FF:11601-120H8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004955 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004955 | ||
|accession_numbers=CAGE;DRX008302;DRR009174;DRZ000599;DRZ001984;DRZ011949;DRZ013334 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037119;DRR041485;DRZ007127 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0001007,UBERON:0000055,UBERON:0001281,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0002368,UBERON:0000353,UBERON:0003497,UBERON:0003909,UBERON:0005177,UBERON:0002365,UBERON:0007500,UBERON:0001981,UBERON:0005172,UBERON:0006925,UBERON:0002049,UBERON:0002530,UBERON:0003835,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0005173,UBERON:0004535,UBERON:0002417,UBERON:0000949,UBERON:0001280,UBERON:0004647,UBERON:0002330,UBERON:0004537,UBERON:0000916,UBERON:0002423,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000181,CL:0000417,CL:0000668,CL:0000215,CL:0000412,CL:0000255,CL:0000115,CL:0000182,CL:0002262,CL:1000398 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000076 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor2.CNhs12092.11601-120H8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor2.CNhs12092.11601-120H8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor2.CNhs12092.11601-120H8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor2.CNhs12092.11601-120H8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor2.CNhs12092.11601-120H8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11601-120H8 | |id=FF:11601-120H8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000076;;FF:0000210 | ||
|is_obsolete= | |||
|library_id=CNhs12092 | |||
|library_id_phase_based=2:CNhs12092 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11601 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.AGTTCC.11601 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11601 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.AGTTCC.11601 | |||
|name=Hepatic Sinusoidal Endothelial Cells, donor2 | |name=Hepatic Sinusoidal Endothelial Cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12092,LSID839,release011,COMPLETED | |profile_hcage=CNhs12092,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10008,,, | |profile_srnaseq=SRhi10008,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.103286393583344,0.169469313468178,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227325515428431,0,0,0,0.190324262888429,0,0.618650800442403,0,0,0.770789158311378,0,0,0,0,0,0,0,0,0,0,0,0,-0.0431246780186392,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.0609988300615958,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0288670319189471,0,0,0,0,0,0.0139414864905489,0.417479955453205,0,0,0,-0.0584468268118252,0.198892517120489,0,0,0,0,0.282613174539152,0.15169074034633,0,0,0,0,0,0,0.580335882294449,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0,0.0211576327606583,0,0,0,0,0,0 | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC5005 | |rna_catalog_number=SC5005 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=120H8 | |rna_tube_id=120H8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10008.AGTTCC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.3879867659851e-247!GO:0005737;cytoplasm;1.18435950854799e-168!GO:0043226;organelle;7.86033350842121e-131!GO:0043229;intracellular organelle;9.41406513114132e-131!GO:0043231;intracellular membrane-bound organelle;3.91533334680662e-123!GO:0043227;membrane-bound organelle;6.27293185232964e-123!GO:0044444;cytoplasmic part;5.64157056095295e-120!GO:0044422;organelle part;9.18645010022002e-113!GO:0044446;intracellular organelle part;1.47330472030644e-111!GO:0005515;protein binding;7.22764800315448e-83!GO:0032991;macromolecular complex;3.73201310408954e-71!GO:0005739;mitochondrion;2.73936785587606e-60!GO:0030529;ribonucleoprotein complex;3.79213205969148e-60!GO:0044237;cellular metabolic process;2.67801889694649e-54!GO:0044238;primary metabolic process;5.46680993147189e-54!GO:0043233;organelle lumen;1.90469795211177e-49!GO:0031974;membrane-enclosed lumen;1.90469795211177e-49!GO:0043170;macromolecule metabolic process;1.01978832558848e-46!GO:0031090;organelle membrane;2.41132984185508e-46!GO:0005840;ribosome;1.54889820009386e-44!GO:0019538;protein metabolic process;8.2767851145345e-44!GO:0016043;cellular component organization and biogenesis;9.68671686270467e-41!GO:0044428;nuclear part;1.81277869344232e-40!GO:0044429;mitochondrial part;2.44078536724535e-40!GO:0003735;structural constituent of ribosome;5.99907273838838e-40!GO:0003723;RNA binding;1.51866575872849e-39!GO:0009058;biosynthetic process;1.0724286792644e-38!GO:0006412;translation;2.86144071178555e-38!GO:0044260;cellular macromolecule metabolic process;2.99436105803093e-38!GO:0044267;cellular protein metabolic process;7.42990767870548e-38!GO:0043234;protein complex;1.63750371513757e-36!GO:0044249;cellular biosynthetic process;9.7774838947702e-36!GO:0033279;ribosomal subunit;7.7208128439795e-35!GO:0031967;organelle envelope;4.61438133524573e-34!GO:0031975;envelope;9.35838185929887e-34!GO:0009059;macromolecule biosynthetic process;1.0927823724879e-33!GO:0005634;nucleus;4.83480536357752e-33!GO:0005829;cytosol;1.98101997408083e-31!GO:0005740;mitochondrial envelope;4.2569699625356e-29!GO:0043228;non-membrane-bound organelle;2.2798521706384e-28!GO:0043232;intracellular non-membrane-bound organelle;2.2798521706384e-28!GO:0006996;organelle organization and biogenesis;5.74478532450969e-28!GO:0015031;protein transport;2.58955477151652e-27!GO:0031966;mitochondrial membrane;5.68861807067611e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.14446137386126e-26!GO:0033036;macromolecule localization;3.10746499757279e-26!GO:0031981;nuclear lumen;3.55046481314259e-26!GO:0006396;RNA processing;3.26414824929671e-25!GO:0008104;protein localization;7.10242097927422e-25!GO:0045184;establishment of protein localization;1.08294622199092e-24!GO:0019866;organelle inner membrane;1.388640476775e-24!GO:0046907;intracellular transport;1.25862186649083e-23!GO:0065003;macromolecular complex assembly;2.14292063005281e-23!GO:0005743;mitochondrial inner membrane;3.72110228518942e-23!GO:0022607;cellular component assembly;1.09300165020061e-21!GO:0044445;cytosolic part;5.62287908016471e-21!GO:0016071;mRNA metabolic process;1.6757849877408e-20!GO:0043283;biopolymer metabolic process;8.95286426336718e-20!GO:0005783;endoplasmic reticulum;2.04609352880196e-19!GO:0015934;large ribosomal subunit;2.65188451680485e-19!GO:0044455;mitochondrial membrane part;2.80666091887126e-19!GO:0006886;intracellular protein transport;3.03943967420478e-19!GO:0012505;endomembrane system;1.59808825330591e-18!GO:0008380;RNA splicing;2.16725263995815e-18!GO:0006119;oxidative phosphorylation;2.37112582879351e-18!GO:0006259;DNA metabolic process;3.79584406514123e-18!GO:0006397;mRNA processing;1.61277207200163e-17!GO:0015935;small ribosomal subunit;1.51826212452395e-16!GO:0044432;endoplasmic reticulum part;2.09992603623623e-16!GO:0000166;nucleotide binding;4.53100820805019e-16!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.02566197435561e-15!GO:0005794;Golgi apparatus;1.53616743863605e-15!GO:0005746;mitochondrial respiratory chain;2.06696219627566e-15!GO:0005654;nucleoplasm;2.57888479566062e-15!GO:0048770;pigment granule;3.48840946846232e-15!GO:0042470;melanosome;3.48840946846232e-15!GO:0010467;gene expression;9.84569968846383e-15!GO:0007049;cell cycle;1.47016686967239e-14!GO:0006457;protein folding;2.87628864865727e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.11780446326866e-14!GO:0031980;mitochondrial lumen;3.80464242325282e-14!GO:0005759;mitochondrial matrix;3.80464242325282e-14!GO:0051649;establishment of cellular localization;7.88447559043527e-14!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.66614365146021e-14!GO:0051641;cellular localization;9.64735549623952e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.18322985422436e-13!GO:0003954;NADH dehydrogenase activity;1.18322985422436e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.18322985422436e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.34276839939978e-13!GO:0005681;spliceosome;2.26687118537982e-13!GO:0044451;nucleoplasm part;3.3801478914209e-13!GO:0012501;programmed cell death;5.4886157906514e-13!GO:0043412;biopolymer modification;7.61355201162127e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.6414707948735e-13!GO:0008134;transcription factor binding;8.90568651599203e-13!GO:0006915;apoptosis;9.28031155238075e-13!GO:0051186;cofactor metabolic process;1.23763435911635e-12!GO:0032553;ribonucleotide binding;2.58647211811683e-12!GO:0032555;purine ribonucleotide binding;2.58647211811683e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.76462369816261e-12!GO:0016462;pyrophosphatase activity;3.00950965546454e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;3.07751532364287e-12!GO:0022402;cell cycle process;4.34796473057193e-12!GO:0017111;nucleoside-triphosphatase activity;4.76068581733588e-12!GO:0006464;protein modification process;4.77769237656607e-12!GO:0042775;organelle ATP synthesis coupled electron transport;6.16678524917926e-12!GO:0042773;ATP synthesis coupled electron transport;6.16678524917926e-12!GO:0017076;purine nucleotide binding;6.42076111965095e-12!GO:0030964;NADH dehydrogenase complex (quinone);7.25864513592735e-12!GO:0045271;respiratory chain complex I;7.25864513592735e-12!GO:0005747;mitochondrial respiratory chain complex I;7.25864513592735e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.17799099733807e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.31668830188544e-11!GO:0048523;negative regulation of cellular process;2.43421716194982e-11!GO:0000278;mitotic cell cycle;2.69718978342435e-11!GO:0008219;cell death;2.75568294287777e-11!GO:0016265;death;2.75568294287777e-11!GO:0005789;endoplasmic reticulum membrane;3.64655516556231e-11!GO:0005730;nucleolus;4.62640064879877e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.56602843773298e-11!GO:0005761;mitochondrial ribosome;5.8923745301165e-11!GO:0000313;organellar ribosome;5.8923745301165e-11!GO:0016874;ligase activity;7.66813461321114e-11!GO:0051082;unfolded protein binding;3.14524696804221e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;3.63870851885913e-10!GO:0016192;vesicle-mediated transport;3.88330866359187e-10!GO:0048519;negative regulation of biological process;3.98373373729041e-10!GO:0000502;proteasome complex (sensu Eukaryota);7.40376276010821e-10!GO:0043687;post-translational protein modification;7.83412633885272e-10!GO:0006605;protein targeting;8.72734262846941e-10!GO:0005793;ER-Golgi intermediate compartment;9.50339736507484e-10!GO:0044265;cellular macromolecule catabolic process;1.40966684329028e-09!GO:0009055;electron carrier activity;1.62659521737493e-09!GO:0006732;coenzyme metabolic process;1.66337929124507e-09!GO:0006323;DNA packaging;1.8031145694868e-09!GO:0032559;adenyl ribonucleotide binding;1.970380895276e-09!GO:0051276;chromosome organization and biogenesis;2.11156756602131e-09!GO:0009057;macromolecule catabolic process;2.39819225926585e-09!GO:0005524;ATP binding;2.39819225926585e-09!GO:0006512;ubiquitin cycle;3.00566993104616e-09!GO:0022618;protein-RNA complex assembly;4.75936966590792e-09!GO:0051726;regulation of cell cycle;5.2295943547368e-09!GO:0030554;adenyl nucleotide binding;5.96137897813519e-09!GO:0006366;transcription from RNA polymerase II promoter;5.98536849495152e-09!GO:0043285;biopolymer catabolic process;7.53318069948763e-09!GO:0048193;Golgi vesicle transport;1.01424120917666e-08!GO:0000074;regulation of progression through cell cycle;1.06942566990146e-08!GO:0003712;transcription cofactor activity;1.21157552387907e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;1.21157552387907e-08!GO:0000375;RNA splicing, via transesterification reactions;1.21157552387907e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.21157552387907e-08!GO:0044248;cellular catabolic process;1.39596434938449e-08!GO:0006333;chromatin assembly or disassembly;1.66704752900686e-08!GO:0042981;regulation of apoptosis;3.97784056744968e-08!GO:0043067;regulation of programmed cell death;4.13786449013206e-08!GO:0006334;nucleosome assembly;5.40704839271023e-08!GO:0006793;phosphorus metabolic process;6.36547097881448e-08!GO:0006796;phosphate metabolic process;6.36547097881448e-08!GO:0006163;purine nucleotide metabolic process;6.56642476292547e-08!GO:0000785;chromatin;6.9898080973893e-08!GO:0009150;purine ribonucleotide metabolic process;7.48971272920326e-08!GO:0031497;chromatin assembly;7.57818257076619e-08!GO:0006461;protein complex assembly;8.17558529708747e-08!GO:0005788;endoplasmic reticulum lumen;1.36584434282699e-07!GO:0051188;cofactor biosynthetic process;1.38897849158034e-07!GO:0008135;translation factor activity, nucleic acid binding;1.48922267111809e-07!GO:0016740;transferase activity;1.56728319583486e-07!GO:0044427;chromosomal part;1.61037532394664e-07!GO:0006164;purine nucleotide biosynthetic process;1.66066565610952e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.80650904637826e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.8602856172855e-07!GO:0051603;proteolysis involved in cellular protein catabolic process;1.95098456106268e-07!GO:0030036;actin cytoskeleton organization and biogenesis;1.97238913663869e-07!GO:0065004;protein-DNA complex assembly;2.14406983566566e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.18616229729642e-07!GO:0019941;modification-dependent protein catabolic process;2.28685459831235e-07!GO:0043632;modification-dependent macromolecule catabolic process;2.28685459831235e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.28685459831235e-07!GO:0044257;cellular protein catabolic process;2.42938295659588e-07!GO:0009259;ribonucleotide metabolic process;2.58984025485547e-07!GO:0005694;chromosome;3.51896102927595e-07!GO:0022403;cell cycle phase;3.55147636485219e-07!GO:0006511;ubiquitin-dependent protein catabolic process;3.57651361960719e-07!GO:0006913;nucleocytoplasmic transport;4.20107567054918e-07!GO:0044431;Golgi apparatus part;4.22546628570702e-07!GO:0016310;phosphorylation;4.22546628570702e-07!GO:0030163;protein catabolic process;4.76788933146727e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.46914943622926e-07!GO:0042254;ribosome biogenesis and assembly;6.04533225985217e-07!GO:0009199;ribonucleoside triphosphate metabolic process;6.13059670852496e-07!GO:0009260;ribonucleotide biosynthetic process;6.15499820745305e-07!GO:0048522;positive regulation of cellular process;7.14241854022034e-07!GO:0051169;nuclear transport;7.35115431467976e-07!GO:0009141;nucleoside triphosphate metabolic process;7.38759650080461e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.010582845833e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.010582845833e-07!GO:0005635;nuclear envelope;9.20281763335451e-07!GO:0016023;cytoplasmic membrane-bound vesicle;9.80129767518184e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.14406463247796e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.14406463247796e-06!GO:0009117;nucleotide metabolic process;1.15738027412861e-06!GO:0007067;mitosis;1.44368625935592e-06!GO:0031988;membrane-bound vesicle;1.46408420311359e-06!GO:0006974;response to DNA damage stimulus;1.57205721837125e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.63585485386732e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.63585485386732e-06!GO:0016564;transcription repressor activity;1.78108296430543e-06!GO:0030029;actin filament-based process;2.02794122700519e-06!GO:0003714;transcription corepressor activity;2.04265329749633e-06!GO:0015986;ATP synthesis coupled proton transport;2.56515348230614e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.56515348230614e-06!GO:0000087;M phase of mitotic cell cycle;2.63991835540095e-06!GO:0017038;protein import;2.91717753541924e-06!GO:0007005;mitochondrion organization and biogenesis;3.06400031591103e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.15566707223154e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.15566707223154e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.15728928338153e-06!GO:0016491;oxidoreductase activity;3.66495622841819e-06!GO:0008639;small protein conjugating enzyme activity;3.84572672403526e-06!GO:0003924;GTPase activity;4.17251071314386e-06!GO:0044453;nuclear membrane part;4.29307259799796e-06!GO:0008565;protein transporter activity;4.51144349866833e-06!GO:0019829;cation-transporting ATPase activity;4.58706652574446e-06!GO:0043069;negative regulation of programmed cell death;4.91159730528208e-06!GO:0031965;nuclear membrane;5.08605799674462e-06!GO:0045786;negative regulation of progression through cell cycle;5.27176306175297e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.62132633716277e-06!GO:0003743;translation initiation factor activity;5.96598800325124e-06!GO:0030120;vesicle coat;5.9977807197933e-06!GO:0030662;coated vesicle membrane;5.9977807197933e-06!GO:0051329;interphase of mitotic cell cycle;6.06345918607155e-06!GO:0046034;ATP metabolic process;6.34243726775822e-06!GO:0006260;DNA replication;6.48135852819686e-06!GO:0042623;ATPase activity, coupled;6.74465368153481e-06!GO:0007243;protein kinase cascade;7.00165962151207e-06!GO:0031252;leading edge;7.00941066930398e-06!GO:0043066;negative regulation of apoptosis;7.09923324276288e-06!GO:0004842;ubiquitin-protein ligase activity;7.2119038205935e-06!GO:0016604;nuclear body;8.55555876491272e-06!GO:0001568;blood vessel development;8.5563045062247e-06!GO:0006399;tRNA metabolic process;8.56998727612649e-06!GO:0001944;vasculature development;8.86352660279388e-06!GO:0005905;coated pit;8.93249101905737e-06!GO:0009719;response to endogenous stimulus;9.00734940814727e-06!GO:0005667;transcription factor complex;1.01447945239536e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.05572653144428e-05!GO:0065002;intracellular protein transport across a membrane;1.09530896830053e-05!GO:0045259;proton-transporting ATP synthase complex;1.11106396151938e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.11106396151938e-05!GO:0004812;aminoacyl-tRNA ligase activity;1.11106396151938e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.11106396151938e-05!GO:0019787;small conjugating protein ligase activity;1.12980378682304e-05!GO:0005768;endosome;1.23136804831401e-05!GO:0007010;cytoskeleton organization and biogenesis;1.30544878689357e-05!GO:0009108;coenzyme biosynthetic process;1.4943987885142e-05!GO:0051246;regulation of protein metabolic process;1.5313664571001e-05!GO:0006754;ATP biosynthetic process;1.53849420524011e-05!GO:0006753;nucleoside phosphate metabolic process;1.53849420524011e-05!GO:0031324;negative regulation of cellular metabolic process;1.57421258951791e-05!GO:0008361;regulation of cell size;1.61999034754462e-05!GO:0031410;cytoplasmic vesicle;1.63648537105624e-05!GO:0031982;vesicle;1.637696260014e-05!GO:0051325;interphase;1.76904553270874e-05!GO:0016049;cell growth;1.86495942138227e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.89862506112379e-05!GO:0000139;Golgi membrane;1.91081858364762e-05!GO:0000786;nucleosome;2.06154114884676e-05!GO:0016887;ATPase activity;2.08258497405193e-05!GO:0019899;enzyme binding;2.10740362547391e-05!GO:0006916;anti-apoptosis;2.16580287428038e-05!GO:0048475;coated membrane;2.63832091096719e-05!GO:0030117;membrane coat;2.63832091096719e-05!GO:0048518;positive regulation of biological process;2.76553841134932e-05!GO:0006413;translational initiation;2.85072364551887e-05!GO:0016568;chromatin modification;3.06003913878675e-05!GO:0005762;mitochondrial large ribosomal subunit;3.20340518166559e-05!GO:0000315;organellar large ribosomal subunit;3.20340518166559e-05!GO:0006281;DNA repair;3.2445958202377e-05!GO:0043038;amino acid activation;3.37070317008724e-05!GO:0006418;tRNA aminoacylation for protein translation;3.37070317008724e-05!GO:0043039;tRNA aminoacylation;3.37070317008724e-05!GO:0051301;cell division;3.37356422159003e-05!GO:0006446;regulation of translational initiation;3.4849971937056e-05!GO:0001558;regulation of cell growth;3.63545025275369e-05!GO:0005525;GTP binding;3.76590973017047e-05!GO:0005839;proteasome core complex (sensu Eukaryota);4.02787835900086e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.09757099292586e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;4.70783510454217e-05!GO:0015630;microtubule cytoskeleton;4.86326617396052e-05!GO:0044262;cellular carbohydrate metabolic process;5.4727350965652e-05!GO:0016881;acid-amino acid ligase activity;7.0726498850412e-05!GO:0016853;isomerase activity;7.45624322457506e-05!GO:0016044;membrane organization and biogenesis;7.45624322457506e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.49966782437612e-05!GO:0005773;vacuole;7.49966782437612e-05!GO:0006888;ER to Golgi vesicle-mediated transport;7.54299377931033e-05!GO:0016779;nucleotidyltransferase activity;8.25553762251456e-05!GO:0008654;phospholipid biosynthetic process;8.88505496532907e-05!GO:0003697;single-stranded DNA binding;9.46467949703788e-05!GO:0031968;organelle outer membrane;0.000106089311517939!GO:0009056;catabolic process;0.000115563934961964!GO:0016563;transcription activator activity;0.000130793586814916!GO:0045454;cell redox homeostasis;0.000172445250579458!GO:0048468;cell development;0.000180999907936882!GO:0006364;rRNA processing;0.000185495587539343!GO:0051789;response to protein stimulus;0.000196669384888011!GO:0006986;response to unfolded protein;0.000196669384888011!GO:0042802;identical protein binding;0.00021281404309841!GO:0033116;ER-Golgi intermediate compartment membrane;0.000213283215136263!GO:0009892;negative regulation of metabolic process;0.000214285312848245!GO:0000279;M phase;0.000219074595195538!GO:0065009;regulation of a molecular function;0.000227218431451052!GO:0008092;cytoskeletal protein binding;0.000237861744928529!GO:0009165;nucleotide biosynthetic process;0.000237945713381846!GO:0004298;threonine endopeptidase activity;0.000240497533127064!GO:0005770;late endosome;0.000244279235440963!GO:0005741;mitochondrial outer membrane;0.000257069739895001!GO:0019867;outer membrane;0.000260068036002987!GO:0006606;protein import into nucleus;0.000262739438325714!GO:0044440;endosomal part;0.000262739438325714!GO:0010008;endosome membrane;0.000262739438325714!GO:0016072;rRNA metabolic process;0.000265151778252002!GO:0006752;group transfer coenzyme metabolic process;0.000271531043016226!GO:0005643;nuclear pore;0.000279358101003883!GO:0048514;blood vessel morphogenesis;0.000279358101003883!GO:0051170;nuclear import;0.000304114887724329!GO:0032561;guanyl ribonucleotide binding;0.000306869662415072!GO:0019001;guanyl nucleotide binding;0.000306869662415072!GO:0007264;small GTPase mediated signal transduction;0.000310546936717863!GO:0009060;aerobic respiration;0.000329555072046542!GO:0016481;negative regulation of transcription;0.000334470167304171!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000372452768545401!GO:0050794;regulation of cellular process;0.000405930687438219!GO:0000323;lytic vacuole;0.000462117374354599!GO:0005764;lysosome;0.000462117374354599!GO:0000245;spliceosome assembly;0.000554996334769853!GO:0030867;rough endoplasmic reticulum membrane;0.000559349724807878!GO:0006950;response to stress;0.000571125738601636!GO:0046930;pore complex;0.000581045853504344!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000643886881645769!GO:0015399;primary active transmembrane transporter activity;0.000643886881645769!GO:0008632;apoptotic program;0.000696019411671326!GO:0016787;hydrolase activity;0.00071291180030884!GO:0001525;angiogenesis;0.000770141332550174!GO:0016607;nuclear speck;0.000837597549588026!GO:0040008;regulation of growth;0.000877208433694616!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00090921502450061!GO:0008286;insulin receptor signaling pathway;0.000922397951190355!GO:0030176;integral to endoplasmic reticulum membrane;0.000963796296962244!GO:0005769;early endosome;0.000996044675213048!GO:0045941;positive regulation of transcription;0.00102390267078844!GO:0032446;protein modification by small protein conjugation;0.00102926461769193!GO:0005798;Golgi-associated vesicle;0.00103382607909555!GO:0003899;DNA-directed RNA polymerase activity;0.00107205094341671!GO:0003676;nucleic acid binding;0.00107948404072439!GO:0016567;protein ubiquitination;0.00114440889184526!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00118086569441248!GO:0046474;glycerophospholipid biosynthetic process;0.00130463125344632!GO:0045333;cellular respiration;0.00132753195219678!GO:0005048;signal sequence binding;0.00134745993879934!GO:0006091;generation of precursor metabolites and energy;0.00145930060890963!GO:0030132;clathrin coat of coated pit;0.00145930060890963!GO:0043681;protein import into mitochondrion;0.00148648510102265!GO:0007242;intracellular signaling cascade;0.0015198115199136!GO:0016859;cis-trans isomerase activity;0.00155162584831699!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0015989708348119!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0016606537401202!GO:0030133;transport vesicle;0.00181064719970814!GO:0000151;ubiquitin ligase complex;0.00185628193138985!GO:0008047;enzyme activator activity;0.00194326469377236!GO:0008250;oligosaccharyl transferase complex;0.00196477996386509!GO:0006897;endocytosis;0.00197947227721554!GO:0010324;membrane invagination;0.00197947227721554!GO:0007006;mitochondrial membrane organization and biogenesis;0.00205475815966692!GO:0046467;membrane lipid biosynthetic process;0.00213282262675809!GO:0051427;hormone receptor binding;0.00214955137490661!GO:0008610;lipid biosynthetic process;0.00217602927178974!GO:0043623;cellular protein complex assembly;0.00228874870455919!GO:0006626;protein targeting to mitochondrion;0.0023043101604496!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00239242540879771!GO:0005791;rough endoplasmic reticulum;0.00242104650352664!GO:0019843;rRNA binding;0.00246424783764702!GO:0043566;structure-specific DNA binding;0.00251548074213548!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00256551568137362!GO:0045792;negative regulation of cell size;0.00267967400390207!GO:0006099;tricarboxylic acid cycle;0.00278745732427624!GO:0046356;acetyl-CoA catabolic process;0.00278745732427624!GO:0005774;vacuolar membrane;0.00278985774600459!GO:0043488;regulation of mRNA stability;0.00285395105012808!GO:0043487;regulation of RNA stability;0.00285395105012808!GO:0003713;transcription coactivator activity;0.00289145404343135!GO:0030308;negative regulation of cell growth;0.0029723692274904!GO:0000314;organellar small ribosomal subunit;0.00310276992135059!GO:0005763;mitochondrial small ribosomal subunit;0.00310276992135059!GO:0008283;cell proliferation;0.00312590070973163!GO:0050789;regulation of biological process;0.00317906448623838!GO:0009967;positive regulation of signal transduction;0.00321581799331865!GO:0006740;NADPH regeneration;0.00322874176693476!GO:0006098;pentose-phosphate shunt;0.00322874176693476!GO:0051187;cofactor catabolic process;0.00333063829099051!GO:0000082;G1/S transition of mitotic cell cycle;0.0034060846533078!GO:0035257;nuclear hormone receptor binding;0.00346639251572645!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00355238132245688!GO:0006084;acetyl-CoA metabolic process;0.00370262148237234!GO:0051920;peroxiredoxin activity;0.00372776732424056!GO:0007346;regulation of progression through mitotic cell cycle;0.00372776732424056!GO:0043284;biopolymer biosynthetic process;0.00386544029928549!GO:0005885;Arp2/3 protein complex;0.00394057310850523!GO:0051087;chaperone binding;0.00406715097588725!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00411208113292164!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00416454223925943!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00416454223925943!GO:0005813;centrosome;0.00425728955093595!GO:0033673;negative regulation of kinase activity;0.00435937223482602!GO:0006469;negative regulation of protein kinase activity;0.00435937223482602!GO:0018196;peptidyl-asparagine modification;0.00445502533070706!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00445502533070706!GO:0031589;cell-substrate adhesion;0.00447972378412263!GO:0017166;vinculin binding;0.00447972378412263!GO:0043492;ATPase activity, coupled to movement of substances;0.00461448439805668!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00482442297632955!GO:0051348;negative regulation of transferase activity;0.00490131843948617!GO:0030659;cytoplasmic vesicle membrane;0.00493374466964589!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00497967582422991!GO:0016126;sterol biosynthetic process;0.00498894290195037!GO:0006414;translational elongation;0.00504285233123361!GO:0031301;integral to organelle membrane;0.00527770668540897!GO:0045893;positive regulation of transcription, DNA-dependent;0.00530585216710411!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00545526412653203!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00548945563315861!GO:0045892;negative regulation of transcription, DNA-dependent;0.0054996905257543!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00560441147946472!GO:0015002;heme-copper terminal oxidase activity;0.00560441147946472!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00560441147946472!GO:0004129;cytochrome-c oxidase activity;0.00560441147946472!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00562307021099058!GO:0050790;regulation of catalytic activity;0.00613119988155273!GO:0044437;vacuolar part;0.00617306766439287!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00636480031073922!GO:0006778;porphyrin metabolic process;0.00636480031073922!GO:0033013;tetrapyrrole metabolic process;0.00636480031073922!GO:0005815;microtubule organizing center;0.00645582166138627!GO:0051101;regulation of DNA binding;0.00666469692577475!GO:0001952;regulation of cell-matrix adhesion;0.00666905542385748!GO:0008026;ATP-dependent helicase activity;0.00668035251987907!GO:0019318;hexose metabolic process;0.00688087716281474!GO:0030041;actin filament polymerization;0.00691428534850631!GO:0015992;proton transport;0.00698193301314954!GO:0006818;hydrogen transport;0.00704540477504303!GO:0051252;regulation of RNA metabolic process;0.00704540477504303!GO:0009109;coenzyme catabolic process;0.00722906439628876!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00723363056886188!GO:0046489;phosphoinositide biosynthetic process;0.00733746314211675!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00743163102902101!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00743163102902101!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00743163102902101!GO:0006509;membrane protein ectodomain proteolysis;0.00744493338011287!GO:0033619;membrane protein proteolysis;0.00744493338011287!GO:0005765;lysosomal membrane;0.00756149789320611!GO:0030880;RNA polymerase complex;0.00759791157898138!GO:0031543;peptidyl-proline dioxygenase activity;0.00796178230496365!GO:0006839;mitochondrial transport;0.0081285652701196!GO:0016301;kinase activity;0.00813189189984251!GO:0005684;U2-dependent spliceosome;0.00813189189984251!GO:0001726;ruffle;0.0085715140593616!GO:0030658;transport vesicle membrane;0.00867390027239467!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00881469579457205!GO:0016860;intramolecular oxidoreductase activity;0.00905737209747265!GO:0016070;RNA metabolic process;0.0096334475360043!GO:0030118;clathrin coat;0.00970938815308538!GO:0004576;oligosaccharyl transferase activity;0.00975643188297733!GO:0003779;actin binding;0.00992741805115764!GO:0045926;negative regulation of growth;0.0101892518514611!GO:0022890;inorganic cation transmembrane transporter activity;0.010276785866827!GO:0051270;regulation of cell motility;0.0104621567309733!GO:0043086;negative regulation of catalytic activity;0.0104635479205662!GO:0006790;sulfur metabolic process;0.0106177941500469!GO:0006979;response to oxidative stress;0.0107487008804112!GO:0044433;cytoplasmic vesicle part;0.0111659209272426!GO:0022415;viral reproductive process;0.0113642639724201!GO:0031272;regulation of pseudopodium formation;0.0114354964269775!GO:0031269;pseudopodium formation;0.0114354964269775!GO:0031344;regulation of cell projection organization and biogenesis;0.0114354964269775!GO:0031268;pseudopodium organization and biogenesis;0.0114354964269775!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0114354964269775!GO:0031274;positive regulation of pseudopodium formation;0.0114354964269775!GO:0005819;spindle;0.0115001621805957!GO:0004386;helicase activity;0.0117916275388982!GO:0019798;procollagen-proline dioxygenase activity;0.0118891109503872!GO:0007040;lysosome organization and biogenesis;0.0121983208742652!GO:0015036;disulfide oxidoreductase activity;0.0122044178849497!GO:0042168;heme metabolic process;0.0125984376644431!GO:0008637;apoptotic mitochondrial changes;0.0131055961108974!GO:0006779;porphyrin biosynthetic process;0.013253265730866!GO:0033014;tetrapyrrole biosynthetic process;0.013253265730866!GO:0007033;vacuole organization and biogenesis;0.013286864807651!GO:0006403;RNA localization;0.013286864807651!GO:0007265;Ras protein signal transduction;0.0135455156576607!GO:0050657;nucleic acid transport;0.0135455156576607!GO:0051236;establishment of RNA localization;0.0135455156576607!GO:0050658;RNA transport;0.0135455156576607!GO:0048660;regulation of smooth muscle cell proliferation;0.0135501329901545!GO:0004674;protein serine/threonine kinase activity;0.0136998925546384!GO:0030027;lamellipodium;0.0138648950225045!GO:0005100;Rho GTPase activator activity;0.0141501475534872!GO:0045936;negative regulation of phosphate metabolic process;0.0142555661773441!GO:0031072;heat shock protein binding;0.0144169873944537!GO:0048646;anatomical structure formation;0.0145791874547146!GO:0006520;amino acid metabolic process;0.0149611431009561!GO:0007160;cell-matrix adhesion;0.0151101553600823!GO:0001666;response to hypoxia;0.0152236867586992!GO:0006807;nitrogen compound metabolic process;0.0154077405104893!GO:0006458;'de novo' protein folding;0.0157315982010086!GO:0051084;'de novo' posttranslational protein folding;0.0157315982010086!GO:0043021;ribonucleoprotein binding;0.0157389813639353!GO:0005874;microtubule;0.0159203028202876!GO:0005996;monosaccharide metabolic process;0.0159617680006409!GO:0006595;polyamine metabolic process;0.0159617680006409!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0160679813640554!GO:0000428;DNA-directed RNA polymerase complex;0.0160679813640554!GO:0006739;NADP metabolic process;0.0167070310504951!GO:0005096;GTPase activator activity;0.0171462266153619!GO:0007162;negative regulation of cell adhesion;0.0172775321739925!GO:0008139;nuclear localization sequence binding;0.0172829922825482!GO:0005862;muscle thin filament tropomyosin;0.0173950572294439!GO:0000049;tRNA binding;0.0174646714625958!GO:0040011;locomotion;0.0176539508641188!GO:0048487;beta-tubulin binding;0.0176539508641188!GO:0031902;late endosome membrane;0.0183546461326549!GO:0030660;Golgi-associated vesicle membrane;0.0187836759067327!GO:0015980;energy derivation by oxidation of organic compounds;0.019039984880956!GO:0030125;clathrin vesicle coat;0.0193050102779841!GO:0030665;clathrin coated vesicle membrane;0.0193050102779841!GO:0007050;cell cycle arrest;0.0193311181185384!GO:0022408;negative regulation of cell-cell adhesion;0.0199773484005656!GO:0003724;RNA helicase activity;0.0204636239750561!GO:0006695;cholesterol biosynthetic process;0.0204888599797471!GO:0018193;peptidyl-amino acid modification;0.0205393356889115!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0211714859075342!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0211714859075342!GO:0035035;histone acetyltransferase binding;0.0212417358959286!GO:0006082;organic acid metabolic process;0.0218328828448333!GO:0008243;plasminogen activator activity;0.0221029944613515!GO:0043065;positive regulation of apoptosis;0.0223493446963829!GO:0003729;mRNA binding;0.0224285687088666!GO:0006066;alcohol metabolic process;0.0228000571644585!GO:0030119;AP-type membrane coat adaptor complex;0.0228564831058191!GO:0046822;regulation of nucleocytoplasmic transport;0.0232459028725012!GO:0006650;glycerophospholipid metabolic process;0.0232459028725012!GO:0043068;positive regulation of programmed cell death;0.023358776531931!GO:0009893;positive regulation of metabolic process;0.0235911585846022!GO:0030137;COPI-coated vesicle;0.0239598162604004!GO:0001953;negative regulation of cell-matrix adhesion;0.0243208113951978!GO:0006613;cotranslational protein targeting to membrane;0.0243876965013572!GO:0030663;COPI coated vesicle membrane;0.0244168061919507!GO:0030126;COPI vesicle coat;0.0244168061919507!GO:0046426;negative regulation of JAK-STAT cascade;0.0244377882448909!GO:0019752;carboxylic acid metabolic process;0.0244423404643145!GO:0003756;protein disulfide isomerase activity;0.0244423404643145!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0244423404643145!GO:0051235;maintenance of localization;0.0245087898801756!GO:0005092;GDP-dissociation inhibitor activity;0.0247319542645875!GO:0009308;amine metabolic process;0.0248891818533643!GO:0006783;heme biosynthetic process;0.0250747990832218!GO:0006007;glucose catabolic process;0.025147678979264!GO:0051168;nuclear export;0.0261569114623966!GO:0040012;regulation of locomotion;0.0261569114623966!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0263775573037176!GO:0009966;regulation of signal transduction;0.026527357075576!GO:0012506;vesicle membrane;0.0266589576953643!GO:0030433;ER-associated protein catabolic process;0.0267069669997796!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0267069669997796!GO:0033559;unsaturated fatty acid metabolic process;0.0267069669997796!GO:0006636;unsaturated fatty acid biosynthetic process;0.0267069669997796!GO:0008154;actin polymerization and/or depolymerization;0.0275623163145086!GO:0016363;nuclear matrix;0.0276735863387372!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.027795919627829!GO:0006289;nucleotide-excision repair;0.0278345813242715!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0278670049021869!GO:0050178;phenylpyruvate tautomerase activity;0.0279025440694804!GO:0051098;regulation of binding;0.027972729600171!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0284990063113809!GO:0006383;transcription from RNA polymerase III promoter;0.0286364205504339!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.029065782269966!GO:0043281;regulation of caspase activity;0.0291423135065425!GO:0031300;intrinsic to organelle membrane;0.0298151791686327!GO:0005975;carbohydrate metabolic process;0.0298151791686327!GO:0019904;protein domain specific binding;0.0298866317001349!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0301979482827019!GO:0046483;heterocycle metabolic process;0.0304070691588887!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0304070691588887!GO:0016272;prefoldin complex;0.0310022425754708!GO:0006891;intra-Golgi vesicle-mediated transport;0.0311571793206611!GO:0016125;sterol metabolic process;0.0314200226228991!GO:0048659;smooth muscle cell proliferation;0.0321866822540788!GO:0005637;nuclear inner membrane;0.0321866822540788!GO:0046519;sphingoid metabolic process;0.0321866822540788!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0325702328042426!GO:0042326;negative regulation of phosphorylation;0.0326324270284881!GO:0051085;chaperone cofactor-dependent protein folding;0.0326324270284881!GO:0008629;induction of apoptosis by intracellular signals;0.0328360569105852!GO:0030131;clathrin adaptor complex;0.0336593629145792!GO:0003684;damaged DNA binding;0.0337082166383611!GO:0031418;L-ascorbic acid binding;0.0342642227672119!GO:0007266;Rho protein signal transduction;0.0351167170145858!GO:0000902;cell morphogenesis;0.0351186434437009!GO:0032989;cellular structure morphogenesis;0.0351186434437009!GO:0000084;S phase of mitotic cell cycle;0.0356640266828884!GO:0008186;RNA-dependent ATPase activity;0.0358550953333959!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0364936834845644!GO:0048471;perinuclear region of cytoplasm;0.0369162075356352!GO:0016197;endosome transport;0.037168965532118!GO:0030134;ER to Golgi transport vesicle;0.037469027770327!GO:0030100;regulation of endocytosis;0.0375941872392228!GO:0030127;COPII vesicle coat;0.0379088147800608!GO:0012507;ER to Golgi transport vesicle membrane;0.0379088147800608!GO:0005657;replication fork;0.0379804009119362!GO:0000287;magnesium ion binding;0.0379880611877546!GO:0045334;clathrin-coated endocytic vesicle;0.0379965174007034!GO:0035258;steroid hormone receptor binding;0.0385099572224208!GO:0030031;cell projection biogenesis;0.0387815520858853!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0388996512961241!GO:0030508;thiol-disulfide exchange intermediate activity;0.0399640704063026!GO:0006506;GPI anchor biosynthetic process;0.0403487648051577!GO:0000209;protein polyubiquitination;0.0405605816555902!GO:0065007;biological regulation;0.0416788416527007!GO:0032508;DNA duplex unwinding;0.0420049975600873!GO:0032392;DNA geometric change;0.0420049975600873!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0421119640885143!GO:0006611;protein export from nucleus;0.0421119640885143!GO:0005856;cytoskeleton;0.0421119640885143!GO:0040029;regulation of gene expression, epigenetic;0.0426414011958325!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0426414011958325!GO:0001836;release of cytochrome c from mitochondria;0.0426898496358265!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0426898496358265!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0430327148571164!GO:0008538;proteasome activator activity;0.0432416182175732!GO:0051336;regulation of hydrolase activity;0.0433427864681081!GO:0032507;maintenance of cellular protein localization;0.0442211356323521!GO:0016791;phosphoric monoester hydrolase activity;0.0450262117550526!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0455639433996343!GO:0043407;negative regulation of MAP kinase activity;0.0456124188019877!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0456124188019877!GO:0010257;NADH dehydrogenase complex assembly;0.0456124188019877!GO:0033108;mitochondrial respiratory chain complex assembly;0.0456124188019877!GO:0006505;GPI anchor metabolic process;0.0457059286637011!GO:0006733;oxidoreduction coenzyme metabolic process;0.0461880608918892!GO:0030128;clathrin coat of endocytic vesicle;0.0463957039000395!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0463957039000395!GO:0030122;AP-2 adaptor complex;0.0463957039000395!GO:0043433;negative regulation of transcription factor activity;0.0465971668961101!GO:0008033;tRNA processing;0.0469354956417655!GO:0006643;membrane lipid metabolic process;0.0480173263688503!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0484731284388741!GO:0051287;NAD binding;0.0484731284388741!GO:0009303;rRNA transcription;0.0485529705339641!GO:0004680;casein kinase activity;0.0492729559441221!GO:0030833;regulation of actin filament polymerization;0.0493909314147473 | |||
|sample_id=11601 | |sample_id=11601 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=liver | |sample_tissue=liver | ||
|top_motifs=ZNF423:2.53205342179;RXRA_VDR{dimer}:1.77437877088;EBF1:1.70078054385;RXR{A,B,G}:1.69162435308;TFAP2{A,C}:1.67010903676;GLI1..3:1.62828583686;SPZ1:1.62442303293;GTF2A1,2:1.61264120938;ESR1:1.4595731688;GZF1:1.43438011552;TLX1..3_NFIC{dimer}:1.41781781947;SRF:1.33685823365;NR5A1,2:1.30153753844;ZNF148:1.27220320147;PPARG:1.25162775316;POU2F1..3:1.20736346318;PBX1:1.20515822991;XCPE1{core}:1.11298322623;TBP:1.10897172199;ESRRA:1.08251217381;bHLH_family:1.0816403223;HES1:1.03221211154;SOX{8,9,10}:1.02938599865;TFCP2:0.982780183881;IKZF1:0.945014758524;TFAP4:0.932202012186;NANOG:0.873757166523;SMAD1..7,9:0.85543934702;ZIC1..3:0.829249280446;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.800341920702;SOX17:0.775470792023;RREB1:0.769485765974;ZNF238:0.753122735603;LEF1_TCF7_TCF7L1,2:0.748781485653;NR3C1:0.747170857234;HOX{A5,B5}:0.70793294977;HIC1:0.668720997455;PAX1,9:0.660711914157;TAL1_TCF{3,4,12}:0.610611435178;ZBTB6:0.59442617461;LMO2:0.579599434754;TFAP2B:0.572854973255;REST:0.565230378025;TEAD1:0.564164466107;CRX:0.554482256341;ONECUT1,2:0.53726690489;AR:0.524746323724;NR6A1:0.511753887934;GTF2I:0.498897208859;PATZ1:0.459722740718;HNF4A_NR2F1,2:0.45822334503;SP1:0.400095141315;HAND1,2:0.397314618209;ETS1,2:0.391385314908;MYOD1:0.356695687559;GATA6:0.345681027125;GFI1B:0.342640757981;PAX8:0.334470508402;GCM1,2:0.329667851426;NKX2-3_NKX2-5:0.306013427097;MEF2{A,B,C,D}:0.304817435287;TP53:0.26035069779;GFI1:0.247066858521;NKX3-2:0.243652750999;BACH2:0.211058339055;POU3F1..4:0.207751904623;TOPORS:0.181929175572;NFE2:0.175695091455;FOSL2:0.161661532905;STAT2,4,6:0.153067232946;NFE2L2:0.15270893705;NFATC1..3:0.142202991568;FOXL1:0.129839392173;NFE2L1:0.126617334217;MED-1{core}:0.123580727463;MAFB:0.12188040716;HLF:0.120976522806;UFEwm:0.116814834084;HIF1A:0.102634227651;FOS_FOS{B,L1}_JUN{B,D}:0.0770760953391;MZF1:0.0683307775901;VSX1,2:0.0634385796403;KLF4:0.0533471039302;SOX2:0.0500045034466;NFKB1_REL_RELA:0.0344247221305;LHX3,4:0.0292992033116;SPIB:0.0103798213407;PAX5:0.0102166949832;ARID5B:-0.00133933116921;HNF1A:-0.0228673445319;XBP1:-0.0299828253302;PAX6:-0.0345415001102;RUNX1..3:-0.0731808725115;MTF1:-0.0777447649528;POU6F1:-0.0999439071224;PITX1..3:-0.102972399656;MAZ:-0.127202710242;FOXM1:-0.149963201512;TFDP1:-0.18082718517;MTE{core}:-0.227486267762;SPI1:-0.252676629223;CDC5L:-0.262510992811;FOX{F1,F2,J1}:-0.267863651503;JUN:-0.268089848661;HMX1:-0.280220737356;NHLH1,2:-0.285066269416;MYB:-0.289678609828;PAX3,7:-0.2989320841;RORA:-0.302535829403;PRRX1,2:-0.321068784862;HSF1,2:-0.323489909937;NFIX:-0.335292133202;TBX4,5:-0.342944018651;NFY{A,B,C}:-0.344665684774;E2F1..5:-0.365546860002;PRDM1:-0.367425058903;CEBPA,B_DDIT3:-0.38035914105;RFX1:-0.381395089535;ZNF384:-0.385231433724;CUX2:-0.388294136747;ALX1:-0.397059563225;SOX5:-0.416933994953;TEF:-0.427125522085;AHR_ARNT_ARNT2:-0.431390601254;MYFfamily:-0.431551616561;EGR1..3:-0.441862912057;NKX2-2,8:-0.445415678848;SNAI1..3:-0.467805108225;FOX{I1,J2}:-0.4743084671;NANOG{mouse}:-0.475082593536;STAT5{A,B}:-0.485352165749;IKZF2:-0.489066627466;ZFP161:-0.495133145771;BREu{core}:-0.51321740356;POU5F1:-0.525816676414;ATF6:-0.529548204857;ATF2:-0.54805561825;FOX{D1,D2}:-0.553068570925;HOXA9_MEIS1:-0.55624299812;POU1F1:-0.579669535393;HOX{A6,A7,B6,B7}:-0.595180555039;HOX{A4,D4}:-0.603099645463;OCT4_SOX2{dimer}:-0.604896945866;EP300:-0.607176845547;ALX4:-0.608341053333;PAX2:-0.609005581221;ZEB1:-0.617874218227;NFIL3:-0.664079789035;TLX2:-0.69718726696;DBP:-0.716418921053;EVI1:-0.727236739574;NKX3-1:-0.73724097266;FOXP3:-0.751455911139;GATA4:-0.759035544427;ELF1,2,4:-0.800898351353;FOXQ1:-0.815540827698;FOXA2:-0.820107502279;ZNF143:-0.847752697623;MYBL2:-0.868140994618;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.881519741953;IRF1,2:-0.892645852201;ATF4:-0.906104967931;RBPJ:-0.910076562088;NKX2-1,4:-0.920641489484;CDX1,2,4:-0.925266854492;ADNP_IRX_SIX_ZHX:-0.931292888581;EN1,2:-0.936826098084;FOXD3:-0.962422535705;DMAP1_NCOR{1,2}_SMARC:-0.991204110094;NR1H4:-1.00981066112;HBP1_HMGB_SSRP1_UBTF:-1.08224648987;TGIF1:-1.10913165818;T:-1.13024770957;CREB1:-1.14225038091;IRF7:-1.16486898864;FOXP1:-1.19129346635;YY1:-1.23427147816;PAX4:-1.26453724529;FOXO1,3,4:-1.27051147556;NRF1:-1.281130612;ATF5_CREB3:-1.29561378056;HMGA1,2:-1.31799395319;ZBTB16:-1.41430434161;AIRE:-1.41852784223;RFX2..5_RFXANK_RFXAP:-1.45698316545;SREBF1,2:-1.64534122891;STAT1,3:-1.65025867123;BPTF:-1.6753579504;NKX6-1,2:-1.68644214645;PDX1:-1.95357524526;ELK1,4_GABP{A,B1}:-2.2081001702;FOXN1:-2.63768089695 | |top_motifs=ZNF423:2.53205342179;RXRA_VDR{dimer}:1.77437877088;EBF1:1.70078054385;RXR{A,B,G}:1.69162435308;TFAP2{A,C}:1.67010903676;GLI1..3:1.62828583686;SPZ1:1.62442303293;GTF2A1,2:1.61264120938;ESR1:1.4595731688;GZF1:1.43438011552;TLX1..3_NFIC{dimer}:1.41781781947;SRF:1.33685823365;NR5A1,2:1.30153753844;ZNF148:1.27220320147;PPARG:1.25162775316;POU2F1..3:1.20736346318;PBX1:1.20515822991;XCPE1{core}:1.11298322623;TBP:1.10897172199;ESRRA:1.08251217381;bHLH_family:1.0816403223;HES1:1.03221211154;SOX{8,9,10}:1.02938599865;TFCP2:0.982780183881;IKZF1:0.945014758524;TFAP4:0.932202012186;NANOG:0.873757166523;SMAD1..7,9:0.85543934702;ZIC1..3:0.829249280446;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.800341920702;SOX17:0.775470792023;RREB1:0.769485765974;ZNF238:0.753122735603;LEF1_TCF7_TCF7L1,2:0.748781485653;NR3C1:0.747170857234;HOX{A5,B5}:0.70793294977;HIC1:0.668720997455;PAX1,9:0.660711914157;TAL1_TCF{3,4,12}:0.610611435178;ZBTB6:0.59442617461;LMO2:0.579599434754;TFAP2B:0.572854973255;REST:0.565230378025;TEAD1:0.564164466107;CRX:0.554482256341;ONECUT1,2:0.53726690489;AR:0.524746323724;NR6A1:0.511753887934;GTF2I:0.498897208859;PATZ1:0.459722740718;HNF4A_NR2F1,2:0.45822334503;SP1:0.400095141315;HAND1,2:0.397314618209;ETS1,2:0.391385314908;MYOD1:0.356695687559;GATA6:0.345681027125;GFI1B:0.342640757981;PAX8:0.334470508402;GCM1,2:0.329667851426;NKX2-3_NKX2-5:0.306013427097;MEF2{A,B,C,D}:0.304817435287;TP53:0.26035069779;GFI1:0.247066858521;NKX3-2:0.243652750999;BACH2:0.211058339055;POU3F1..4:0.207751904623;TOPORS:0.181929175572;NFE2:0.175695091455;FOSL2:0.161661532905;STAT2,4,6:0.153067232946;NFE2L2:0.15270893705;NFATC1..3:0.142202991568;FOXL1:0.129839392173;NFE2L1:0.126617334217;MED-1{core}:0.123580727463;MAFB:0.12188040716;HLF:0.120976522806;UFEwm:0.116814834084;HIF1A:0.102634227651;FOS_FOS{B,L1}_JUN{B,D}:0.0770760953391;MZF1:0.0683307775901;VSX1,2:0.0634385796403;KLF4:0.0533471039302;SOX2:0.0500045034466;NFKB1_REL_RELA:0.0344247221305;LHX3,4:0.0292992033116;SPIB:0.0103798213407;PAX5:0.0102166949832;ARID5B:-0.00133933116921;HNF1A:-0.0228673445319;XBP1:-0.0299828253302;PAX6:-0.0345415001102;RUNX1..3:-0.0731808725115;MTF1:-0.0777447649528;POU6F1:-0.0999439071224;PITX1..3:-0.102972399656;MAZ:-0.127202710242;FOXM1:-0.149963201512;TFDP1:-0.18082718517;MTE{core}:-0.227486267762;SPI1:-0.252676629223;CDC5L:-0.262510992811;FOX{F1,F2,J1}:-0.267863651503;JUN:-0.268089848661;HMX1:-0.280220737356;NHLH1,2:-0.285066269416;MYB:-0.289678609828;PAX3,7:-0.2989320841;RORA:-0.302535829403;PRRX1,2:-0.321068784862;HSF1,2:-0.323489909937;NFIX:-0.335292133202;TBX4,5:-0.342944018651;NFY{A,B,C}:-0.344665684774;E2F1..5:-0.365546860002;PRDM1:-0.367425058903;CEBPA,B_DDIT3:-0.38035914105;RFX1:-0.381395089535;ZNF384:-0.385231433724;CUX2:-0.388294136747;ALX1:-0.397059563225;SOX5:-0.416933994953;TEF:-0.427125522085;AHR_ARNT_ARNT2:-0.431390601254;MYFfamily:-0.431551616561;EGR1..3:-0.441862912057;NKX2-2,8:-0.445415678848;SNAI1..3:-0.467805108225;FOX{I1,J2}:-0.4743084671;NANOG{mouse}:-0.475082593536;STAT5{A,B}:-0.485352165749;IKZF2:-0.489066627466;ZFP161:-0.495133145771;BREu{core}:-0.51321740356;POU5F1:-0.525816676414;ATF6:-0.529548204857;ATF2:-0.54805561825;FOX{D1,D2}:-0.553068570925;HOXA9_MEIS1:-0.55624299812;POU1F1:-0.579669535393;HOX{A6,A7,B6,B7}:-0.595180555039;HOX{A4,D4}:-0.603099645463;OCT4_SOX2{dimer}:-0.604896945866;EP300:-0.607176845547;ALX4:-0.608341053333;PAX2:-0.609005581221;ZEB1:-0.617874218227;NFIL3:-0.664079789035;TLX2:-0.69718726696;DBP:-0.716418921053;EVI1:-0.727236739574;NKX3-1:-0.73724097266;FOXP3:-0.751455911139;GATA4:-0.759035544427;ELF1,2,4:-0.800898351353;FOXQ1:-0.815540827698;FOXA2:-0.820107502279;ZNF143:-0.847752697623;MYBL2:-0.868140994618;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.881519741953;IRF1,2:-0.892645852201;ATF4:-0.906104967931;RBPJ:-0.910076562088;NKX2-1,4:-0.920641489484;CDX1,2,4:-0.925266854492;ADNP_IRX_SIX_ZHX:-0.931292888581;EN1,2:-0.936826098084;FOXD3:-0.962422535705;DMAP1_NCOR{1,2}_SMARC:-0.991204110094;NR1H4:-1.00981066112;HBP1_HMGB_SSRP1_UBTF:-1.08224648987;TGIF1:-1.10913165818;T:-1.13024770957;CREB1:-1.14225038091;IRF7:-1.16486898864;FOXP1:-1.19129346635;YY1:-1.23427147816;PAX4:-1.26453724529;FOXO1,3,4:-1.27051147556;NRF1:-1.281130612;ATF5_CREB3:-1.29561378056;HMGA1,2:-1.31799395319;ZBTB16:-1.41430434161;AIRE:-1.41852784223;RFX2..5_RFXANK_RFXAP:-1.45698316545;SREBF1,2:-1.64534122891;STAT1,3:-1.65025867123;BPTF:-1.6753579504;NKX6-1,2:-1.68644214645;PDX1:-1.95357524526;ELK1,4_GABP{A,B1}:-2.2081001702;FOXN1:-2.63768089695 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11601-120H8;search_select_hide=table117:FF:11601-120H8 | |||
}} | }} | ||
Latest revision as of 18:11, 4 June 2020
| Name: | Hepatic Sinusoidal Endothelial Cells, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12092 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12092
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12092
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.655 |
| 10 | 10 | 0.521 |
| 100 | 100 | 0.979 |
| 101 | 101 | 0.651 |
| 102 | 102 | 0.943 |
| 103 | 103 | 0.621 |
| 104 | 104 | 0.22 |
| 105 | 105 | 0.0503 |
| 106 | 106 | 0.0175 |
| 107 | 107 | 0.00964 |
| 108 | 108 | 0.286 |
| 109 | 109 | 0.184 |
| 11 | 11 | 0.0785 |
| 110 | 110 | 0.149 |
| 111 | 111 | 0.8 |
| 112 | 112 | 0.402 |
| 113 | 113 | 0.951 |
| 114 | 114 | 0.327 |
| 115 | 115 | 0.763 |
| 116 | 116 | 0.21 |
| 117 | 117 | 0.941 |
| 118 | 118 | 0.871 |
| 119 | 119 | 0.228 |
| 12 | 12 | 0.636 |
| 120 | 120 | 0.0995 |
| 121 | 121 | 0.819 |
| 122 | 122 | 0.611 |
| 123 | 123 | 0.396 |
| 124 | 124 | 0.864 |
| 125 | 125 | 0.382 |
| 126 | 126 | 0.799 |
| 127 | 127 | 0.379 |
| 128 | 128 | 0.0249 |
| 129 | 129 | 0.196 |
| 13 | 13 | 0.431 |
| 130 | 130 | 0.246 |
| 131 | 131 | 0.56 |
| 132 | 132 | 0.235 |
| 133 | 133 | 0.289 |
| 134 | 134 | 0.881 |
| 135 | 135 | 0.138 |
| 136 | 136 | 0.411 |
| 137 | 137 | 0.538 |
| 138 | 138 | 0.978 |
| 139 | 139 | 0.087 |
| 14 | 14 | 0.865 |
| 140 | 140 | 0.979 |
| 141 | 141 | 0.879 |
| 142 | 142 | 0.345 |
| 143 | 143 | 0.00113 |
| 144 | 144 | 0.856 |
| 145 | 145 | 0.0855 |
| 146 | 146 | 0.226 |
| 147 | 147 | 0.251 |
| 148 | 148 | 0.79 |
| 149 | 149 | 0.0232 |
| 15 | 15 | 0.596 |
| 150 | 150 | 0.189 |
| 151 | 151 | 0.339 |
| 152 | 152 | 0.0501 |
| 153 | 153 | 0.382 |
| 154 | 154 | 0.477 |
| 155 | 155 | 0.844 |
| 156 | 156 | 0.573 |
| 157 | 157 | 0.146 |
| 158 | 158 | 0.724 |
| 159 | 159 | 0.822 |
| 16 | 16 | 0.241 |
| 160 | 160 | 0.00862 |
| 161 | 161 | 0.28 |
| 162 | 162 | 0.206 |
| 163 | 163 | 0.757 |
| 164 | 164 | 0.89 |
| 165 | 165 | 0.126 |
| 166 | 166 | 0.921 |
| 167 | 167 | 0.184 |
| 168 | 168 | 0.341 |
| 169 | 169 | 0.0283 |
| 17 | 17 | 0.123 |
| 18 | 18 | 0.0888 |
| 19 | 19 | 0.0759 |
| 2 | 2 | 0.214 |
| 20 | 20 | 0.363 |
| 21 | 21 | 0.714 |
| 22 | 22 | 0.113 |
| 23 | 23 | 0.0607 |
| 24 | 24 | 0.344 |
| 25 | 25 | 0.646 |
| 26 | 26 | 0.0628 |
| 27 | 27 | 0.206 |
| 28 | 28 | 0.364 |
| 29 | 29 | 0.893 |
| 3 | 3 | 0.488 |
| 30 | 30 | 0.31 |
| 31 | 31 | 0.388 |
| 32 | 32 | 9.41698e-4 |
| 33 | 33 | 0.542 |
| 34 | 34 | 0.147 |
| 35 | 35 | 0.659 |
| 36 | 36 | 0.607 |
| 37 | 37 | 0.291 |
| 38 | 38 | 0.236 |
| 39 | 39 | 0.302 |
| 4 | 4 | 0.252 |
| 40 | 40 | 0.0204 |
| 41 | 41 | 0.301 |
| 42 | 42 | 0.605 |
| 43 | 43 | 0.199 |
| 44 | 44 | 0.408 |
| 45 | 45 | 0.212 |
| 46 | 46 | 0.127 |
| 47 | 47 | 0.411 |
| 48 | 48 | 0.202 |
| 49 | 49 | 0.244 |
| 5 | 5 | 0.663 |
| 50 | 50 | 0.459 |
| 51 | 51 | 0.266 |
| 52 | 52 | 0.353 |
| 53 | 53 | 0.937 |
| 54 | 54 | 0.302 |
| 55 | 55 | 0.631 |
| 56 | 56 | 0.247 |
| 57 | 57 | 0.231 |
| 58 | 58 | 0.991 |
| 59 | 59 | 0.00797 |
| 6 | 6 | 0.752 |
| 60 | 60 | 0.239 |
| 61 | 61 | 0.811 |
| 62 | 62 | 0.73 |
| 63 | 63 | 0.21 |
| 64 | 64 | 0.201 |
| 65 | 65 | 0.0199 |
| 66 | 66 | 0.408 |
| 67 | 67 | 0.54 |
| 68 | 68 | 0.00372 |
| 69 | 69 | 0.0115 |
| 7 | 7 | 0.778 |
| 70 | 70 | 0.138 |
| 71 | 71 | 0.228 |
| 72 | 72 | 0.737 |
| 73 | 73 | 0.0595 |
| 74 | 74 | 0.877 |
| 75 | 75 | 0.914 |
| 76 | 76 | 0.265 |
| 77 | 77 | 0.0431 |
| 78 | 78 | 0.517 |
| 79 | 79 | 0.0209 |
| 8 | 8 | 0.0674 |
| 80 | 80 | 0.4 |
| 81 | 81 | 0.816 |
| 82 | 82 | 0.457 |
| 83 | 83 | 0.692 |
| 84 | 84 | 0.133 |
| 85 | 85 | 0.0528 |
| 86 | 86 | 0.84 |
| 87 | 87 | 0.433 |
| 88 | 88 | 0.548 |
| 89 | 89 | 0.109 |
| 9 | 9 | 0.139 |
| 90 | 90 | 0.0173 |
| 91 | 91 | 0.0826 |
| 92 | 92 | 0.262 |
| 93 | 93 | 0.6 |
| 94 | 94 | 0.462 |
| 95 | 95 | 0.228 |
| 96 | 96 | 0.997 |
| 97 | 97 | 0.434 |
| 98 | 98 | 0.4 |
| 99 | 99 | 0.0972 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12092
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000076 hepatic sinusoidal endothelial cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000215 (barrier cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000182 (hepatocyte)
0002262 (endothelial cell of sinusoid)
1000398 (endothelial cell of hepatic sinusoid)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0001007 (digestive system)
0000055 (vessel)
0001281 (hepatic sinusoid)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0000353 (parenchyma)
0003497 (abdomen blood vessel)
0003909 (sinusoid)
0005177 (trunk region element)
0002365 (exocrine gland)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0005172 (abdomen element)
0006925 (digestive gland)
0002049 (vasculature)
0002530 (gland)
0003835 (abdominal segment blood vessel)
0003513 (trunk blood vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0005173 (abdominal segment element)
0004535 (cardiovascular system)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0001280 (liver parenchyma)
0004647 (liver lobule)
0002330 (exocrine system)
0004537 (blood vasculature)
0000916 (abdomen)
0002423 (hepatobiliary system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000076 (hepatic sinusoidal endothelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)
CL:0000223 (endodermal cell)
