;0.0279113113356694!GO:0048278;vesicle docking;0.0279113113356694!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0280022314513801!GO:0008538;proteasome activator activity;0.0284779989938478!GO:0003756;protein disulfide isomerase activity;0.0286351330050833!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0286351330050833!GO:0009451;RNA modification;0.0287808067245161!GO:0035267;NuA4 histone acetyltransferase complex;0.029145717629076!GO:0005801;cis-Golgi network;0.0295210215651071!GO:0008320;protein transmembrane transporter activity;0.0295439515667127!GO:0001952;regulation of cell-matrix adhesion;0.0297484015268164!GO:0006417;regulation of translation;0.0303395095627503!GO:0006506;GPI anchor biosynthetic process;0.0306713422949413!GO:0004448;isocitrate dehydrogenase activity;0.0307724591810021!GO:0047485;protein N-terminus binding;0.0309162711314499!GO:0000152;nuclear ubiquitin ligase complex;0.0310273788574375!GO:0006007;glucose catabolic process;0.0310873759987069!GO:0000086;G2/M transition of mitotic cell cycle;0.0311429089052208!GO:0006892;post-Golgi vesicle-mediated transport;0.0312706249783875!GO:0042158;lipoprotein biosynthetic process;0.0315182247744515!GO:0006778;porphyrin metabolic process;0.0317050100931928!GO:0033013;tetrapyrrole metabolic process;0.0317050100931928!GO:0051098;regulation of binding;0.0321586046590915!GO:0022884;macromolecule transmembrane transporter activity;0.032293377888007!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.032293377888007!GO:0045792;negative regulation of cell size;0.0322962347814081!GO:0032940;secretion by cell;0.0323178202702282!GO:0030508;thiol-disulfide exchange intermediate activity;0.0324210361032108!GO:0005784;translocon complex;0.0329263950590234!GO:0030131;clathrin adaptor complex;0.0331348797767504!GO:0005586;collagen type III;0.0331348797767504!GO:0032259;methylation;0.0333868364627887!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0335302952644716!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0340434420538037!GO:0009124;nucleoside monophosphate biosynthetic process;0.0355457163462044!GO:0009123;nucleoside monophosphate metabolic process;0.0355457163462044!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0355457163462044!GO:0008408;3'-5' exonuclease activity;0.0361103148822357!GO:0043414;biopolymer methylation;0.0363019624704167!GO:0007346;regulation of progression through mitotic cell cycle;0.0373683144129351!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0375868225759741!GO:0043189;H4/H2A histone acetyltransferase complex;0.0379509643288726!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0381896788430995!GO:0000070;mitotic sister chromatid segregation;0.038222359184148!GO:0000819;sister chromatid segregation;0.0382402274446686!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0384691294527914!GO:0022411;cellular component disassembly;0.0393027256933193!GO:0008243;plasminogen activator activity;0.0393336937645522!GO:0030308;negative regulation of cell growth;0.0393935568776084!GO:0006505;GPI anchor metabolic process;0.0394369635175359!GO:0033559;unsaturated fatty acid metabolic process;0.0395952682558985!GO:0006636;unsaturated fatty acid biosynthetic process;0.0395952682558985!GO:0004532;exoribonuclease activity;0.0397804443986288!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0397804443986288!GO:0022415;viral reproductive process;0.0399036088869166!GO:0003923;GPI-anchor transamidase activity;0.0399036088869166!GO:0016255;attachment of GPI anchor to protein;0.0399036088869166!GO:0042765;GPI-anchor transamidase complex;0.0399036088869166!GO:0006739;NADP metabolic process;0.0399098227017738!GO:0016125;sterol metabolic process;0.0399967806536705!GO:0006904;vesicle docking during exocytosis;0.0400035785208106!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0402395215131013!GO:0045941;positive regulation of transcription;0.0402676989087304!GO:0005092;GDP-dissociation inhibitor activity;0.0407360690839791!GO:0009119;ribonucleoside metabolic process;0.0410932995504279!GO:0043601;nuclear replisome;0.041458571244411!GO:0030894;replisome;0.041458571244411!GO:0030041;actin filament polymerization;0.0421911832661145!GO:0007040;lysosome organization and biogenesis;0.0424534493332446!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.042479664827762!GO:0046128;purine ribonucleoside metabolic process;0.0438811029535618!GO:0042278;purine nucleoside metabolic process;0.0438811029535618!GO:0045936;negative regulation of phosphate metabolic process;0.0439356613981936!GO:0030384;phosphoinositide metabolic process;0.0441648895186575!GO:0008299;isoprenoid biosynthetic process;0.0446840985666966!GO:0017134;fibroblast growth factor binding;0.0446840985666966!GO:0030833;regulation of actin filament polymerization;0.0446960295756567!GO:0006266;DNA ligation;0.0451599888370135!GO:0043433;negative regulation of transcription factor activity;0.0451673415466843!GO:0006400;tRNA modification;0.0454982642471479!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0459749535245787!GO:0033043;regulation of organelle organization and biogenesis;0.0459749535245787!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0461274655801747!GO:0031418;L-ascorbic acid binding;0.0461274655801747!GO:0030125;clathrin vesicle coat;0.0463173527584062!GO:0030665;clathrin coated vesicle membrane;0.0463173527584062!GO:0019206;nucleoside kinase activity;0.0463173527584062!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0463174405945764!GO:0007162;negative regulation of cell adhesion;0.0474105621988152!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0476880393408532!GO:0008234;cysteine-type peptidase activity;0.0477136012904781!GO:0005680;anaphase-promoting complex;0.0477661304913556!GO:0005938;cell cortex;0.0477761809891924!GO:0006779;porphyrin biosynthetic process;0.0483231049708962!GO:0033014;tetrapyrrole biosynthetic process;0.0483231049708962!GO:0043492;ATPase activity, coupled to movement of substances;0.0483654708687603!GO:0042026;protein refolding;0.0483654708687603!GO:0000077;DNA damage checkpoint;0.0483654708687603!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0489471679688944!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0490905554478056!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0490905554478056!GO:0030911;TPR domain binding;0.0491969290052976!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.049241188106198!GO:0007033;vacuole organization and biogenesis;0.049917429327699
 |sample_id=11541
 |sample_note=
@@ Line 76: / Line 100: @@
 |sample_tissue=umbilical vein
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11541-120B2;search_select_hide=table117:FF:11541-120B2
 }}

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FF:11541-120B2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:07, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0