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(Created page with "{{f5samples |id=FF:11862-125A8 |name=CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1 |sample_id=11862 |rna_tube_id= |rna_box=125 |rna_position=A8 |sam...")
 
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{{f5samples
{{f5samples
|id=FF:11862-125A8
|DRA_sample_Accession=CAGE@SAMD00004744
|name=CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1
|accession_numbers=CAGE;DRX008156;DRR009028;DRZ000453;DRZ001838;DRZ011803;DRZ013188
|sample_id=11862
|ancestors_in_anatomy_facet=
|rna_tube_id=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
|rna_box=125
|rna_position=A8
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=D3-3
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=
|sample_donor(cell lot)=donor1
|sample_sex=female
|sample_age=69
|sample_ethnicity=
|rna_rin=8.80000
|rna_od260/230=1.14000
|rna_od260/280=2.02000
|sample_cell_type=monocyte
|sample_cell_line=
|sample_collaboration=Christine Wells (University of Queensland)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=3.49095
|rna_concentration=0.69819
|sample_note=
|profile_hcage=CNhs13467,,,SEQUENCING QUEUE
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000040,CL:0000048,CL:0000049,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000557,CL:0000559,CL:0000566,CL:0000576,CL:0000723,CL:0000738,CL:0000763,CL:0000766,CL:0000837,CL:0000839,CL:0000860,CL:0000988,CL:0001012,CL:0002009,CL:0002031,CL:0002032,CL:0002057,CL:0002087,CL:0002194,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001474,UBERON:0002050,UBERON:0002193,UBERON:0002204,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002532,UBERON:0004120,UBERON:0004765,UBERON:0005423
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000631,FF:0011444
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.72!5200.34!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.97!937.66!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.68!473.10!SPI1;;chr10:64576105..64576133,-!p1@EGR2!2.64!856.51!EGR2;;chr10:35484053..35484076,+!p1@CREM!2.62!985.90!CREM;;chr12:54778471..54778528,-!p1@ZNF385A!2.47!295.97!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.31!203.26!TFEC;;chr20:39317868..39317884,-!p1@MAFB!2.26!2021.55!MAFB;;chr11:47399947..47399961,-!p3@SPI1!2.19!152.26!SPI1;;chr11:64764435..64764449,-!p1@BATF2!2.14!184.42!BATF2;;chr6:106534192..106534224,+!p1@PRDM1!2.10!339.94!PRDM1;;chr6:36355431..36355466,-!p1@ETV7!2.06!114.57!ETV7;;chr7:128577972..128578047,+!p1@IRF5!2.00!153.01!IRF5;;chr21:36260295..36260310,-!p3@RUNX1!1.99!152.26!RUNX1;;chr5:131826457..131826514,-!p1@IRF1!1.98!3454.17!IRF1;;chr11:47400062..47400077,-!p2@SPI1!1.98!95.22!SPI1;;chr2:70142232..70142251,+!p1@MXD1!1.94!464.31!MXD1;;chr10:35484090..35484104,+!p6@CREM!1.94!85.42!CREM;;chr1:221052776..221052799,+!p1@HLX!1.93!147.99!HLX;;chr17:45810594..45810608,+!p1@TBX21!1.93!83.16!TBX21;;chr11:47399996..47400014,-!p4@SPI1!1.91!79.65!SPI1;;chr11:615942..615957,-!p1@IRF7!1.86!643.70!IRF7;;chr1:25256756..25256774,-!p1@RUNX3!1.84!125.62!RUNX3;;chr21:34442439..34442455,+!p1@OLIG1!1.84!68.59!OLIG1;;chr1:158985493..158985535,+!p4@IFI16!1.83!99.24!IFI16;;chr19:45971246..45971265,+!p1@FOSB!1.81!1118.56!FOSB;;chr6:106534230..106534254,+!p2@PRDM1!1.80!152.01!PRDM1;;chr1:221052733..221052749,+!p2@HLX!1.80!79.90!HLX;;chr10:64018918..64018936,+!p2@ZNF365!1.80!62.81!ZNF365;;chr16:31885093..31885165,+!p1@ZNF267!1.79!875.60!ZNF267;;chr10:31288398..31288455,-!p2@ZNF438!1.79!69.60!ZNF438;;chr2:68592394..68592405,+!p2@PLEK!1.79!61.30!PLEK;;chr11:65430554..65430579,-!p3@RELA!1.76!139.44!RELA;;chr3:12329397..12329433,+!p2@PPARG!1.74!118.59!PPARG;;chr2:231084639..231084654,-!p2@SP110!1.73!84.92!SP110;;chr2:145277640..145277771,-!p1@ZEB2!1.72!655.01!ZEB2;;chr2:157189180..157189290,-!p1@NR4A2!1.72!253.26!NR4A2;;chr22:38597987..38598021,+!p2@MAFF!1.71!290.44!MAFF;;chr19:50432132..50432217,+!p2@ATF5!1.71!59.29!ATF5;;chr11:47400032..47400043,-!p5@SPI1!1.69!47.49!SPI1;;chr2:145275162..145275202,-!p2@ZEB2!1.68!262.05!ZEB2;;chr12:72056749..72056767,+!p6@THAP2!1.68!52.01!THAP2;;chr19:33793430..33793447,-!p1@CEBPA!1.67!186.43!CEBPA;;chr12:72056800..72056834,+!p1@THAP2!1.67!60.30!THAP2;;chr21:30671690..30671762,+!p2@BACH1!1.66!146.98!BACH1;;chr2:97202480..97202499,+!p1@ARID5A!1.65!422.35!ARID5A;;chr8:22550982..22550999,-!p1@EGR3!1.65!120.35!EGR3;;chr9:102584159..102584174,+!p2@NR4A3!1.64!74.62!NR4A3;;chr16:79634624..79634642,-!p1@MAF!1.62!153.26!MAF;;chr11:65430535..65430549,-!p4@RELA!1.62!46.73!RELA;;chr14:75988831..75988847,+!p2@BATF!1.61!39.70!BATF;;chr12:54778351..54778378,-!p6@ZNF385A!1.59!37.69!ZNF385A;;chr1:212782094..212782109,+!p1@ATF3!1.58!959.77!ATF3;;chr14:75988771..75988826,+!p1@BATF!1.58!49.24!BATF;;chr10:31288370..31288393,-!p3@ZNF438!1.58!37.18!ZNF438;;chr21:30671235..30671253,+!p1@BACH1!1.57!433.91!BACH1;;chr1:158979872..158979898,+!p3@IFI16!1.57!108.04!IFI16;;chr12:72056773..72056796,+!p3@THAP2!1.57!46.73!THAP2;;chr2:191885737..191885750,-!p4@STAT1!1.57!36.43!STAT1;;chr3:12330560..12330579,+!p1@PPARG!1.56!39.95!PPARG;;chr10:35484804..35484902,+!p2@CREM!1.54!124.37!CREM;;chr6:15246200..15246214,+!p2@JARID2!1.54!91.20!JARID2;;chr17:38497662..38497713,+!p4@RARA!1.52!37.18!RARA;;chr2:231090471..231090504,+!p2@SP140!1.52!32.16!SP140;;chr21:36421535..36421610,-!p2@RUNX1!1.49!103.01!RUNX1;;chr9:110252035..110252057,-!p1@KLF4!1.48!447.73!KLF4;;chr11:615570..615721,-!p2@IRF7!1.48!56.78!IRF7;;chr4:185395590..185395627,-!p3@IRF2!1.48!35.93!IRF2;;chr9:102584262..102584276,+!p1@NR4A3!1.47!62.56!NR4A3;;chrX:129244454..129244488,-!p1@ELF4!1.46!193.21!ELF4;;chr13:41593425..41593480,-!p1@ELF1!1.46!170.35!ELF1;;chr12:48298765..48298783,-!p2@VDR!1.45!56.03!VDR;;chr19:36391434..36391450,-!p1@NFKBID!1.44!51.76!NFKBID;;chr3:39195139..39195150,-!p3@CSRNP1!1.44!33.67!CSRNP1;;chr11:65430038..65430053,-!p12@RELA!1.44!26.38!RELA;;chr6:391743..391759,+!p1@IRF4!1.44!26.38!IRF4;;chr21:36260343..36260402,-!p6@RUNX1!1.43!41.20!RUNX1;;chr19:45251395..45251432,+!p8@BCL3!1.43!25.88!BCL3;;chr6:106535598..106535637,+!p7@PRDM1!1.43!25.63!PRDM1;;chr6:144385698..144385742,-!p2@PLAGL1!1.41!29.65!PLAGL1;;chr9:102584128..102584144,+!p3@NR4A3!1.40!44.97!NR4A3;;chr20:48807351..48807384,+!p1@CEBPB!1.39!2320.78!CEBPB;;chr4:185395633..185395651,-!p2@IRF2!1.39!37.69!IRF2;;chr11:47400045..47400060,-!p6@SPI1!1.38!23.11!SPI1;;chr12:11802753..11802834,+!p2@ETV6!1.37!107.53!ETV6;;chr8:116681123..116681143,-!p4@TRPS1!1.36!41.46!TRPS1;;chr2:28618532..28618610,+!p4@FOSL2!1.36!37.44!FOSL2;;chr14:35872453..35872485,-!p2@NFKBIA!1.34!50.75!NFKBIA;;chr2:70167296..70167306,+!p3@MXD1!1.34!31.91!MXD1;;chr10:51572408..51572454,+!p3@NCOA4!1.33!115.83!NCOA4;;chr2:145277882..145277967,-!p3@ZEB2!1.33!35.17!ZEB2;;chr21:30672433..30672464,+!p6@BACH1!1.33!20.60!BACH1;;chr4:106068026..106068084,+!p1@TET2!1.31!169.34!TET2;;chr11:65429891..65429915,-!p7@RELA!1.31!19.60!RELA;;chr11:47399920..47399931,-!p7@SPI1!1.31!19.35!SPI1;;chr3:187463179..187463201,-!p2@BCL6!1.30!75.88!BCL6;;chr6:126240380..126240430,+!p2@NCOA7!1.30!48.74!NCOA7;;chr9:110250697..110250738,-!p2@KLF4!1.30!22.36!KLF4;;chr7:50344289..50344323,+!p1@IKZF1!1.29!18.59!IKZF1;;chrX:153305787..153305807,-!p3@MECP2!1.29!18.59!MECP2;;chr21:36260325..36260341,-!p14@RUNX1!1.29!18.34!RUNX1;;chr3:39195037..39195069,-!p2@CSRNP1!1.28!110.05!CSRNP1;;chr18:3449720..3449749,+!p2@TGIF1!1.28!37.94!TGIF1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.28!18.09!ZBED1;;chr12:52445218..52445237,+!p1@NR4A1!1.26!213.31!NR4A1;;chr19:45250948..45250998,+!p3@BCL3!1.26!43.47!BCL3;;chr16:79634595..79634620,-!p2@MAF!1.26!31.15!MAF;;chr9:129567282..129567353,+!p1@ZBTB43!1.25!216.33!ZBTB43;;chr1:221052840..221052875,+!p4@HLX!1.25!19.85!HLX;;chr14:75745523..75745537,+!p1@FOS!1.24!1889.14!FOS;;chr21:36260980..36261011,-!p1@RUNX1!1.24!455.77!RUNX1;;chr1:158979792..158979814,+!p2@IFI16!1.24!153.76!IFI16;;chr2:61108695..61108753,+!p1@REL!1.24!111.55!REL;;chr10:104155480..104155534,+!p2@NFKB2!1.24!103.26!NFKB2;;chr18:3449586..3449617,+!p8@TGIF1!1.24!26.38!TGIF1;;chr1:25256439..25256476,-!p3@RUNX3!1.24!16.33!RUNX3;;chr2:70314240..70314256,+!p4@PCBP1!1.23!33.16!PCBP1;;chr2:145271342..145271377,-!p5@ZEB2!1.23!15.83!ZEB2;;chr3:187455680..187455700,-!p4@BCL6!1.23!15.83!BCL6;;chr10:51572339..51572376,+!p4@NCOA4!1.22!35.17!NCOA4;;chr12:48298785..48298828,-!p1@VDR!1.21!80.40!VDR;;chr1:221053049..221053075,+!p3@HLX!1.21!26.63!HLX;;chr20:48809000..48809053,+!p12@CEBPB!1.21!20.35!CEBPB;;chr18:3449618..3449634,+!p13@TGIF1!1.21!18.84!TGIF1;;chr2:231090433..231090469,+!p1@SP140!1.21!15.33!SP140;;chr3:187455486..187455504,-!p6@BCL6!1.21!15.33!BCL6;;chrX:129244430..129244442,-!p5@ELF4!1.21!15.33!ELF4;;chr19:54058073..54058088,+!p1@ZNF331!1.21!15.07!ZNF331;;chr22:38598086..38598105,+!p1@MAFF!1.20!156.28!MAFF;;chr6:126240463..126240489,+!p6@NCOA7!1.20!16.58!NCOA7;;chr22:38598057..38598071,+!p3@MAFF!1.19!33.42!MAFF;;chr14:35873947..35873965,-!p1@NFKBIA!1.18!875.85!NFKBIA;;chr6:44233252..44233296,-!p1@NFKBIE!1.18!137.68!NFKBIE;;chr7:28725740..28725778,+!p1@CREB5!1.18!124.87!CREB5;;chr10:3827371..3827386,-!p2@KLF6!1.18!117.33!KLF6;;chr1:221052994..221053008,+!p6@HLX!1.18!16.58!HLX;;chr1:212738742..212738755,+!p2@ATF3!1.18!14.07!ATF3;;chr17:38497715..38497734,+!p8@RARA!1.18!14.07!RARA;;chr20:48599506..48599526,+!p1@SNAI1!1.17!87.18!SNAI1;;chr16:3285119..3285133,-!p2@ZNF200!1.17!27.64!ZNF200;;chr21:30672734..30672748,+!p11@BACH1!1.17!13.82!BACH1;;chr2:28615716..28615733,+!p1@FOSL2!1.16!635.16!FOSL2;;chr2:231084659..231084721,-!p1@SP110!1.16!311.05!SP110;;chr16:3285144..3285191,-!p1@ZNF200!1.16!66.08!ZNF200;;chr7:149470641..149470694,-!p1@ZNF467!1.16!60.05!ZNF467;;chr19:45252008..45252024,+!p2@BCL3!1.16!44.22!BCL3;;chr10:64575812..64575824,-!p4@EGR2!1.16!13.57!EGR2;;chr1:158979922..158979933,+!p13@IFI16!1.16!13.32!IFI16;;chr4:103422499..103422632,+!p1@NFKB1!1.15!273.11!NFKB1;;chr8:116681150..116681164,-!p5@TRPS1!1.15!25.63!TRPS1;;chr4:81118647..81118666,+!p1@PRDM8!1.15!17.34!PRDM8;;chr17:38474489..38474548,+!p1@RARA!1.14!400.24!RARA;;chr8:116681194..116681214,-!p1@TRPS1!1.14!118.84!TRPS1;;chr3:39195075..39195088,-!p1@CSRNP1!1.14!79.14!CSRNP1;;chr14:35872962..35873025,-!p3@NFKBIA!1.14!32.16!NFKBIA;;chr18:3449527..3449582,+!p6@TGIF1!1.14!24.37!TGIF1;;chr6:15246261..15246312,+!p1@JARID2!1.13!300.24!JARID2;;chr1:161736038..161736056,+!p4@ATF6!1.13!29.65!ATF6;;chr18:3448455..3448480,+!p5@TGIF1!1.13!23.11!TGIF1;;chr6:15246217..15246228,+!p3@JARID2!1.13!22.36!JARID2;;chr1:8484007..8484061,-!p13@RERE!1.13!16.08!RERE;;chr2:145275228..145275241,-!p11@ZEB2!1.13!15.33!ZEB2;;chr19:54041669..54041697,+!p2@ZNF331!1.13!12.56!ZNF331;;chr19:19496539..19496576,+!p8@GATAD2A!1.12!21.36!GATAD2A;;chr4:185395191..185395226,-!p4@IRF2!1.12!17.08!IRF2;;chr8:53373491..53373506,-!p4@ST18!1.12!12.31!ST18;;chr12:56415246..56415286,+!p2@IKZF4!1.12!12.06!IKZF4;;chr21:40177845..40177863,+!p1@ETS2!1.11!708.02!ETS2;;chr20:48807456..48807475,+!p3@CEBPB!1.11!23.11!CEBPB;;chr2:231280954..231280965,+!p2@SP100!1.11!22.11!SP100;;chr3:187455634..187455651,-!p7@BCL6!1.11!11.81!BCL6;;chr4:106066712..106066728,+!p8@TET2!1.11!11.81!TET2;;chr13:41593392..41593403,-!p7@ELF1!1.11!11.81!ELF1;;chr7:17338266..17338282,+!p1@AHR!1.10!124.12!AHR;;chr8:72756063..72756125,-!p1@MSC!1.10!23.62!MSC;;chr20:48807615..48807644,+!p6@CEBPB!1.10!19.35!CEBPB;;chr3:150126101..150126118,+!p6@TSC22D2!1.10!18.84!TSC22D2;;chr5:142782823..142782854,-!p3@NR3C1!1.10!16.58!NR3C1;;chr21:34398234..34398250,+!p1@OLIG2!1.10!11.56!OLIG2;;chr9:88969303..88969335,-!p1@ZCCHC6!1.09!105.02!ZCCHC6;;chr10:35416142..35416169,+!p3@CREM!1.09!30.40!CREM;;chr1:158979851..158979865,+!p5@IFI16!1.09!25.12!IFI16;;chr12:54785074..54785122,-!p2@ZNF385A!1.09!17.59!ZNF385A;;chr9:88969339..88969422,-!p2@ZCCHC6!1.08!87.18!ZCCHC6;;chr10:104154246..104154347,+!p3@NFKB2!1.08!67.33!NFKB2;;chr14:62162285..621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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=EFO:0000369,FF:0000625,FF:0000631,FF:0011444,FF:11862-125A8
|fonse_treatment=EFO:0000369,FF:0000625,FF:0000631,FF:0011444,FF:11862-125A8
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor1.CNhs13467.11862-125A8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor1.CNhs13467.11862-125A8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor1.CNhs13467.11862-125A8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor1.CNhs13467.11862-125A8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor1.CNhs13467.11862-125A8.hg38.nobarcode.ctss.bed.gz
|id=FF:11862-125A8
|is_a=EFO:0002091;;FF:0011444
|is_obsolete=
|library_id=CNhs13467
|library_id_phase_based=2:CNhs13467
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11862
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11862
|name=CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1
|namespace=
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|profile_hcage=CNhs13467,LSID1024,release012,COMPLETED
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|rna_box=125
|rna_catalog_number=
|rna_concentration=0.69819
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=D3-3
|rna_od260/230=1.14
|rna_od260/280=2.02
|rna_position=A8
|rna_rin=8.8
|rna_sample_type=total RNA
|rna_tube_id=125A8
|rna_weight_ug=3.49095
|sample_age=69
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_lot=
|sample_cell_type=monocyte
|sample_collaboration=Christine Wells (University of Queensland)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=donor1
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.11550986833546e-274!GO:0005737;cytoplasm;8.38822454392541e-129!GO:0043227;membrane-bound organelle;1.25177979215859e-114!GO:0043231;intracellular membrane-bound organelle;2.26640758062294e-114!GO:0043226;organelle;6.57606473527404e-106!GO:0043229;intracellular organelle;3.67211862110826e-105!GO:0044444;cytoplasmic part;2.01816568758697e-84!GO:0044422;organelle part;1.72230811610019e-69!GO:0005515;protein binding;2.26191461783185e-69!GO:0044446;intracellular organelle part;5.82535299962324e-68!GO:0044237;cellular metabolic process;1.67717807676566e-64!GO:0044238;primary metabolic process;7.43013649455172e-63!GO:0043170;macromolecule metabolic process;9.40000464725954e-61!GO:0032991;macromolecular complex;1.29793708887025e-55!GO:0003723;RNA binding;9.97282795639438e-53!GO:0019538;protein metabolic process;4.5491457740022e-48!GO:0044267;cellular protein metabolic process;8.08898356494799e-45!GO:0044260;cellular macromolecule metabolic process;8.08898356494799e-45!GO:0030529;ribonucleoprotein complex;1.29685767858194e-44!GO:0005634;nucleus;2.65550562130109e-44!GO:0044428;nuclear part;6.91176321191162e-44!GO:0033036;macromolecule localization;1.65350301221416e-42!GO:0045184;establishment of protein localization;1.4194026260116e-41!GO:0015031;protein transport;1.73005394974614e-41!GO:0008104;protein localization;1.1149397005142e-39!GO:0043233;organelle lumen;2.09477882517042e-36!GO:0031974;membrane-enclosed lumen;2.09477882517042e-36!GO:0006412;translation;4.43055192899403e-36!GO:0005829;cytosol;9.4745286134025e-36!GO:0031090;organelle membrane;2.14277204337518e-34!GO:0043283;biopolymer metabolic process;5.46252584006981e-33!GO:0006915;apoptosis;5.07125055011819e-32!GO:0012501;programmed cell death;6.31684560326262e-32!GO:0008219;cell death;1.16088332986502e-30!GO:0016265;death;1.16088332986502e-30!GO:0016071;mRNA metabolic process;4.76503006647353e-30!GO:0010467;gene expression;3.10269534896009e-29!GO:0043234;protein complex;3.26977822790279e-29!GO:0031981;nuclear lumen;1.26351340800539e-27!GO:0009059;macromolecule biosynthetic process;1.36599839657956e-27!GO:0006396;RNA processing;1.60370420264861e-27!GO:0046907;intracellular transport;2.21446962204408e-27!GO:0006886;intracellular protein transport;2.36791559890553e-27!GO:0009058;biosynthetic process;1.68320946228791e-26!GO:0016043;cellular component organization and biogenesis;1.89338842027428e-26!GO:0005739;mitochondrion;4.47059517480047e-26!GO:0044249;cellular biosynthetic process;9.50244308977753e-26!GO:0008380;RNA splicing;9.53583432239505e-26!GO:0006397;mRNA processing;1.82694159716107e-25!GO:0031967;organelle envelope;2.03460195773945e-25!GO:0031975;envelope;3.90127863592406e-25!GO:0005840;ribosome;6.46189393981117e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.09222663476673e-22!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.71677081042049e-21!GO:0051649;establishment of cellular localization;1.71677081042049e-21!GO:0033279;ribosomal subunit;2.43704935478545e-21!GO:0003735;structural constituent of ribosome;2.83587921895662e-21!GO:0000166;nucleotide binding;3.91754900029649e-21!GO:0042981;regulation of apoptosis;4.08897934025619e-21!GO:0044445;cytosolic part;6.47579307343792e-21!GO:0065003;macromolecular complex assembly;8.59672548535383e-21!GO:0043067;regulation of programmed cell death;1.00088216692799e-20!GO:0051641;cellular localization;1.07904541776183e-20!GO:0005654;nucleoplasm;1.60965298424323e-20!GO:0044429;mitochondrial part;4.47434180611613e-20!GO:0005681;spliceosome;2.03657750831857e-19!GO:0008134;transcription factor binding;6.44080537992192e-19!GO:0016192;vesicle-mediated transport;9.14121918505741e-18!GO:0007243;protein kinase cascade;9.21802539593828e-18!GO:0043412;biopolymer modification;2.09136064863029e-17!GO:0044265;cellular macromolecule catabolic process;2.62374826970809e-17!GO:0022607;cellular component assembly;2.75721862976949e-17!GO:0006512;ubiquitin cycle;2.95641406438116e-17!GO:0044451;nucleoplasm part;3.78817252402543e-17!GO:0002376;immune system process;4.9307824732974e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.62739710167887e-16!GO:0006119;oxidative phosphorylation;1.70979079352971e-16!GO:0006464;protein modification process;1.79846189013797e-16!GO:0016462;pyrophosphatase activity;1.84947969932964e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;2.15394767592689e-16!GO:0048523;negative regulation of cellular process;2.22091364022422e-16!GO:0005740;mitochondrial envelope;3.73166386451129e-16!GO:0005773;vacuole;3.7944033530108e-16!GO:0017111;nucleoside-triphosphatase activity;4.9269440407681e-16!GO:0043687;post-translational protein modification;5.72500166331171e-16!GO:0031966;mitochondrial membrane;8.49235264390914e-16!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.10182312834729e-16!GO:0032553;ribonucleotide binding;1.43482503205158e-15!GO:0032555;purine ribonucleotide binding;1.43482503205158e-15!GO:0048770;pigment granule;1.54915110972055e-15!GO:0042470;melanosome;1.54915110972055e-15!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.68996459615484e-15!GO:0043285;biopolymer catabolic process;5.26808618357792e-15!GO:0019866;organelle inner membrane;8.64858508533158e-15!GO:0017076;purine nucleotide binding;8.64858508533158e-15!GO:0007242;intracellular signaling cascade;1.08384736788286e-14!GO:0019941;modification-dependent protein catabolic process;1.19117475910556e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.19117475910556e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.54589555954415e-14!GO:0044257;cellular protein catabolic process;1.67273148720549e-14!GO:0000323;lytic vacuole;1.68390713060804e-14!GO:0005764;lysosome;1.68390713060804e-14!GO:0022618;protein-RNA complex assembly;1.76627848076038e-14!GO:0048519;negative regulation of biological process;1.93256456222605e-14!GO:0006511;ubiquitin-dependent protein catabolic process;2.38006207276898e-14!GO:0006955;immune response;2.9136998511137e-14!GO:0006605;protein targeting;3.68393485144436e-14!GO:0009057;macromolecule catabolic process;4.95841508492581e-14!GO:0050794;regulation of cellular process;1.66261453555236e-13!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.21152743124556e-13!GO:0044248;cellular catabolic process;2.40208617349293e-13!GO:0012505;endomembrane system;2.57931327799273e-13!GO:0016070;RNA metabolic process;3.79290853362068e-13!GO:0006793;phosphorus metabolic process;4.59013208646518e-13!GO:0006796;phosphate metabolic process;4.59013208646518e-13!GO:0006913;nucleocytoplasmic transport;5.25638698514188e-13!GO:0005794;Golgi apparatus;5.27611904082493e-13!GO:0043069;negative regulation of programmed cell death;6.24547496686761e-13!GO:0043066;negative regulation of apoptosis;6.44310793292537e-13!GO:0003676;nucleic acid binding;8.20109476433091e-13!GO:0016604;nuclear body;8.89118425648415e-13!GO:0051169;nuclear transport;9.78491550496709e-13!GO:0065009;regulation of a molecular function;1.1095235731471e-12!GO:0016874;ligase activity;1.2266173898499e-12!GO:0005768;endosome;1.38934789995863e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.52364245899538e-12!GO:0005743;mitochondrial inner membrane;2.8198965211836e-12!GO:0006950;response to stress;2.90438008651844e-12!GO:0030163;protein catabolic process;3.66382412478903e-12!GO:0006996;organelle organization and biogenesis;5.09705389719185e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.6879994179441e-12!GO:0051246;regulation of protein metabolic process;7.55622190486356e-12!GO:0006366;transcription from RNA polymerase II promoter;8.57218265525455e-12!GO:0016310;phosphorylation;1.00868727886033e-11!GO:0008135;translation factor activity, nucleic acid binding;1.08261911025718e-11!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.16059894755125e-11!GO:0015934;large ribosomal subunit;1.24275554863639e-11!GO:0006457;protein folding;1.4400908527077e-11!GO:0044455;mitochondrial membrane part;1.53708626984475e-11!GO:0003712;transcription cofactor activity;1.85247437413316e-11!GO:0006916;anti-apoptosis;2.34064250105555e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.31749486048705e-11!GO:0009615;response to virus;6.36743506397814e-11!GO:0050789;regulation of biological process;6.53333112620143e-11!GO:0016607;nuclear speck;7.02670352135937e-11!GO:0005524;ATP binding;9.72995663929675e-11!GO:0015935;small ribosomal subunit;1.16565459068111e-10!GO:0032559;adenyl ribonucleotide binding;1.16565459068111e-10!GO:0003743;translation initiation factor activity;1.91730310403375e-10!GO:0005783;endoplasmic reticulum;2.84693104530629e-10!GO:0006413;translational initiation;4.20568666872074e-10!GO:0051186;cofactor metabolic process;4.69382606835847e-10!GO:0031324;negative regulation of cellular metabolic process;5.29023910350994e-10!GO:0048522;positive regulation of cellular process;5.32939001284905e-10!GO:0030554;adenyl nucleotide binding;6.65209440565957e-10!GO:0006446;regulation of translational initiation;7.48986695438478e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.53648198911459e-09!GO:0065007;biological regulation;1.55121131522315e-09!GO:0006259;DNA metabolic process;1.57690717085512e-09!GO:0016787;hydrolase activity;1.63588882924403e-09!GO:0008639;small protein conjugating enzyme activity;1.67422134370142e-09!GO:0009967;positive regulation of signal transduction;2.16734127604961e-09!GO:0005635;nuclear envelope;2.2544373302315e-09!GO:0019787;small conjugating protein ligase activity;2.26950042573211e-09!GO:0050790;regulation of catalytic activity;2.60785304253281e-09!GO:0048518;positive regulation of biological process;2.70998492449047e-09!GO:0004842;ubiquitin-protein ligase activity;2.72581141302739e-09!GO:0005746;mitochondrial respiratory chain;3.15328167291679e-09!GO:0009607;response to biotic stimulus;3.79645678734679e-09!GO:0051082;unfolded protein binding;4.27737180604106e-09!GO:0048193;Golgi vesicle transport;4.76563515918562e-09!GO:0015986;ATP synthesis coupled proton transport;5.06133947642071e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.06133947642071e-09!GO:0006732;coenzyme metabolic process;5.06133947642071e-09!GO:0009056;catabolic process;5.51845225028494e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.21238723445506e-09!GO:0043065;positive regulation of apoptosis;7.96352015050942e-09!GO:0017038;protein import;9.13081612398119e-09!GO:0019829;cation-transporting ATPase activity;1.02345349763532e-08!GO:0005770;late endosome;1.03924964526369e-08!GO:0009892;negative regulation of metabolic process;1.04210090460534e-08!GO:0043068;positive regulation of programmed cell death;1.17882917183146e-08!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.43353420709394e-08!GO:0051170;nuclear import;1.77800493101296e-08!GO:0050136;NADH dehydrogenase (quinone) activity;1.95163256775944e-08!GO:0003954;NADH dehydrogenase activity;1.95163256775944e-08!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.95163256775944e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;2.06677229218971e-08!GO:0000375;RNA splicing, via transesterification reactions;2.06677229218971e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.06677229218971e-08!GO:0006417;regulation of translation;2.88486360090303e-08!GO:0003924;GTPase activity;3.33921855715799e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.06690037515941e-08!GO:0016564;transcription repressor activity;4.14686122031507e-08!GO:0006606;protein import into nucleus;4.17768982691765e-08!GO:0048468;cell development;4.44449513878897e-08!GO:0016881;acid-amino acid ligase activity;5.72521749636315e-08!GO:0042623;ATPase activity, coupled;5.83275342242878e-08!GO:0044432;endoplasmic reticulum part;5.89051575335026e-08!GO:0006754;ATP biosynthetic process;6.86933586275752e-08!GO:0006753;nucleoside phosphate metabolic process;6.86933586275752e-08!GO:0016887;ATPase activity;7.11071393136257e-08!GO:0005525;GTP binding;9.16788146098961e-08!GO:0016481;negative regulation of transcription;9.24483038618673e-08!GO:0051726;regulation of cell cycle;9.83907192712092e-08!GO:0009150;purine ribonucleotide metabolic process;1.11665106660606e-07!GO:0000074;regulation of progression through cell cycle;1.13972473687213e-07!GO:0006163;purine nucleotide metabolic process;1.14558446149496e-07!GO:0005774;vacuolar membrane;1.17449789267628e-07!GO:0005730;nucleolus;1.22778117350022e-07!GO:0007049;cell cycle;1.26578870739346e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.4884593546993e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.6393069931955e-07!GO:0006164;purine nucleotide biosynthetic process;1.66007701603179e-07!GO:0009259;ribonucleotide metabolic process;1.70995335170738e-07!GO:0009966;regulation of signal transduction;1.7788960557685e-07!GO:0009055;electron carrier activity;2.09954706036032e-07!GO:0006917;induction of apoptosis;2.21925949233094e-07!GO:0019899;enzyme binding;2.23905839229915e-07!GO:0046034;ATP metabolic process;2.42494461957587e-07!GO:0008047;enzyme activator activity;2.46945389238674e-07!GO:0031965;nuclear membrane;2.5226953877391e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.94218235473057e-07!GO:0007264;small GTPase mediated signal transduction;3.08653415277847e-07!GO:0009889;regulation of biosynthetic process;3.10210058368176e-07!GO:0042775;organelle ATP synthesis coupled electron transport;3.19808168688545e-07!GO:0042773;ATP synthesis coupled electron transport;3.19808168688545e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.31927710069608e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.31927710069608e-07!GO:0005793;ER-Golgi intermediate compartment;3.34443561157948e-07!GO:0012502;induction of programmed cell death;3.57068146146008e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.93870745764266e-07!GO:0044440;endosomal part;4.13910341921184e-07!GO:0010008;endosome membrane;4.13910341921184e-07!GO:0003713;transcription coactivator activity;4.19477207687115e-07!GO:0030964;NADH dehydrogenase complex (quinone);4.20515714991464e-07!GO:0045271;respiratory chain complex I;4.20515714991464e-07!GO:0005747;mitochondrial respiratory chain complex I;4.20515714991464e-07!GO:0044453;nuclear membrane part;4.36475672673784e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.57901840261269e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.57901840261269e-07!GO:0031326;regulation of cellular biosynthetic process;5.1424685359407e-07!GO:0045786;negative regulation of progression through cell cycle;5.14494375510432e-07!GO:0008565;protein transporter activity;5.19812720647906e-07!GO:0009260;ribonucleotide biosynthetic process;5.35645931876755e-07!GO:0051188;cofactor biosynthetic process;5.45097965894773e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.71884442774098e-07!GO:0009144;purine nucleoside triphosphate metabolic process;5.71884442774098e-07!GO:0044437;vacuolar part;5.71884442774098e-07!GO:0006461;protein complex assembly;5.90072769560968e-07!GO:0019222;regulation of metabolic process;6.55821717266123e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.02257419888512e-07!GO:0009199;ribonucleoside triphosphate metabolic process;7.52848344831344e-07!GO:0005765;lysosomal membrane;7.53540590362152e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.87749359032757e-07!GO:0009108;coenzyme biosynthetic process;1.0506199036893e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.80232645678274e-06!GO:0032561;guanyl ribonucleotide binding;1.80719442029652e-06!GO:0019001;guanyl nucleotide binding;1.80719442029652e-06!GO:0005789;endoplasmic reticulum membrane;1.80921792186773e-06!GO:0009141;nucleoside triphosphate metabolic process;1.81588327955785e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.46847141638948e-06!GO:0016044;membrane organization and biogenesis;2.47090915093885e-06!GO:0031982;vesicle;2.6753925094247e-06!GO:0032446;protein modification by small protein conjugation;2.72333382065187e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.72333382065187e-06!GO:0006752;group transfer coenzyme metabolic process;3.28364611221354e-06!GO:0016563;transcription activator activity;3.53388778292243e-06!GO:0016567;protein ubiquitination;5.02092235610951e-06!GO:0031980;mitochondrial lumen;5.16780384384284e-06!GO:0005759;mitochondrial matrix;5.16780384384284e-06!GO:0043228;non-membrane-bound organelle;5.19158918019865e-06!GO:0043232;intracellular non-membrane-bound organelle;5.19158918019865e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.81810847115622e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;6.33829276117585e-06!GO:0050657;nucleic acid transport;7.07184461665937e-06!GO:0051236;establishment of RNA localization;7.07184461665937e-06!GO:0050658;RNA transport;7.07184461665937e-06!GO:0016568;chromatin modification;7.84426623123802e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.09633948645385e-06!GO:0006403;RNA localization;9.24198385950037e-06!GO:0004386;helicase activity;1.000243615571e-05!GO:0004298;threonine endopeptidase activity;1.0299817085335e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.08350091639348e-05!GO:0015399;primary active transmembrane transporter activity;1.08350091639348e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.09695132145444e-05!GO:0048475;coated membrane;1.18124199795275e-05!GO:0030117;membrane coat;1.18124199795275e-05!GO:0008026;ATP-dependent helicase activity;1.29373147675134e-05!GO:0031252;leading edge;1.41590400438113e-05!GO:0005643;nuclear pore;1.42689021919062e-05!GO:0006323;DNA packaging;1.46734261858247e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.62478149652189e-05!GO:0031410;cytoplasmic vesicle;1.67281197298027e-05!GO:0051336;regulation of hydrolase activity;1.78397784763314e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.93054073774566e-05!GO:0006974;response to DNA damage stimulus;1.93212680423239e-05!GO:0016197;endosome transport;1.97381716621371e-05!GO:0031902;late endosome membrane;2.36087087524072e-05!GO:0030695;GTPase regulator activity;2.42866405765047e-05!GO:0030120;vesicle coat;2.47025343391378e-05!GO:0030662;coated vesicle membrane;2.47025343391378e-05!GO:0006954;inflammatory response;2.7842378222762e-05!GO:0030099;myeloid cell differentiation;3.05779313176414e-05!GO:0008632;apoptotic program;3.31441824620635e-05!GO:0051707;response to other organism;3.55755652759309e-05!GO:0031988;membrane-bound vesicle;3.77325707582206e-05!GO:0005096;GTPase activator activity;4.01449096994969e-05!GO:0003714;transcription corepressor activity;4.10188402755027e-05!GO:0006897;endocytosis;5.29696820241877e-05!GO:0010324;membrane invagination;5.29696820241877e-05!GO:0006401;RNA catabolic process;5.58550818715311e-05!GO:0031323;regulation of cellular metabolic process;6.76456808360689e-05!GO:0005769;early endosome;7.50746542809218e-05!GO:0051028;mRNA transport;7.62732466402945e-05!GO:0001816;cytokine production;7.7063626288312e-05!GO:0045259;proton-transporting ATP synthase complex;8.0584228842247e-05!GO:0051789;response to protein stimulus;8.75752888357322e-05!GO:0006986;response to unfolded protein;8.75752888357322e-05!GO:0051338;regulation of transferase activity;9.18300714842056e-05!GO:0022402;cell cycle process;9.18904604178515e-05!GO:0044431;Golgi apparatus part;0.000103613698088152!GO:0006952;defense response;0.000104222016092251!GO:0046822;regulation of nucleocytoplasmic transport;0.000116466758713285!GO:0016023;cytoplasmic membrane-bound vesicle;0.000116684012402666!GO:0008234;cysteine-type peptidase activity;0.000117517163677719!GO:0006613;cotranslational protein targeting to membrane;0.000119211207979463!GO:0043492;ATPase activity, coupled to movement of substances;0.000119577197078624!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000130368916857041!GO:0045892;negative regulation of transcription, DNA-dependent;0.000130368916857041!GO:0046930;pore complex;0.000134034346227598!GO:0005083;small GTPase regulator activity;0.000134034346227598!GO:0043566;structure-specific DNA binding;0.000144170481546238!GO:0009893;positive regulation of metabolic process;0.000144900061004071!GO:0009060;aerobic respiration;0.000156746097465991!GO:0003724;RNA helicase activity;0.000163094367956388!GO:0004674;protein serine/threonine kinase activity;0.000164226829631035!GO:0032940;secretion by cell;0.000166655325914964!GO:0051427;hormone receptor binding;0.000179751890138097!GO:0016740;transferase activity;0.00018010770253765!GO:0005798;Golgi-associated vesicle;0.000180441126490342!GO:0005057;receptor signaling protein activity;0.000183094765679041!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000184856831886454!GO:0043549;regulation of kinase activity;0.000190133322737325!GO:0051168;nuclear export;0.000190133322737325!GO:0003697;single-stranded DNA binding;0.00022706631633634!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00022828809752189!GO:0005885;Arp2/3 protein complex;0.000271771350281793!GO:0045859;regulation of protein kinase activity;0.000273677861109387!GO:0035257;nuclear hormone receptor binding;0.000282717256346934!GO:0000151;ubiquitin ligase complex;0.000285176792270616!GO:0006281;DNA repair;0.000290212869018682!GO:0051276;chromosome organization and biogenesis;0.000297060834040793!GO:0030097;hemopoiesis;0.000321765614173275!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000329624682652126!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000336403924027016!GO:0006818;hydrogen transport;0.000344776888211813!GO:0065002;intracellular protein transport across a membrane;0.000348822662170129!GO:0045321;leukocyte activation;0.000353405902458211!GO:0030532;small nuclear ribonucleoprotein complex;0.000361071754336585!GO:0000245;spliceosome assembly;0.000388128962159666!GO:0046519;sphingoid metabolic process;0.000390164363008637!GO:0007034;vacuolar transport;0.0004061308050417!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000406618095312476!GO:0006402;mRNA catabolic process;0.000429922708490443!GO:0007050;cell cycle arrest;0.000448757507039457!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000466129529983593!GO:0007265;Ras protein signal transduction;0.000479201665363864!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000498702984878635!GO:0015992;proton transport;0.000499994067738786!GO:0046983;protein dimerization activity;0.000604560748968456!GO:0022890;inorganic cation transmembrane transporter activity;0.000622725300015341!GO:0007041;lysosomal transport;0.000622828349917793!GO:0051223;regulation of protein transport;0.000639941287525163!GO:0045941;positive regulation of transcription;0.000644931782139459!GO:0006643;membrane lipid metabolic process;0.00066825804011079!GO:0006672;ceramide metabolic process;0.000668607724674216!GO:0045333;cellular respiration;0.000673044498853862!GO:0010468;regulation of gene expression;0.000680524728532049!GO:0045893;positive regulation of transcription, DNA-dependent;0.000690008577272483!GO:0007259;JAK-STAT cascade;0.000714693154974557!GO:0007040;lysosome organization and biogenesis;0.000724716233667881!GO:0006612;protein targeting to membrane;0.000732631486455422!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.000732631486455422!GO:0005741;mitochondrial outer membrane;0.000754255055368088!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.000776819004331283!GO:0007005;mitochondrion organization and biogenesis;0.000776819004331283!GO:0008654;phospholipid biosynthetic process;0.000776886272727013!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000796076142576424!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000861867322421804!GO:0033157;regulation of intracellular protein transport;0.000911964297057471!GO:0042306;regulation of protein import into nucleus;0.000911964297057471!GO:0005667;transcription factor complex;0.000930189224438221!GO:0003729;mRNA binding;0.000965822652708226!GO:0016301;kinase activity;0.00101838337934755!GO:0005099;Ras GTPase activator activity;0.00105934246163884!GO:0045637;regulation of myeloid cell differentiation;0.00111323567921553!GO:0001726;ruffle;0.00122916634649167!GO:0005637;nuclear inner membrane;0.00128914023187209!GO:0033116;ER-Golgi intermediate compartment membrane;0.00129747536354662!GO:0065004;protein-DNA complex assembly;0.00135835067099833!GO:0043281;regulation of caspase activity;0.00135916286218554!GO:0030149;sphingolipid catabolic process;0.00136836106078886!GO:0030036;actin cytoskeleton organization and biogenesis;0.00137079699006594!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00139011294205592!GO:0043085;positive regulation of catalytic activity;0.00144398623964253!GO:0006919;caspase activation;0.00146954002521664!GO:0007033;vacuole organization and biogenesis;0.00147591821950201!GO:0006468;protein amino acid phosphorylation;0.00147839472671439!GO:0044262;cellular carbohydrate metabolic process;0.00148443264789835!GO:0031325;positive regulation of cellular metabolic process;0.00148628228546343!GO:0043280;positive regulation of caspase activity;0.00156640680006382!GO:0008186;RNA-dependent ATPase activity;0.0016358145748262!GO:0002757;immune response-activating signal transduction;0.0016358145748262!GO:0009117;nucleotide metabolic process;0.00176340997140631!GO:0051090;regulation of transcription factor activity;0.00200577655488489!GO:0019221;cytokine and chemokine mediated signaling pathway;0.00201201394377855!GO:0043087;regulation of GTPase activity;0.00213122880488173!GO:0060090;molecular adaptor activity;0.0021356687792041!GO:0000139;Golgi membrane;0.00241976176957765!GO:0002520;immune system development;0.00246652096894984!GO:0018193;peptidyl-amino acid modification;0.00249595832092686!GO:0042990;regulation of transcription factor import into nucleus;0.0026079210091345!GO:0042991;transcription factor import into nucleus;0.0026079210091345!GO:0002274;myeloid leukocyte activation;0.0026141409731074!GO:0005761;mitochondrial ribosome;0.00261659457606128!GO:0000313;organellar ribosome;0.00261659457606128!GO:0009611;response to wounding;0.0026897204924355!GO:0009719;response to endogenous stimulus;0.00305987658652377!GO:0031968;organelle outer membrane;0.00321217353973944!GO:0031072;heat shock protein binding;0.00321268238918839!GO:0022415;viral reproductive process;0.00323902948361128!GO:0042254;ribosome biogenesis and assembly;0.00340224934875516!GO:0006350;transcription;0.0034944979684504!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00352190379889509!GO:0019867;outer membrane;0.00352806738576804!GO:0045454;cell redox homeostasis;0.00353185766467161!GO:0002764;immune response-regulating signal transduction;0.00360910026858871!GO:0042110;T cell activation;0.00363205513806806!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00370410160755013!GO:0004812;aminoacyl-tRNA ligase activity;0.00370410160755013!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00370410160755013!GO:0006099;tricarboxylic acid cycle;0.00392141184456592!GO:0046356;acetyl-CoA catabolic process;0.00392141184456592!GO:0002521;leukocyte differentiation;0.00416102995899381!GO:0016251;general RNA polymerase II transcription factor activity;0.00421544663344838!GO:0004004;ATP-dependent RNA helicase activity;0.0042293196242825!GO:0048487;beta-tubulin binding;0.00432643716087537!GO:0006352;transcription initiation;0.00445113792563104!GO:0043623;cellular protein complex assembly;0.00450060592013795!GO:0006091;generation of precursor metabolites and energy;0.00450844577476864!GO:0046649;lymphocyte activation;0.00461895473660901!GO:0003702;RNA polymerase II transcription factor activity;0.00464039745024818!GO:0048534;hemopoietic or lymphoid organ development;0.00465862337378871!GO:0030658;transport vesicle membrane;0.00481359050332562!GO:0045045;secretory pathway;0.00492180780269164!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00493807796857933!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00494970893377558!GO:0019377;glycolipid catabolic process;0.00521168580418556!GO:0002252;immune effector process;0.00529637154749727!GO:0033673;negative regulation of kinase activity;0.00537667907475396!GO:0006469;negative regulation of protein kinase activity;0.00537667907475396!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0054468459891258!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0054468459891258!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0054468459891258!GO:0004185;serine carboxypeptidase activity;0.0054468459891258!GO:0043038;amino acid activation;0.00548516201854226!GO:0006418;tRNA aminoacylation for protein translation;0.00548516201854226!GO:0043039;tRNA aminoacylation;0.00548516201854226!GO:0051187;cofactor catabolic process;0.0057083975564867!GO:0004197;cysteine-type endopeptidase activity;0.00573704109726354!GO:0005813;centrosome;0.00607472070930114!GO:0006607;NLS-bearing substrate import into nucleus;0.00607472070930114!GO:0019904;protein domain specific binding;0.0062232460515479!GO:0001775;cell activation;0.0062232460515479!GO:0006891;intra-Golgi vesicle-mediated transport;0.00630800066288313!GO:0001817;regulation of cytokine production;0.00642109397184874!GO:0006458;'de novo' protein folding;0.0064700614760474!GO:0051084;'de novo' posttranslational protein folding;0.0064700614760474!GO:0008383;manganese superoxide dismutase activity;0.00664815025590335!GO:0001315;age-dependent response to reactive oxygen species;0.00664815025590335!GO:0051348;negative regulation of transferase activity;0.00686410845488689!GO:0046966;thyroid hormone receptor binding;0.00697567500855694!GO:0030029;actin filament-based process;0.00731535976722028!GO:0016363;nuclear matrix;0.00753912248170617!GO:0042802;identical protein binding;0.00753912248170617!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.00770184639348101!GO:0051345;positive regulation of hydrolase activity;0.00782002123363364!GO:0031901;early endosome membrane;0.00792982969682121!GO:0030218;erythrocyte differentiation;0.00796792059590144!GO:0002440;production of molecular mediator of immune response;0.00823349773897782!GO:0006333;chromatin assembly or disassembly;0.00833066414907126!GO:0032386;regulation of intracellular transport;0.0085913767851067!GO:0003725;double-stranded RNA binding;0.00886049038454971!GO:0006399;tRNA metabolic process;0.0092649303594005!GO:0006084;acetyl-CoA metabolic process;0.0095809361174825!GO:0006665;sphingolipid metabolic process;0.0097791648219833!GO:0019883;antigen processing and presentation of endogenous antigen;0.00980942107049309!GO:0031625;ubiquitin protein ligase binding;0.00995486680415689!GO:0030867;rough endoplasmic reticulum membrane;0.010486894413369!GO:0046467;membrane lipid biosynthetic process;0.0106139599766946!GO:0001819;positive regulation of cytokine production;0.0106210454630576!GO:0009165;nucleotide biosynthetic process;0.0106210454630576!GO:0005484;SNAP receptor activity;0.0106647410355116!GO:0033367;protein localization in mast cell secretory granule;0.0106647410355116!GO:0033365;protein localization in organelle;0.0106647410355116!GO:0033371;T cell secretory granule organization and biogenesis;0.0106647410355116!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0106647410355116!GO:0033375;protease localization in T cell secretory granule;0.0106647410355116!GO:0042629;mast cell granule;0.0106647410355116!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0106647410355116!GO:0033364;mast cell secretory granule organization and biogenesis;0.0106647410355116!GO:0033380;granzyme B localization in T cell secretory granule;0.0106647410355116!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0106647410355116!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0106647410355116!GO:0033368;protease localization in mast cell secretory granule;0.0106647410355116!GO:0033366;protein localization in secretory granule;0.0106647410355116!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0106647410355116!GO:0033374;protein localization in T cell secretory granule;0.0106647410355116!GO:0032318;regulation of Ras GTPase activity;0.0109039071151341!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0110235349425757!GO:0009109;coenzyme catabolic process;0.0111111712051477!GO:0005070;SH3/SH2 adaptor activity;0.0112377964435693!GO:0043021;ribonucleoprotein binding;0.0112377964435693!GO:0046466;membrane lipid catabolic process;0.0112525857436502!GO:0002237;response to molecule of bacterial origin;0.0112632622385232!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0114986546866496!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0116285146526951!GO:0030660;Golgi-associated vesicle membrane;0.0116632836404528!GO:0019882;antigen processing and presentation;0.0119872823203106!GO:0006749;glutathione metabolic process;0.012038854510792!GO:0030518;steroid hormone receptor signaling pathway;0.0120757924400899!GO:0030134;ER to Golgi transport vesicle;0.0122266314447584!GO:0000209;protein polyubiquitination;0.0122332029742533!GO:0030127;COPII vesicle coat;0.0125166757087406!GO:0012507;ER to Golgi transport vesicle membrane;0.0125166757087406!GO:0015631;tubulin binding;0.0125174664480644!GO:0016779;nucleotidyltransferase activity;0.0126107034315164!GO:0030041;actin filament polymerization;0.0127210356567556!GO:0000785;chromatin;0.0127282669204493!GO:0046479;glycosphingolipid catabolic process;0.0127357403826931!GO:0000287;magnesium ion binding;0.0129868109640022!GO:0051252;regulation of RNA metabolic process;0.0131227071263565!GO:0051098;regulation of binding;0.0134281636183873!GO:0032763;regulation of mast cell cytokine production;0.0134777740403325!GO:0032762;mast cell cytokine production;0.0134777740403325!GO:0008637;apoptotic mitochondrial changes;0.0134777740403325!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0135050274065565!GO:0051092;activation of NF-kappaB transcription factor;0.0138620283596766!GO:0045792;negative regulation of cell size;0.01400647954384!GO:0002467;germinal center formation;0.0143383111162655!GO:0043433;negative regulation of transcription factor activity;0.0145620186003915!GO:0030118;clathrin coat;0.0147651983759297!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0147809661541072!GO:0019079;viral genome replication;0.0147935808269927!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.0149212469733856!GO:0004860;protein kinase inhibitor activity;0.0149212469733856!GO:0019220;regulation of phosphate metabolic process;0.0149228751021857!GO:0051174;regulation of phosphorus metabolic process;0.0149228751021857!GO:0030027;lamellipodium;0.0150192021649859!GO:0019210;kinase inhibitor activity;0.0154048886509992!GO:0030521;androgen receptor signaling pathway;0.0156877653576568!GO:0030133;transport vesicle;0.0156940140656223!GO:0005815;microtubule organizing center;0.0160741571248443!GO:0048500;signal recognition particle;0.016140247297786!GO:0043621;protein self-association;0.0162104984733378!GO:0006611;protein export from nucleus;0.016239319500012!GO:0030308;negative regulation of cell growth;0.0165094919448742!GO:0045639;positive regulation of myeloid cell differentiation;0.016541742837033!GO:0016791;phosphoric monoester hydrolase activity;0.0183717297352058!GO:0019318;hexose metabolic process;0.0189496506669655!GO:0051085;chaperone cofactor-dependent protein folding;0.0193699577911594!GO:0008139;nuclear localization sequence binding;0.0194076366684637!GO:0005048;signal sequence binding;0.0197466906590482!GO:0003690;double-stranded DNA binding;0.0200740265282429!GO:0002250;adaptive immune response;0.0202066317373876!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0202066317373876!GO:0000082;G1/S transition of mitotic cell cycle;0.0204279186912651!GO:0017091;AU-rich element binding;0.0205753922393649!GO:0050779;RNA destabilization;0.0205753922393649!GO:0000289;poly(A) tail shortening;0.0205753922393649!GO:0019901;protein kinase binding;0.0206561202403266!GO:0003727;single-stranded RNA binding;0.0206561202403266!GO:0006354;RNA elongation;0.0206733418431966!GO:0004177;aminopeptidase activity;0.0208908174796966!GO:0030224;monocyte differentiation;0.0210438189085429!GO:0046979;TAP2 binding;0.0214463613920939!GO:0046977;TAP binding;0.0214463613920939!GO:0046978;TAP1 binding;0.0214463613920939!GO:0048002;antigen processing and presentation of peptide antigen;0.0214498601728486!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.021510901357792!GO:0045047;protein targeting to ER;0.021510901357792!GO:0030503;regulation of cell redox homeostasis;0.0215712722372363!GO:0002224;toll-like receptor signaling pathway;0.0215987990755908!GO:0002221;pattern recognition receptor signaling pathway;0.0215987990755908!GO:0050900;leukocyte migration;0.021662782041623!GO:0006644;phospholipid metabolic process;0.0218883517718063!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0219649469767079!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0221661947939836!GO:0005996;monosaccharide metabolic process;0.0221773064941892!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0229191880911323!GO:0030693;caspase activity;0.0229195703460496!GO:0030176;integral to endoplasmic reticulum membrane;0.0229195703460496!GO:0002443;leukocyte mediated immunity;0.0229555295862971!GO:0006414;translational elongation;0.0231786887724796!GO:0008629;induction of apoptosis by intracellular signals;0.0233643033484144!GO:0019843;rRNA binding;0.0236526340281223!GO:0006650;glycerophospholipid metabolic process;0.024189374695045!GO:0043022;ribosome binding;0.0248029900482504!GO:0008333;endosome to lysosome transport;0.0250770576755969!GO:0043488;regulation of mRNA stability;0.0254681836855666!GO:0043487;regulation of RNA stability;0.0254681836855666!GO:0045646;regulation of erythrocyte differentiation;0.0256768951547568!GO:0051059;NF-kappaB binding;0.0257518257205815!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0261398844176677!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0261398844176677!GO:0016072;rRNA metabolic process;0.0262675630748499!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0269354506572293!GO:0005905;coated pit;0.027588882855403!GO:0008361;regulation of cell size;0.0278483880727408!GO:0045113;regulation of integrin biosynthetic process;0.0280711219399002!GO:0045112;integrin biosynthetic process;0.0280711219399002!GO:0019783;small conjugating protein-specific protease activity;0.028077609565472!GO:0008286;insulin receptor signaling pathway;0.0282535572692604!GO:0030663;COPI coated vesicle membrane;0.0283489099867611!GO:0030126;COPI vesicle coat;0.0283489099867611!GO:0042613;MHC class II protein complex;0.0284215870449127!GO:0015036;disulfide oxidoreductase activity;0.0284215870449127!GO:0005788;endoplasmic reticulum lumen;0.0285668024310138!GO:0006364;rRNA processing;0.0285668024310138!GO:0043300;regulation of leukocyte degranulation;0.0288435359497731!GO:0000118;histone deacetylase complex;0.028943293453765!GO:0050851;antigen receptor-mediated signaling pathway;0.028943293453765!GO:0000339;RNA cap binding;0.0291454192442977!GO:0051091;positive regulation of transcription factor activity;0.0291706654113655!GO:0017166;vinculin binding;0.0291706654113655!GO:0030137;COPI-coated vesicle;0.0293892732065569!GO:0015923;mannosidase activity;0.0295012434293348!GO:0050811;GABA receptor binding;0.0295012434293348!GO:0000165;MAPKKK cascade;0.0295012434293348!GO:0042348;NF-kappaB import into nucleus;0.0295610126991218!GO:0042345;regulation of NF-kappaB import into nucleus;0.0295610126991218!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.0303381952390253!GO:0002819;regulation of adaptive immune response;0.0303381952390253!GO:0030384;phosphoinositide metabolic process;0.0312425677017883!GO:0016605;PML body;0.0334962288238464!GO:0051247;positive regulation of protein metabolic process;0.0336322265781783!GO:0048146;positive regulation of fibroblast proliferation;0.0343902208042903!GO:0006007;glucose catabolic process;0.0346104209312905!GO:0042221;response to chemical stimulus;0.0348105564223824!GO:0032760;positive regulation of tumor necrosis factor production;0.0348634028229104!GO:0004843;ubiquitin-specific protease activity;0.0349825055207938!GO:0048471;perinuclear region of cytoplasm;0.0353532214904872!GO:0006405;RNA export from nucleus;0.0360498147495279!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0362404876414157!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0363490693771141!GO:0043407;negative regulation of MAP kinase activity;0.0365596280272374!GO:0008287;protein serine/threonine phosphatase complex;0.0367591274028027!GO:0004722;protein serine/threonine phosphatase activity;0.0370247282995416!GO:0016491;oxidoreductase activity;0.0374962675751658!GO:0002682;regulation of immune system process;0.0375865013330865!GO:0008312;7S RNA binding;0.0377752643002134!GO:0044255;cellular lipid metabolic process;0.038107858470629!GO:0005694;chromosome;0.0384053659316501!GO:0006914;autophagy;0.0386677895226433!GO:0004563;beta-N-acetylhexosaminidase activity;0.0386677895226433!GO:0005152;interleukin-1 receptor antagonist activity;0.0389051160668492!GO:0030353;fibroblast growth factor receptor antagonist activity;0.0389051160668492!GO:0003746;translation elongation factor activity;0.0391990489320031!GO:0051101;regulation of DNA binding;0.0394033525120637!GO:0008624;induction of apoptosis by extracellular signals;0.0394453328860713!GO:0048144;fibroblast proliferation;0.0396939307132875!GO:0048145;regulation of fibroblast proliferation;0.0396939307132875!GO:0046426;negative regulation of JAK-STAT cascade;0.0398074483791984!GO:0000096;sulfur amino acid metabolic process;0.0399006258729372!GO:0045449;regulation of transcription;0.0401904827248158!GO:0006984;ER-nuclear signaling pathway;0.0402737393884122!GO:0006689;ganglioside catabolic process;0.0404850760066369!GO:0002444;myeloid leukocyte mediated immunity;0.0404850760066369!GO:0000278;mitotic cell cycle;0.041205715264783!GO:0006509;membrane protein ectodomain proteolysis;0.0414094172231619!GO:0033619;membrane protein proteolysis;0.0414094172231619!GO:0005869;dynactin complex;0.0419055989384016!GO:0009306;protein secretion;0.0423004371149175!GO:0035035;histone acetyltransferase binding;0.04242228405064!GO:0046578;regulation of Ras protein signal transduction;0.0429881648543297!GO:0005669;transcription factor TFIID complex;0.043099096311766!GO:0030258;lipid modification;0.043099096311766!GO:0033033;negative regulation of myeloid cell apoptosis;0.043099096311766!GO:0001803;regulation of type III hypersensitivity;0.043099096311766!GO:0032733;positive regulation of interleukin-10 production;0.043099096311766!GO:0033025;regulation of mast cell apoptosis;0.043099096311766!GO:0001805;positive regulation of type III hypersensitivity;0.043099096311766!GO:0033023;mast cell homeostasis;0.043099096311766!GO:0002431;Fc receptor mediated stimulatory signaling pathway;0.043099096311766!GO:0033032;regulation of myeloid cell apoptosis;0.043099096311766!GO:0001802;type III hypersensitivity;0.043099096311766!GO:0033028;myeloid cell apoptosis;0.043099096311766!GO:0042590;antigen processing and presentation of exogenous peptide antigen via MHC class I;0.043099096311766!GO:0033026;negative regulation of mast cell apoptosis;0.043099096311766!GO:0033024;mast cell apoptosis;0.043099096311766!GO:0042611;MHC protein complex;0.0432486127153275!GO:0016311;dephosphorylation;0.0437925216013084!GO:0015980;energy derivation by oxidation of organic compounds;0.0446757077626045!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0446757077626045!GO:0006465;signal peptide processing;0.0446757077626045!GO:0051056;regulation of small GTPase mediated signal transduction;0.0447149609207082!GO:0008538;proteasome activator activity;0.0448047252371762!GO:0004715;non-membrane spanning protein tyrosine kinase activity;0.0450282794636733!GO:0051235;maintenance of localization;0.0457488619221991!GO:0005684;U2-dependent spliceosome;0.0461203764441545!GO:0006351;transcription, DNA-dependent;0.0461203764441545!GO:0045926;negative regulation of growth;0.0466284070515057!GO:0004702;receptor signaling protein serine/threonine kinase activity;0.0473744821074126!GO:0008656;caspase activator activity;0.0474215065952372!GO:0030522;intracellular receptor-mediated signaling pathway;0.0477145295211471!GO:0002697;regulation of immune effector process;0.0479720935954828!GO:0042108;positive regulation of cytokine biosynthetic process;0.0480511324340411!GO:0030217;T cell differentiation;0.0483187119100037!GO:0042325;regulation of phosphorylation;0.0483187119100037!GO:0007162;negative regulation of cell adhesion;0.0483457249786512!GO:0045576;mast cell activation;0.0483744067563492!GO:0032774;RNA biosynthetic process;0.0492160606738689!GO:0002684;positive regulation of immune system process;0.0492160606738689!GO:0004218;cathepsin S activity;0.0492160606738689!GO:0008017;microtubule binding;0.0496465381558668
|sample_id=11862
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=
|top_motifs=STAT2,4,6:5.45297593062;STAT5{A,B}:4.62149317811;FOSL2:4.48547695172;NFE2:4.21591678191;NFE2L2:4.18187291448;IRF7:4.11582861704;BACH2:4.06153033299;IRF1,2:3.94178398762;FOS_FOS{B,L1}_JUN{B,D}:3.92615483362;CEBPA,B_DDIT3:3.87116035644;SREBF1,2:3.70632806903;STAT1,3:3.57931852275;PAX2:3.35835019254;HLF:3.33742767075;SPIB:3.1126349864;EP300:2.87988418288;SPI1:2.83265300068;ATF4:2.79397778213;ATF5_CREB3:2.6046800988;ATF6:2.6030106435;NFIL3:2.55504109993;NFE2L1:2.52968455886;FOXP3:2.50278038622;ETS1,2:2.48659197548;NANOG{mouse}:2.36020663155;DMAP1_NCOR{1,2}_SMARC:2.23670717718;CREB1:2.11608145402;ZBTB16:2.09850222636;FOXN1:2.09653199408;CDX1,2,4:2.07689092599;NR1H4:1.8955931006;RUNX1..3:1.8381749355;HIF1A:1.72828835236;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.64758557295;NFKB1_REL_RELA:1.63051990108;JUN:1.58014677565;PITX1..3:1.47292781513;HMGA1,2:1.35854833821;ELF1,2,4:1.32856726417;NR6A1:1.31292682713;PAX4:1.28427897238;HBP1_HMGB_SSRP1_UBTF:1.25782423259;HSF1,2:1.23321560652;ALX4:1.17564936601;PDX1:1.15548660097;TGIF1:1.15001225817;PAX3,7:1.05979574107;MAFB:0.971254758896;ATF2:0.914482927133;ESRRA:0.87066489268;BPTF:0.789570630813;IKZF2:0.746235833183;NFATC1..3:0.715444582034;FOXP1:0.706512223678;FOXD3:0.650059169209;RXRA_VDR{dimer}:0.627484881111;SRF:0.62586467092;HMX1:0.611700509913;XBP1:0.560632673206;HOX{A5,B5}:0.474680095625;PRDM1:0.450919900861;TLX2:0.428918764864;PAX8:0.378002669883;FOXO1,3,4:0.346576375012;TFCP2:0.230151480054;GLI1..3:0.189242470116;PPARG:0.179121872317;GATA4:0.118538521637;RXR{A,B,G}:0.0722471909329;RFX2..5_RFXANK_RFXAP:-0.0149375780741;MYB:-0.0227900297553;DBP:-0.0443018999624;HES1:-0.0611436094763;NKX6-1,2:-0.0697000973878;PAX1,9:-0.083147832648;TBP:-0.0867144851264;AHR_ARNT_ARNT2:-0.103438156999;EN1,2:-0.107848661477;EGR1..3:-0.120023980267;FOX{D1,D2}:-0.125297398182;FOXL1:-0.139031057782;IKZF1:-0.188541530017;NKX2-2,8:-0.196750872543;MEF2{A,B,C,D}:-0.217236103457;ESR1:-0.274264082355;FOXM1:-0.359759253981;ALX1:-0.431443481911;NKX3-2:-0.442518370083;NANOG:-0.500894792522;SMAD1..7,9:-0.517687407913;HOX{A6,A7,B6,B7}:-0.536775994927;T:-0.578587613205;RREB1:-0.589032396543;TAL1_TCF{3,4,12}:-0.598746698845;OCT4_SOX2{dimer}:-0.670209566724;MZF1:-0.684668181293;SPZ1:-0.689702587426;POU2F1..3:-0.716917743314;HOXA9_MEIS1:-0.807129790861;RBPJ:-0.815676350969;REST:-0.873866571419;TFAP4:-0.898681886598;NKX3-1:-0.934077604495;FOX{F1,F2,J1}:-0.957338681417;TEF:-0.970535407182;VSX1,2:-1.00312135932;NR3C1:-1.02462246947;HNF4A_NR2F1,2:-1.02642653952;ZNF384:-1.05740936792;AIRE:-1.06399326667;HNF1A:-1.10477999593;RORA:-1.13248267338;SOX2:-1.15007076415;POU5F1:-1.1517582445;MED-1{core}:-1.16577519305;MYFfamily:-1.19020749467;GZF1:-1.24530508683;TOPORS:-1.26053077817;ZNF238:-1.26625306929;PRRX1,2:-1.27404609436;PATZ1:-1.27887595265;NHLH1,2:-1.29369044394;POU6F1:-1.35819568691;CUX2:-1.36725120106;SP1:-1.36978884804;GATA6:-1.3726478664;PAX6:-1.39269034091;ZBTB6:-1.40154549138;RFX1:-1.40154571403;XCPE1{core}:-1.40513471496;FOXA2:-1.43369399798;UFEwm:-1.49926123097;MAZ:-1.50871431784;SOX5:-1.51681617619;TFAP2B:-1.53038127633;ZFP161:-1.5579454956;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.55939201815;MTE{core}:-1.56117688686;MYOD1:-1.59318316163;TEAD1:-1.60132646763;MTF1:-1.60396901205;ZEB1:-1.61445873698;SOX{8,9,10}:-1.61758688916;POU1F1:-1.64016379068;NKX2-3_NKX2-5:-1.6819063722;GTF2A1,2:-1.71909685506;NKX2-1,4:-1.71920378123;TP53:-1.75269295685;E2F1..5:-1.75539116954;TFAP2{A,C}:-1.7608280266;BREu{core}:-1.79097323352;GTF2I:-1.81467896134;GCM1,2:-1.84483975081;MYBL2:-1.85397474306;ZIC1..3:-1.88365371522;EVI1:-1.88772775348;TLX1..3_NFIC{dimer}:-1.89139419606;NFIX:-1.89577583902;SNAI1..3:-1.89946733385;ELK1,4_GABP{A,B1}:-1.93030394228;KLF4:-1.93987550307;CRX:-1.96403162113;HOX{A4,D4}:-1.98544473281;ARID5B:-2.00004470397;TFDP1:-2.00344097217;ZNF148:-2.04205964199;ADNP_IRX_SIX_ZHX:-2.05457839864;ONECUT1,2:-2.0999931741;GFI1B:-2.13845101951;HIC1:-2.20862516939;LMO2:-2.24284795743;NFY{A,B,C}:-2.24983580747;FOX{I1,J2}:-2.2672454031;TBX4,5:-2.30906890731;POU3F1..4:-2.31067848783;bHLH_family:-2.31916468992;ZNF423:-2.33519270979;EBF1:-2.363385924;HAND1,2:-2.41897852041;CDC5L:-2.54136279137;PAX5:-2.56515510662;PBX1:-2.58143990483;SOX17:-2.72698729119;AR:-2.76786029215;FOXQ1:-2.85508254385;GFI1:-2.87036007989;NRF1:-2.92457674693;NR5A1,2:-2.99624410319;YY1:-3.01574507341;LEF1_TCF7_TCF7L1,2:-3.48653484713;ZNF143:-3.54104977063;LHX3,4:-3.59610803315
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11862-125A8;search_select_hide=table117:FF:11862-125A8
}}
}}

Latest revision as of 18:24, 4 June 2020

Name:CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor1
Species:Human (Homo sapiens)
Library ID:CNhs13467
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexfemale
age69
cell typemonocyte
cell lineNA
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberD3-3
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004744
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13467 CAGE DRX008156 DRR009028
Accession ID Hg19

Library idBAMCTSS
CNhs13467 DRZ000453 DRZ001838
Accession ID Hg38

Library idBAMCTSS
CNhs13467 DRZ011803 DRZ013188
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.479
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.00974
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.78
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.472
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.177
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.0973
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.353
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.546
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.891
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.302
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.546
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.353
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0.302
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.45
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.464
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.296
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.701
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.273
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.333
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.363
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.244
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.284
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0.655
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.796
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0.98
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.894
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.512
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.598
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.962
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.517
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.441
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.403
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.896
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0.353
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.363
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.709
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.791
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.302
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.78
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.353
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.21
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.63
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.273
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.399
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.177
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.831
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0.877
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.244
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.113
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.244
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.244
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13467

Jaspar motifP-value
MA0002.21.50802e-6
MA0003.10.787
MA0004.10.171
MA0006.10.629
MA0007.10.705
MA0009.10.228
MA0014.10.901
MA0017.10.119
MA0018.20.0726
MA0019.10.526
MA0024.18.07187e-4
MA0025.10.0232
MA0027.10.774
MA0028.10.143
MA0029.10.104
MA0030.10.0652
MA0031.10.359
MA0035.20.135
MA0038.10.126
MA0039.20.808
MA0040.10.519
MA0041.10.111
MA0042.10.281
MA0043.11.06923e-6
MA0046.10.012
MA0047.20.638
MA0048.10.557
MA0050.12.02491e-20
MA0051.16.88155e-12
MA0052.10.0519
MA0055.10.664
MA0057.10.569
MA0058.10.0551
MA0059.10.138
MA0060.12.43199e-9
MA0061.12.90346e-6
MA0062.20.459
MA0065.20.0195
MA0066.10.0718
MA0067.11.52463e-6
MA0068.10.373
MA0069.10.585
MA0070.10.0118
MA0071.10.406
MA0072.10.972
MA0073.10.555
MA0074.10.138
MA0076.10.149
MA0077.10.161
MA0078.10.439
MA0079.20.223
MA0080.21.10366e-12
MA0081.12.86209e-4
MA0083.10.452
MA0084.10.946
MA0087.10.803
MA0088.10.453
MA0090.10.34
MA0091.10.584
MA0092.10.352
MA0093.10.214
MA0099.24.10853e-43
MA0100.10.716
MA0101.13.25159e-5
MA0102.26.46309e-7
MA0103.10.267
MA0104.20.359
MA0105.12.90705e-10
MA0106.10.984
MA0107.15.61104e-6
MA0108.20.147
MA0111.10.609
MA0112.22.02908e-4
MA0113.10.631
MA0114.10.278
MA0115.10.847
MA0116.14.06752e-4
MA0117.10.0716
MA0119.10.185
MA0122.10.958
MA0124.10.72
MA0125.10.261
MA0131.10.571
MA0135.10.35
MA0136.12.33104e-13
MA0137.21.06974e-10
MA0138.20.542
MA0139.10.895
MA0140.10.139
MA0141.10.131
MA0142.10.844
MA0143.10.897
MA0144.14.24584e-5
MA0145.10.504
MA0146.10.202
MA0147.10.493
MA0148.10.641
MA0149.10.276
MA0150.11.6167e-20
MA0152.10.659
MA0153.10.00236
MA0154.10.00257
MA0155.10.955
MA0156.11.10842e-8
MA0157.10.971
MA0159.10.0192
MA0160.10.0332
MA0162.10.683
MA0163.11.18406e-7
MA0164.10.539
MA0258.10.00618
MA0259.10.996



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13467

Novel motifP-value
10.0898
100.0129
1000.934
1010.988
1020.822
1030.401
1040.604
1050.204
1069.23421e-4
1070.27
1080.938
1090.294
110.15
1100.121
1110.0256
1120.376
1130.523
1140.0134
1150.288
1160.821
1170.0385
1180.168
1190.137
120.349
1200.968
1210.501
1220.736
1230.0807
1240.637
1250.358
1260.292
1270.421
1280.039
1290.492
130.0767
1300.0724
1310.768
1320.0765
1330.569
1340.596
1350.746
1360.887
1370.0152
1380.223
1390.0543
140.421
1400.316
1410.271
1420.0982
1430.0457
1440.812
1450.269
1460.547
1470.516
1480.0176
1490.823
150.177
1500.438
1510.418
1520.216
1530.734
1540.435
1550.719
1560.499
1570.53
1580.0165
1590.929
160.294
1600.408
1610.605
1620.223
1630.124
1640.0727
1650.179
1660.633
1670.104
1680.346
1690.0117
170.229
180.175
190.428
20.507
200.157
210.512
220.365
230.0437
240.321
250.421
260.0476
270.536
280.48
290.212
30.101
300.393
310.888
320.929
330.284
340.786
350.151
360.0885
370.0724
380.407
390.863
40.812
400.207
410.0123
420.366
430.032
440.941
450.965
460.184
470.539
480.526
490.123
50.327
500.976
510.523
520.398
530.465
540.404
550.551
560.711
570.742
580.138
590.355
60.674
600.0518
610.704
620.0728
630.482
640.397
650.26
660.24
670.619
680.803
690.462
70.295
700.0343
710.0305
720.217
730.166
740.0896
750.093
760.133
770.57
780.0784
790.2
80.394
800.381
810.377
820.173
830.0697
840.246
850.0191
860.0677
870.98
880.578
890.327
90.531
900.0665
910.255
920.26
930.445
940.0684
950.348
960.666
970.792
980.135
990.0406



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13467


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000631 (trehalose dimycolate (TDM) treatment sample)
0011444 (CD14-positive monocytes - treated with Trehalose dimycolate (TDM) sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

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