FF:11592-120G8: Difference between revisions

Latest revision as of 18:10, 4 June 2020

Name:	Smooth Muscle Cells - Bronchial, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12348
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lung
dev stage	NA
sex	NA
age	NA
cell type	smooth muscle cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC3405
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004669

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12348		CAGE		DRX008479		DRR009351

Accession ID Hg19

Library id		BAM		CTSS
CNhs12348		DRZ000776		DRZ002161

Accession ID Hg38

Library id		BAM		CTSS
CNhs12348		DRZ012126		DRZ013511

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.117
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.416
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.359
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0106
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0413
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.22
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.359
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0353
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0108
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.552
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.457
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.269
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.155
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.565
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.319
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.155
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.155
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.359
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.155
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.359
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.497
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12348

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0919
MA0003.1	MA0003.1	0.425
MA0004.1	MA0004.1	0.331
MA0006.1	MA0006.1	0.676
MA0007.1	MA0007.1	0.185
MA0009.1	MA0009.1	0.0757
MA0014.1	MA0014.1	0.485
MA0017.1	MA0017.1	0.469
MA0018.2	MA0018.2	3.14925e-6
MA0019.1	MA0019.1	0.565
MA0024.1	MA0024.1	3.0315e-6
MA0025.1	MA0025.1	3.19086e-4
MA0027.1	MA0027.1	0.811
MA0028.1	MA0028.1	2.5951e-5
MA0029.1	MA0029.1	0.613
MA0030.1	MA0030.1	0.56
MA0031.1	MA0031.1	0.875
MA0035.2	MA0035.2	0.225
MA0038.1	MA0038.1	0.0191
MA0039.2	MA0039.2	0.00366
MA0040.1	MA0040.1	0.691
MA0041.1	MA0041.1	0.376
MA0042.1	MA0042.1	0.574
MA0043.1	MA0043.1	6.14439e-4
MA0046.1	MA0046.1	0.814
MA0047.2	MA0047.2	0.848
MA0048.1	MA0048.1	0.288
MA0050.1	MA0050.1	0.0837
MA0051.1	MA0051.1	0.284
MA0052.1	MA0052.1	0.147
MA0055.1	MA0055.1	0.193
MA0057.1	MA0057.1	0.802
MA0058.1	MA0058.1	0.189
MA0059.1	MA0059.1	0.8
MA0060.1	MA0060.1	2.11951e-9
MA0061.1	MA0061.1	0.209
MA0062.2	MA0062.2	4.84364e-14
MA0065.2	MA0065.2	0.584
MA0066.1	MA0066.1	0.804
MA0067.1	MA0067.1	0.0337
MA0068.1	MA0068.1	0.431
MA0069.1	MA0069.1	0.294
MA0070.1	MA0070.1	0.159
MA0071.1	MA0071.1	0.276
MA0072.1	MA0072.1	0.869
MA0073.1	MA0073.1	0.317
MA0074.1	MA0074.1	0.308
MA0076.1	MA0076.1	1.24933e-6
MA0077.1	MA0077.1	0.154
MA0078.1	MA0078.1	0.81
MA0079.2	MA0079.2	0.38
MA0080.2	MA0080.2	2.9034e-9
MA0081.1	MA0081.1	0.00107
MA0083.1	MA0083.1	0.0609
MA0084.1	MA0084.1	0.96
MA0087.1	MA0087.1	0.845
MA0088.1	MA0088.1	0.146
MA0090.1	MA0090.1	0.0284
MA0091.1	MA0091.1	0.00303
MA0092.1	MA0092.1	0.384
MA0093.1	MA0093.1	0.317
MA0099.2	MA0099.2	0.00887
MA0100.1	MA0100.1	0.735
MA0101.1	MA0101.1	0.0151
MA0102.2	MA0102.2	0.468
MA0103.1	MA0103.1	0.00458
MA0104.2	MA0104.2	0.996
MA0105.1	MA0105.1	0.63
MA0106.1	MA0106.1	0.68
MA0107.1	MA0107.1	0.0212
MA0108.2	MA0108.2	0.511
MA0111.1	MA0111.1	0.806
MA0112.2	MA0112.2	0.316
MA0113.1	MA0113.1	0.0208
MA0114.1	MA0114.1	0.61
MA0115.1	MA0115.1	0.625
MA0116.1	MA0116.1	0.722
MA0117.1	MA0117.1	0.142
MA0119.1	MA0119.1	0.0525
MA0122.1	MA0122.1	0.996
MA0124.1	MA0124.1	0.263
MA0125.1	MA0125.1	0.533
MA0131.1	MA0131.1	0.219
MA0135.1	MA0135.1	0.467
MA0136.1	MA0136.1	3.55384e-13
MA0137.2	MA0137.2	0.436
MA0138.2	MA0138.2	0.623
MA0139.1	MA0139.1	0.996
MA0140.1	MA0140.1	0.535
MA0141.1	MA0141.1	0.768
MA0142.1	MA0142.1	0.818
MA0143.1	MA0143.1	0.0586
MA0144.1	MA0144.1	0.0944
MA0145.1	MA0145.1	0.093
MA0146.1	MA0146.1	0.52
MA0147.1	MA0147.1	0.696
MA0148.1	MA0148.1	0.951
MA0149.1	MA0149.1	0.261
MA0150.1	MA0150.1	0.0399
MA0152.1	MA0152.1	0.00605
MA0153.1	MA0153.1	0.112
MA0154.1	MA0154.1	0.829
MA0155.1	MA0155.1	0.561
MA0156.1	MA0156.1	2.75907e-12
MA0157.1	MA0157.1	0.918
MA0159.1	MA0159.1	0.675
MA0160.1	MA0160.1	0.793
MA0162.1	MA0162.1	0.16
MA0163.1	MA0163.1	0.277
MA0164.1	MA0164.1	0.983
MA0258.1	MA0258.1	0.67
MA0259.1	MA0259.1	0.562

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12348

Novel motif	Logo	P-value
1	1	0.646
10	10	0.566
100	100	0.641
101	101	0.803
102	102	0.0402
103	103	0.108
104	104	0.475
105	105	0.936
106	106	0.174
107	107	0.00636
108	108	0.101
109	109	0.572
11	11	0.828
110	110	0.268
111	111	0.724
112	112	0.941
113	113	0.417
114	114	0.693
115	115	0.148
116	116	0.0618
117	117	0.479
118	118	0.402
119	119	0.423
12	12	0.457
120	120	0.11
121	121	0.268
122	122	0.145
123	123	1.08628e-4
124	124	0.856
125	125	0.218
126	126	0.548
127	127	0.847
128	128	0.0687
129	129	0.368
13	13	0.178
130	130	0.707
131	131	0.413
132	132	0.804
133	133	0.148
134	134	0.682
135	135	0.945
136	136	0.944
137	137	0.0318
138	138	0.932
139	139	0.59
14	14	0.229
140	140	0.159
141	141	0.305
142	142	0.856
143	143	0.988
144	144	0.335
145	145	0.805
146	146	0.691
147	147	0.231
148	148	0.541
149	149	0.0754
15	15	0.865
150	150	0.578
151	151	0.876
152	152	0.644
153	153	0.219
154	154	0.279
155	155	0.033
156	156	0.221
157	157	0.0954
158	158	0.191
159	159	0.422
16	16	0.0883
160	160	0.498
161	161	0.619
162	162	0.0962
163	163	0.893
164	164	0.204
165	165	0.872
166	166	0.0518
167	167	0.274
168	168	0.809
169	169	0.149
17	17	0.705
18	18	0.0772
19	19	0.00482
2	2	0.286
20	20	0.423
21	21	0.206
22	22	0.136
23	23	0.0233
24	24	0.396
25	25	0.0989
26	26	0.442
27	27	0.666
28	28	0.119
29	29	0.804
3	3	0.962
30	30	0.415
31	31	0.188
32	32	2.46237e-7
33	33	0.597
34	34	0.409
35	35	0.789
36	36	0.0383
37	37	0.756
38	38	0.426
39	39	0.462
4	4	0.116
40	40	0.0235
41	41	0.193
42	42	0.416
43	43	0.406
44	44	0.295
45	45	0.682
46	46	0.429
47	47	0.424
48	48	0.471
49	49	0.795
5	5	0.873
50	50	0.935
51	51	0.614
52	52	0.419
53	53	0.0214
54	54	0.25
55	55	0.252
56	56	0.349
57	57	0.626
58	58	0.222
59	59	0.19
6	6	0.572
60	60	0.785
61	61	0.459
62	62	0.739
63	63	0.861
64	64	0.458
65	65	0.321
66	66	0.52
67	67	0.788
68	68	0.575
69	69	0.407
7	7	0.196
70	70	0.0623
71	71	0.758
72	72	0.428
73	73	0.802
74	74	0.284
75	75	0.267
76	76	0.71
77	77	0.772
78	78	0.257
79	79	0.135
8	8	0.5
80	80	0.321
81	81	0.291
82	82	0.667
83	83	0.274
84	84	0.184
85	85	0.0213
86	86	0.767
87	87	0.15
88	88	0.289
89	89	0.355
9	9	0.222
90	90	0.789
91	91	0.478
92	92	0.0199
93	93	0.579
94	94	0.176
95	95	0.47
96	96	0.741
97	97	0.313
98	98	0.584
99	99	0.00281

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12348

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000179 human bronchial smooth muscle cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0002598 (bronchial smooth muscle cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002100 (trunk)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0002185 (bronchus)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000179 (human bronchial smooth muscle cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

@@ Line 1: / Line 1: @@
 {{f5samples
-|id=FF:11592-120G8
+|DRA_sample_Accession=CAGE@SAMD00004669
-|name=Smooth Muscle Cells - Bronchial, donor2
+|accession_numbers=CAGE;DRX008479;DRR009351;DRZ000776;DRZ002161;DRZ012126;DRZ013511
-|sample_id=11592
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0002185,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
-|rna_tube_id=120G8
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0002598
-|rna_box=120
-|rna_position=G8
-|sample_cell_lot=N/A
-|sample_cell_catalog=N/A
-|sample_company=Sciencell/3H
-|rna_lot_number=
-|rna_catalog_number=SC3405
-|sample_species=Human (Homo sapiens)
-|sample_strain=
-|sample_dev_stage=
-|sample_tissue=lung
-|sample_donor(cell lot)=
-|sample_sex=
-|sample_age=
-|sample_ethnicity=
-|rna_rin=
-|rna_od260/230=
-|rna_od260/280=
-|sample_cell_type=smooth muscle cell
-|sample_cell_line=
-|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
-|sample_experimental_condition=
-|sample_disease=
-|rna_sample_type=total RNA
-|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
-|rna_weight_ug=10
-|rna_concentration=1
-|sample_note=
-|profile_hcage=CNhs12348,LSID913,release011,COMPLETED
-|profile_cagescan=,,,
-|profile_srnaseq=,,,
-|profile_rnaseq=,,,
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002598
-|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000119,UBERON:0000383,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001004,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001558,UBERON:0002036,UBERON:0002050,UBERON:0002185,UBERON:0002204,UBERON:0002224,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003082,UBERON:0003104,UBERON:0004119,UBERON:0004120,UBERON:0004290,UBERON:0005178,UBERON:0005181,UBERON:0005291,UBERON:0005423,UBERON:0007023,UBERON:0007196,UBERON:0009142
 |ancestors_in_disease_facet=
-|sample_description=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000179
+|comment=
+|created_by=
+|creation_date=
+|data_phase=2
+|datafreeze_phase=2
+|def=
+|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.42!262.75!TCF21;;chr19:46801639..46801699,+!p1@HIF3A!1.79!60.77!HIF3A;;chr14:61116183..61116208,-!p1@SIX1!1.63!152.35!SIX1;;chr17:46671108..46671147,-!p1@HOXB5!1.57!36.37!HOXB5;;chr16:86544113..86544145,+!p1@FOXF1!1.51!38.51!FOXF1;;chr17:59477233..59477263,+!p1@TBX2!1.50!91.15!TBX2;;chr5:92918919..92918942,+!p1@NR2F1!1.45!118.54!NR2F1;;chr11:113930425..113930471,+!p1@ZBTB16!1.40!34.24!ZBTB16;;chr15:57511609..57511651,+!p2@TCF12!1.34!35.09!TCF12;;chr17:46675420..46675465,-!p3@HOXB6!1.33!23.54!HOXB6;;chr11:46299199..46299233,+!p1@CREB3L1!1.32!99.71!CREB3L1;;chr3:12329397..12329433,+!p2@PPARG!1.30!42.79!PPARG;;chr2:19558373..19558392,-!p1@OSR1!1.29!49.64!OSR1;;chr17:46675558..46675577,-!p2@HOXB6!1.28!17.97!HOXB6;;chr8:49833948..49833973,-!p2@SNAI2!1.23!99.71!SNAI2;;chr6:1389789..1389821,+!p1@FOXF2!1.19!20.11!FOXF2;;chr11:46299539..46299620,+!p2@CREB3L1!1.15!22.25!CREB3L1;;chr5:92919100..92919135,+!p3@NR2F1!1.15!15.83!NR2F1;;chr1:170633348..170633399,+!p2@PRRX1!1.14!17.55!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.14!14.55!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.13!34.66!TWIST1;;chr15:42749722..42749739,-!p2@ZFP106!1.13!22.25!ZFP106;;chr17:46655704..46655718,-!p2@HOXB4!1.11!17.97!HOXB4;;chr19:13134772..13134822,+!p2@NFIX!1.11!17.55!NFIX;;chr12:115122318..115122331,-!p2@TBX3!1.10!11.55!TBX3;;chr17:46667628..46667642,-!p2@HOXB3!1.08!11.13!HOXB3;;chr17:59529743..59529798,+!p1@TBX4!1.08!11.13!TBX4;;chr12:66218255..66218304,+!p3@HMGA2!1.07!29.10!HMGA2;;chr15:96873984..96873999,+!p3@NR2F2!1.05!76.60!NR2F2;;chr12:66218598..66218645,+!p2@HMGA2!1.05!47.93!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!1.05!33.38!TWIST2;;chr17:59477275..59477286,+!p3@TBX2!1.05!13.69!TBX2;;chr9:94186101..94186122,-!p1@NFIL3!1.03!137.80!NFIL3;;chr5:92918956..92918969,+!p4@NR2F1!1.03!10.70!NR2F1;;chr17:46667594..46667619,-!p1@HOXB3!1.02!9.41!HOXB3;;chr21:47063625..47063658,+!p1@PCBP3!1.01!41.08!PCBP3;;chr1:170633262..170633285,+!p3@PRRX1!1.01!10.70!PRRX1;;chr8:49833978..49833996,-!p1@SNAI2!1.00!187.44!SNAI2;;chr1:170632959..170632987,+!p4@PRRX1!1.00!9.84!PRRX1;;chr11:113930401..113930422,+!p3@ZBTB16!1.00!8.99!ZBTB16;;chr17:1959369..1959388,+!p2@HIC1!0.99!23.54!HIC1;;chr17:59477197..59477212,+!p2@TBX2!0.99!15.41!TBX2;;chr3:141105705..141105770,+!p4@ZBTB38!0.99!10.70!ZBTB38;;chr15:96874012..96874042,+!p2@NR2F2!0.98!79.17!NR2F2;;chr9:73029219..73029289,-!p2@KLF9!0.97!25.68!KLF9;;chr5:158526917..158526932,-!p1@EBF1!0.97!21.40!EBF1;;chr7:27183263..27183284,-!p2@HOXA5!0.96!8.13!HOXA5;;chr17:59477403..59477414,+!p4@TBX2!0.96!8.13!TBX2;;chrX:106960285..106960299,-!p1@TSC22D3!0.95!217.39!TSC22D3;;chr11:47279248..47279264,+!p3@NR1H3!0.95!8.99!NR1H3;;chr9:16870710..16870763,-!p1@BNC2!0.94!13.69!BNC2;;chrX:107018969..107019024,-!p6@TSC22D3!0.94!10.70!TSC22D3;;chr17:46675469..46675481,-!p4@HOXB6!0.94!7.70!HOXB6;;chr9:128509663..128509715,+!p1@PBX3!0.93!26.53!PBX3;;chr9:16870659..16870675,-!p2@BNC2!0.93!9.41!BNC2;;chr2:239756739..239756755,+!p2@TWIST2!0.91!12.41!TWIST2;;chr20:39317868..39317884,-!p1@MAFB!0.90!85.59!MAFB;;chr16:79634624..79634642,-!p1@MAF!0.90!28.67!MAF;;chr3:12329358..12329393,+!p3@PPARG!0.90!17.97!PPARG;;chr1:158979872..158979898,+!p3@IFI16!0.89!21.82!IFI16;;chr9:128510454..128510469,+!p3@PBX3!0.89!8.99!PBX3;;chr5:92918894..92918912,+!p2@NR2F1!0.87!22.25!NR2F1;;chr15:96876966..96877017,+!p12@NR2F2!0.87!9.41!NR2F2;;chr5:92919068..92919082,+!p5@NR2F1!0.87!7.70!NR2F1;;chr14:61191018..61191048,-!p1@SIX4!0.86!14.12!SIX4;;chr6:45296048..45296082,+!p1@RUNX2!0.86!7.27!RUNX2;;chr20:42543441..42543497,+!p1@TOX2!0.85!29.10!TOX2;;chr9:77112244..77112262,+!p1@RORB!0.85!6.85!RORB;;chr11:46299443..46299459,+!p4@CREB3L1!0.84!5.99!CREB3L1;;chr12:114843940..114843955,-!p2@TBX5!0.84!5.99!TBX5;;chr5:122424955..122424988,+!p2@PRDM6!0.84!5.99!PRDM6;;chr7:27183291..27183324,-!p1@HOXA5!0.84!5.99!HOXA5;;chr2:66662281..66662308,+!p1@MEIS1!0.83!20.97!MEIS1;;chr15:96874927..96874938,+!p8@NR2F2!0.83!12.84!NR2F2;;chr2:5832508..5832524,+!p1@SOX11!0.82!5.56!SOX11;;chr12:115122303..115122314,-!p6@TBX3!0.82!5.56!TBX3;;chr9:73028814..73028895,-!p1@KLF9!0.81!58.63!KLF9;;chr9:94186131..94186174,-!p2@NFIL3!0.81!47.93!NFIL3;;chr3:126076242..126076257,-!p1@KLF15!0.81!6.85!KLF15;;chr10:77161504..77161530,-!p1@ZNF503!0.80!76.17!ZNF503;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.80!58.20!GLIS2;;chr13:41240717..41240735,-!p2@FOXO1!0.80!39.37!FOXO1;;chr11:65687362..65687436,+!p3@DRAP1!0.80!26.10!DRAP1;;chr3:71179746..71179783,-!p7@FOXP1!0.79!18.83!FOXP1;;chr17:46675539..46675551,-!p7@HOXB6!0.79!5.14!HOXB6;;chr12:115121962..115121987,-!p1@TBX3!0.78!45.79!TBX3;;chr5:72744594..72744609,-!p1@FOXD1!0.78!24.82!FOXD1;;chrX:106960180..106960197,-!p2@TSC22D3!0.78!20.97!TSC22D3;;chr19:50432453..50432468,+!p1@ATF5!0.77!303.84!ATF5;;chr3:69788576..69788648,+!p1@MITF!0.77!28.24!MITF;;chr9:94186085..94186096,-!p3@NFIL3!0.77!8.56!NFIL3;;chr2:43453734..43453751,-!p1@ZFP36L2!0.76!554.61!ZFP36L2;;chr17:46670037..4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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002598;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002185;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181
+|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 66: / Line 41: @@
 |fonse_treatment=
 |fonse_treatment_closure=
-|top_motifs=
-|comment=Previously: Smooth Muscle Cells - Bronchial, donor2
-|created_by=
-|creation_date=
-|def=
 |has_quality=
-|is_a=EFO:0002091;;FF:0000002;;FF:0000152;;FF:0000210
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor2.CNhs12348.11592-120G8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor2.CNhs12348.11592-120G8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor2.CNhs12348.11592-120G8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor2.CNhs12348.11592-120G8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Bronchial%252c%2520donor2.CNhs12348.11592-120G8.hg38.nobarcode.ctss.bed.gz
+|id=FF:11592-120G8
+|is_a=EFO:0002091;;FF:0000179
+|is_obsolete=
+|library_id=CNhs12348
+|library_id_phase_based=2:CNhs12348
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11592
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11592
+|name=Smooth Muscle Cells - Bronchial, donor2
 |namespace=
 |part_of=
+|profile_cagescan=,,,
+|profile_hcage=CNhs12348,LSID913,release011,COMPLETED
+|profile_rnaseq=
+|profile_srnaseq=,,,
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+|rna_catalog_number=SC3405
+|rna_concentration=1
+|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
+|rna_lot_number=
+|rna_od260/230=
+|rna_od260/280=
+|rna_position=G8
+|rna_rin=
+|rna_sample_type=total RNA
+|rna_tube_id=120G8
+|rna_weight_ug=10
+|sample_age=
+|sample_category=primary cells
+|sample_cell_catalog=N/A
+|sample_cell_line=
+|sample_cell_lot=N/A
+|sample_cell_type=smooth muscle cell
+|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
+|sample_company=Sciencell/3H
+|sample_description=
+|sample_dev_stage=
+|sample_disease=
+|sample_donor(cell lot)=
+|sample_ethnicity=
+|sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.41195920305913e-224!GO:0005737;cytoplasm;3.2255769297361e-187!GO:0043231;intracellular membrane-bound organelle;1.55746760265176e-172!GO:0043226;organelle;1.55746760265176e-172!GO:0043227;membrane-bound organelle;2.83123831794766e-172!GO:0043229;intracellular organelle;3.09395194601082e-172!GO:0044444;cytoplasmic part;2.01289632253476e-131!GO:0044422;organelle part;6.30205490675548e-112!GO:0044446;intracellular organelle part;1.32258030542192e-110!GO:0044238;primary metabolic process;1.3116087428137e-88!GO:0044237;cellular metabolic process;2.25993607576549e-88!GO:0032991;macromolecular complex;1.68971895620581e-79!GO:0043170;macromolecule metabolic process;1.11801173618716e-77!GO:0030529;ribonucleoprotein complex;1.75365873628224e-75!GO:0005515;protein binding;1.59501942703438e-74!GO:0043233;organelle lumen;1.90107349666981e-66!GO:0031974;membrane-enclosed lumen;1.90107349666981e-66!GO:0005739;mitochondrion;7.57350877336289e-65!GO:0005634;nucleus;1.47056255122698e-61!GO:0003723;RNA binding;1.65702363430831e-61!GO:0044428;nuclear part;6.52784392327495e-59!GO:0019538;protein metabolic process;1.45607298226228e-49!GO:0031090;organelle membrane;1.00433296698838e-48!GO:0005840;ribosome;4.71638303346868e-46!GO:0044260;cellular macromolecule metabolic process;1.21731818357078e-44!GO:0006412;translation;1.37502249365662e-44!GO:0006396;RNA processing;3.12216999450016e-43!GO:0044267;cellular protein metabolic process;5.16951871693791e-43!GO:0016043;cellular component organization and biogenesis;2.83917688658452e-42!GO:0010467;gene expression;3.52054061861009e-42!GO:0044429;mitochondrial part;3.8418688882286e-42!GO:0015031;protein transport;2.03539769398341e-41!GO:0009058;biosynthetic process;1.13502886867361e-40!GO:0043283;biopolymer metabolic process;1.3845978662712e-40!GO:0033036;macromolecule localization;1.53718680251273e-40!GO:0003735;structural constituent of ribosome;1.30500196895874e-39!GO:0043234;protein complex;5.31430079746408e-38!GO:0045184;establishment of protein localization;7.20645867527963e-38!GO:0031981;nuclear lumen;8.83189795828786e-38!GO:0005829;cytosol;1.68651787609828e-37!GO:0008104;protein localization;2.70730313041756e-37!GO:0044249;cellular biosynthetic process;3.89306512693228e-37!GO:0031967;organelle envelope;3.5852991711617e-36!GO:0009059;macromolecule biosynthetic process;5.72569256843999e-36!GO:0031975;envelope;8.07467448960142e-36!GO:0016071;mRNA metabolic process;1.96163655992242e-35!GO:0033279;ribosomal subunit;1.14563284790981e-34!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.54899749318063e-34!GO:0008380;RNA splicing;3.09662568623678e-31!GO:0046907;intracellular transport;1.01626485188267e-30!GO:0006397;mRNA processing;1.40420179865972e-29!GO:0006886;intracellular protein transport;5.92439525878262e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.7586670397725e-27!GO:0005740;mitochondrial envelope;6.01067090554488e-27!GO:0065003;macromolecular complex assembly;1.58763957759838e-26!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.00186912114459e-25!GO:0031966;mitochondrial membrane;1.99790693483987e-25!GO:0019866;organelle inner membrane;7.53462589213014e-25!GO:0005654;nucleoplasm;9.82308907748525e-24!GO:0022607;cellular component assembly;2.04115645912444e-23!GO:0005743;mitochondrial inner membrane;3.60445052396527e-23!GO:0005681;spliceosome;1.48460689398693e-21!GO:0006996;organelle organization and biogenesis;2.87757325155407e-21!GO:0003676;nucleic acid binding;8.30667519068107e-21!GO:0006119;oxidative phosphorylation;1.5623814118711e-20!GO:0044451;nucleoplasm part;1.81454338924479e-20!GO:0006457;protein folding;2.6244415383173e-20!GO:0044445;cytosolic part;3.47815970816798e-20!GO:0008134;transcription factor binding;4.71628313612402e-20!GO:0016070;RNA metabolic process;1.08743785391306e-19!GO:0012505;endomembrane system;3.6999103438472e-19!GO:0043228;non-membrane-bound organelle;4.18888986766433e-19!GO:0043232;intracellular non-membrane-bound organelle;4.18888986766433e-19!GO:0031980;mitochondrial lumen;6.98053847394069e-19!GO:0005759;mitochondrial matrix;6.98053847394069e-19!GO:0005783;endoplasmic reticulum;7.52588356536707e-19!GO:0048770;pigment granule;9.09324363362408e-19!GO:0042470;melanosome;9.09324363362408e-19!GO:0051649;establishment of cellular localization;3.42826803335472e-18!GO:0015934;large ribosomal subunit;4.48998083018016e-18!GO:0044455;mitochondrial membrane part;4.88296907869094e-18!GO:0051641;cellular localization;4.88296907869094e-18!GO:0015935;small ribosomal subunit;1.44896805575223e-17!GO:0000166;nucleotide binding;2.31084162714259e-17!GO:0022618;protein-RNA complex assembly;1.16460651011084e-16!GO:0016462;pyrophosphatase activity;1.93258771423712e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.04688590234696e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;2.99139632628181e-16!GO:0017111;nucleoside-triphosphatase activity;3.67505756098503e-16!GO:0051186;cofactor metabolic process;3.68361505653465e-16!GO:0016874;ligase activity;4.61223167743591e-16!GO:0005746;mitochondrial respiratory chain;5.02155959006298e-16!GO:0044432;endoplasmic reticulum part;8.94241211062539e-16!GO:0005730;nucleolus;1.43684496728686e-15!GO:0005794;Golgi apparatus;3.48289479360741e-15!GO:0006512;ubiquitin cycle;4.10414719032032e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.9374616555943e-15!GO:0043285;biopolymer catabolic process;1.55177173888454e-14!GO:0006605;protein targeting;1.58558128856441e-14!GO:0008135;translation factor activity, nucleic acid binding;2.13780920992573e-14!GO:0044265;cellular macromolecule catabolic process;2.21924303478635e-14!GO:0006259;DNA metabolic process;4.81217942610373e-14!GO:0050136;NADH dehydrogenase (quinone) activity;5.21172876394497e-14!GO:0003954;NADH dehydrogenase activity;5.21172876394497e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.21172876394497e-14!GO:0051082;unfolded protein binding;6.18999694032823e-14!GO:0000502;proteasome complex (sensu Eukaryota);6.2508407568591e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.56608376227118e-13!GO:0044248;cellular catabolic process;1.70751130355058e-13!GO:0006511;ubiquitin-dependent protein catabolic process;3.19662051275191e-13!GO:0019941;modification-dependent protein catabolic process;3.31808591791511e-13!GO:0043632;modification-dependent macromolecule catabolic process;3.31808591791511e-13!GO:0048193;Golgi vesicle transport;3.9656209868333e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.07901622361039e-13!GO:0044257;cellular protein catabolic process;4.1603301577207e-13!GO:0003712;transcription cofactor activity;5.81691793414049e-13!GO:0005761;mitochondrial ribosome;5.86836612575626e-13!GO:0000313;organellar ribosome;5.86836612575626e-13!GO:0009057;macromolecule catabolic process;6.41801613928001e-13!GO:0043412;biopolymer modification;8.58405025673324e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.08537495876309e-12!GO:0006732;coenzyme metabolic process;1.89904640851933e-12!GO:0012501;programmed cell death;2.82192479989594e-12!GO:0042775;organelle ATP synthesis coupled electron transport;2.8597986060269e-12!GO:0042773;ATP synthesis coupled electron transport;2.8597986060269e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.92723725191516e-12!GO:0045271;respiratory chain complex I;2.92723725191516e-12!GO:0005747;mitochondrial respiratory chain complex I;2.92723725191516e-12!GO:0016192;vesicle-mediated transport;3.0851434137509e-12!GO:0030163;protein catabolic process;5.30412928062318e-12!GO:0048523;negative regulation of cellular process;5.58107486722169e-12!GO:0006915;apoptosis;6.69559019413442e-12!GO:0032553;ribonucleotide binding;7.39994569597899e-12!GO:0032555;purine ribonucleotide binding;7.39994569597899e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.79925326500245e-12!GO:0017076;purine nucleotide binding;9.96036042132365e-12!GO:0008219;cell death;1.09132947853698e-11!GO:0016265;death;1.09132947853698e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.47287581891435e-11!GO:0003743;translation initiation factor activity;2.20884840779755e-11!GO:0006464;protein modification process;3.4476484729798e-11!GO:0042254;ribosome biogenesis and assembly;5.56889774498913e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;5.61712634565347e-11!GO:0000375;RNA splicing, via transesterification reactions;5.61712634565347e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.61712634565347e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.05374555094055e-11!GO:0006413;translational initiation;7.7578590039478e-11!GO:0006913;nucleocytoplasmic transport;1.00017648204269e-10!GO:0005789;endoplasmic reticulum membrane;1.00017648204269e-10!GO:0005793;ER-Golgi intermediate compartment;1.13607514825566e-10!GO:0006366;transcription from RNA polymerase II promoter;1.26511574864672e-10!GO:0008565;protein transporter activity;1.49769037352222e-10!GO:0016604;nuclear body;1.9311927843484e-10!GO:0051169;nuclear transport;2.02888899227995e-10!GO:0050794;regulation of cellular process;2.0522656755607e-10!GO:0006446;regulation of translational initiation;2.19081050299459e-10!GO:0005635;nuclear envelope;4.10966086535682e-10!GO:0031965;nuclear membrane;5.6294249728739e-10!GO:0048519;negative regulation of biological process;5.78821368612108e-10!GO:0043687;post-translational protein modification;1.28570531289247e-09!GO:0009055;electron carrier activity;1.95741427650607e-09!GO:0005524;ATP binding;2.34959971006388e-09!GO:0032559;adenyl ribonucleotide binding;4.20487704911202e-09!GO:0005768;endosome;6.05134843410779e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.48858233009801e-09!GO:0016491;oxidoreductase activity;7.29319048214642e-09!GO:0030554;adenyl nucleotide binding;7.29319048214642e-09!GO:0009259;ribonucleotide metabolic process;8.96255207160266e-09!GO:0017038;protein import;9.38043100904139e-09!GO:0007049;cell cycle;9.38043100904139e-09!GO:0006461;protein complex assembly;1.07430629141164e-08!GO:0009150;purine ribonucleotide metabolic process;1.13576680634774e-08!GO:0006163;purine nucleotide metabolic process;1.53919940344937e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.54885119401548e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.54885119401548e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.54885119401548e-08!GO:0016607;nuclear speck;1.67873156732224e-08!GO:0016564;transcription repressor activity;2.37845248219797e-08!GO:0006399;tRNA metabolic process;2.58531973765208e-08!GO:0009056;catabolic process;2.68427680643914e-08!GO:0016887;ATPase activity;2.68427680643914e-08!GO:0042623;ATPase activity, coupled;2.83530660728706e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.58695586843359e-08!GO:0044453;nuclear membrane part;3.79300428210197e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.88425127785584e-08!GO:0009152;purine ribonucleotide biosynthetic process;4.30075211583622e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.32825277720575e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.32825277720575e-08!GO:0008639;small protein conjugating enzyme activity;4.74118490967538e-08!GO:0043038;amino acid activation;4.81163904891251e-08!GO:0006418;tRNA aminoacylation for protein translation;4.81163904891251e-08!GO:0043039;tRNA aminoacylation;4.81163904891251e-08!GO:0009060;aerobic respiration;4.94233794015965e-08!GO:0050789;regulation of biological process;5.25842100011371e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.99549426653411e-08!GO:0006164;purine nucleotide biosynthetic process;6.02627131963924e-08!GO:0045333;cellular respiration;7.52639871875997e-08!GO:0009260;ribonucleotide biosynthetic process;7.78921412896449e-08!GO:0009141;nucleoside triphosphate metabolic process;7.78921412896449e-08!GO:0004842;ubiquitin-protein ligase activity;8.07738580281823e-08!GO:0019787;small conjugating protein ligase activity;9.30696022411315e-08!GO:0015986;ATP synthesis coupled proton transport;1.21168787713022e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.21168787713022e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.29945102203987e-07!GO:0051188;cofactor biosynthetic process;1.3161365993977e-07!GO:0045786;negative regulation of progression through cell cycle;1.35723656503433e-07!GO:0042981;regulation of apoptosis;1.42128410474676e-07!GO:0043067;regulation of programmed cell death;1.46690535722596e-07!GO:0051246;regulation of protein metabolic process;1.7149579478617e-07!GO:0019829;cation-transporting ATPase activity;1.78625848666032e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.83307082842041e-07!GO:0003924;GTPase activity;1.91708583076694e-07!GO:0005788;endoplasmic reticulum lumen;1.95696564374625e-07!GO:0003714;transcription corepressor activity;2.00251109660411e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.04766126586987e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.04766126586987e-07!GO:0031324;negative regulation of cellular metabolic process;2.06382878062221e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;2.38128964494284e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.44642253410242e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.44642253410242e-07!GO:0046034;ATP metabolic process;2.49378506389906e-07!GO:0051187;cofactor catabolic process;3.02216109834731e-07!GO:0006364;rRNA processing;3.35854330284255e-07!GO:0006974;response to DNA damage stimulus;3.6450779668615e-07!GO:0008026;ATP-dependent helicase activity;4.15776485504011e-07!GO:0048475;coated membrane;6.77352446307702e-07!GO:0030117;membrane coat;6.77352446307702e-07!GO:0006888;ER to Golgi vesicle-mediated transport;6.83242096840622e-07!GO:0004386;helicase activity;6.86207252600638e-07!GO:0030532;small nuclear ribonucleoprotein complex;6.88183091495301e-07!GO:0016881;acid-amino acid ligase activity;7.53226749188789e-07!GO:0009109;coenzyme catabolic process;7.82765758223164e-07!GO:0006323;DNA packaging;7.86388270668484e-07!GO:0016072;rRNA metabolic process;8.19363336950788e-07!GO:0051726;regulation of cell cycle;8.46136266860224e-07!GO:0000074;regulation of progression through cell cycle;8.90936909976074e-07!GO:0065002;intracellular protein transport across a membrane;9.35383550767313e-07!GO:0006099;tricarboxylic acid cycle;9.37682830273733e-07!GO:0046356;acetyl-CoA catabolic process;9.37682830273733e-07!GO:0031988;membrane-bound vesicle;9.37682830273733e-07!GO:0005643;nuclear pore;9.60749557825039e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.03853652652741e-06!GO:0030120;vesicle coat;1.11015912724574e-06!GO:0030662;coated vesicle membrane;1.11015912724574e-06!GO:0044431;Golgi apparatus part;1.16993059395804e-06!GO:0006091;generation of precursor metabolites and energy;1.23675505279494e-06!GO:0006754;ATP biosynthetic process;1.27995788100629e-06!GO:0006753;nucleoside phosphate metabolic process;1.27995788100629e-06!GO:0005667;transcription factor complex;1.29026417344936e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.43297755874788e-06!GO:0043069;negative regulation of programmed cell death;1.52551089718259e-06!GO:0019222;regulation of metabolic process;1.7801646567099e-06!GO:0044440;endosomal part;1.78388893354492e-06!GO:0010008;endosome membrane;1.78388893354492e-06!GO:0003713;transcription coactivator activity;1.90626279289876e-06!GO:0043066;negative regulation of apoptosis;1.91671632702657e-06!GO:0005770;late endosome;2.04639821871744e-06!GO:0046930;pore complex;2.1016889627038e-06!GO:0008361;regulation of cell size;2.1016889627038e-06!GO:0031252;leading edge;2.25009100435446e-06!GO:0051170;nuclear import;2.39704650517699e-06!GO:0006084;acetyl-CoA metabolic process;2.54107358787325e-06!GO:0043566;structure-specific DNA binding;2.68904766161195e-06!GO:0006916;anti-apoptosis;2.72671983269173e-06!GO:0009892;negative regulation of metabolic process;2.78697396184522e-06!GO:0006606;protein import into nucleus;3.20321814521058e-06!GO:0016563;transcription activator activity;3.20777359606394e-06!GO:0006403;RNA localization;3.29136647987269e-06!GO:0009117;nucleotide metabolic process;3.31155691369451e-06!GO:0050657;nucleic acid transport;3.31155691369451e-06!GO:0051236;establishment of RNA localization;3.31155691369451e-06!GO:0050658;RNA transport;3.31155691369451e-06!GO:0016049;cell growth;3.37750462858598e-06!GO:0005773;vacuole;3.60994378279994e-06!GO:0022402;cell cycle process;4.04572969070032e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.15259161634247e-06!GO:0016481;negative regulation of transcription;4.91405130535811e-06!GO:0051276;chromosome organization and biogenesis;5.95147332909616e-06!GO:0009108;coenzyme biosynthetic process;6.9562688012636e-06!GO:0045259;proton-transporting ATP synthase complex;7.06048582437787e-06!GO:0031982;vesicle;7.17347186999643e-06!GO:0032446;protein modification by small protein conjugation;7.18530268712008e-06!GO:0007005;mitochondrion organization and biogenesis;7.52076248611904e-06!GO:0003697;single-stranded DNA binding;7.58406696935005e-06!GO:0006752;group transfer coenzyme metabolic process;7.59593622758833e-06!GO:0005839;proteasome core complex (sensu Eukaryota);7.82608625624925e-06!GO:0015980;energy derivation by oxidation of organic compounds;8.39098344189183e-06!GO:0031410;cytoplasmic vesicle;8.92584741905641e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.09113793044201e-06!GO:0006793;phosphorus metabolic process;9.41101868349311e-06!GO:0006796;phosphate metabolic process;9.41101868349311e-06!GO:0000151;ubiquitin ligase complex;9.9324603381122e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.01048578291924e-05!GO:0016567;protein ubiquitination;1.14101588278407e-05!GO:0016310;phosphorylation;1.19965793879052e-05!GO:0000245;spliceosome assembly;1.22132579131788e-05!GO:0009719;response to endogenous stimulus;1.32743662290359e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.45965124419537e-05!GO:0001558;regulation of cell growth;1.72352091051979e-05!GO:0016853;isomerase activity;1.84807945036438e-05!GO:0016568;chromatin modification;2.09401895748311e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.44030818085788e-05!GO:0016740;transferase activity;2.4696614642299e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.65582323442163e-05!GO:0000323;lytic vacuole;3.46621498289207e-05!GO:0005764;lysosome;3.46621498289207e-05!GO:0008654;phospholipid biosynthetic process;4.03009971097537e-05!GO:0005525;GTP binding;4.0738676392616e-05!GO:0016859;cis-trans isomerase activity;4.20557947318498e-05!GO:0019899;enzyme binding;4.66031005998965e-05!GO:0065004;protein-DNA complex assembly;5.25130411731794e-05!GO:0004298;threonine endopeptidase activity;5.34148924516807e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.38462311958493e-05!GO:0051789;response to protein stimulus;5.58640566903039e-05!GO:0006986;response to unfolded protein;5.58640566903039e-05!GO:0065007;biological regulation;5.6332343820629e-05!GO:0006281;DNA repair;5.73141824682653e-05!GO:0051028;mRNA transport;5.92802402067241e-05!GO:0000139;Golgi membrane;6.3463099679912e-05!GO:0005762;mitochondrial large ribosomal subunit;6.46121859963719e-05!GO:0000315;organellar large ribosomal subunit;6.46121859963719e-05!GO:0016787;hydrolase activity;7.07095445209732e-05!GO:0030133;transport vesicle;7.62225640853459e-05!GO:0006613;cotranslational protein targeting to membrane;8.24541331996537e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;8.74296511958362e-05!GO:0030036;actin cytoskeleton organization and biogenesis;9.19116584247724e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.79189420759934e-05!GO:0005798;Golgi-associated vesicle;0.000107408441455458!GO:0048522;positive regulation of cellular process;0.000119000442865921!GO:0003724;RNA helicase activity;0.000124088604189698!GO:0007050;cell cycle arrest;0.000133310700526311!GO:0019752;carboxylic acid metabolic process;0.000135735807089466!GO:0006082;organic acid metabolic process;0.000143226386120629!GO:0005791;rough endoplasmic reticulum;0.000155552180733974!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000157467310319606!GO:0030867;rough endoplasmic reticulum membrane;0.000167324031115162!GO:0032561;guanyl ribonucleotide binding;0.000175175497813913!GO:0019001;guanyl nucleotide binding;0.000175175497813913!GO:0004177;aminopeptidase activity;0.000176449261315588!GO:0005769;early endosome;0.000186029459950831!GO:0006333;chromatin assembly or disassembly;0.000190126424168141!GO:0045454;cell redox homeostasis;0.000195547024159029!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000211097817769481!GO:0051427;hormone receptor binding;0.000223231501197585!GO:0005905;coated pit;0.000248970887136712!GO:0031323;regulation of cellular metabolic process;0.00025694197398751!GO:0000314;organellar small ribosomal subunit;0.000260878907858285!GO:0005763;mitochondrial small ribosomal subunit;0.000260878907858285!GO:0045892;negative regulation of transcription, DNA-dependent;0.000323229465061873!GO:0031968;organelle outer membrane;0.00035073838730051!GO:0019867;outer membrane;0.000366115064276514!GO:0016126;sterol biosynthetic process;0.000366582541822106!GO:0044262;cellular carbohydrate metabolic process;0.000376719824468287!GO:0005741;mitochondrial outer membrane;0.000401686865166762!GO:0006260;DNA replication;0.000420415160186623!GO:0043021;ribonucleoprotein binding;0.000430357971204195!GO:0035257;nuclear hormone receptor binding;0.000449410159943437!GO:0007243;protein kinase cascade;0.000461039717495359!GO:0051287;NAD binding;0.000477481501375525!GO:0040008;regulation of growth;0.000488958647939924!GO:0043623;cellular protein complex assembly;0.000493702055253146!GO:0006612;protein targeting to membrane;0.000543745563786985!GO:0005048;signal sequence binding;0.000556486470286014!GO:0008610;lipid biosynthetic process;0.000563572701387365!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00065051434374295!GO:0015399;primary active transmembrane transporter activity;0.00065051434374295!GO:0006402;mRNA catabolic process;0.000655264950462081!GO:0005885;Arp2/3 protein complex;0.000681677985187085!GO:0030029;actin filament-based process;0.000779567767495017!GO:0000785;chromatin;0.000791109553324929!GO:0003729;mRNA binding;0.000796611799064904!GO:0033116;ER-Golgi intermediate compartment membrane;0.000805675027938195!GO:0019843;rRNA binding;0.000858920930582706!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000878911494154439!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000906965557681772!GO:0006979;response to oxidative stress;0.000911656483752861!GO:0008250;oligosaccharyl transferase complex;0.000925009633191466!GO:0004576;oligosaccharyl transferase activity;0.000979366642933268!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00098230206034765!GO:0045893;positive regulation of transcription, DNA-dependent;0.00101296736168275!GO:0006350;transcription;0.00111188820863384!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00116354379437502!GO:0022890;inorganic cation transmembrane transporter activity;0.00120483516660421!GO:0051920;peroxiredoxin activity;0.00120971946136611!GO:0003690;double-stranded DNA binding;0.00124380300032149!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00125147416815876!GO:0016044;membrane organization and biogenesis;0.00128750632686996!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00129415283867977!GO:0046474;glycerophospholipid biosynthetic process;0.00146029037740858!GO:0031072;heat shock protein binding;0.00148650106275569!GO:0030027;lamellipodium;0.00150116754456041!GO:0008286;insulin receptor signaling pathway;0.00150220743230152!GO:0045941;positive regulation of transcription;0.00150220743230152!GO:0030663;COPI coated vesicle membrane;0.00158216747977093!GO:0030126;COPI vesicle coat;0.00158216747977093!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00158216747977093!GO:0010468;regulation of gene expression;0.00158216747977093!GO:0000278;mitotic cell cycle;0.00158216747977093!GO:0051128;regulation of cellular component organization and biogenesis;0.00158302011030568!GO:0051168;nuclear export;0.00160573987527269!GO:0009165;nucleotide biosynthetic process;0.00162025828152357!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00178651640122707!GO:0016197;endosome transport;0.0017914527679723!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00186356180580119!GO:0048468;cell development;0.00186356180580119!GO:0008186;RNA-dependent ATPase activity;0.00193913845971252!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00197024755262317!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00197399194385644!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00197399194385644!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00197399194385644!GO:0048471;perinuclear region of cytoplasm;0.00206645843586581!GO:0006520;amino acid metabolic process;0.00215756808489668!GO:0006414;translational elongation;0.00227531345745685!GO:0031902;late endosome membrane;0.00229840397260683!GO:0043284;biopolymer biosynthetic process;0.00243577993727096!GO:0043681;protein import into mitochondrion;0.00244731701296826!GO:0043488;regulation of mRNA stability;0.00249415762241799!GO:0043487;regulation of RNA stability;0.00249415762241799!GO:0006891;intra-Golgi vesicle-mediated transport;0.00275497806636798!GO:0042802;identical protein binding;0.00277803739512203!GO:0005813;centrosome;0.00281518440055572!GO:0048518;positive regulation of biological process;0.0031705921891569!GO:0018196;peptidyl-asparagine modification;0.00317127816353275!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00317127816353275!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00317127816353275!GO:0015002;heme-copper terminal oxidase activity;0.00317127816353275!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00317127816353275!GO:0004129;cytochrome-c oxidase activity;0.00317127816353275!GO:0006695;cholesterol biosynthetic process;0.00318834696713136!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00331319668898606!GO:0051252;regulation of RNA metabolic process;0.00332726733032969!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00335988965610275!GO:0030132;clathrin coat of coated pit;0.00350625511663876!GO:0005694;chromosome;0.00352052284507083!GO:0043492;ATPase activity, coupled to movement of substances;0.00352082572351381!GO:0006509;membrane protein ectodomain proteolysis;0.00358853557262619!GO:0033619;membrane protein proteolysis;0.00358853557262619!GO:0008139;nuclear localization sequence binding;0.0036121705949006!GO:0005581;collagen;0.0036121705949006!GO:0016779;nucleotidyltransferase activity;0.00366183199778347!GO:0030137;COPI-coated vesicle;0.00375431658497609!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00412211991680723!GO:0046483;heterocycle metabolic process;0.00450432675176679!GO:0017166;vinculin binding;0.00452835650364882!GO:0008092;cytoskeletal protein binding;0.00456698409900008!GO:0003899;DNA-directed RNA polymerase activity;0.00461675799369001!GO:0033673;negative regulation of kinase activity;0.00476046814571504!GO:0006469;negative regulation of protein kinase activity;0.00476046814571504!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00488786465196165!GO:0004004;ATP-dependent RNA helicase activity;0.0050123646373346!GO:0015630;microtubule cytoskeleton;0.00501287774572831!GO:0015992;proton transport;0.00507326701816936!GO:0046467;membrane lipid biosynthetic process;0.00510145332764981!GO:0001726;ruffle;0.00516337347207804!GO:0006626;protein targeting to mitochondrion;0.00522960275738816!GO:0006818;hydrogen transport;0.00546318175095514!GO:0030145;manganese ion binding;0.00567743380449152!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00569393757565014!GO:0035258;steroid hormone receptor binding;0.00573604834330864!GO:0000049;tRNA binding;0.00582584735486861!GO:0005774;vacuolar membrane;0.00584258109477993!GO:0004860;protein kinase inhibitor activity;0.00600138376560003!GO:0005815;microtubule organizing center;0.00611278795298373!GO:0000059;protein import into nucleus, docking;0.00613820673555326!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00655905883767768!GO:0051087;chaperone binding;0.00700057913761069!GO:0031901;early endosome membrane;0.007142180331674!GO:0030118;clathrin coat;0.00741427833029621!GO:0051348;negative regulation of transferase activity;0.00752660731891877!GO:0006401;RNA catabolic process;0.00762919541625055!GO:0030176;integral to endoplasmic reticulum membrane;0.00777323197719203!GO:0006984;ER-nuclear signaling pathway;0.00780962323646453!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00780962323646453!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00780962323646453!GO:0003702;RNA polymerase II transcription factor activity;0.00781801080251404!GO:0030880;RNA polymerase complex;0.00798111427558131!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00814822170580007!GO:0048500;signal recognition particle;0.00819740383884943!GO:0016363;nuclear matrix;0.00831327108881041!GO:0051101;regulation of DNA binding;0.00831327108881041!GO:0031497;chromatin assembly;0.00838584127426092!GO:0048487;beta-tubulin binding;0.00845732376981896!GO:0006740;NADPH regeneration;0.00851457739715403!GO:0006098;pentose-phosphate shunt;0.00851457739715403!GO:0006334;nucleosome assembly;0.00876670471099101!GO:0046489;phosphoinositide biosynthetic process;0.00912076975708061!GO:0044452;nucleolar part;0.00937333888193143!GO:0050662;coenzyme binding;0.00983589652751072!GO:0006383;transcription from RNA polymerase III promoter;0.0100724473990947!GO:0065009;regulation of a molecular function;0.0102287760642502!GO:0043433;negative regulation of transcription factor activity;0.0105192850397934!GO:0045792;negative regulation of cell size;0.0105357116882811!GO:0051329;interphase of mitotic cell cycle;0.0106530033083168!GO:0006778;porphyrin metabolic process;0.0108435054277811!GO:0033013;tetrapyrrole metabolic process;0.0108435054277811!GO:0030503;regulation of cell redox homeostasis;0.0109611402530082!GO:0031625;ubiquitin protein ligase binding;0.0110349428759429!GO:0046426;negative regulation of JAK-STAT cascade;0.0112473981203156!GO:0007006;mitochondrial membrane organization and biogenesis;0.0113004239519231!GO:0031124;mRNA 3'-end processing;0.0117665837907226!GO:0030134;ER to Golgi transport vesicle;0.011900843070185!GO:0030518;steroid hormone receptor signaling pathway;0.0119179327039911!GO:0030521;androgen receptor signaling pathway;0.0123318418008966!GO:0030308;negative regulation of cell growth;0.0123321816590207!GO:0006595;polyamine metabolic process;0.0123566333493053!GO:0043065;positive regulation of apoptosis;0.0123566333493053!GO:0007040;lysosome organization and biogenesis;0.0123712094505573!GO:0008629;induction of apoptosis by intracellular signals;0.0123982843394027!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0124924255106636!GO:0033043;regulation of organelle organization and biogenesis;0.0124924255106636!GO:0030658;transport vesicle membrane;0.0131504328817817!GO:0043068;positive regulation of programmed cell death;0.0131867922844994!GO:0044427;chromosomal part;0.0132558897380326!GO:0006892;post-Golgi vesicle-mediated transport;0.0133879277269823!GO:0030119;AP-type membrane coat adaptor complex;0.0135161072158279!GO:0044437;vacuolar part;0.0135449212769554!GO:0040029;regulation of gene expression, epigenetic;0.0136787468576529!GO:0008652;amino acid biosynthetic process;0.0138544201336519!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0142935084554775!GO:0031529;ruffle organization and biogenesis;0.0142935628038958!GO:0006352;transcription initiation;0.0144582623823138!GO:0016408;C-acyltransferase activity;0.0144727202696144!GO:0006839;mitochondrial transport;0.0144923181958622!GO:0005637;nuclear inner membrane;0.0148784096042481!GO:0005765;lysosomal membrane;0.0151876149067107!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.015456024277108!GO:0006650;glycerophospholipid metabolic process;0.0157356655783569!GO:0005862;muscle thin filament tropomyosin;0.0157356655783569!GO:0003711;transcription elongation regulator activity;0.0157356655783569!GO:0030127;COPII vesicle coat;0.0162250253152407!GO:0012507;ER to Golgi transport vesicle membrane;0.0162250253152407!GO:0005869;dynactin complex;0.0162892369254114!GO:0009967;positive regulation of signal transduction;0.0162892369254114!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0167716400837307!GO:0000428;DNA-directed RNA polymerase complex;0.0167716400837307!GO:0004674;protein serine/threonine kinase activity;0.0169694214848068!GO:0000096;sulfur amino acid metabolic process;0.0173681809868045!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0175149550211925!GO:0016125;sterol metabolic process;0.0175149550211925!GO:0008154;actin polymerization and/or depolymerization;0.0175579782788702!GO:0007010;cytoskeleton organization and biogenesis;0.0175791580977456!GO:0008632;apoptotic program;0.018169260314844!GO:0033559;unsaturated fatty acid metabolic process;0.0186587477366049!GO:0006636;unsaturated fatty acid biosynthetic process;0.0186587477366049!GO:0030659;cytoplasmic vesicle membrane;0.0191592908667395!GO:0035035;histone acetyltransferase binding;0.0196033755550016!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0200181311815718!GO:0045047;protein targeting to ER;0.0200181311815718!GO:0009081;branched chain family amino acid metabolic process;0.0201235699788425!GO:0006351;transcription, DNA-dependent;0.0201556387517176!GO:0032774;RNA biosynthetic process;0.0201556387517176!GO:0045926;negative regulation of growth;0.0202118443828505!GO:0006118;electron transport;0.0202340587718269!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0203832476358896!GO:0000339;RNA cap binding;0.0203832476358896!GO:0050811;GABA receptor binding;0.0206988837820252!GO:0000209;protein polyubiquitination;0.0209995730957304!GO:0016272;prefoldin complex;0.021026094200859!GO:0006376;mRNA splice site selection;0.0212033392488171!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0212033392488171!GO:0009308;amine metabolic process;0.0212339410826614!GO:0007264;small GTPase mediated signal transduction;0.0212461910154478!GO:0006607;NLS-bearing substrate import into nucleus;0.0213828869595904!GO:0042168;heme metabolic process;0.0216956605060394!GO:0005684;U2-dependent spliceosome;0.0217891248579613!GO:0006739;NADP metabolic process;0.0218395038136972!GO:0006807;nitrogen compound metabolic process;0.0219244340531498!GO:0008312;7S RNA binding;0.0224402417026079!GO:0006289;nucleotide-excision repair;0.0224402417026079!GO:0030131;clathrin adaptor complex;0.0224402417026079!GO:0007034;vacuolar transport;0.0232151923546107!GO:0043022;ribosome binding;0.0232151923546107!GO:0006635;fatty acid beta-oxidation;0.0239243658727973!GO:0044255;cellular lipid metabolic process;0.0240505989797256!GO:0006338;chromatin remodeling;0.0240505989797256!GO:0031272;regulation of pseudopodium formation;0.0240505989797256!GO:0031269;pseudopodium formation;0.0240505989797256!GO:0031344;regulation of cell projection organization and biogenesis;0.0240505989797256!GO:0031268;pseudopodium organization and biogenesis;0.0240505989797256!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0240505989797256!GO:0031274;positive regulation of pseudopodium formation;0.0240505989797256!GO:0045449;regulation of transcription;0.024140420486523!GO:0006897;endocytosis;0.0241943928083001!GO:0010324;membrane invagination;0.0241943928083001!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0242433947164764!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0242433947164764!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0242433947164764!GO:0044433;cytoplasmic vesicle part;0.0243737182318129!GO:0007033;vacuole organization and biogenesis;0.0244272525927953!GO:0051325;interphase;0.0248175729354073!GO:0048037;cofactor binding;0.0251355586318289!GO:0005583;fibrillar collagen;0.0254900417710173!GO:0051059;NF-kappaB binding;0.025623009206721!GO:0008033;tRNA processing;0.025623009206721!GO:0005159;insulin-like growth factor receptor binding;0.025623009206721!GO:0019210;kinase inhibitor activity;0.0258312381994617!GO:0005669;transcription factor TFIID complex;0.0259972045675707!GO:0051539;4 iron, 4 sulfur cluster binding;0.0260198681688744!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0260540137134722!GO:0030100;regulation of endocytosis;0.026076136177634!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0261625439984404!GO:0016251;general RNA polymerase II transcription factor activity;0.0266326476589537!GO:0007021;tubulin folding;0.0267392202382444!GO:0005832;chaperonin-containing T-complex;0.0276384279781068!GO:0030032;lamellipodium biogenesis;0.0283497530625945!GO:0030660;Golgi-associated vesicle membrane;0.028528182645246!GO:0006611;protein export from nucleus;0.028820596271549!GO:0008168;methyltransferase activity;0.0292379353020883!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0292809964458213!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0292809964458213!GO:0046813;virion attachment, binding of host cell surface receptor;0.0292809964458213!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0292809964458213!GO:0051271;negative regulation of cell motility;0.0294839389020755!GO:0045936;negative regulation of phosphate metabolic process;0.0294839389020755!GO:0003746;translation elongation factor activity;0.0297624974258281!GO:0030031;cell projection biogenesis;0.0298034911411683!GO:0042158;lipoprotein biosynthetic process;0.0299095373237078!GO:0006779;porphyrin biosynthetic process;0.0305281024417252!GO:0033014;tetrapyrrole biosynthetic process;0.0305281024417252!GO:0004563;beta-N-acetylhexosaminidase activity;0.0307796139840393!GO:0016741;transferase activity, transferring one-carbon groups;0.0307796139840393!GO:0016584;nucleosome positioning;0.0310106755607643!GO:0002102;podosome;0.0310106755607643!GO:0051098;regulation of binding;0.0310886288293496!GO:0050681;androgen receptor binding;0.0311020959509834!GO:0007004;telomere maintenance via telomerase;0.0312862325105019!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0324128773543773!GO:0006417;regulation of translation;0.0326221752292377!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0327746768170745!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0328069548808902!GO:0006790;sulfur metabolic process;0.0328805217977546!GO:0006066;alcohol metabolic process;0.0328805217977546!GO:0008147;structural constituent of bone;0.0328805217977546!GO:0000082;G1/S transition of mitotic cell cycle;0.0331638232115665!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.033431676313145!GO:0032984;macromolecular complex disassembly;0.0337166654171497!GO:0030833;regulation of actin filament polymerization;0.0338277208337107!GO:0030508;thiol-disulfide exchange intermediate activity;0.034117040009169!GO:0006519;amino acid and derivative metabolic process;0.0341932289479478!GO:0012506;vesicle membrane;0.0349601822427224!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0363286485956653!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0364804597879588!GO:0009112;nucleobase metabolic process;0.0366713795545609!GO:0001872;zymosan binding;0.0367017733228522!GO:0001878;response to yeast;0.0367017733228522!GO:0030041;actin filament polymerization;0.0371734379209597!GO:0008180;signalosome;0.0374440129461314!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0375022455560863!GO:0016407;acetyltransferase activity;0.0377237272510924!GO:0031123;RNA 3'-end processing;0.0381037011612324!GO:0006749;glutathione metabolic process;0.0381561419816719!GO:0022408;negative regulation of cell-cell adhesion;0.0383372756525159!GO:0006405;RNA export from nucleus;0.0385355549664392!GO:0008637;apoptotic mitochondrial changes;0.0385355549664392!GO:0031371;ubiquitin conjugating enzyme complex;0.0386311034797623!GO:0000902;cell morphogenesis;0.0387706329163552!GO:0032989;cellular structure morphogenesis;0.0387706329163552!GO:0030522;intracellular receptor-mediated signaling pathway;0.0393323476722539!GO:0043615;astrocyte cell migration;0.0393323476722539!GO:0016860;intramolecular oxidoreductase activity;0.0405503253185473!GO:0007569;cell aging;0.0406164425886767!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0409037430781161!GO:0006497;protein amino acid lipidation;0.0412346519624646!GO:0045045;secretory pathway;0.0421068465985048!GO:0030911;TPR domain binding;0.0428683775648346!GO:0046519;sphingoid metabolic process;0.0443767585814957!GO:0007167;enzyme linked receptor protein signaling pathway;0.0450227527082346!GO:0008287;protein serine/threonine phosphatase complex;0.0451873164030629!GO:0030384;phosphoinositide metabolic process;0.0460350098877186!GO:0007041;lysosomal transport;0.0460996963217546!GO:0046822;regulation of nucleocytoplasmic transport;0.0468947803363663!GO:0000287;magnesium ion binding;0.047192314052121!GO:0006672;ceramide metabolic process;0.0478640256370594!GO:0006917;induction of apoptosis;0.0479223132863844!GO:0008320;protein transmembrane transporter activity;0.0479223132863844!GO:0030125;clathrin vesicle coat;0.0479223132863844!GO:0030665;clathrin coated vesicle membrane;0.0479223132863844!GO:0003678;DNA helicase activity;0.0479388309485599!GO:0006950;response to stress;0.0482474668261584!GO:0009303;rRNA transcription;0.0494089447169148!GO:0004228;gelatinase A activity;0.0498884914892192!GO:0001955;blood vessel maturation;0.0498884914892192
+|sample_id=11592
+|sample_note=
+|sample_sex=
+|sample_species=Human (Homo sapiens)
+|sample_strain=
+|sample_tissue=lung
+|top_motifs=GZF1:2.21197814115;ZNF238:1.62188894313;TFAP4:1.44052493399;EN1,2:1.40077843482;AIRE:1.34989737571;FOXD3:1.34814192483;HOX{A6,A7,B6,B7}:1.31318910393;RXR{A,B,G}:1.2325599794;GFI1B:1.18123302003;MYBL2:1.15863630467;TEF:1.14172726566;bHLH_family:1.128365355;PAX5:1.11520105489;HOX{A5,B5}:1.10468791194;GATA4:1.08960733919;NKX2-2,8:1.05473393256;NFIX:1.05303688907;EBF1:1.04920705143;NKX2-1,4:1.03470973168;GLI1..3:1.02969545827;CDX1,2,4:1.01202246084;KLF4:0.981893429466;DBP:0.97921161847;NFATC1..3:0.976880250909;UFEwm:0.947960195871;ALX4:0.89977236346;ESR1:0.894074680495;PATZ1:0.885822942189;TLX1..3_NFIC{dimer}:0.865271861095;NR3C1:0.861995357449;NKX6-1,2:0.859213559361;GTF2I:0.803127112971;FOXO1,3,4:0.762181931362;TAL1_TCF{3,4,12}:0.750410652317;HOX{A4,D4}:0.729017387666;EVI1:0.726029384634;NKX3-1:0.703064161764;SRF:0.689752349438;NR1H4:0.678853311379;FOXM1:0.67769742585;SPZ1:0.660696573254;MAZ:0.651118268623;GTF2A1,2:0.619393724211;STAT2,4,6:0.603734785497;STAT5{A,B}:0.594569487961;TEAD1:0.571184814789;ZNF384:0.55540461078;SREBF1,2:0.548176168122;LHX3,4:0.539029801927;MYFfamily:0.534957508256;SOX17:0.527917139001;NHLH1,2:0.524137205846;ZIC1..3:0.494616237397;HAND1,2:0.492511933019;FOXP3:0.492260543129;ZNF148:0.485974087931;HLF:0.468187078112;NANOG{mouse}:0.45735397701;HNF4A_NR2F1,2:0.450744674032;MZF1:0.449210789572;ARID5B:0.429733784822;AHR_ARNT_ARNT2:0.39340147462;PAX6:0.382492362034;POU3F1..4:0.375288880766;TP53:0.368852860208;ATF6:0.35601312703;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.350943418795;RBPJ:0.336620286968;ONECUT1,2:0.332014472416;VSX1,2:0.331976073078;HIC1:0.328164197844;ZBTB6:0.322796217873;EGR1..3:0.320195646931;MED-1{core}:0.310329749002;CEBPA,B_DDIT3:0.309047893062;HMGA1,2:0.304060262616;RREB1:0.302570057541;PRRX1,2:0.293614912227;TFCP2:0.291260520531;ALX1:0.290020422821;DMAP1_NCOR{1,2}_SMARC:0.2871809855;MTE{core}:0.271070531927;CDC5L:0.260069165948;XBP1:0.254118869138;AR:0.238455268263;RORA:0.229635854396;GCM1,2:0.223134091078;TFAP2{A,C}:0.217152458323;POU6F1:0.21348432246;HSF1,2:0.20682221185;PRDM1:0.197455762955;TLX2:0.188883754113;PBX1:0.159986480743;SOX5:0.120982518614;TFAP2B:0.108199182566;MTF1:0.104206829983;NFE2L2:0.101779852935;ZBTB16:0.0814669567751;ZFP161:0.0772625388247;BPTF:0.0719975710646;IRF1,2:0.07009794458;RFX2..5_RFXANK_RFXAP:0.062988890342;FOXL1:0.0402035296384;ZNF423:0.0369196130483;HNF1A:0.0319773673601;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0300093725616;ADNP_IRX_SIX_ZHX:0.0116549144419;CUX2:0.0109436616582;HIF1A:-0.00915077464957;TBX4,5:-0.0179678751338;FOX{D1,D2}:-0.0222650953706;NKX2-3_NKX2-5:-0.0229774903031;PAX8:-0.0443262485534;T:-0.045701283917;PAX1,9:-0.0545405851249;PDX1:-0.057307910281;SP1:-0.0615539073301;HES1:-0.0636691292097;PAX4:-0.0650580482779;BREu{core}:-0.0793350298958;YY1:-0.0893117617363;STAT1,3:-0.0936904375936;FOXA2:-0.101596143658;CRX:-0.11187915377;FOXQ1:-0.11783311083;IKZF1:-0.140301771638;TBP:-0.143306036219;SMAD1..7,9:-0.14951713267;FOSL2:-0.1498422539;EP300:-0.17353348358;NFE2:-0.179098208413;RXRA_VDR{dimer}:-0.185282788319;MEF2{A,B,C,D}:-0.186130477305;JUN:-0.197886327292;RUNX1..3:-0.198562774301;POU5F1:-0.206368158359;XCPE1{core}:-0.213156309651;FOS_FOS{B,L1}_JUN{B,D}:-0.216669380624;TOPORS:-0.221571406418;BACH2:-0.229199810958;NFE2L1:-0.230820056041;TFDP1:-0.238911055678;NKX3-2:-0.244337667711;TGIF1:-0.249335690806;RFX1:-0.271334901139;IRF7:-0.282975636041;MAFB:-0.309342716386;NFKB1_REL_RELA:-0.336110597862;HOXA9_MEIS1:-0.340581112802;NR5A1,2:-0.34235384489;LEF1_TCF7_TCF7L1,2:-0.381369471182;REST:-0.382667637588;ATF2:-0.384542072144;HMX1:-0.423513768981;ZNF143:-0.432019538603;NRF1:-0.453949357153;ATF4:-0.478634046422;FOX{F1,F2,J1}:-0.486986426835;MYB:-0.502032058874;SPI1:-0.517237450613;NFIL3:-0.525576137075;HBP1_HMGB_SSRP1_UBTF:-0.539728177546;NANOG:-0.539846452767;PAX3,7:-0.541627940983;LMO2:-0.542898450635;ATF5_CREB3:-0.545097546874;GFI1:-0.551239803429;PAX2:-0.554972582618;NR6A1:-0.579319990972;ESRRA:-0.583091702985;CREB1:-0.590779856787;GATA6:-0.62821615936;ETS1,2:-0.629748232459;SOX2:-0.72898933133;SPIB:-0.744162974754;IKZF2:-0.767403250151;ELF1,2,4:-0.782914214004;ELK1,4_GABP{A,B1}:-0.806394817849;POU2F1..3:-0.841187847833;OCT4_SOX2{dimer}:-0.882615264239;FOXN1:-0.884470199315;SNAI1..3:-0.885877133158;E2F1..5:-0.925914172846;POU1F1:-0.953822137185;ZEB1:-0.969855101795;MYOD1:-1.00897609268;FOXP1:-1.02250324954;SOX{8,9,10}:-1.10735365048;NFY{A,B,C}:-1.22535482893;PITX1..3:-1.31380019058;FOX{I1,J2}:-1.59993546557;PPARG:-2.28972683593
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11592-120G8;search_select_hide=table117:FF:11592-120G8
 }}

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FF:11592-120G8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:10, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0