FF:11867-125B4: Difference between revisions

Latest revision as of 18:24, 4 June 2020

Name:	CD14+ monocytes - treated with Cryptococcus, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13472
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	female
age	69
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D3-8
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005251

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13472		CAGE		DRX008144		DRR009016

Accession ID Hg19

Library id		BAM		CTSS
CNhs13472		DRZ000441		DRZ001826

Accession ID Hg38

Library id		BAM		CTSS
CNhs13472		DRZ011791		DRZ013176

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.288
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.00693
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.589
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.493
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.139
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0749
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.328
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.43
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.891
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.194
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.328
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.244
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.401
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.383
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.193
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.711
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.244
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.288
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.397
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.194
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.305
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.582
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.83
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.365
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.941
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.43
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.609
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.898
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.411
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.328
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.467
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.698
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.244
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.295
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.726
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.632
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.244
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.835
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.365
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.139
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.633
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.102
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.308
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.417
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.139
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.895
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.139
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.288
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.0812
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.194
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.244
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13472

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.1074e-7
MA0003.1	MA0003.1	0.307
MA0004.1	MA0004.1	0.446
MA0006.1	MA0006.1	0.797
MA0007.1	MA0007.1	0.757
MA0009.1	MA0009.1	0.196
MA0014.1	MA0014.1	0.938
MA0017.1	MA0017.1	0.0495
MA0018.2	MA0018.2	0.188
MA0019.1	MA0019.1	0.539
MA0024.1	MA0024.1	0.00146
MA0025.1	MA0025.1	0.0196
MA0027.1	MA0027.1	0.965
MA0028.1	MA0028.1	0.171
MA0029.1	MA0029.1	0.283
MA0030.1	MA0030.1	0.447
MA0031.1	MA0031.1	0.611
MA0035.2	MA0035.2	0.216
MA0038.1	MA0038.1	0.0337
MA0039.2	MA0039.2	0.709
MA0040.1	MA0040.1	0.244
MA0041.1	MA0041.1	0.165
MA0042.1	MA0042.1	0.542
MA0043.1	MA0043.1	3.05495e-4
MA0046.1	MA0046.1	0.0319
MA0047.2	MA0047.2	0.915
MA0048.1	MA0048.1	0.882
MA0050.1	MA0050.1	5.12377e-4
MA0051.1	MA0051.1	0.167
MA0052.1	MA0052.1	0.319
MA0055.1	MA0055.1	0.74
MA0057.1	MA0057.1	0.65
MA0058.1	MA0058.1	0.248
MA0059.1	MA0059.1	0.348
MA0060.1	MA0060.1	5.11451e-12
MA0061.1	MA0061.1	4.59547e-5
MA0062.2	MA0062.2	0.581
MA0065.2	MA0065.2	0.00931
MA0066.1	MA0066.1	0.0202
MA0067.1	MA0067.1	6.86152e-4
MA0068.1	MA0068.1	0.184
MA0069.1	MA0069.1	0.839
MA0070.1	MA0070.1	0.0434
MA0071.1	MA0071.1	0.224
MA0072.1	MA0072.1	0.834
MA0073.1	MA0073.1	0.333
MA0074.1	MA0074.1	0.122
MA0076.1	MA0076.1	0.132
MA0077.1	MA0077.1	0.155
MA0078.1	MA0078.1	0.481
MA0079.2	MA0079.2	0.415
MA0080.2	MA0080.2	3.95088e-15
MA0081.1	MA0081.1	2.75899e-4
MA0083.1	MA0083.1	0.836
MA0084.1	MA0084.1	0.721
MA0087.1	MA0087.1	0.857
MA0088.1	MA0088.1	0.521
MA0090.1	MA0090.1	0.197
MA0091.1	MA0091.1	0.544
MA0092.1	MA0092.1	0.224
MA0093.1	MA0093.1	0.483
MA0099.2	MA0099.2	3.33048e-40
MA0100.1	MA0100.1	0.589
MA0101.1	MA0101.1	4.72259e-4
MA0102.2	MA0102.2	3.14091e-7
MA0103.1	MA0103.1	0.542
MA0104.2	MA0104.2	0.896
MA0105.1	MA0105.1	2.53292e-8
MA0106.1	MA0106.1	0.808
MA0107.1	MA0107.1	4.38552e-5
MA0108.2	MA0108.2	0.00813
MA0111.1	MA0111.1	0.458
MA0112.2	MA0112.2	5.22809e-5
MA0113.1	MA0113.1	0.77
MA0114.1	MA0114.1	0.201
MA0115.1	MA0115.1	0.763
MA0116.1	MA0116.1	2.92398e-4
MA0117.1	MA0117.1	0.18
MA0119.1	MA0119.1	0.317
MA0122.1	MA0122.1	0.857
MA0124.1	MA0124.1	0.938
MA0125.1	MA0125.1	0.284
MA0131.1	MA0131.1	0.408
MA0135.1	MA0135.1	0.718
MA0136.1	MA0136.1	6.24254e-15
MA0137.2	MA0137.2	0.721
MA0138.2	MA0138.2	0.859
MA0139.1	MA0139.1	0.996
MA0140.1	MA0140.1	0.118
MA0141.1	MA0141.1	0.0466
MA0142.1	MA0142.1	0.798
MA0143.1	MA0143.1	0.652
MA0144.1	MA0144.1	0.311
MA0145.1	MA0145.1	0.241
MA0146.1	MA0146.1	0.0803
MA0147.1	MA0147.1	0.924
MA0148.1	MA0148.1	0.828
MA0149.1	MA0149.1	0.199
MA0150.1	MA0150.1	1.46344e-15
MA0152.1	MA0152.1	0.518
MA0153.1	MA0153.1	0.0011
MA0154.1	MA0154.1	0.00204
MA0155.1	MA0155.1	0.58
MA0156.1	MA0156.1	2.44518e-7
MA0157.1	MA0157.1	0.967
MA0159.1	MA0159.1	0.0109
MA0160.1	MA0160.1	0.0246
MA0162.1	MA0162.1	0.667
MA0163.1	MA0163.1	2.91309e-7
MA0164.1	MA0164.1	0.561
MA0258.1	MA0258.1	0.00263
MA0259.1	MA0259.1	0.562

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13472

Novel motif	Logo	P-value
1	1	0.0921
10	10	0.0236
100	100	0.816
101	101	0.87
102	102	0.523
103	103	0.275
104	104	0.564
105	105	0.254
106	106	5.59661e-4
107	107	0.164
108	108	0.868
109	109	0.201
11	11	0.115
110	110	0.256
111	111	0.0201
112	112	0.242
113	113	0.586
114	114	0.011
115	115	0.427
116	116	0.717
117	117	0.0461
118	118	0.174
119	119	0.142
12	12	0.352
120	120	0.985
121	121	0.496
122	122	0.736
123	123	0.0857
124	124	0.53
125	125	0.395
126	126	0.218
127	127	0.295
128	128	0.0164
129	129	0.524
13	13	0.18
130	130	0.124
131	131	0.656
132	132	0.108
133	133	0.699
134	134	0.536
135	135	0.331
136	136	0.836
137	137	0.00948
138	138	0.192
139	139	0.018
14	14	0.467
140	140	0.0946
141	141	0.341
142	142	0.462
143	143	0.0171
144	144	0.684
145	145	0.4
146	146	0.439
147	147	0.423
148	148	0.00773
149	149	0.581
15	15	0.135
150	150	0.474
151	151	0.306
152	152	0.139
153	153	0.509
154	154	0.58
155	155	0.326
156	156	0.792
157	157	0.285
158	158	0.0556
159	159	0.918
16	16	0.303
160	160	0.356
161	161	0.474
162	162	0.531
163	163	0.188
164	164	0.0862
165	165	0.162
166	166	0.52
167	167	0.214
168	168	0.34
169	169	0.0073
17	17	0.165
18	18	0.11
19	19	0.272
2	2	0.974
20	20	0.336
21	21	0.349
22	22	0.219
23	23	0.0406
24	24	0.369
25	25	0.41
26	26	0.0328
27	27	0.974
28	28	0.494
29	29	0.274
3	3	0.0895
30	30	0.529
31	31	0.743
32	32	0.875
33	33	0.407
34	34	0.471
35	35	0.132
36	36	0.148
37	37	0.0717
38	38	0.331
39	39	0.682
4	4	0.851
40	40	0.184
41	41	0.0124
42	42	0.375
43	43	0.0332
44	44	0.757
45	45	0.698
46	46	0.118
47	47	0.456
48	48	0.398
49	49	0.0917
5	5	0.234
50	50	0.992
51	51	0.333
52	52	0.29
53	53	0.361
54	54	0.295
55	55	0.482
56	56	0.647
57	57	0.751
58	58	0.135
59	59	0.107
6	6	0.514
60	60	0.0379
61	61	0.49
62	62	0.049
63	63	0.434
64	64	0.396
65	65	0.184
66	66	0.193
67	67	0.444
68	68	0.639
69	69	0.888
7	7	0.266
70	70	0.0114
71	71	0.0318
72	72	0.251
73	73	0.13
74	74	0.101
75	75	0.0846
76	76	0.26
77	77	0.359
78	78	0.0685
79	79	0.0537
8	8	0.287
80	80	0.27
81	81	0.367
82	82	0.0732
83	83	0.26
84	84	0.423
85	85	0.00693
86	86	0.0626
87	87	0.496
88	88	0.614
89	89	0.175
9	9	0.319
90	90	0.0651
91	91	0.283
92	92	0.172
93	93	0.413
94	94	0.0301
95	95	0.31
96	96	0.377
97	97	0.914
98	98	0.127
99	99	0.168

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13472

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011105 human CD14-positive monocytes - treated with Cryptococcus sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000634 (Cryptococcus treatment sample)
0011105 (human CD14-positive monocytes - treated with Cryptococcus sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005251
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008144;DRR009016;DRZ000441;DRZ001826;DRZ011791;DRZ013176
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000634,FF:0011105
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.80!629.67!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.80!624.96!PLEK;;chr12:54778471..54778528,-!p1@ZNF385A!2.55!356.53!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.27!187.30!TFEC;;chr11:47399947..47399961,-!p3@SPI1!2.12!130.45!SPI1;;chr2:70142232..70142251,+!p1@MXD1!2.09!651.69!MXD1;;chr11:47400062..47400077,-!p2@SPI1!2.05!112.00!SPI1;;chr20:39317868..39317884,-!p1@MAFB!1.97!1024.04!MAFB;;chr1:25256756..25256774,-!p1@RUNX3!1.95!161.51!RUNX3;;chr11:47399996..47400014,-!p4@SPI1!1.90!77.74!SPI1;;chr16:85932760..85932775,+!p1@IRF8!1.87!73.98!IRF8;;chr10:64576105..64576133,-!p1@EGR2!1.85!137.98!EGR2;;chr10:35484053..35484076,+!p1@CREM!1.84!163.58!CREM;;chr11:47400032..47400043,-!p5@SPI1!1.84!68.90!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!1.84!68.90!OLIG1;;chr19:50432132..50432217,+!p2@ATF5!1.80!73.79!ATF5;;chr6:106534192..106534224,+!p1@PRDM1!1.79!166.03!PRDM1;;chr14:35872453..35872485,-!p2@NFKBIA!1.75!132.33!NFKBIA;;chr12:54778351..54778378,-!p6@ZNF385A!1.72!51.39!ZNF385A;;chr19:45971246..45971265,+!p1@FOSB!1.71!872.50!FOSB;;chr2:145277640..145277771,-!p1@ZEB2!1.71!632.49!ZEB2;;chr10:31288398..31288455,-!p2@ZNF438!1.69!54.97!ZNF438;;chr12:72056800..72056834,+!p1@THAP2!1.68!62.12!THAP2;;chr10:31288370..31288393,-!p3@ZNF438!1.60!38.59!ZNF438;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.57!35.95!ZBED1;;chr2:157189180..157189290,-!p1@NR4A2!1.55!170.92!NR4A2;;chr6:106534230..106534254,+!p2@PRDM1!1.54!81.51!PRDM1;;chr11:47400045..47400060,-!p6@SPI1!1.53!32.94!SPI1;;chr2:145275162..145275202,-!p2@ZEB2!1.52!183.72!ZEB2;;chr9:102584262..102584276,+!p1@NR4A3!1.51!68.33!NR4A3;;chr6:44233252..44233296,-!p1@NFKBIE!1.50!288.39!NFKBIE;;chr10:51572408..51572454,+!p3@NCOA4!1.50!172.99!NCOA4;;chr20:48599506..48599526,+!p1@SNAI1!1.48!181.84!SNAI1;;chr7:128577972..128578047,+!p1@IRF5!1.46!43.30!IRF5;;chr14:35873947..35873965,-!p1@NFKBIA!1.45!1657.29!NFKBIA;;chr7:50344289..50344323,+!p1@IKZF1!1.45!27.30!IKZF1;;chr10:51572339..51572376,+!p4@NCOA4!1.44!58.92!NCOA4;;chr12:72056749..72056767,+!p6@THAP2!1.44!29.37!THAP2;;chr19:45252008..45252024,+!p2@BCL3!1.43!83.58!BCL3;;chr9:102584159..102584174,+!p2@NR4A3!1.43!45.93!NR4A3;;chr21:36260295..36260310,-!p3@RUNX1!1.43!40.85!RUNX1;;chr16:31885093..31885165,+!p1@ZNF267!1.42!374.98!ZNF267;;chr12:52445218..52445237,+!p1@NR4A1!1.42!306.65!NR4A1;;chr13:41593425..41593480,-!p1@ELF1!1.40!149.65!ELF1;;chr12:72056773..72056796,+!p3@THAP2!1.39!30.31!THAP2;;chr6:144385698..144385742,-!p2@PLAGL1!1.39!28.80!PLAGL1;;chrX:129244454..129244488,-!p1@ELF4!1.38!159.25!ELF4;;chr11:47399920..47399931,-!p7@SPI1!1.37!22.21!SPI1;;chr14:35872962..35873025,-!p3@NFKBIA!1.36!54.40!NFKBIA;;chr2:145277882..145277967,-!p3@ZEB2!1.35!36.71!ZEB2;;chr2:70167296..70167306,+!p3@MXD1!1.35!32.38!MXD1;;chr12:48298765..48298783,-!p2@VDR!1.33!41.60!VDR;;chr20:48807351..48807384,+!p1@CEBPB!1.32!1964.50!CEBPB;;chr19:36391434..36391450,-!p1@NFKBID!1.32!38.21!NFKBID;;chr9:102584128..102584144,+!p3@NR4A3!1.32!37.65!NR4A3;;chr19:13213662..13213686,-!p1@LYL1!1.31!28.24!LYL1;;chr18:3449720..3449749,+!p2@TGIF1!1.30!39.91!TGIF1;;chr2:70314240..70314256,+!p4@PCBP1!1.30!38.59!PCBP1;;chr2:28618532..28618610,+!p4@FOSL2!1.30!31.81!FOSL2;;chr2:61108695..61108753,+!p1@REL!1.29!124.62!REL;;chr10:104155480..104155534,+!p2@NFKB2!1.29!116.90!NFKB2;;chr19:45250948..45250998,+!p3@BCL3!1.29!46.31!BCL3;;chr10:104155659..104155676,+!p4@NFKB2!1.29!22.78!NFKB2;;chr2:68592394..68592405,+!p2@PLEK!1.28!18.26!PLEK;;chr10:104154246..104154347,+!p3@NFKB2!1.27!106.73!NFKB2;;chr8:22550982..22550999,-!p1@EGR3!1.27!49.51!EGR3;;chr17:38497662..38497713,+!p4@RARA!1.27!20.52!RARA;;chr1:25256439..25256476,-!p3@RUNX3!1.27!17.51!RUNX3;;chr12:48298785..48298828,-!p1@VDR!1.26!89.23!VDR;;chr1:212782094..212782109,+!p1@ATF3!1.25!447.64!ATF3;;chr9:117150254..117150271,-!p1@AKNA!1.24!43.86!AKNA;;chr19:45251395..45251432,+!p8@BCL3!1.24!16.38!BCL3;;chr4:106068026..106068084,+!p1@TET2!1.23!141.37!TET2;;chr1:156470515..156470542,-!p2@MEF2D!1.23!81.89!MEF2D;;chr6:15246200..15246214,+!p2@JARID2!1.23!43.67!JARID2;;chr10:35484090..35484104,+!p6@CREM!1.23!15.81!CREM;;chr21:30671690..30671762,+!p2@BACH1!1.22!52.14!BACH1;;chr20:48807615..48807644,+!p6@CEBPB!1.22!25.79!CEBPB;;chr2:28615716..28615733,+!p1@FOSL2!1.21!705.34!FOSL2;;chr21:30671235..30671253,+!p1@BACH1!1.21!191.07!BACH1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.21!182.41!ZC3H12A;;chrX:129244430..129244442,-!p5@ELF4!1.21!15.25!ELF4;;chr1:157108130..157108173,-!p1@ETV3!1.20!106.17!ETV3;;chr4:103422499..103422632,+!p1@NFKB1!1.19!295.54!NFKB1;;chr12:11802753..11802834,+!p2@ETV6!1.18!69.27!ETV6;;chr6:391743..391759,+!p1@IRF4!1.18!14.31!IRF4;;chr2:97202480..97202499,+!p1@ARID5A!1.17!137.04!ARID5A;;chr12:96588219..96588263,+!p2@ELK3!1.17!98.07!ELK3;;chr12:96588279..96588299,+!p4@ELK3!1.17!64.57!ELK3;;chrX:153305787..153305807,-!p3@MECP2!1.17!13.93!MECP2;;chr21:36421535..36421610,-!p2@RUNX1!1.16!47.44!RUNX1;;chr19:19496539..19496576,+!p8@GATAD2A!1.16!23.53!GATAD2A;;chr18:3449618..3449634,+!p13@TGIF1!1.16!16.75!TGIF1;;chr7:115670792..115670797,-!p2@TFEC!1.16!13.55!TFEC;;chr2:238600998..238601013,+!p5@LRRFIP1!1.16!13.37!LRRFIP1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.15!71.53!LRRFIP1;;chr14:35872926..35872951,-!p4@NFKBIA!1.15!18.45!NFKBIA;;chr21:34398234..34398250,+!p1@OLIG2!1.15!13.18!OLIG2;;chr14:35872494..35872511,-!p5@NFKBIA!1.14!17.13!NFKBIA;;chr19:45254529..45254561,+!p10@BCL3!1.13!16.94!BCL3;;chr14:35872414..35872425,-!p7@NFKBIA!1.13!13.93!NFKBIA;;chr19:45251943..45252006,+!p1@BCL3!1.12!316.44!BCL3;;chr3:12329397..12329433,+!p2@PPARG!1.12!27.67!PPARG;;chr4:81104895..81104920,+!p2@PRDM8!1.12!18.45!PRDM8;;chr1:156470494..156470505,-!p3@MEF2D!1.12!17.69!MEF2D;;chr6:106535598..106535637,+!p7@PRDM1!1.12!12.24!PRDM1;;chr10:64018918..64018936,+!p2@ZNF365!1.11!11.86!ZNF365;;chr19:50432104..50432126,+!p6@ATF5!1.10!11.67!ATF5;;chr11:65430554..65430579,-!p3@RELA!1.09!28.80!RELA;;chr18:3449527..3449582,+!p6@TGIF1!1.09!21.46!TGIF1;;chr9:102584241..102584261,+!p4@NR4A3!1.09!17.51!NR4A3;;chr12:54694758..54694805,-!p1@NFE2!1.09!13.55!NFE2;;chr3:12330560..12330579,+!p1@PPARG!1.09!12.99!PPARG;;chr19:33793430..33793447,-!p1@CEBPA!1.08!46.87!CEBPA;;chr12:54785074..54785122,-!p2@ZNF385A!1.08!16.94!ZNF385A;;chr10:31288329..31288353,-!p7@ZNF438!1.08!11.11!ZNF438;;chr19:54058073..54058088,+!p1@ZNF331!1.08!11.11!ZNF331;;chr7:137620684..137620711,-!p4@CREB3L2!1.08!10.92!CREB3L2;;chr3:170075436..170075520,+!p1@SKIL!1.07!232.67!SKIL;;chr14:62162285..62162296,+!p3@HIF1A!1.07!56.47!HIF1A;;chr18:3449586..3449617,+!p8@TGIF1!1.07!17.51!TGIF1;;chr8:53373491..53373506,-!p4@ST18!1.07!10.73!ST18;;chr9:129567282..129567353,+!p1@ZBTB43!1.06!138.92!ZBTB43;;chr7:149470641..149470694,-!p1@ZNF467!1.06!48.00!ZNF467;;chr19:13213954..13214021,-!p4@LYL1!1.06!10.54!LYL1;;chr10:104155455..104155479,+!p1@NFKB2!1.05!150.59!NFKB2;;chr5:88178983..88179012,-!p1@MEF2C!1.05!80.00!MEF2C;;chr2:70142189..70142223,+!p2@MXD1!1.05!74.36!MXD1;;chr10:35484804..35484902,+!p2@CREM!1.05!39.53!CREM;;chr9:3525727..3525828,-!p2@RFX3!1.05!26.17!RFX3;;chr20:48807171..48807234,+!p4@CEBPB!1.05!22.59!CEBPB;;chr20:48807456..48807475,+!p3@CEBPB!1.05!19.95!CEBPB;;chr21:30672433..30672464,+!p6@BACH1!1.05!10.17!BACH1;;chr2:145277589..145277612,-!p12@ZEB2!1.05!10.17!ZEB2;;chr6:15246261..15246312,+!p1@JARID2!1.04!243.02!JARID2;;chr17:38498402..38498445,+!p3@RARA!1.04!36.52!RARA;;chr22:38597987..38598021,+!p2@MAFF!1.03!60.61!MAFF;;chr20:48807143..48807165,+!p11@CEBPB!1.03!14.68!CEBPB;;chr13:41593392..41593403,-!p7@ELF1!1.03!9.60!ELF1;;chr17:38474489..38474548,+!p1@RARA!1.02!304.39!RARA;;chr9:110252035..110252057,-!p1@KLF4!1.02!153.79!KLF4;;chr12:124873852..124873881,-!p3@NCOR2!1.02!57.79!NCOR2;;chr20:48807648..48807671,+!p9@CEBPB!1.02!13.93!CEBPB;;chr1:38325227..38325246,-!p2@MTF1!1.02!12.99!MTF1;;chr2:208394817..208394834,+!p3@CREB1!1.01!38.02!CREB1;;chr12:96588368..96588394,+!p3@ELK3!1.01!25.04!ELK3;;chr8:71316428..71316459,-!p2@NCOA2!1.01!15.81!NCOA2;;chr4:185395633..185395651,-!p2@IRF2!1.01!14.87!IRF2;;chr18:3449695..3449712,+!p9@TGIF1!1.01!14.49!TGIF1;;chr2:231090471..231090504,+!p2@SP140!1.01!9.22!SP140;;chr9:88969303..88969335,-!p1@ZCCHC6!1.00!86.03!ZCCHC6;;chr17:38498594..38498661,+!p2@RARA!1.00!30.50!RARA;;chr9:137217986..137218049,+!p3@RXRA!1.00!25.98!RXRA;;chr11:615942..615957,-!p1@IRF7!0.99!84.90!IRF7;;chr9:88969287..88969297,-!p3@ZCCHC6!0.99!12.05!ZCCHC6;;chr9:110250697..110250738,-!p2@KLF4!0.99!10.35!KLF4;;chr2:70166156..70166179,+!p4@MXD1!0.99!8.85!MXD1;;chr2:70166258..70166288,+!p5@MXD1!0.99!8.85!MXD1;;chr19:12902289..12902307,+!p1@JUNB!0.98!1987.09!JUNB;;chr8:116681123..116681143,-!p4@TRPS1!0.98!16.94!TRPS1;;chr2:185463247..185463263,+!p1@ZNF804A!0.98!15.44!ZNF804A;;chr2:145275228..145275241,-!p11@ZEB2!0.98!10.54!ZEB2;;chr2:145271342..145271377,-!p5@ZEB2!0.98!8.66!ZEB2;;chr21:34442540..34442560,+!p2@OLIG1!0.98!8.66!OLIG1;;chr3:39195037..39195069,-!p2@CSRNP1!0.97!53.46!CSRNP1;;chr7:17338324..17338341,+!p3@AHR!0.97!28.80!AHR;;chr14:35872542..35872553,-!p10@NFKBIA!0.97!8.28!NFKBIA;;chr7:17338266..17338282,+!p1@AHR!0.96!91.11!AHR;;chr19:45504688..45504782,+!p1@RELB!0.96!50.83!RELB;;chr18:3448455..3448480,+!p5@TGIF1!0.96!15.25!TGIF1;;chr2:231090433..231090469,+!p1@SP140!0.96!8.09!SP140;;chr21:36260343..36260402,-!p6@RUNX1!0.95!12.99!RUNX1;;chr19:45261992..45262010,+!p9@BCL3!0.95!11.29!BCL3;;chr12:54785054..54785072,-!p4@ZNF385A!0.95!9.04!ZNF385A;;chr19:45254508..45254528,+!p12@BCL3!0.95!8.66!BCL3;;chr14:75745523..75745537,+!p1@FOS!0.94!949.87!FOS;;chr7:150974206..150974255,-!p1@SMARCD3!0.94!50.07!SMARCD3;;chr19:6110474..6110551,-!p1@RFX2!0.94!49.13!RFX2;;chr19:19496624..19496660,+!p3@GATAD2A!0.94!36.14!GATAD2A;;chrX:106960180..106960197,-!p2@TSC22D3!0.94!30.50!TSC22D3;;chr14:62203595..62203676,+!p4@HIF1A!0.94!14.87!HIF1A;;chr2:231280954..231280965,+!p2@SP100!0.94!14.68!SP100;;chr14:62162258..62162269,+!p2@HIF1A!0.93!75.86!HIF1A;;chr19:42636586..42636607,-!p1@POU2F2!0.93!21.65!POU2F2;;chr15:90544532..90544563,+!p1@ZNF710!0.93!15.25!ZNF71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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=FF:0000625,FF:0000634,FF:0011105,FF:11867-125B4
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor1.CNhs13472.11867-125B4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor1.CNhs13472.11867-125B4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor1.CNhs13472.11867-125B4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor1.CNhs13472.11867-125B4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor1.CNhs13472.11867-125B4.hg38.nobarcode.ctss.bed.gz
 |id=FF:11867-125B4
 |is_a=EFO:0002091;;FF:0011105
 |is_obsolete=
+|library_id=CNhs13472
+|library_id_phase_based=2:CNhs13472
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11867
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11867
 |name=CD14+ monocytes - treated with Cryptococcus, donor1
 |namespace=
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13472,LSID1024,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
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@@ Line 59: / Line 79: @@
 |rna_weight_ug=4.19795
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+|sample_category=primary cells
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 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=NFE2L2:3.05565922334;NFE2:2.92374304945;BACH2:2.76063540988;SPI1:2.7302077956;SREBF1,2:2.72290143794;CEBPA,B_DDIT3:2.71356017814;FOSL2:2.66910252537;SPIB:2.64666754326;EP300:2.56269659627;PAX2:2.53174746634;FOS_FOS{B,L1}_JUN{B,D}:2.50855572793;FOXP3:2.40863558322;NANOG{mouse}:2.30801396218;ETS1,2:2.18676015995;HLF:2.1732758532;NFE2L1:2.08000935595;ATF5_CREB3:1.97869973617;DMAP1_NCOR{1,2}_SMARC:1.96893427901;NFIL3:1.90414403473;NR1H4:1.86070886273;FOXN1:1.80729264399;ATF4:1.77864271789;RUNX1..3:1.76712680517;NFKB1_REL_RELA:1.70412806705;RXRA_VDR{dimer}:1.61274054066;FOXD3:1.57537995714;ELF1,2,4:1.52144325648;ATF6:1.51887729897;HMX1:1.3847005452;ESRRA:1.27230272643;IRF1,2:1.22990238642;PPARG:1.21301977377;MAFB:1.1516079885;HES1:1.13083988556;SMAD1..7,9:1.09701222705;CREB1:1.09344169022;JUN:1.01192570477;PDX1:0.999952151332;PITX1..3:0.999772515729;TFCP2:0.977243212317;GLI1..3:0.864300680472;NR6A1:0.841662093732;BPTF:0.788812813411;ESR1:0.778287907605;TGIF1:0.764816766595;HIF1A:0.733505977248;TLX2:0.728442784487;FOXO1,3,4:0.722125113801;CDX1,2,4:0.644081547484;ALX4:0.615370526605;SPZ1:0.595505822371;STAT2,4,6:0.586307341386;IRF7:0.552314768722;ZBTB16:0.488040575416;HMGA1,2:0.450531316998;ATF2:0.433364057585;PAX4:0.377510054695;FOX{F1,F2,J1}:0.352824147595;IKZF2:0.328203306135;PAX1,9:0.232739292859;ALX1:0.222855662653;NANOG:0.15155972878;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.14035877931;RFX2..5_RFXANK_RFXAP:0.136860023115;RREB1:0.136552242401;PRDM1:0.113998735482;FOX{D1,D2}:0.104486732295;XBP1:0.09963515171;HBP1_HMGB_SSRP1_UBTF:0.0882506057854;GATA4:0.0745941883237;EN1,2:0.0596442360634;FOXP1:0.0500697953098;PAX3,7:0.00330525678802;NFATC1..3:-0.0294524269776;HSF1,2:-0.0681488028041;MYB:-0.0802509472538;HOX{A5,B5}:-0.0848420759494;PAX8:-0.0996186676607;RXR{A,B,G}:-0.114587101411;TFAP4:-0.119606301513;FOXL1:-0.19029099805;NKX2-2,8:-0.198725861833;ZBTB6:-0.226027069954;ZIC1..3:-0.244795529832;NFIX:-0.279325124138;AHR_ARNT_ARNT2:-0.303786185168;SRF:-0.317570001184;TBP:-0.321632069357;NKX3-1:-0.409196402533;HNF4A_NR2F1,2:-0.432479185005;MZF1:-0.438701877648;NKX3-2:-0.448688845932;ZNF148:-0.453303182414;MYFfamily:-0.473785340338;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.474348461677;DBP:-0.479228284889;PATZ1:-0.494089446635;OCT4_SOX2{dimer}:-0.533086788093;TAL1_TCF{3,4,12}:-0.541611894787;STAT5{A,B}:-0.554327536987;EGR1..3:-0.576778075649;MEF2{A,B,C,D}:-0.635236298257;FOXM1:-0.646277252744;TOPORS:-0.647550815144;REST:-0.678412931108;HNF1A:-0.704624747319;AIRE:-0.725917908148;NKX6-1,2:-0.728978270944;T:-0.730040996543;UFEwm:-0.747128128775;TBX4,5:-0.749089539209;ZNF238:-0.756993941223;IKZF1:-0.775530481961;HOXA9_MEIS1:-0.779002424681;GCM1,2:-0.795351854282;POU5F1:-0.854176032421;EVI1:-0.891274721094;MED-1{core}:-0.906393969074;NHLH1,2:-0.952061290181;PRRX1,2:-0.95249028043;VSX1,2:-0.987333101336;TFAP2{A,C}:-0.999765610143;POU2F1..3:-1.00578683313;GZF1:-1.03659385002;KLF4:-1.07069364487;EBF1:-1.07408172245;FOXA2:-1.11889077399;SOX2:-1.1202073302;MTF1:-1.12224852771;ZFP161:-1.12295594319;GATA6:-1.13039831377;POU6F1:-1.13263846438;ZNF423:-1.13615033361;CUX2:-1.1446824169;MYOD1:-1.14754483395;MTE{core}:-1.17913989299;TEF:-1.21820806619;TLX1..3_NFIC{dimer}:-1.21966897837;SOX5:-1.22029826619;RFX1:-1.22151757912;GTF2A1,2:-1.24283578014;PAX6:-1.28613710641;SP1:-1.29793126724;GTF2I:-1.33778443634;TFAP2B:-1.33976379606;TP53:-1.3421385196;STAT1,3:-1.35498915138;RBPJ:-1.3609628613;NKX2-1,4:-1.37191153709;LMO2:-1.38494530645;TEAD1:-1.39709788421;MAZ:-1.41078430852;ZEB1:-1.41863075546;PAX5:-1.4310636884;ARID5B:-1.45227222573;ZNF384:-1.47100761452;SOX{8,9,10}:-1.50455646929;RORA:-1.52225389223;TFDP1:-1.53935818916;HIC1:-1.54609064802;ONECUT1,2:-1.54894613006;XCPE1{core}:-1.58594981351;E2F1..5:-1.59725678739;ELK1,4_GABP{A,B1}:-1.59908004565;SNAI1..3:-1.6059675099;BREu{core}:-1.62774945351;CRX:-1.65488232999;NKX2-3_NKX2-5:-1.66210185436;AR:-1.7027976308;HOX{A4,D4}:-1.71379455024;NR3C1:-1.72241267987;HAND1,2:-1.74091825246;ADNP_IRX_SIX_ZHX:-1.76927710371;NR5A1,2:-1.77738258832;MYBL2:-1.93111928713;HOX{A6,A7,B6,B7}:-1.93336574963;FOXQ1:-1.97847317459;YY1:-2.00377121914;POU1F1:-2.04665307311;FOX{I1,J2}:-2.08200939946;GFI1B:-2.42783276087;POU3F1..4:-2.43552202255;bHLH_family:-2.44740387168;NFY{A,B,C}:-2.46981492723;SOX17:-2.4872280973;LHX3,4:-2.54382363259;PBX1:-2.6250133259;NRF1:-2.68226632333;GFI1:-2.83715091918;CDC5L:-2.84598560704;ZNF143:-3.0233602643;LEF1_TCF7_TCF7L1,2:-3.07748302585
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11867-125B4;search_select_hide=table117:FF:11867-125B4
 }}

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FF:11867-125B4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:24, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0