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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000055,UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001009,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0001638,UBERON:0001981,UBERON:0002036,UBERON:0002049,UBERON:0002050,UBERON:0002066,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003081,UBERON:0003082,UBERON:0003104,UBERON:0003914,UBERON:0003920,UBERON:0004111,UBERON:0004120,UBERON:0004290,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0004872,UBERON:0005291,UBERON:0005423,UBERON:0006965,UBERON:0007500,UBERON:0007798,UBERON:0009142
|DRA_sample_Accession=CAGE@SAMD00004772
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000359,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:0002588
|accession_numbers=CAGE;DRX008511;DRR009383;DRZ000808;DRZ002193;DRZ012158;DRZ013543
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010260,UBERON:0003920,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0010317,UBERON:0007798,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:0000359,CL:0002588
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000177
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!1.91!80.66!HAND2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.75!54.72!HOXC5;;chr4:111544219..111544240,-!p1@PITX2!1.50!30.95!PITX2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.49!29.87!SEBOX;;chr7:35293685..35293718,-!p1@TBX20!1.48!29.08!TBX20;;chr12:54402745..54402788,+!p1@HOXC8!1.47!28.79!HOXC8;;chr4:111558135..111558198,-!p2@PITX2!1.44!26.82!PITX2;;chr11:61520075..61520136,+!p1@C11orf9!1.37!46.57!C11orf9;;chr11:46299199..46299233,+!p1@CREB3L1!1.36!108.86!CREB3L1;;chr7:27224795..27224840,-!p2@HOXA11!1.32!19.75!HOXA11;;chr19:46801639..46801699,+!p1@HIF3A!1.31!19.45!HIF3A;;chr2:176969228..176969260,+!p1@HOXD11!1.26!17.39!HOXD11;;chr7:19157248..19157268,-!p1@TWIST1!1.25!46.18!TWIST1;;chr7:27224842..27224872,-!p1@HOXA11!1.25!16.60!HOXA11;;chr4:174450089..174450153,-!p2@HAND2!1.20!15.03!HAND2;;chr12:54378923..54378966,+!p1@HOXC10!1.15!13.07!HOXC10;;chr18:19749386..19749404,+!p2@GATA6!1.14!18.18!GATA6;;chr5:134369905..134369972,-!p1@PITX1!1.11!18.37!PITX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.10!19.85!CREB3L1;;chr15:83953397..83953425,-!p1@BNC1!1.08!12.77!BNC1;;chr12:54393880..54393962,+!p1@HOXC9!1.07!10.81!HOXC9;;chr12:66218598..66218645,+!p2@HMGA2!1.05!47.75!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.03!26.23!HMGA2;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.03!9.82!SEBOX;;chr7:26191809..26191890,+!p1@NFE2L3!1.00!45.00!NFE2L3;;chr5:92918919..92918942,+!p1@NR2F1!1.00!40.97!NR2F1;;chr18:19749541..19749557,+!p1@GATA6!0.99!28.39!GATA6;;chr12:54402790..54402805,+!p2@HOXC8!0.99!8.74!HOXC8;;chr12:66218836..66218888,+!p1@HMGA2!0.97!79.19!HMGA2;;chr16:86544113..86544145,+!p1@FOXF1!0.97!10.51!FOXF1;;chr9:77112244..77112262,+!p1@RORB!0.96!9.14!RORB;;chr4:174451350..174451363,-!p3@HAND2!0.96!8.15!HAND2;;chr16:86600426..86600441,+!p1@FOXC2!0.95!19.94!FOXC2;;chr5:134369879..134369898,-!p2@PITX1!0.90!6.88!PITX1;;chr6:134210243..134210257,+!p1@TCF21!0.90!6.88!TCF21;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.89!6.78!HOXC5;;chr14:62162285..62162296,+!p3@HIF1A!0.87!34.88!HIF1A;;chrY:21906594..21906622,-!p1@KDM5D!0.87!6.39!KDM5D;;chr8:49833948..49833973,-!p2@SNAI2!0.86!41.95!SNAI2;;chr7:27239703..27239715,-!p1@HOXA13!0.85!6.09!HOXA13;;chr14:62162258..62162269,+!p2@HIF1A!0.84!61.01!HIF1A;;chr12:54402729..54402743,+!p3@HOXC8!0.84!5.99!HOXC8;;chr11:113930425..113930471,+!p1@ZBTB16!0.83!8.65!ZBTB16;;chr12:54379029..54379057,+!p2@HOXC10!0.83!5.80!HOXC10;;chr7:27205136..27205164,-!p1@HOXA9!0.83!5.70!HOXA9;;chr17:46682321..46682362,-!p1@HOXB6!0.82!5.60!HOXB6;;chr15:42749722..42749739,-!p2@ZFP106!0.81!10.22!ZFP106;;chr8:49833978..49833996,-!p1@SNAI2!0.78!112.00!SNAI2;;chr5:92919100..92919135,+!p3@NR2F1!0.78!6.19!NR2F1;;chr7:27213893..27213954,-!p1@HOXA10!0.78!5.01!HOXA10;;chr4:111544254..111544270,-!p3@PITX2!0.78!5.01!PITX2;;chr12:54380404..54380433,+!p3@HOXC10!0.77!4.91!HOXC10;;chr8:48650715..48650735,-!p1@CEBPD!0.76!669.57!CEBPD;;chr7:27205106..27205134,-!p2@HOXA9!0.76!4.81!HOXA9;;chr2:176969179..176969226,+!p2@HOXD11!0.76!4.81!HOXD11;;chr4:111558118..111558133,-!p5@PITX2!0.76!4.81!PITX2;;chr2:19558373..19558392,-!p1@OSR1!0.75!13.75!OSR1;;chr1:151032860..151032918,+!p1@MLLT11!0.72!56.89!MLLT11;;chr1:170633348..170633399,+!p2@PRRX1!0.71!5.89!PRRX1;;chr2:176994408..176994492,+!p1@HOXD8!0.70!4.03!HOXD8;;chr7:27196267..27196311,-!p1@HOXA7!0.70!4.03!HOXA7;;chr2:5832508..5832524,+!p1@SOX11!0.67!3.64!SOX11;;chrY:2803415..2803468,+!p1@ZFY!0.67!3.64!ZFY;;chr5:92918894..92918912,+!p2@NR2F1!0.66!13.36!NR2F1;;chr17:59477233..59477263,+!p1@TBX2!0.66!12.48!TBX2;;chr12:66218212..66218244,+!p5@HMGA2!0.66!5.50!HMGA2;;chr5:92918956..92918969,+!p4@NR2F1!0.66!4.03!NR2F1;;chr12:54380036..54380091,+!p4@HOXC10!0.65!3.44!HOXC10;;chr15:57511609..57511651,+!p2@TCF12!0.64!6.09!TCF12;;chr10:63809013..63809041,+!p3@ARID5B!0.63!21.42!ARID5B;;chr9:35732647..35732678,+!p2@CREB3!0.63!21.03!CREB3;;chr21:30671690..30671762,+!p2@BACH1!0.63!12.87!BACH1;;chr7:19157043..19157088,-!p2@TWIST1!0.63!9.24!TWIST1;;chr7:27192185..27192209,-!p1@HOXA3!0.63!3.24!HOXA3;;chr14:62162224..62162254,+!p1@HIF1A!0.62!558.25!HIF1A;;chr19:46800289..46800327,+!p2@HIF3A!0.62!3.14!HIF3A;;chr1:158979872..158979898,+!p3@IFI16!0.61!11.00!IFI16;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.61!3.34!GLIS1;;chr5:92918768..92918783,+!p8@NR2F1!0.61!3.05!NR2F1;;chr5:72744594..72744609,-!p1@FOXD1!0.60!16.01!FOXD1;;chr3:168864315..168864339,-!p2@MECOM!0.60!5.31!MECOM;;chr17:46132044..46132080,+!p4@NFE2L1!0.60!2.95!NFE2L1;;chr17:46703687..46703740,-!p1@HOXB9!0.60!2.95!HOXB9;;chr5:72744445..72744466,-!p2@FOXD1!0.59!5.31!FOXD1;;chr11:12696071..12696086,+!p3@TEAD1!0.59!4.03!TEAD1;;chr7:1577899..1577943,+!p3@MAFK!0.59!2.85!MAFK;;chr7:27239740..27239759,-!p2@HOXA13!0.59!2.85!HOXA13;;chr6:108882109..108882173,+!p2@FOXO3!0.58!18.27!FOXO3;;chr16:8962202..8962222,-!p3@CARHSP1!0.58!5.60!CARHSP1;;chr17:46688334..46688385,-!p1@HOXB7!0.58!4.32!HOXB7;;chr17:59477275..59477286,+!p3@TBX2!0.58!3.93!TBX2;;chr17:3571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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000187;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000192;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000359;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002588;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001638;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010260
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
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|fonse_cell_line_closure=
Line 34: Line 42:
|fonse_treatment_closure=
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|has_quality=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor2.CNhs12569.11621-122B1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor2.CNhs12569.11621-122B1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor2.CNhs12569.11621-122B1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Umbilical%2520Vein%252c%2520donor2.CNhs12569.11621-122B1.hg38.nobarcode.ctss.bed.gz
|id=FF:11621-122B1
|id=FF:11621-122B1
|is_a=EFO:0002091;;FF:0000002;;FF:0000177;;FF:0000210
|is_a=EFO:0002091;;FF:0000177
|is_obsolete=
|library_id=CNhs12569
|library_id_phase_based=2:CNhs12569
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11621
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11621
|name=Smooth Muscle Cells - Umbilical Vein, donor2
|name=Smooth Muscle Cells - Umbilical Vein, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 41: Line 61:
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|profile_hcage=CNhs12569,LSID917,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=122
|rna_box=122
|rna_catalog_number=SC8025
|rna_catalog_number=SC8025
Line 56: Line 79:
|rna_weight_ug=10
|rna_weight_ug=10
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 68: Line 92:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.36780993400393e-232!GO:0005737;cytoplasm;5.77860512174952e-205!GO:0043226;organelle;4.58600185276997e-182!GO:0043229;intracellular organelle;1.10068607854964e-181!GO:0043231;intracellular membrane-bound organelle;2.96504338288332e-180!GO:0043227;membrane-bound organelle;5.34963038597809e-180!GO:0044444;cytoplasmic part;3.45253153576691e-155!GO:0044422;organelle part;2.50520258134408e-137!GO:0044446;intracellular organelle part;9.76094454789792e-136!GO:0032991;macromolecular complex;7.05275909981374e-93!GO:0044238;primary metabolic process;1.63311699721048e-87!GO:0030529;ribonucleoprotein complex;1.63311699721048e-87!GO:0044237;cellular metabolic process;1.48563765007946e-86!GO:0043170;macromolecule metabolic process;1.21545675035515e-77!GO:0005515;protein binding;1.52251429165066e-72!GO:0005739;mitochondrion;3.64391185134807e-72!GO:0043233;organelle lumen;7.03250348548735e-71!GO:0031974;membrane-enclosed lumen;7.03250348548735e-71!GO:0003723;RNA binding;8.82810732921573e-65!GO:0044428;nuclear part;3.42470565310747e-62!GO:0031090;organelle membrane;3.37235100313328e-58!GO:0005634;nucleus;1.10991392408113e-56!GO:0005840;ribosome;1.12069978601532e-56!GO:0019538;protein metabolic process;2.97257670862219e-54!GO:0006412;translation;9.25638021784238e-54!GO:0009058;biosynthetic process;1.90625559389275e-51!GO:0003735;structural constituent of ribosome;4.7287860879846e-50!GO:0044260;cellular macromolecule metabolic process;4.71515259330661e-49!GO:0044429;mitochondrial part;1.12621515862056e-48!GO:0044267;cellular protein metabolic process;3.36973324295041e-48!GO:0015031;protein transport;3.49897027509188e-46!GO:0016043;cellular component organization and biogenesis;8.69579154361735e-46!GO:0033036;macromolecule localization;1.03087546909984e-45!GO:0043234;protein complex;2.61031815590589e-45!GO:0009059;macromolecule biosynthetic process;4.05916553102284e-45!GO:0044249;cellular biosynthetic process;3.89534677841129e-44!GO:0006396;RNA processing;1.05165590020565e-43!GO:0045184;establishment of protein localization;4.08003568850157e-43!GO:0008104;protein localization;5.08424761474752e-43!GO:0033279;ribosomal subunit;5.52798230581532e-43!GO:0031967;organelle envelope;7.93119248081331e-42!GO:0031975;envelope;2.06913825112841e-41!GO:0005829;cytosol;7.36374871720868e-41!GO:0031981;nuclear lumen;4.39948825503244e-38!GO:0043283;biopolymer metabolic process;7.2566639716953e-38!GO:0010467;gene expression;1.5285624005146e-36!GO:0016071;mRNA metabolic process;7.9930233121469e-34!GO:0046907;intracellular transport;1.52242897444172e-33!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.12299154424593e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.16759500154575e-32!GO:0065003;macromolecular complex assembly;2.00194828622447e-31!GO:0005740;mitochondrial envelope;2.0400582208069e-31!GO:0008380;RNA splicing;4.25881533291209e-31!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.39732000086948e-30!GO:0031966;mitochondrial membrane;1.17620623136371e-29!GO:0006397;mRNA processing;2.16346174752416e-29!GO:0006886;intracellular protein transport;3.86781670475197e-29!GO:0019866;organelle inner membrane;2.078437152411e-28!GO:0022607;cellular component assembly;2.57027537905851e-28!GO:0006996;organelle organization and biogenesis;4.68965402391365e-27!GO:0005743;mitochondrial inner membrane;8.49942564477338e-27!GO:0044445;cytosolic part;3.45304676232404e-26!GO:0043228;non-membrane-bound organelle;1.09947257949505e-25!GO:0043232;intracellular non-membrane-bound organelle;1.09947257949505e-25!GO:0012505;endomembrane system;2.49320345033079e-25!GO:0005783;endoplasmic reticulum;3.52724253237482e-25!GO:0006457;protein folding;1.92184612364162e-24!GO:0005654;nucleoplasm;4.76928249897185e-23!GO:0006119;oxidative phosphorylation;1.34508017451553e-22!GO:0005681;spliceosome;1.73807931018591e-22!GO:0015935;small ribosomal subunit;3.49093825317492e-22!GO:0015934;large ribosomal subunit;8.60781632166797e-22!GO:0044455;mitochondrial membrane part;1.01087271077208e-21!GO:0031980;mitochondrial lumen;3.63765394611665e-21!GO:0005759;mitochondrial matrix;3.63765394611665e-21!GO:0051649;establishment of cellular localization;4.36726073449761e-21!GO:0051641;cellular localization;4.84433274250905e-21!GO:0044432;endoplasmic reticulum part;2.34781908374638e-20!GO:0048770;pigment granule;2.60592214132278e-20!GO:0042470;melanosome;2.60592214132278e-20!GO:0022618;protein-RNA complex assembly;3.24794433449489e-20!GO:0016462;pyrophosphatase activity;6.9355264621959e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.68838178237631e-20!GO:0005794;Golgi apparatus;1.19265824825707e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;1.25794913378874e-19!GO:0044451;nucleoplasm part;9.4719130446496e-19!GO:0017111;nucleoside-triphosphatase activity;9.60736582379641e-19!GO:0000166;nucleotide binding;1.0200076894164e-18!GO:0005746;mitochondrial respiratory chain;1.55014914798847e-17!GO:0016874;ligase activity;1.80999142064527e-17!GO:0008135;translation factor activity, nucleic acid binding;1.80999142064527e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.88852360787847e-17!GO:0003676;nucleic acid binding;5.34901101164278e-17!GO:0006259;DNA metabolic process;5.3751769762082e-17!GO:0051186;cofactor metabolic process;1.53503494698641e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.90176042141543e-16!GO:0006512;ubiquitin cycle;1.92045180010786e-16!GO:0044265;cellular macromolecule catabolic process;2.78288662690048e-16!GO:0005730;nucleolus;3.07944511209695e-16!GO:0000502;proteasome complex (sensu Eukaryota);4.42118984469156e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.35902853204991e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;6.49301637543426e-16!GO:0019941;modification-dependent protein catabolic process;1.31754185658913e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.31754185658913e-15!GO:0044257;cellular protein catabolic process;1.68399759066029e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.11171458145864e-15!GO:0044248;cellular catabolic process;3.04100688465572e-15!GO:0051082;unfolded protein binding;3.48317854474179e-15!GO:0050136;NADH dehydrogenase (quinone) activity;4.06601828772993e-15!GO:0003954;NADH dehydrogenase activity;4.06601828772993e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.06601828772993e-15!GO:0005761;mitochondrial ribosome;4.92286481509199e-15!GO:0000313;organellar ribosome;4.92286481509199e-15!GO:0043285;biopolymer catabolic process;6.62141436850789e-15!GO:0048193;Golgi vesicle transport;6.89532616925399e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.27611661592127e-14!GO:0009057;macromolecule catabolic process;3.56236747684502e-14!GO:0016192;vesicle-mediated transport;5.3638467431469e-14!GO:0003743;translation initiation factor activity;6.2343729726287e-14!GO:0006413;translational initiation;7.56879551817279e-14!GO:0043412;biopolymer modification;7.56879551817279e-14!GO:0008134;transcription factor binding;1.02650716839898e-13!GO:0005789;endoplasmic reticulum membrane;1.04879897536506e-13!GO:0032553;ribonucleotide binding;1.11976434380486e-13!GO:0032555;purine ribonucleotide binding;1.11976434380486e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.43675720921724e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.54754608384282e-13!GO:0042773;ATP synthesis coupled electron transport;1.54754608384282e-13!GO:0006605;protein targeting;1.8071380614726e-13!GO:0016070;RNA metabolic process;2.42525449156775e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.42525449156775e-13!GO:0045271;respiratory chain complex I;2.42525449156775e-13!GO:0005747;mitochondrial respiratory chain complex I;2.42525449156775e-13!GO:0030163;protein catabolic process;2.45759978994021e-13!GO:0017076;purine nucleotide binding;2.95031063008898e-13!GO:0006732;coenzyme metabolic process;3.4182648319933e-13!GO:0042254;ribosome biogenesis and assembly;5.18995186181855e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.96270622585184e-13!GO:0007049;cell cycle;8.22182153485902e-13!GO:0005793;ER-Golgi intermediate compartment;1.04259777429074e-12!GO:0006464;protein modification process;1.91676193259623e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.55580383142771e-11!GO:0000375;RNA splicing, via transesterification reactions;1.55580383142771e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.55580383142771e-11!GO:0005635;nuclear envelope;2.75341785134708e-11!GO:0006446;regulation of translational initiation;4.07905585406412e-11!GO:0009055;electron carrier activity;5.84000511662352e-11!GO:0031965;nuclear membrane;8.38103181371188e-11!GO:0009259;ribonucleotide metabolic process;9.12232189410944e-11!GO:0006163;purine nucleotide metabolic process;1.26515878191496e-10!GO:0003924;GTPase activity;3.20280778657354e-10!GO:0012501;programmed cell death;3.5770036651756e-10!GO:0009150;purine ribonucleotide metabolic process;3.64897527336664e-10!GO:0008565;protein transporter activity;3.97529806069705e-10!GO:0006164;purine nucleotide biosynthetic process;6.16628942592955e-10!GO:0006915;apoptosis;8.74852349687366e-10!GO:0044453;nuclear membrane part;8.8226955093683e-10!GO:0006974;response to DNA damage stimulus;8.92405006555187e-10!GO:0006399;tRNA metabolic process;9.17408808970378e-10!GO:0005524;ATP binding;9.89789271379983e-10!GO:0043687;post-translational protein modification;1.08773492177264e-09!GO:0009260;ribonucleotide biosynthetic process;1.1605015582214e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.20900040732809e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.68650801585361e-09!GO:0044431;Golgi apparatus part;1.78032688963977e-09!GO:0016604;nuclear body;1.78992657653609e-09!GO:0032559;adenyl ribonucleotide binding;1.81558996134938e-09!GO:0005788;endoplasmic reticulum lumen;1.87829460251506e-09!GO:0009060;aerobic respiration;3.29055975426658e-09!GO:0006888;ER to Golgi vesicle-mediated transport;3.29055975426658e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.59947723602431e-09!GO:0009199;ribonucleoside triphosphate metabolic process;5.11539299324538e-09!GO:0008219;cell death;5.40097736184248e-09!GO:0016265;death;5.40097736184248e-09!GO:0022402;cell cycle process;5.53375794347076e-09!GO:0030554;adenyl nucleotide binding;5.54312403471571e-09!GO:0009056;catabolic process;6.62163789040409e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;8.19817220119831e-09!GO:0009144;purine nucleoside triphosphate metabolic process;8.19817220119831e-09!GO:0009141;nucleoside triphosphate metabolic process;9.47492609250167e-09!GO:0006461;protein complex assembly;9.58043236702588e-09!GO:0000278;mitotic cell cycle;1.04638087344941e-08!GO:0003712;transcription cofactor activity;1.223982070195e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.31310057266177e-08!GO:0008639;small protein conjugating enzyme activity;1.43619046450482e-08!GO:0005768;endosome;1.65425311083186e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.69733053047127e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.69733053047127e-08!GO:0045333;cellular respiration;1.71034143733711e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.89742431408335e-08!GO:0019787;small conjugating protein ligase activity;1.89742431408335e-08!GO:0042623;ATPase activity, coupled;2.10903097596082e-08!GO:0015986;ATP synthesis coupled proton transport;2.10903097596082e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.10903097596082e-08!GO:0006913;nucleocytoplasmic transport;2.1843947899794e-08!GO:0006364;rRNA processing;2.18586887355673e-08!GO:0030120;vesicle coat;2.50571504863521e-08!GO:0030662;coated vesicle membrane;2.50571504863521e-08!GO:0004842;ubiquitin-protein ligase activity;2.52009507611608e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.72275886080541e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.72275886080541e-08!GO:0051246;regulation of protein metabolic process;2.95774566726303e-08!GO:0016853;isomerase activity;3.47459671476509e-08!GO:0016887;ATPase activity;3.78535553145755e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.98894898306604e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.98894898306604e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.98894898306604e-08!GO:0016072;rRNA metabolic process;3.99543883575888e-08!GO:0051169;nuclear transport;4.0639629478268e-08!GO:0048523;negative regulation of cellular process;4.14626927914237e-08!GO:0043038;amino acid activation;4.66919165289888e-08!GO:0006418;tRNA aminoacylation for protein translation;4.66919165289888e-08!GO:0043039;tRNA aminoacylation;4.66919165289888e-08!GO:0065002;intracellular protein transport across a membrane;4.95586092202453e-08!GO:0051188;cofactor biosynthetic process;6.35647781024634e-08!GO:0048475;coated membrane;6.36034989909295e-08!GO:0030117;membrane coat;6.36034989909295e-08!GO:0006281;DNA repair;6.59822419587066e-08!GO:0019829;cation-transporting ATPase activity;8.02128641103138e-08!GO:0006099;tricarboxylic acid cycle;8.08424612928804e-08!GO:0046356;acetyl-CoA catabolic process;8.08424612928804e-08!GO:0031988;membrane-bound vesicle;9.18693372671057e-08!GO:0016023;cytoplasmic membrane-bound vesicle;9.52146101502963e-08!GO:0007005;mitochondrion organization and biogenesis;1.14313562281411e-07!GO:0046034;ATP metabolic process;1.23525324093001e-07!GO:0016607;nuclear speck;1.39173996546105e-07!GO:0051187;cofactor catabolic process;1.41253376214643e-07!GO:0016740;transferase activity;1.41253376214643e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.47791849605456e-07!GO:0005643;nuclear pore;1.59712537905757e-07!GO:0009109;coenzyme catabolic process;1.60422327771286e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.7976657618744e-07!GO:0017038;protein import;1.87879121768172e-07!GO:0005525;GTP binding;2.01848555225266e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.12992729519254e-07!GO:0000139;Golgi membrane;2.12992729519254e-07!GO:0009117;nucleotide metabolic process;2.19360428649549e-07!GO:0006084;acetyl-CoA metabolic process;2.21546633970205e-07!GO:0016881;acid-amino acid ligase activity;2.27613884290551e-07!GO:0008026;ATP-dependent helicase activity;2.52574465507491e-07!GO:0065004;protein-DNA complex assembly;2.59800450270876e-07!GO:0016491;oxidoreductase activity;2.81684491465063e-07!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.3081448541048e-07!GO:0016859;cis-trans isomerase activity;3.68455244892468e-07!GO:0006754;ATP biosynthetic process;3.70527958481966e-07!GO:0006753;nucleoside phosphate metabolic process;3.70527958481966e-07!GO:0006323;DNA packaging;4.27024916310876e-07!GO:0051276;chromosome organization and biogenesis;4.40651617333067e-07!GO:0031982;vesicle;4.64428359449767e-07!GO:0009719;response to endogenous stimulus;5.6437811949877e-07!GO:0031410;cytoplasmic vesicle;5.76946214810631e-07!GO:0005798;Golgi-associated vesicle;6.85412961352553e-07!GO:0008654;phospholipid biosynthetic process;7.59175323605081e-07!GO:0004386;helicase activity;8.08072713298323e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.56414238504745e-07!GO:0006366;transcription from RNA polymerase II promoter;8.82616968554861e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.0790420671575e-06!GO:0048519;negative regulation of biological process;1.42050115513361e-06!GO:0045259;proton-transporting ATP synthase complex;1.79446281981113e-06!GO:0043067;regulation of programmed cell death;1.98457046507253e-06!GO:0046930;pore complex;1.98457046507253e-06!GO:0032561;guanyl ribonucleotide binding;2.13270776705037e-06!GO:0019001;guanyl nucleotide binding;2.13270776705037e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.21833028016385e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.21833028016385e-06!GO:0042981;regulation of apoptosis;2.52488433811712e-06!GO:0006752;group transfer coenzyme metabolic process;2.73079349522748e-06!GO:0000074;regulation of progression through cell cycle;2.94640129076733e-06!GO:0050794;regulation of cellular process;3.11130578519312e-06!GO:0050657;nucleic acid transport;3.27761247514952e-06!GO:0051236;establishment of RNA localization;3.27761247514952e-06!GO:0050658;RNA transport;3.27761247514952e-06!GO:0045454;cell redox homeostasis;3.74471732070747e-06!GO:0051726;regulation of cell cycle;3.78938064672556e-06!GO:0006403;RNA localization;3.88476448214672e-06!GO:0009108;coenzyme biosynthetic process;4.2231394336744e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.44181307885267e-06!GO:0032446;protein modification by small protein conjugation;4.5985444747841e-06!GO:0015980;energy derivation by oxidation of organic compounds;4.61757808933576e-06!GO:0006333;chromatin assembly or disassembly;5.35826988186556e-06!GO:0043069;negative regulation of programmed cell death;5.62473592830329e-06!GO:0005694;chromosome;5.72945719883594e-06!GO:0006613;cotranslational protein targeting to membrane;5.91449744429001e-06!GO:0006916;anti-apoptosis;6.39279259186379e-06!GO:0016567;protein ubiquitination;6.97556540794518e-06!GO:0030133;transport vesicle;7.39821280053165e-06!GO:0005770;late endosome;9.63371316990158e-06!GO:0016787;hydrolase activity;9.92777014964449e-06!GO:0043066;negative regulation of apoptosis;1.03130103233909e-05!GO:0005667;transcription factor complex;1.11549477170605e-05!GO:0044440;endosomal part;1.1485465391316e-05!GO:0010008;endosome membrane;1.1485465391316e-05!GO:0043566;structure-specific DNA binding;1.17548397888848e-05!GO:0022403;cell cycle phase;1.23484859410491e-05!GO:0003697;single-stranded DNA binding;1.27323683930158e-05!GO:0000245;spliceosome assembly;1.29070299232403e-05!GO:0004298;threonine endopeptidase activity;1.39800669933504e-05!GO:0005762;mitochondrial large ribosomal subunit;1.39800669933504e-05!GO:0000315;organellar large ribosomal subunit;1.39800669933504e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.41727166038369e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.72976632110284e-05!GO:0043623;cellular protein complex assembly;1.73148646618636e-05!GO:0003714;transcription corepressor activity;1.81840307670223e-05!GO:0051301;cell division;2.01705652726409e-05!GO:0031252;leading edge;2.09579533488559e-05!GO:0000151;ubiquitin ligase complex;2.47011384647156e-05!GO:0051789;response to protein stimulus;2.69939364180539e-05!GO:0006986;response to unfolded protein;2.69939364180539e-05!GO:0005905;coated pit;2.72886736309785e-05!GO:0006091;generation of precursor metabolites and energy;3.06494649888687e-05!GO:0005773;vacuole;3.07041767626833e-05!GO:0016126;sterol biosynthetic process;3.27078887759098e-05!GO:0006793;phosphorus metabolic process;3.39549270438712e-05!GO:0006796;phosphate metabolic process;3.39549270438712e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.39879384790968e-05!GO:0000087;M phase of mitotic cell cycle;3.42465846928213e-05!GO:0006260;DNA replication;3.54129000645349e-05!GO:0030867;rough endoplasmic reticulum membrane;3.74601049153083e-05!GO:0044427;chromosomal part;3.9933256081672e-05!GO:0031324;negative regulation of cellular metabolic process;4.28215165878329e-05!GO:0007067;mitosis;4.6767252821316e-05!GO:0019843;rRNA binding;4.98675292302627e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.00121524287487e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;5.26868778339053e-05!GO:0000785;chromatin;5.3125319164404e-05!GO:0006334;nucleosome assembly;5.38817862738417e-05!GO:0016310;phosphorylation;5.51095775644001e-05!GO:0031968;organelle outer membrane;6.0017942849467e-05!GO:0043021;ribonucleoprotein binding;6.00312839940583e-05!GO:0005769;early endosome;6.0489359366699e-05!GO:0016564;transcription repressor activity;6.14485078989477e-05!GO:0016779;nucleotidyltransferase activity;6.78301068305319e-05!GO:0033116;ER-Golgi intermediate compartment membrane;7.0824426265191e-05!GO:0019867;outer membrane;7.43534971126744e-05!GO:0003724;RNA helicase activity;7.91772313359144e-05!GO:0051028;mRNA transport;8.3948737784391e-05!GO:0015630;microtubule cytoskeleton;9.75902859640186e-05!GO:0051170;nuclear import;0.000102823289221037!GO:0008610;lipid biosynthetic process;0.000115545707060478!GO:0005791;rough endoplasmic reticulum;0.000115727005540067!GO:0000314;organellar small ribosomal subunit;0.000115727005540067!GO:0005763;mitochondrial small ribosomal subunit;0.000115727005540067!GO:0044262;cellular carbohydrate metabolic process;0.000116692471660152!GO:0051329;interphase of mitotic cell cycle;0.000122805294917851!GO:0050789;regulation of biological process;0.000128780820294164!GO:0031497;chromatin assembly;0.000129559425669007!GO:0030036;actin cytoskeleton organization and biogenesis;0.000130216129804354!GO:0016563;transcription activator activity;0.000139138480503994!GO:0046474;glycerophospholipid biosynthetic process;0.000147559427284763!GO:0008361;regulation of cell size;0.000151982836190703!GO:0006606;protein import into nucleus;0.000151982836190703!GO:0006612;protein targeting to membrane;0.00018042212802315!GO:0009892;negative regulation of metabolic process;0.000199402052532415!GO:0045786;negative regulation of progression through cell cycle;0.000208486908347963!GO:0005885;Arp2/3 protein complex;0.000234138703840113!GO:0003713;transcription coactivator activity;0.000238141606741181!GO:0016568;chromatin modification;0.000239072472700376!GO:0046467;membrane lipid biosynthetic process;0.000262266913765164!GO:0000323;lytic vacuole;0.000263217592925305!GO:0005764;lysosome;0.000263217592925305!GO:0003899;DNA-directed RNA polymerase activity;0.000272707112274332!GO:0016049;cell growth;0.000273046610651422!GO:0008250;oligosaccharyl transferase complex;0.00027313994890692!GO:0030663;COPI coated vesicle membrane;0.000284198152853564!GO:0030126;COPI vesicle coat;0.000284198152853564!GO:0005048;signal sequence binding;0.000297930585906737!GO:0019899;enzyme binding;0.000299515110921193!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000300429381660631!GO:0006695;cholesterol biosynthetic process;0.000303160261912261!GO:0004576;oligosaccharyl transferase activity;0.000303160261912261!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000328230240107741!GO:0005741;mitochondrial outer membrane;0.000336373370329678!GO:0031072;heat shock protein binding;0.000339590703551824!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000342592398546375!GO:0009165;nucleotide biosynthetic process;0.000375619786877087!GO:0051325;interphase;0.000402067128852292!GO:0005813;centrosome;0.000418104791504824!GO:0030176;integral to endoplasmic reticulum membrane;0.000454927684545573!GO:0043681;protein import into mitochondrion;0.000504726828012606!GO:0018196;peptidyl-asparagine modification;0.000526628271636305!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000526628271636305!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000540520365837749!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000543179972294784!GO:0030137;COPI-coated vesicle;0.000571136631036587!GO:0006520;amino acid metabolic process;0.000584021998069206!GO:0006082;organic acid metabolic process;0.000606454428264269!GO:0043284;biopolymer biosynthetic process;0.000648062562686346!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000663673266490887!GO:0006626;protein targeting to mitochondrion;0.000691622307472946!GO:0019752;carboxylic acid metabolic process;0.000697087560657269!GO:0051920;peroxiredoxin activity;0.000745713502152017!GO:0051427;hormone receptor binding;0.000760377251500489!GO:0001558;regulation of cell growth;0.000793584280673457!GO:0030029;actin filament-based process;0.000803743246113763!GO:0048471;perinuclear region of cytoplasm;0.000818748526364195!GO:0006414;translational elongation;0.000866666680860951!GO:0007264;small GTPase mediated signal transduction;0.000878455528391914!GO:0042802;identical protein binding;0.000923468570605678!GO:0005815;microtubule organizing center;0.000923836043752072!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000926755020913608!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00102592987328359!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0010323156225791!GO:0030659;cytoplasmic vesicle membrane;0.00103255399141074!GO:0008186;RNA-dependent ATPase activity;0.00105676755896548!GO:0046489;phosphoinositide biosynthetic process;0.00108522452452551!GO:0007010;cytoskeleton organization and biogenesis;0.00111892245278644!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00118519714555814!GO:0015399;primary active transmembrane transporter activity;0.00118519714555814!GO:0016044;membrane organization and biogenesis;0.00120023009106752!GO:0006839;mitochondrial transport;0.00135164540005033!GO:0035257;nuclear hormone receptor binding;0.00141542953185446!GO:0048500;signal recognition particle;0.0014180743519979!GO:0006891;intra-Golgi vesicle-mediated transport;0.00143595172602541!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00146216067819795!GO:0007243;protein kinase cascade;0.00146967668548465!GO:0030658;transport vesicle membrane;0.00153012094047832!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00155862306320103!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00155862306320103!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00155862306320103!GO:0051252;regulation of RNA metabolic process;0.00160477430047143!GO:0006383;transcription from RNA polymerase III promoter;0.00181917791980243!GO:0008092;cytoskeletal protein binding;0.00190474467300079!GO:0016481;negative regulation of transcription;0.00194403327047762!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00194403327047762!GO:0046483;heterocycle metabolic process;0.00200873441330592!GO:0051087;chaperone binding;0.00201410176564551!GO:0016363;nuclear matrix;0.00201677921969168!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00204878460747215!GO:0007050;cell cycle arrest;0.00207034642753379!GO:0007006;mitochondrial membrane organization and biogenesis;0.00215561655345493!GO:0000279;M phase;0.00231484319842715!GO:0030134;ER to Golgi transport vesicle;0.00233086417651849!GO:0008033;tRNA processing;0.0023723971206554!GO:0000049;tRNA binding;0.00237947742192293!GO:0030118;clathrin coat;0.00246825697688279!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00252218733854939!GO:0008180;signalosome;0.00253950320639741!GO:0004004;ATP-dependent RNA helicase activity;0.00255477504211494!GO:0044452;nucleolar part;0.00258553456295622!GO:0044433;cytoplasmic vesicle part;0.0026301396245011!GO:0003729;mRNA binding;0.0026301396245011!GO:0043488;regulation of mRNA stability;0.00267267680449155!GO:0043487;regulation of RNA stability;0.00267267680449155!GO:0051168;nuclear export;0.0027845801316593!GO:0006740;NADPH regeneration;0.0029430436662401!GO:0006098;pentose-phosphate shunt;0.0029430436662401!GO:0008047;enzyme activator activity;0.00298508149779431!GO:0019222;regulation of metabolic process;0.00302540396719602!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0031088875329626!GO:0045047;protein targeting to ER;0.0031088875329626!GO:0030132;clathrin coat of coated pit;0.0031357978835655!GO:0006650;glycerophospholipid metabolic process;0.00330848582224896!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00331956726197387!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00331956726197387!GO:0008312;7S RNA binding;0.00340091526367532!GO:0030660;Golgi-associated vesicle membrane;0.00350408807173282!GO:0012506;vesicle membrane;0.00372602976460318!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00391790504304393!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00393642618376494!GO:0015992;proton transport;0.00398252950868055!GO:0030127;COPII vesicle coat;0.00398968480044289!GO:0012507;ER to Golgi transport vesicle membrane;0.00398968480044289!GO:0000059;protein import into nucleus, docking;0.00402667183067381!GO:0003746;translation elongation factor activity;0.00420510630110798!GO:0008652;amino acid biosynthetic process;0.0042324113180574!GO:0006818;hydrogen transport;0.00429617340026342!GO:0009112;nucleobase metabolic process;0.00429617340026342!GO:0048522;positive regulation of cellular process;0.00446436660382989!GO:0051287;NAD binding;0.00468143468472609!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00482585743064454!GO:0015002;heme-copper terminal oxidase activity;0.00482585743064454!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00482585743064454!GO:0004129;cytochrome-c oxidase activity;0.00482585743064454!GO:0006352;transcription initiation;0.00497949933179917!GO:0030880;RNA polymerase complex;0.00518533082613565!GO:0016408;C-acyltransferase activity;0.00518533082613565!GO:0004177;aminopeptidase activity;0.00520274548478813!GO:0003690;double-stranded DNA binding;0.0052447363133514!GO:0030145;manganese ion binding;0.00532992028658509!GO:0003711;transcription elongation regulator activity;0.00549855312368113!GO:0065009;regulation of a molecular function;0.00550334955106905!GO:0000082;G1/S transition of mitotic cell cycle;0.0055443023298459!GO:0031901;early endosome membrane;0.0056265569386677!GO:0048487;beta-tubulin binding;0.00568670777138612!GO:0006509;membrane protein ectodomain proteolysis;0.00571779073029797!GO:0033619;membrane protein proteolysis;0.00571779073029797!GO:0051128;regulation of cellular component organization and biogenesis;0.00579601582073315!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00681722328433871!GO:0015631;tubulin binding;0.00714357676136389!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00727840823204622!GO:0006402;mRNA catabolic process;0.00733157204056782!GO:0005869;dynactin complex;0.00735986661792341!GO:0045045;secretory pathway;0.00748229850632838!GO:0006807;nitrogen compound metabolic process;0.00754347327578118!GO:0003756;protein disulfide isomerase activity;0.007596963704145!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.007596963704145!GO:0008139;nuclear localization sequence binding;0.00762815811752392!GO:0008632;apoptotic program;0.00787403998388481!GO:0016272;prefoldin complex;0.00808030276540693!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00814840370596965!GO:0006497;protein amino acid lipidation;0.0083324089478577!GO:0022890;inorganic cation transmembrane transporter activity;0.00843644982696048!GO:0006595;polyamine metabolic process;0.00854630426918909!GO:0016197;endosome transport;0.0085713547308897!GO:0031301;integral to organelle membrane;0.00858630180133871!GO:0030521;androgen receptor signaling pathway;0.00891938862100848!GO:0030027;lamellipodium;0.00894964753484236!GO:0030384;phosphoinositide metabolic process;0.00902698634177741!GO:0043022;ribosome binding;0.00905713313045781!GO:0005862;muscle thin filament tropomyosin;0.00961798475402889!GO:0006519;amino acid and derivative metabolic process;0.00973999497039217!GO:0001726;ruffle;0.0100327669283193!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0103491744520768!GO:0005684;U2-dependent spliceosome;0.0105909097326646!GO:0017166;vinculin binding;0.0106454933228021!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0106454933228021!GO:0000428;DNA-directed RNA polymerase complex;0.0106454933228021!GO:0033673;negative regulation of kinase activity;0.0106454933228021!GO:0006469;negative regulation of protein kinase activity;0.0106454933228021!GO:0000786;nucleosome;0.0106819632758674!GO:0003684;damaged DNA binding;0.0107245097566022!GO:0007021;tubulin folding;0.0108511920896039!GO:0051539;4 iron, 4 sulfur cluster binding;0.0109456206964591!GO:0051101;regulation of DNA binding;0.0110311652785279!GO:0006739;NADP metabolic process;0.0111978104591221!GO:0000339;RNA cap binding;0.0111978104591221!GO:0031902;late endosome membrane;0.0113890803498682!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0113890803498682!GO:0030119;AP-type membrane coat adaptor complex;0.0114741926878355!GO:0009308;amine metabolic process;0.0114841528641465!GO:0031418;L-ascorbic acid binding;0.012033903060869!GO:0009116;nucleoside metabolic process;0.0122342220504028!GO:0006401;RNA catabolic process;0.0125152059454735!GO:0000096;sulfur amino acid metabolic process;0.0125958194044897!GO:0051098;regulation of binding;0.0127615604986521!GO:0040008;regulation of growth;0.0130453256640258!GO:0031543;peptidyl-proline dioxygenase activity;0.0131029795763169!GO:0016860;intramolecular oxidoreductase activity;0.0131057047516348!GO:0050662;coenzyme binding;0.0131615356786319!GO:0043492;ATPase activity, coupled to movement of substances;0.0133224301129841!GO:0006778;porphyrin metabolic process;0.01340810976666!GO:0033013;tetrapyrrole metabolic process;0.01340810976666!GO:0006007;glucose catabolic process;0.0139551989573828!GO:0051348;negative regulation of transferase activity;0.0139858518569312!GO:0005832;chaperonin-containing T-complex;0.0140222026759092!GO:0006506;GPI anchor biosynthetic process;0.0141272103580515!GO:0019798;procollagen-proline dioxygenase activity;0.0144633183305851!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0144633183305851!GO:0016125;sterol metabolic process;0.0146433934068089!GO:0016251;general RNA polymerase II transcription factor activity;0.0149336873750307!GO:0006643;membrane lipid metabolic process;0.0150140446713682!GO:0033559;unsaturated fatty acid metabolic process;0.0152664418743964!GO:0006636;unsaturated fatty acid biosynthetic process;0.0152664418743964!GO:0042158;lipoprotein biosynthetic process;0.01537006396021!GO:0048468;cell development;0.01537006396021!GO:0007040;lysosome organization and biogenesis;0.015456823215397!GO:0006354;RNA elongation;0.0157374757051051!GO:0005637;nuclear inner membrane;0.0158850688579866!GO:0030041;actin filament polymerization;0.0161386593660128!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0161993580016907!GO:0035258;steroid hormone receptor binding;0.0164501034259849!GO:0006144;purine base metabolic process;0.0164501034259849!GO:0000209;protein polyubiquitination;0.016530086967299!GO:0005586;collagen type III;0.0167444604631467!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0169370338753468!GO:0045892;negative regulation of transcription, DNA-dependent;0.0173468590114441!GO:0006417;regulation of translation;0.0173629374654761!GO:0031625;ubiquitin protein ligase binding;0.0174418634971146!GO:0005819;spindle;0.0182350590805206!GO:0007034;vacuolar transport;0.0184695629172163!GO:0030125;clathrin vesicle coat;0.0186187575314437!GO:0030665;clathrin coated vesicle membrane;0.0186187575314437!GO:0005096;GTPase activator activity;0.0186187575314437!GO:0016407;acetyltransferase activity;0.0187172864633657!GO:0031529;ruffle organization and biogenesis;0.0189929447245316!GO:0008637;apoptotic mitochondrial changes;0.0190733864670551!GO:0045936;negative regulation of phosphate metabolic process;0.0190733864670551!GO:0006289;nucleotide-excision repair;0.0191836944701922!GO:0006505;GPI anchor metabolic process;0.020122273306585!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0202749575999798!GO:0030131;clathrin adaptor complex;0.0203257998367875!GO:0030833;regulation of actin filament polymerization;0.0204922468695451!GO:0009967;positive regulation of signal transduction;0.0212123591041528!GO:0032984;macromolecular complex disassembly;0.0212710094393262!GO:0006892;post-Golgi vesicle-mediated transport;0.0214490632130261!GO:0005801;cis-Golgi network;0.0219917122849529!GO:0005975;carbohydrate metabolic process;0.0222296722288423!GO:0008168;methyltransferase activity;0.0227965290511004!GO:0006611;protein export from nucleus;0.0227965290511004!GO:0015036;disulfide oxidoreductase activity;0.022827421691009!GO:0022884;macromolecule transmembrane transporter activity;0.0231153275749493!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0231153275749493!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0243654771209833!GO:0033043;regulation of organelle organization and biogenesis;0.0243654771209833!GO:0006302;double-strand break repair;0.0243654771209833!GO:0006779;porphyrin biosynthetic process;0.0243773353821502!GO:0033014;tetrapyrrole biosynthetic process;0.0243773353821502!GO:0031124;mRNA 3'-end processing;0.0244889183379876!GO:0030032;lamellipodium biogenesis;0.0248867753643104!GO:0065007;biological regulation;0.0252142095333476!GO:0031970;organelle envelope lumen;0.0252231533324097!GO:0006066;alcohol metabolic process;0.0254158239486705!GO:0008320;protein transmembrane transporter activity;0.0257395249717908!GO:0051540;metal cluster binding;0.0258281018731197!GO:0051536;iron-sulfur cluster binding;0.0258281018731197!GO:0008097;5S rRNA binding;0.0260621635031956!GO:0045792;negative regulation of cell size;0.0262191069412065!GO:0022408;negative regulation of cell-cell adhesion;0.0262822391560883!GO:0006979;response to oxidative stress;0.0268844612096612!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0268844612096612!GO:0008154;actin polymerization and/or depolymerization;0.0268844612096612!GO:0016741;transferase activity, transferring one-carbon groups;0.0272518855566141!GO:0008286;insulin receptor signaling pathway;0.0273208018465651!GO:0006644;phospholipid metabolic process;0.0274434616658691!GO:0001872;zymosan binding;0.0279449813988637!GO:0001878;response to yeast;0.0279449813988637!GO:0032940;secretion by cell;0.0281861246759814!GO:0005774;vacuolar membrane;0.0282576629283634!GO:0008538;proteasome activator activity;0.0283403731863433!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0284701326817889!GO:0048037;cofactor binding;0.029147347115661!GO:0031371;ubiquitin conjugating enzyme complex;0.0291898340901!GO:0042168;heme metabolic process;0.0299443803566633!GO:0003923;GPI-anchor transamidase activity;0.0300453039858233!GO:0016255;attachment of GPI anchor to protein;0.0300453039858233!GO:0042765;GPI-anchor transamidase complex;0.0300453039858233!GO:0001952;regulation of cell-matrix adhesion;0.0303966948551849!GO:0030308;negative regulation of cell growth;0.0310081604791844!GO:0043624;cellular protein complex disassembly;0.0311879527593326!GO:0032906;transforming growth factor-beta2 production;0.0312861159551425!GO:0032909;regulation of transforming growth factor-beta2 production;0.0312861159551425!GO:0035035;histone acetyltransferase binding;0.0314723163383121!GO:0007033;vacuole organization and biogenesis;0.0316190418631828!GO:0009303;rRNA transcription;0.0322274903933911!GO:0005938;cell cortex;0.0324075948599464!GO:0006518;peptide metabolic process;0.0341187673805986!GO:0003678;DNA helicase activity;0.0343096850723216!GO:0050681;androgen receptor binding;0.0343434890583809!GO:0006897;endocytosis;0.0345899309909931!GO:0010324;membrane invagination;0.0345899309909931!GO:0008022;protein C-terminus binding;0.0346685748250911!GO:0007030;Golgi organization and biogenesis;0.0347060835282422!GO:0019318;hexose metabolic process;0.0351086002292601!GO:0005099;Ras GTPase activator activity;0.0351436916773753!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0354762872746608!GO:0030508;thiol-disulfide exchange intermediate activity;0.035971463639174!GO:0000075;cell cycle checkpoint;0.0364130380165583!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0364130380165583!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0364130380165583!GO:0050811;GABA receptor binding;0.0366007328600432!GO:0032507;maintenance of cellular protein localization;0.0367682302305516!GO:0005669;transcription factor TFIID complex;0.0369668413099761!GO:0006984;ER-nuclear signaling pathway;0.0371733124273502!GO:0043241;protein complex disassembly;0.0375506561152959!GO:0030433;ER-associated protein catabolic process;0.0379373372350032!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0379373372350032!GO:0006790;sulfur metabolic process;0.0379673676091731!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0380404889080245!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0381526194976968!GO:0004674;protein serine/threonine kinase activity;0.0382462220624543!GO:0006261;DNA-dependent DNA replication;0.0386001383228048!GO:0042326;negative regulation of phosphorylation;0.0391734170446048!GO:0003682;chromatin binding;0.0392776513982518!GO:0006378;mRNA polyadenylation;0.0396976336793738!GO:0006458;'de novo' protein folding;0.0398157350872958!GO:0051084;'de novo' posttranslational protein folding;0.0398157350872958!GO:0016584;nucleosome positioning;0.0401462224474812!GO:0005758;mitochondrial intermembrane space;0.0402167258966575!GO:0006220;pyrimidine nucleotide metabolic process;0.0402746281093096!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0410473952616754!GO:0009119;ribonucleoside metabolic process;0.041339752588176!GO:0009225;nucleotide-sugar metabolic process;0.0417179630459566!GO:0051235;maintenance of localization;0.0421409972335035!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0423719899891397!GO:0005996;monosaccharide metabolic process;0.0426587941078663!GO:0009451;RNA modification;0.0429604877034951!GO:0030911;TPR domain binding;0.0433862970920676!GO:0004448;isocitrate dehydrogenase activity;0.0442066427994343!GO:0046426;negative regulation of JAK-STAT cascade;0.0442852668295113!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0447029287059784!GO:0006405;RNA export from nucleus;0.0447495197742918!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0456527710231223!GO:0016453;C-acetyltransferase activity;0.0458409144672369!GO:0008234;cysteine-type peptidase activity;0.0458761901358414!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0461433133863286!GO:0010257;NADH dehydrogenase complex assembly;0.0461433133863286!GO:0033108;mitochondrial respiratory chain complex assembly;0.0461433133863286!GO:0031272;regulation of pseudopodium formation;0.0465041793565706!GO:0031269;pseudopodium formation;0.0465041793565706!GO:0031344;regulation of cell projection organization and biogenesis;0.0465041793565706!GO:0031268;pseudopodium organization and biogenesis;0.0465041793565706!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0465041793565706!GO:0031274;positive regulation of pseudopodium formation;0.0465041793565706!GO:0005784;translocon complex;0.0465951196667637!GO:0051059;NF-kappaB binding;0.0469766196588541!GO:0006541;glutamine metabolic process;0.0471119923726674!GO:0001953;negative regulation of cell-matrix adhesion;0.0475466807630931!GO:0022406;membrane docking;0.0475466807630931!GO:0048278;vesicle docking;0.0475466807630931!GO:0008299;isoprenoid biosynthetic process;0.0478645745421899!GO:0043433;negative regulation of transcription factor activity;0.0496460717162165
|sample_id=11621
|sample_id=11621
|sample_note=
|sample_note=
Line 75: Line 100:
|sample_tissue=umbilical vein
|sample_tissue=umbilical vein
|top_motifs=TAL1_TCF{3,4,12}:1.67960899586;HOX{A5,B5}:1.60620695494;EN1,2:1.4178825783;GLI1..3:1.38047365048;HMGA1,2:1.31847257906;NKX3-1:1.20183592819;NR3C1:1.18262791888;HSF1,2:1.16924136282;MAFB:1.08006856362;NR6A1:1.05316249264;TFAP4:0.914880954835;SRF:0.887994962427;ZNF148:0.86711862175;RXR{A,B,G}:0.865156925604;TEAD1:0.848152025458;ATF6:0.844072667303;ADNP_IRX_SIX_ZHX:0.818670090105;GTF2A1,2:0.776980371728;PAX4:0.755063803413;ZNF238:0.750703394696;LHX3,4:0.746559073201;GZF1:0.683910621529;TP53:0.663967270483;TBX4,5:0.659845437659;SOX17:0.62712257607;NKX2-2,8:0.610869338295;HOX{A6,A7,B6,B7}:0.596332225672;PAX8:0.574833738595;PPARG:0.487614862731;HAND1,2:0.472689193407;AIRE:0.455832347833;MAZ:0.417449766109;DBP:0.412645116307;GFI1B:0.41006493765;HLF:0.370017177153;TBP:0.369756954141;CEBPA,B_DDIT3:0.36681223902;FOXD3:0.362716679435;UFEwm:0.347323305472;EVI1:0.34404000059;ZNF384:0.338115936855;PAX5:0.317179344417;NFATC1..3:0.316041273337;ESR1:0.306032588683;SOX5:0.301276640569;SMAD1..7,9:0.3012107037;CDX1,2,4:0.277248325146;POU5F1:0.275599786841;TLX1..3_NFIC{dimer}:0.273782185458;MYBL2:0.271194211714;NR5A1,2:0.260135625188;NFIX:0.251602319193;GTF2I:0.251168326322;EBF1:0.249843043736;XBP1:0.22881515558;IKZF1:0.227933086045;HIF1A:0.224887332438;RXRA_VDR{dimer}:0.207488465415;NKX2-1,4:0.192842046027;KLF4:0.17038265905;NFE2L2:0.168641550491;PDX1:0.168524619506;CDC5L:0.165862631648;NFE2L1:0.157826812128;ONECUT1,2:0.157177814641;ZBTB6:0.156322679939;PRRX1,2:0.153601904444;TEF:0.148347193065;HNF1A:0.147903596249;FOXA2:0.127795049545;ZNF423:0.127094422082;HES1:0.120125327923;TFDP1:0.119549758965;SP1:0.117916434101;NANOG{mouse}:0.116513328137;CRX:0.112882601366;ESRRA:0.111790781929;FOX{I1,J2}:0.109831302382;LEF1_TCF7_TCF7L1,2:0.0984186322058;FOXL1:0.094950155122;MTE{core}:0.0894176303764;T:0.0890428897196;PATZ1:0.0517009196583;PRDM1:0.0453269899529;TFCP2:0.0406884583648;ARID5B:0.0404250451508;ALX4:0.0134071939329;HNF4A_NR2F1,2:0.00321620358431;FOSL2:-0.00177497004559;TOPORS:-0.00538527165544;FOXP3:-0.00706440236448;ZIC1..3:-0.0146702082223;XCPE1{core}:-0.0310773145851;ZNF143:-0.034666858602;MZF1:-0.0376452554114;ALX1:-0.0406063412121;NANOG:-0.0427562901574;bHLH_family:-0.0452525852028;ELK1,4_GABP{A,B1}:-0.0482765121768;TFAP2{A,C}:-0.0554308703063;REST:-0.0577120560968;YY1:-0.060611857195;NFY{A,B,C}:-0.0634520689887;FOS_FOS{B,L1}_JUN{B,D}:-0.0674665921944;BACH2:-0.072011288692;MEF2{A,B,C,D}:-0.0751144381982;AHR_ARNT_ARNT2:-0.0797539472629;NFE2:-0.0885667324377;FOX{F1,F2,J1}:-0.0995021464292;PAX6:-0.106588589011;SPZ1:-0.109640663769;TLX2:-0.110394099921;RUNX1..3:-0.113070774334;NKX3-2:-0.12311488955;HIC1:-0.133184858752;GATA6:-0.137610468288;TFAP2B:-0.141548000977;HOX{A4,D4}:-0.14526810903;POU1F1:-0.145428730682;HOXA9_MEIS1:-0.153995627799;NKX2-3_NKX2-5:-0.160505883669;RFX1:-0.161851458306;ATF2:-0.169295539252;AR:-0.179064729101;PBX1:-0.17967234864;STAT1,3:-0.193680635067;JUN:-0.195547497715;SOX2:-0.196184132104;NFKB1_REL_RELA:-0.199549593064;OCT4_SOX2{dimer}:-0.202049333153;GCM1,2:-0.202624042476;CUX2:-0.203163350398;DMAP1_NCOR{1,2}_SMARC:-0.218906970422;MYB:-0.22222628813;NR1H4:-0.231243661157;GATA4:-0.269922471953;ELF1,2,4:-0.272107175591;NRF1:-0.272477498236;STAT2,4,6:-0.290991919603;GFI1:-0.318338619273;NFIL3:-0.330637638896;RREB1:-0.334115981215;NHLH1,2:-0.337000598237;PITX1..3:-0.359080198759;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.36790783012;EGR1..3:-0.36790836637;MYFfamily:-0.374543030699;POU2F1..3:-0.386171282852;POU6F1:-0.393844967795;SNAI1..3:-0.396755159616;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.403854941477;STAT5{A,B}:-0.413650567437;FOXM1:-0.422780507858;ZFP161:-0.440659737321;RORA:-0.448683873597;ZBTB16:-0.449887418338;IRF7:-0.469209257718;FOXN1:-0.478373327747;IRF1,2:-0.483698785254;ETS1,2:-0.493944206315;HMX1:-0.500828675555;PAX2:-0.504166370627;SPI1:-0.516810151822;SOX{8,9,10}:-0.518075941434;VSX1,2:-0.52462234895;MED-1{core}:-0.528549537896;ATF4:-0.533845259182;POU3F1..4:-0.546104949863;LMO2:-0.575976051494;TGIF1:-0.580523356255;SPIB:-0.580796997574;PAX1,9:-0.596015431261;SREBF1,2:-0.596600532219;ATF5_CREB3:-0.61919650071;E2F1..5:-0.622227764405;MTF1:-0.627405026352;FOXQ1:-0.673451551115;BPTF:-0.678550969467;FOX{D1,D2}:-0.69158809377;ZEB1:-0.709489882317;BREu{core}:-0.734165203574;NKX6-1,2:-0.745619115063;HBP1_HMGB_SSRP1_UBTF:-0.806150873798;RFX2..5_RFXANK_RFXAP:-0.815552288916;PAX3,7:-0.816169106734;FOXP1:-0.831847477302;FOXO1,3,4:-0.853728788576;EP300:-0.86087931339;CREB1:-0.897856776713;MYOD1:-0.964282494609;IKZF2:-0.996121360951;RBPJ:-1.07251496507
|top_motifs=TAL1_TCF{3,4,12}:1.67960899586;HOX{A5,B5}:1.60620695494;EN1,2:1.4178825783;GLI1..3:1.38047365048;HMGA1,2:1.31847257906;NKX3-1:1.20183592819;NR3C1:1.18262791888;HSF1,2:1.16924136282;MAFB:1.08006856362;NR6A1:1.05316249264;TFAP4:0.914880954835;SRF:0.887994962427;ZNF148:0.86711862175;RXR{A,B,G}:0.865156925604;TEAD1:0.848152025458;ATF6:0.844072667303;ADNP_IRX_SIX_ZHX:0.818670090105;GTF2A1,2:0.776980371728;PAX4:0.755063803413;ZNF238:0.750703394696;LHX3,4:0.746559073201;GZF1:0.683910621529;TP53:0.663967270483;TBX4,5:0.659845437659;SOX17:0.62712257607;NKX2-2,8:0.610869338295;HOX{A6,A7,B6,B7}:0.596332225672;PAX8:0.574833738595;PPARG:0.487614862731;HAND1,2:0.472689193407;AIRE:0.455832347833;MAZ:0.417449766109;DBP:0.412645116307;GFI1B:0.41006493765;HLF:0.370017177153;TBP:0.369756954141;CEBPA,B_DDIT3:0.36681223902;FOXD3:0.362716679435;UFEwm:0.347323305472;EVI1:0.34404000059;ZNF384:0.338115936855;PAX5:0.317179344417;NFATC1..3:0.316041273337;ESR1:0.306032588683;SOX5:0.301276640569;SMAD1..7,9:0.3012107037;CDX1,2,4:0.277248325146;POU5F1:0.275599786841;TLX1..3_NFIC{dimer}:0.273782185458;MYBL2:0.271194211714;NR5A1,2:0.260135625188;NFIX:0.251602319193;GTF2I:0.251168326322;EBF1:0.249843043736;XBP1:0.22881515558;IKZF1:0.227933086045;HIF1A:0.224887332438;RXRA_VDR{dimer}:0.207488465415;NKX2-1,4:0.192842046027;KLF4:0.17038265905;NFE2L2:0.168641550491;PDX1:0.168524619506;CDC5L:0.165862631648;NFE2L1:0.157826812128;ONECUT1,2:0.157177814641;ZBTB6:0.156322679939;PRRX1,2:0.153601904444;TEF:0.148347193065;HNF1A:0.147903596249;FOXA2:0.127795049545;ZNF423:0.127094422082;HES1:0.120125327923;TFDP1:0.119549758965;SP1:0.117916434101;NANOG{mouse}:0.116513328137;CRX:0.112882601366;ESRRA:0.111790781929;FOX{I1,J2}:0.109831302382;LEF1_TCF7_TCF7L1,2:0.0984186322058;FOXL1:0.094950155122;MTE{core}:0.0894176303764;T:0.0890428897196;PATZ1:0.0517009196583;PRDM1:0.0453269899529;TFCP2:0.0406884583648;ARID5B:0.0404250451508;ALX4:0.0134071939329;HNF4A_NR2F1,2:0.00321620358431;FOSL2:-0.00177497004559;TOPORS:-0.00538527165544;FOXP3:-0.00706440236448;ZIC1..3:-0.0146702082223;XCPE1{core}:-0.0310773145851;ZNF143:-0.034666858602;MZF1:-0.0376452554114;ALX1:-0.0406063412121;NANOG:-0.0427562901574;bHLH_family:-0.0452525852028;ELK1,4_GABP{A,B1}:-0.0482765121768;TFAP2{A,C}:-0.0554308703063;REST:-0.0577120560968;YY1:-0.060611857195;NFY{A,B,C}:-0.0634520689887;FOS_FOS{B,L1}_JUN{B,D}:-0.0674665921944;BACH2:-0.072011288692;MEF2{A,B,C,D}:-0.0751144381982;AHR_ARNT_ARNT2:-0.0797539472629;NFE2:-0.0885667324377;FOX{F1,F2,J1}:-0.0995021464292;PAX6:-0.106588589011;SPZ1:-0.109640663769;TLX2:-0.110394099921;RUNX1..3:-0.113070774334;NKX3-2:-0.12311488955;HIC1:-0.133184858752;GATA6:-0.137610468288;TFAP2B:-0.141548000977;HOX{A4,D4}:-0.14526810903;POU1F1:-0.145428730682;HOXA9_MEIS1:-0.153995627799;NKX2-3_NKX2-5:-0.160505883669;RFX1:-0.161851458306;ATF2:-0.169295539252;AR:-0.179064729101;PBX1:-0.17967234864;STAT1,3:-0.193680635067;JUN:-0.195547497715;SOX2:-0.196184132104;NFKB1_REL_RELA:-0.199549593064;OCT4_SOX2{dimer}:-0.202049333153;GCM1,2:-0.202624042476;CUX2:-0.203163350398;DMAP1_NCOR{1,2}_SMARC:-0.218906970422;MYB:-0.22222628813;NR1H4:-0.231243661157;GATA4:-0.269922471953;ELF1,2,4:-0.272107175591;NRF1:-0.272477498236;STAT2,4,6:-0.290991919603;GFI1:-0.318338619273;NFIL3:-0.330637638896;RREB1:-0.334115981215;NHLH1,2:-0.337000598237;PITX1..3:-0.359080198759;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.36790783012;EGR1..3:-0.36790836637;MYFfamily:-0.374543030699;POU2F1..3:-0.386171282852;POU6F1:-0.393844967795;SNAI1..3:-0.396755159616;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.403854941477;STAT5{A,B}:-0.413650567437;FOXM1:-0.422780507858;ZFP161:-0.440659737321;RORA:-0.448683873597;ZBTB16:-0.449887418338;IRF7:-0.469209257718;FOXN1:-0.478373327747;IRF1,2:-0.483698785254;ETS1,2:-0.493944206315;HMX1:-0.500828675555;PAX2:-0.504166370627;SPI1:-0.516810151822;SOX{8,9,10}:-0.518075941434;VSX1,2:-0.52462234895;MED-1{core}:-0.528549537896;ATF4:-0.533845259182;POU3F1..4:-0.546104949863;LMO2:-0.575976051494;TGIF1:-0.580523356255;SPIB:-0.580796997574;PAX1,9:-0.596015431261;SREBF1,2:-0.596600532219;ATF5_CREB3:-0.61919650071;E2F1..5:-0.622227764405;MTF1:-0.627405026352;FOXQ1:-0.673451551115;BPTF:-0.678550969467;FOX{D1,D2}:-0.69158809377;ZEB1:-0.709489882317;BREu{core}:-0.734165203574;NKX6-1,2:-0.745619115063;HBP1_HMGB_SSRP1_UBTF:-0.806150873798;RFX2..5_RFXANK_RFXAP:-0.815552288916;PAX3,7:-0.816169106734;FOXP1:-0.831847477302;FOXO1,3,4:-0.853728788576;EP300:-0.86087931339;CREB1:-0.897856776713;MYOD1:-0.964282494609;IKZF2:-0.996121360951;RBPJ:-1.07251496507
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11621-122B1;search_select_hide=table117:FF:11621-122B1
}}
}}

Latest revision as of 18:12, 4 June 2020

Name:Smooth Muscle Cells - Umbilical Vein, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12569
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueumbilical vein
dev stageNA
sexNA
ageNA
cell typesmooth muscle cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number6757
catalog numberSC8025
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004772
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12569 CAGE DRX008511 DRR009383
Accession ID Hg19

Library idBAMCTSS
CNhs12569 DRZ000808 DRZ002193
Accession ID Hg38

Library idBAMCTSS
CNhs12569 DRZ012158 DRZ013543
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.199
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.153
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.208
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.201
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.079
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.197
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.508
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0407
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.252
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.134
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.185
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.174
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.287
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.012
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.699
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.112
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.669
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.273
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0919
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0407
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.112
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.434
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0407
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.885
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.472
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.513
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12569

Jaspar motifP-value
MA0002.20.846
MA0003.10.227
MA0004.10.149
MA0006.10.068
MA0007.10.227
MA0009.10.359
MA0014.10.74
MA0017.10.414
MA0018.26.37147e-5
MA0019.10.265
MA0024.15.57411e-6
MA0025.10.0247
MA0027.10.919
MA0028.10.798
MA0029.10.434
MA0030.10.0135
MA0031.10.0502
MA0035.20.192
MA0038.10.235
MA0039.20.993
MA0040.10.593
MA0041.10.65
MA0042.10.621
MA0043.10.0573
MA0046.10.594
MA0047.20.24
MA0048.10.0946
MA0050.11.62217e-7
MA0051.10.00816
MA0052.10.0581
MA0055.10.112
MA0057.10.851
MA0058.10.065
MA0059.10.56
MA0060.10.615
MA0061.10.831
MA0062.22.3094e-4
MA0065.20.3
MA0066.10.317
MA0067.11.65124e-4
MA0068.10.894
MA0069.10.63
MA0070.10.344
MA0071.10.167
MA0072.10.875
MA0073.10.412
MA0074.10.839
MA0076.10.0606
MA0077.10.79
MA0078.10.588
MA0079.20.686
MA0080.27.0633e-9
MA0081.10.00972
MA0083.10.00325
MA0084.10.18
MA0087.10.546
MA0088.10.251
MA0090.14.26545e-5
MA0091.10.0435
MA0092.10.0668
MA0093.10.146
MA0099.20.794
MA0100.10.855
MA0101.10.654
MA0102.20.407
MA0103.10.0699
MA0104.20.39
MA0105.10.257
MA0106.10.0186
MA0107.10.735
MA0108.20.0208
MA0111.10.732
MA0112.20.0168
MA0113.10.0362
MA0114.10.215
MA0115.10.152
MA0116.10.484
MA0117.10.853
MA0119.10.117
MA0122.10.658
MA0124.10.372
MA0125.10.984
MA0131.10.342
MA0135.10.193
MA0136.14.72439e-8
MA0137.20.266
MA0138.20.744
MA0139.10.946
MA0140.10.134
MA0141.10.642
MA0142.10.601
MA0143.10.613
MA0144.10.634
MA0145.10.184
MA0146.10.401
MA0147.10.446
MA0148.10.946
MA0149.10.764
MA0150.10.137
MA0152.10.115
MA0153.10.554
MA0154.10.284
MA0155.10.546
MA0156.14.64455e-5
MA0157.10.194
MA0159.10.913
MA0160.10.599
MA0162.10.0404
MA0163.10.00655
MA0164.10.845
MA0258.10.73
MA0259.10.284



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12569

Novel motifP-value
10.281
100.602
1000.367
1010.833
1020.115
1030.304
1040.376
1050.409
1060.0901
1070.00883
1080.372
1090.152
110.287
1100.201
1110.976
1120.38
1130.964
1140.478
1150.979
1160.0357
1170.975
1180.358
1190.983
120.555
1200.425
1210.963
1220.424
1230.00815
1240.913
1250.335
1260.774
1270.265
1280.183
1290.863
130.794
1300.302
1310.874
1320.513
1330.267
1340.263
1350.821
1360.931
1370.00769
1380.712
1390.798
140.414
1400.368
1410.622
1420.691
1430.126
1440.274
1450.59
1460.124
1470.113
1480.906
1490.0508
150.663
1500.339
1510.462
1520.021
1530.567
1540.715
1550.0655
1560.636
1570.326
1580.0946
1590.61
160.0409
1600.136
1610.776
1620.648
1630.453
1640.252
1650.231
1660.0615
1670.689
1680.491
1690.0904
170.182
180.0683
190.0448
20.381
200.743
210.309
220.204
230.653
240.502
250.222
260.513
270.516
280.383
290.926
30.443
300.342
310.197
322.66187e-8
330.281
340.581
350.748
360.638
370.0295
380.736
390.325
40.724
400.105
410.366
420.916
430.345
440.707
450.476
460.336
470.851
480.351
490.3
50.575
500.404
510.29
520.664
530.472
540.517
550.377
560.694
570.548
580.171
590.206
60.813
600.988
610.324
620.292
630.197
640.669
650.625
660.381
670.637
680.83
690.964
70.82
700.587
710.541
720.694
730.0332
740.792
750.931
760.564
770.103
780.759
790.0254
80.0705
800.283
810.734
820.972
830.288
840.311
850.14
860.821
870.203
880.369
890.185
90.71
900.625
910.479
920.15
930.8
940.131
950.0809
960.913
970.708
980.445
995.89335e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12569


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
0000359 (vascular associated smooth muscle cell)
0002588 (smooth muscle cell of the umbilical vein)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010260 (umbilical blood vessel)
0003920 (venous blood vessel)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0002066 (umbilical vein)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000177 (human smooth muscle cell of umbilical vein sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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