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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00005251
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000040,CL:0000048,CL:0000049,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000557,CL:0000559,CL:0000566,CL:0000576,CL:0000723,CL:0000738,CL:0000763,CL:0000766,CL:0000837,CL:0000839,CL:0000860,CL:0000988,CL:0001012,CL:0002009,CL:0002031,CL:0002032,CL:0002057,CL:0002087,CL:0002194,CL:0002320,CL:0002371
|accession_numbers=CAGE;DRX008144;DRR009016;DRZ000441;DRZ001826;DRZ011791;DRZ013176
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000634,FF:0011105
|comment=
|comment=
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|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|
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|fonse_treatment_closure=FF:0000625,FF:0000634,FF:0011105,FF:11867-125B4
|fonse_treatment_closure=FF:0000625,FF:0000634,FF:0011105,FF:11867-125B4
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor1.CNhs13472.11867-125B4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor1.CNhs13472.11867-125B4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor1.CNhs13472.11867-125B4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor1.CNhs13472.11867-125B4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor1.CNhs13472.11867-125B4.hg38.nobarcode.ctss.bed.gz
|id=FF:11867-125B4
|id=FF:11867-125B4
|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0011105
|is_a=EFO:0002091;;FF:0011105
|is_obsolete=
|library_id=CNhs13472
|library_id_phase_based=2:CNhs13472
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11867
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11867
|name=CD14+ monocytes - treated with Cryptococcus, donor1
|name=CD14+ monocytes - treated with Cryptococcus, donor1
|namespace=
|namespace=
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|profile_cagescan=,,,
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|profile_hcage=CNhs13472,LSID1024,release012,COMPLETED
|profile_hcage=CNhs13472,LSID1024,release012,COMPLETED
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=125
|rna_box=125
|rna_catalog_number=
|rna_catalog_number=
Line 57: Line 79:
|rna_weight_ug=4.19795
|rna_weight_ug=4.19795
|sample_age=69
|sample_age=69
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_line=
Line 69: Line 92:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.35620307848797e-262!GO:0005737;cytoplasm;8.59179046685623e-130!GO:0043227;membrane-bound organelle;1.62981594284293e-123!GO:0043231;intracellular membrane-bound organelle;3.62670034388883e-123!GO:0043226;organelle;1.00179652560376e-114!GO:0043229;intracellular organelle;7.14433733136988e-114!GO:0044444;cytoplasmic part;1.33018355317257e-84!GO:0044422;organelle part;5.84386234552956e-72!GO:0005515;protein binding;2.03055724887678e-70!GO:0044446;intracellular organelle part;2.47602960638482e-70!GO:0044237;cellular metabolic process;6.90119917593132e-67!GO:0044238;primary metabolic process;5.39917365674445e-66!GO:0043170;macromolecule metabolic process;1.07926558960246e-64!GO:0032991;macromolecular complex;3.16283499833629e-58!GO:0003723;RNA binding;7.40864643358014e-53!GO:0005634;nucleus;1.17005246923755e-50!GO:0030529;ribonucleoprotein complex;4.50351323362777e-50!GO:0044428;nuclear part;1.45685368010743e-47!GO:0019538;protein metabolic process;2.01736261342098e-46!GO:0033036;macromolecule localization;5.31668152812643e-44!GO:0015031;protein transport;1.60505988246657e-43!GO:0045184;establishment of protein localization;1.98084188131753e-43!GO:0044267;cellular protein metabolic process;3.49276087787423e-43!GO:0044260;cellular macromolecule metabolic process;5.92783637855903e-43!GO:0008104;protein localization;4.5307794279131e-41!GO:0006412;translation;4.3243293913731e-39!GO:0043233;organelle lumen;1.46092227822969e-38!GO:0031974;membrane-enclosed lumen;1.46092227822969e-38!GO:0043283;biopolymer metabolic process;2.39178944913225e-36!GO:0005829;cytosol;4.66351520224409e-35!GO:0010467;gene expression;7.99169969825963e-35!GO:0031090;organelle membrane;3.72473356568051e-34!GO:0016071;mRNA metabolic process;4.42728727123587e-32!GO:0031981;nuclear lumen;2.82328564999084e-30!GO:0006396;RNA processing;5.01519022701926e-30!GO:0006915;apoptosis;9.21475616760116e-30!GO:0012501;programmed cell death;9.6881202420593e-30!GO:0009059;macromolecule biosynthetic process;1.12526368101524e-29!GO:0043234;protein complex;1.41550480056358e-29!GO:0046907;intracellular transport;3.24678233875037e-29!GO:0016043;cellular component organization and biogenesis;3.9039056548167e-29!GO:0006886;intracellular protein transport;4.56750027809032e-29!GO:0008380;RNA splicing;1.95024017178219e-28!GO:0008219;cell death;5.07649321868749e-28!GO:0016265;death;5.07649321868749e-28!GO:0006397;mRNA processing;1.46899376292853e-27!GO:0009058;biosynthetic process;1.58361321798218e-27!GO:0044249;cellular biosynthetic process;2.34218899531909e-27!GO:0005739;mitochondrion;4.93570622344211e-27!GO:0005840;ribosome;1.64982842348252e-26!GO:0031967;organelle envelope;1.95444028766986e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.00778453602539e-25!GO:0031975;envelope;3.67837502376635e-25!GO:0003735;structural constituent of ribosome;1.512676405022e-24!GO:0033279;ribosomal subunit;2.17053391961139e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.38346372464779e-23!GO:0051649;establishment of cellular localization;1.08742542458304e-22!GO:0005654;nucleoplasm;2.184692866103e-22!GO:0065003;macromolecular complex assembly;5.52965776649611e-22!GO:0051641;cellular localization;7.04381608219079e-22!GO:0044445;cytosolic part;1.37978584374092e-21!GO:0005681;spliceosome;9.78010896700675e-21!GO:0008134;transcription factor binding;1.81716281298581e-20!GO:0044429;mitochondrial part;4.06498382325341e-20!GO:0016192;vesicle-mediated transport;8.11723916077919e-20!GO:0000166;nucleotide binding;1.49584537346788e-19!GO:0042981;regulation of apoptosis;1.88402902695922e-19!GO:0043067;regulation of programmed cell death;3.844048106505e-19!GO:0044451;nucleoplasm part;7.17744029845969e-19!GO:0022607;cellular component assembly;9.64183906469929e-19!GO:0043412;biopolymer modification;2.60897136641427e-17!GO:0007243;protein kinase cascade;3.94803284735521e-17!GO:0044265;cellular macromolecule catabolic process;6.8742551746905e-17!GO:0006119;oxidative phosphorylation;9.14145700996313e-17!GO:0006512;ubiquitin cycle;1.15356814533155e-16!GO:0048770;pigment granule;1.2047277836361e-16!GO:0042470;melanosome;1.2047277836361e-16!GO:0005740;mitochondrial envelope;1.52992574377586e-16!GO:0005773;vacuole;2.35482622028234e-16!GO:0006464;protein modification process;3.33161070807433e-16!GO:0031966;mitochondrial membrane;4.87617777250875e-16!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.50394153103071e-16!GO:0016070;RNA metabolic process;7.33533581976181e-16!GO:0048523;negative regulation of cellular process;1.68055106849711e-15!GO:0003676;nucleic acid binding;2.07207411991765e-15!GO:0043687;post-translational protein modification;2.19724292867061e-15!GO:0019866;organelle inner membrane;3.97453754603227e-15!GO:0050794;regulation of cellular process;5.49930690986889e-15!GO:0007242;intracellular signaling cascade;6.49082684033858e-15!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.40298708282687e-15!GO:0006996;organelle organization and biogenesis;7.40298708282687e-15!GO:0022618;protein-RNA complex assembly;7.98453333947777e-15!GO:0000323;lytic vacuole;1.10827152742769e-14!GO:0005764;lysosome;1.10827152742769e-14!GO:0006605;protein targeting;1.19111930246649e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.46677593251252e-14!GO:0016462;pyrophosphatase activity;1.68317725649866e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;1.90165192636673e-14!GO:0016604;nuclear body;1.90165192636673e-14!GO:0017111;nucleoside-triphosphatase activity;2.44919124577067e-14!GO:0048519;negative regulation of biological process;4.4425217038809e-14!GO:0032553;ribonucleotide binding;5.79992900979283e-14!GO:0032555;purine ribonucleotide binding;5.79992900979283e-14!GO:0043285;biopolymer catabolic process;7.40201239880782e-14!GO:0019941;modification-dependent protein catabolic process;9.12005767433514e-14!GO:0043632;modification-dependent macromolecule catabolic process;9.12005767433514e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.1595483763223e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.19870315868429e-13!GO:0044257;cellular protein catabolic process;1.37964351974623e-13!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.2638543506963e-13!GO:0009057;macromolecule catabolic process;2.55052952684204e-13!GO:0017076;purine nucleotide binding;2.84857703942916e-13!GO:0003712;transcription cofactor activity;4.18192969404877e-13!GO:0043069;negative regulation of programmed cell death;4.45464380653729e-13!GO:0005794;Golgi apparatus;4.74150253025581e-13!GO:0043066;negative regulation of apoptosis;5.3141114563198e-13!GO:0006913;nucleocytoplasmic transport;5.68337096502045e-13!GO:0015934;large ribosomal subunit;8.39510792387972e-13!GO:0044248;cellular catabolic process;9.04576790424839e-13!GO:0006793;phosphorus metabolic process;9.04576790424839e-13!GO:0006796;phosphate metabolic process;9.04576790424839e-13!GO:0065009;regulation of a molecular function;1.02815306054124e-12!GO:0051169;nuclear transport;1.08173658297135e-12!GO:0016874;ligase activity;1.15582414157986e-12!GO:0005743;mitochondrial inner membrane;1.17474009942077e-12!GO:0016607;nuclear speck;1.240521395384e-12!GO:0012505;endomembrane system;1.93952286240297e-12!GO:0005768;endosome;2.06927755750392e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.1114026752439e-12!GO:0008135;translation factor activity, nucleic acid binding;2.46058638616962e-12!GO:0000502;proteasome complex (sensu Eukaryota);3.74142875867471e-12!GO:0044455;mitochondrial membrane part;5.35039128199011e-12!GO:0051246;regulation of protein metabolic process;5.96155611515337e-12!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;7.09830527506939e-12!GO:0050789;regulation of biological process;7.49230401818406e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.40757189374017e-12!GO:0006366;transcription from RNA polymerase II promoter;1.55813868917967e-11!GO:0015935;small ribosomal subunit;1.68530984415434e-11!GO:0016310;phosphorylation;2.1500591153293e-11!GO:0006457;protein folding;2.52480999846355e-11!GO:0003743;translation initiation factor activity;4.21359458243997e-11!GO:0002376;immune system process;4.27474897624241e-11!GO:0006259;DNA metabolic process;6.3485537606572e-11!GO:0030163;protein catabolic process;8.76321266679537e-11!GO:0006916;anti-apoptosis;9.94930615975388e-11!GO:0065007;biological regulation;2.04474166376544e-10!GO:0006950;response to stress;2.09959010440257e-10!GO:0006413;translational initiation;3.14195996106697e-10!GO:0005524;ATP binding;7.08348793447269e-10!GO:0051186;cofactor metabolic process;7.38719488125999e-10!GO:0006446;regulation of translational initiation;7.62710189483399e-10!GO:0031324;negative regulation of cellular metabolic process;8.10425672867609e-10!GO:0048193;Golgi vesicle transport;8.53228252336508e-10!GO:0032559;adenyl ribonucleotide binding;1.28510249257021e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.47926035022353e-09!GO:0005746;mitochondrial respiratory chain;1.5033602285131e-09!GO:0008639;small protein conjugating enzyme activity;2.66052832317604e-09!GO:0005783;endoplasmic reticulum;3.30002388627244e-09!GO:0019787;small conjugating protein ligase activity;3.51097417687954e-09!GO:0050790;regulation of catalytic activity;3.89476240212107e-09!GO:0005635;nuclear envelope;4.25439509474611e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;4.927001657069e-09!GO:0000375;RNA splicing, via transesterification reactions;4.927001657069e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.927001657069e-09!GO:0048522;positive regulation of cellular process;5.22833863022857e-09!GO:0004842;ubiquitin-protein ligase activity;5.53187056948718e-09!GO:0030554;adenyl nucleotide binding;6.21196401891028e-09!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.39220532000836e-09!GO:0019829;cation-transporting ATPase activity;7.02603135385709e-09!GO:0051082;unfolded protein binding;7.16556730261684e-09!GO:0050136;NADH dehydrogenase (quinone) activity;7.73188856080965e-09!GO:0003954;NADH dehydrogenase activity;7.73188856080965e-09!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.73188856080965e-09!GO:0006732;coenzyme metabolic process;7.73188856080965e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.03366005697755e-09!GO:0016787;hydrolase activity;1.04270402887623e-08!GO:0019222;regulation of metabolic process;1.12902888892708e-08!GO:0017038;protein import;1.1865413718012e-08!GO:0015986;ATP synthesis coupled proton transport;1.28405932899864e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.28405932899864e-08!GO:0006955;immune response;1.45669541263722e-08!GO:0005770;late endosome;1.71429265817773e-08!GO:0003713;transcription coactivator activity;1.87423771174875e-08!GO:0006417;regulation of translation;1.87423771174875e-08!GO:0009892;negative regulation of metabolic process;2.18366403516764e-08!GO:0009056;catabolic process;3.07436712959833e-08!GO:0007264;small GTPase mediated signal transduction;3.3632252769293e-08!GO:0048518;positive regulation of biological process;3.38862471332848e-08!GO:0009967;positive regulation of signal transduction;3.67116012240573e-08!GO:0051170;nuclear import;4.04634767583514e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.45523610252552e-08!GO:0008047;enzyme activator activity;4.45523610252552e-08!GO:0016564;transcription repressor activity;4.46805863870641e-08!GO:0016481;negative regulation of transcription;4.60156295566389e-08!GO:0005730;nucleolus;5.67461247571156e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.60143790412511e-08!GO:0016881;acid-amino acid ligase activity;7.29222142192267e-08!GO:0043065;positive regulation of apoptosis;7.30117409703027e-08!GO:0019899;enzyme binding;7.68846782512846e-08!GO:0008565;protein transporter activity;7.94165461265419e-08!GO:0005774;vacuolar membrane;7.94165461265419e-08!GO:0009150;purine ribonucleotide metabolic process;8.54456576660367e-08!GO:0006606;protein import into nucleus;9.21810406371831e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.98944397142419e-08!GO:0043068;positive regulation of programmed cell death;9.98944397142419e-08!GO:0042775;organelle ATP synthesis coupled electron transport;9.99112117645922e-08!GO:0042773;ATP synthesis coupled electron transport;9.99112117645922e-08!GO:0044440;endosomal part;1.03791009545014e-07!GO:0010008;endosome membrane;1.03791009545014e-07!GO:0007049;cell cycle;1.10086013305544e-07!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.35361978739971e-07!GO:0006164;purine nucleotide biosynthetic process;1.40765827413311e-07!GO:0031965;nuclear membrane;1.47252708973118e-07!GO:0006163;purine nucleotide metabolic process;1.5883240906425e-07!GO:0003924;GTPase activity;1.6339821902361e-07!GO:0044432;endoplasmic reticulum part;1.63681417811148e-07!GO:0006754;ATP biosynthetic process;1.63681417811148e-07!GO:0006753;nucleoside phosphate metabolic process;1.63681417811148e-07!GO:0016568;chromatin modification;1.65176413144304e-07!GO:0030964;NADH dehydrogenase complex (quinone);1.77775124523992e-07!GO:0045271;respiratory chain complex I;1.77775124523992e-07!GO:0005747;mitochondrial respiratory chain complex I;1.77775124523992e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.92225315081034e-07!GO:0009259;ribonucleotide metabolic process;2.1659741033505e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.17685863736377e-07!GO:0006461;protein complex assembly;2.29400329668859e-07!GO:0005525;GTP binding;2.30701953400545e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.49114650822857e-07!GO:0044453;nuclear membrane part;2.56840448566915e-07!GO:0043228;non-membrane-bound organelle;2.87231391617785e-07!GO:0043232;intracellular non-membrane-bound organelle;2.87231391617785e-07!GO:0016887;ATPase activity;3.38460877971071e-07!GO:0005793;ER-Golgi intermediate compartment;3.41441963006745e-07!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.68901421649288e-07!GO:0009260;ribonucleotide biosynthetic process;3.95919270984353e-07!GO:0042623;ATPase activity, coupled;4.26424207656704e-07!GO:0044437;vacuolar part;4.26424207656704e-07!GO:0009889;regulation of biosynthetic process;4.28443954212597e-07!GO:0005765;lysosomal membrane;5.53723336905144e-07!GO:0051726;regulation of cell cycle;5.58111803498202e-07!GO:0031326;regulation of cellular biosynthetic process;5.74868902587537e-07!GO:0006323;DNA packaging;5.88223367483855e-07!GO:0016044;membrane organization and biogenesis;5.91397339927288e-07!GO:0016563;transcription activator activity;6.66508169840106e-07!GO:0009966;regulation of signal transduction;6.90256525420763e-07!GO:0048468;cell development;7.05107980078799e-07!GO:0009055;electron carrier activity;7.17571654067092e-07!GO:0045786;negative regulation of progression through cell cycle;7.50137281865338e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.54196185510221e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.54196185510221e-07!GO:0000074;regulation of progression through cell cycle;8.79644394303426e-07!GO:0009615;response to virus;9.4635962885916e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.05474749168415e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.05474749168415e-06!GO:0046034;ATP metabolic process;1.10345566429019e-06!GO:0006917;induction of apoptosis;1.31520239533928e-06!GO:0051188;cofactor biosynthetic process;1.72257130875482e-06!GO:0031323;regulation of cellular metabolic process;1.72899691621572e-06!GO:0012502;induction of programmed cell death;2.15189915006153e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.47302337079862e-06!GO:0009144;purine nucleoside triphosphate metabolic process;2.47302337079862e-06!GO:0032446;protein modification by small protein conjugation;2.55263018671889e-06!GO:0006752;group transfer coenzyme metabolic process;2.86856777263346e-06!GO:0050657;nucleic acid transport;2.94924050435253e-06!GO:0051236;establishment of RNA localization;2.94924050435253e-06!GO:0050658;RNA transport;2.94924050435253e-06!GO:0009199;ribonucleoside triphosphate metabolic process;3.18204365221371e-06!GO:0031982;vesicle;3.34834233988816e-06!GO:0009108;coenzyme biosynthetic process;3.39077420517611e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.90502916060846e-06!GO:0006403;RNA localization;4.10472489579312e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.39305804252017e-06!GO:0005839;proteasome core complex (sensu Eukaryota);4.5202229326858e-06!GO:0005789;endoplasmic reticulum membrane;4.65042061078292e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.65086899236579e-06!GO:0032561;guanyl ribonucleotide binding;4.76277174256454e-06!GO:0019001;guanyl nucleotide binding;4.76277174256454e-06!GO:0016567;protein ubiquitination;4.76277174256454e-06!GO:0048475;coated membrane;5.15209985788274e-06!GO:0030117;membrane coat;5.15209985788274e-06!GO:0009607;response to biotic stimulus;5.69468527030845e-06!GO:0006888;ER to Golgi vesicle-mediated transport;6.54684479766924e-06!GO:0003714;transcription corepressor activity;7.60467070254792e-06!GO:0016197;endosome transport;7.67156259819259e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;8.08079161372808e-06!GO:0005096;GTPase activator activity;8.12259419362398e-06!GO:0009141;nucleoside triphosphate metabolic process;8.57460525110486e-06!GO:0030695;GTPase regulator activity;8.80845669475967e-06!GO:0005643;nuclear pore;9.10719193553274e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.13927542318766e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;9.94408048174045e-06!GO:0051336;regulation of hydrolase activity;1.02240118754648e-05!GO:0030120;vesicle coat;1.21563834031818e-05!GO:0030662;coated vesicle membrane;1.21563834031818e-05!GO:0031252;leading edge;1.37024753210933e-05!GO:0006897;endocytosis;1.43393270808689e-05!GO:0010324;membrane invagination;1.43393270808689e-05!GO:0031980;mitochondrial lumen;1.67319179343972e-05!GO:0005759;mitochondrial matrix;1.67319179343972e-05!GO:0051276;chromosome organization and biogenesis;1.78018386004673e-05!GO:0005769;early endosome;1.94648618780043e-05!GO:0031410;cytoplasmic vesicle;2.28868195860659e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;2.42521408865772e-05!GO:0015399;primary active transmembrane transporter activity;2.42521408865772e-05!GO:0004298;threonine endopeptidase activity;2.46013693021139e-05!GO:0010468;regulation of gene expression;2.822347242858e-05!GO:0031902;late endosome membrane;2.95118408544306e-05!GO:0006974;response to DNA damage stimulus;3.44727587443953e-05!GO:0031988;membrane-bound vesicle;3.70460667474104e-05!GO:0051028;mRNA transport;3.90553571757656e-05!GO:0008632;apoptotic program;4.45360831057949e-05!GO:0008026;ATP-dependent helicase activity;4.492745571991e-05!GO:0006401;RNA catabolic process;5.34062565299726e-05!GO:0004674;protein serine/threonine kinase activity;6.29037904387226e-05!GO:0030036;actin cytoskeleton organization and biogenesis;6.46065169223142e-05!GO:0004386;helicase activity;6.66600867814064e-05!GO:0045259;proton-transporting ATP synthase complex;7.09176961972185e-05!GO:0001816;cytokine production;7.18918058737256e-05!GO:0051168;nuclear export;7.20661104537992e-05!GO:0006613;cotranslational protein targeting to membrane;7.22796438284034e-05!GO:0009060;aerobic respiration;9.29733308903778e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;9.29733308903778e-05!GO:0022402;cell cycle process;9.41992236695573e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.7593704575715e-05!GO:0045892;negative regulation of transcription, DNA-dependent;0.000100861418349998!GO:0046822;regulation of nucleocytoplasmic transport;0.000105609639189277!GO:0046930;pore complex;0.00010694256557635!GO:0032940;secretion by cell;0.000110252149216376!GO:0065002;intracellular protein transport across a membrane;0.000117953629045843!GO:0005083;small GTPase regulator activity;0.000120937787085649!GO:0016023;cytoplasmic membrane-bound vesicle;0.000124289318996814!GO:0007265;Ras protein signal transduction;0.000126064122777769!GO:0016740;transferase activity;0.000134958131907186!GO:0043566;structure-specific DNA binding;0.000149473424768699!GO:0005057;receptor signaling protein activity;0.0001601613104076!GO:0044431;Golgi apparatus part;0.000170727567699018!GO:0009893;positive regulation of metabolic process;0.000179869108707291!GO:0005798;Golgi-associated vesicle;0.000183773319131946!GO:0000151;ubiquitin ligase complex;0.000190303357768007!GO:0051427;hormone receptor binding;0.000192781751927554!GO:0003724;RNA helicase activity;0.000193861479262474!GO:0005885;Arp2/3 protein complex;0.000228801835011264!GO:0008234;cysteine-type peptidase activity;0.000236443321655963!GO:0051338;regulation of transferase activity;0.00024210326942613!GO:0000245;spliceosome assembly;0.000265068141481095!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000265092624939466!GO:0006350;transcription;0.000269710737521578!GO:0007050;cell cycle arrest;0.000289887718328286!GO:0006818;hydrogen transport;0.000290028492277361!GO:0035257;nuclear hormone receptor binding;0.000314143918261387!GO:0046519;sphingoid metabolic process;0.000337874255152908!GO:0043492;ATPase activity, coupled to movement of substances;0.000338795155281929!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000341163312189717!GO:0045333;cellular respiration;0.000358234102703653!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.000368383026703002!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000372739480903412!GO:0030532;small nuclear ribonucleoprotein complex;0.000384027755896423!GO:0030099;myeloid cell differentiation;0.000392830445217234!GO:0015992;proton transport;0.000409825896545329!GO:0007040;lysosome organization and biogenesis;0.000409825896545329!GO:0006281;DNA repair;0.000425567753325247!GO:0008654;phospholipid biosynthetic process;0.000432362519169052!GO:0003729;mRNA binding;0.000443425959730279!GO:0006402;mRNA catabolic process;0.000466593086362383!GO:0006672;ceramide metabolic process;0.000490843312285764!GO:0007005;mitochondrion organization and biogenesis;0.000500553133936997!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000512660277080894!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000516841769497647!GO:0043085;positive regulation of catalytic activity;0.000530532332280072!GO:0022890;inorganic cation transmembrane transporter activity;0.00053410002672727!GO:0003697;single-stranded DNA binding;0.000534777219301394!GO:0007034;vacuolar transport;0.000534777219301394!GO:0043549;regulation of kinase activity;0.000553337544825142!GO:0006643;membrane lipid metabolic process;0.000568955084379556!GO:0001726;ruffle;0.00057489340192326!GO:0051223;regulation of protein transport;0.000596851327405833!GO:0060090;molecular adaptor activity;0.000619858522973112!GO:0051789;response to protein stimulus;0.000670130593056444!GO:0006986;response to unfolded protein;0.000670130593056444!GO:0030029;actin filament-based process;0.000708229615726925!GO:0016301;kinase activity;0.000708229615726925!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000728365814282703!GO:0045941;positive regulation of transcription;0.00076682703833088!GO:0005741;mitochondrial outer membrane;0.000773043033738474!GO:0005667;transcription factor complex;0.000775950340495889!GO:0002757;immune response-activating signal transduction;0.000776169435954176!GO:0009117;nucleotide metabolic process;0.000796789666658556!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000810536426411206!GO:0044262;cellular carbohydrate metabolic process;0.000851754699299812!GO:0046983;protein dimerization activity;0.00086528956888839!GO:0006612;protein targeting to membrane;0.000880551919907149!GO:0045859;regulation of protein kinase activity;0.000897970641408872!GO:0007033;vacuole organization and biogenesis;0.000897970641408872!GO:0043087;regulation of GTPase activity;0.000922715798380839!GO:0033157;regulation of intracellular protein transport;0.00094078712190189!GO:0042306;regulation of protein import into nucleus;0.00094078712190189!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000961310173903089!GO:0045893;positive regulation of transcription, DNA-dependent;0.000971675184583544!GO:0051090;regulation of transcription factor activity;0.00100999161682381!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00107335851033766!GO:0005099;Ras GTPase activator activity;0.00107492227628797!GO:0065004;protein-DNA complex assembly;0.00107738225819431!GO:0042254;ribosome biogenesis and assembly;0.00114254497693888!GO:0030149;sphingolipid catabolic process;0.0011668730259313!GO:0005761;mitochondrial ribosome;0.00118877844550723!GO:0000313;organellar ribosome;0.00118877844550723!GO:0006954;inflammatory response;0.00121484736584169!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00121484736584169!GO:0043281;regulation of caspase activity;0.00122277705330888!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00126861039048856!GO:0033116;ER-Golgi intermediate compartment membrane;0.00131236464056352!GO:0005637;nuclear inner membrane;0.00135239702974592!GO:0007041;lysosomal transport;0.00149878418607918!GO:0043623;cellular protein complex assembly;0.00149907054752171!GO:0006919;caspase activation;0.00153220463082118!GO:0031325;positive regulation of cellular metabolic process;0.00161292320043492!GO:0045637;regulation of myeloid cell differentiation;0.00164864034951255!GO:0043280;positive regulation of caspase activity;0.00179125860589365!GO:0002764;immune response-regulating signal transduction;0.00184027044177012!GO:0008186;RNA-dependent ATPase activity;0.00193486803046624!GO:0019904;protein domain specific binding;0.00201113020143474!GO:0002274;myeloid leukocyte activation;0.00207099518201872!GO:0022415;viral reproductive process;0.00211671893335056!GO:0009719;response to endogenous stimulus;0.00220552560736993!GO:0006468;protein amino acid phosphorylation;0.00225935832733552!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.00229897444200976!GO:0019867;outer membrane;0.00236600192291939!GO:0030041;actin filament polymerization;0.00242891013401872!GO:0006333;chromatin assembly or disassembly;0.00257593016715235!GO:0019221;cytokine and chemokine mediated signaling pathway;0.0025894222075826!GO:0016251;general RNA polymerase II transcription factor activity;0.0025894222075826!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00262757581243554!GO:0042990;regulation of transcription factor import into nucleus;0.00264351968150201!GO:0042991;transcription factor import into nucleus;0.00264351968150201!GO:0031968;organelle outer membrane;0.00287030146724638!GO:0048487;beta-tubulin binding;0.00291818812460147!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00294000962542962!GO:0004812;aminoacyl-tRNA ligase activity;0.00294000962542962!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00294000962542962!GO:0006099;tricarboxylic acid cycle;0.00309917557475639!GO:0046356;acetyl-CoA catabolic process;0.00309917557475639!GO:0051707;response to other organism;0.00309917557475639!GO:0016363;nuclear matrix;0.00316271347522586!GO:0045045;secretory pathway;0.00351940171763344!GO:0031901;early endosome membrane;0.00359893534900474!GO:0045321;leukocyte activation;0.00382172628367848!GO:0046966;thyroid hormone receptor binding;0.0039244299704428!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.00397813562150062!GO:0045454;cell redox homeostasis;0.00412409179310161!GO:0051187;cofactor catabolic process;0.00415339701341073!GO:0000139;Golgi membrane;0.00430637523386835!GO:0001817;regulation of cytokine production;0.00433643342080158!GO:0030097;hemopoiesis;0.00433643342080158!GO:0006891;intra-Golgi vesicle-mediated transport;0.00468616703369189!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00477170995158586!GO:0043021;ribonucleoprotein binding;0.00479910765346389!GO:0031072;heat shock protein binding;0.00479910765346389!GO:0018193;peptidyl-amino acid modification;0.00481430638097091!GO:0043038;amino acid activation;0.00484322736582817!GO:0006418;tRNA aminoacylation for protein translation;0.00484322736582817!GO:0043039;tRNA aminoacylation;0.00484322736582817!GO:0006352;transcription initiation;0.00485688211700096!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00489939315192617!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00489939315192617!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00489939315192617!GO:0004004;ATP-dependent RNA helicase activity;0.0050906944421524!GO:0006399;tRNA metabolic process;0.00510873249771556!GO:0005070;SH3/SH2 adaptor activity;0.00525238930727893!GO:0032318;regulation of Ras GTPase activity;0.00525238930727893!GO:0004197;cysteine-type endopeptidase activity;0.00529278203409704!GO:0045449;regulation of transcription;0.00554566335327268!GO:0004185;serine carboxypeptidase activity;0.0056094245937488!GO:0005813;centrosome;0.00565232514880702!GO:0030658;transport vesicle membrane;0.00577870695254859!GO:0006084;acetyl-CoA metabolic process;0.00579467834058781!GO:0019377;glycolipid catabolic process;0.00615389760104372!GO:0051252;regulation of RNA metabolic process;0.00622280686501211!GO:0005484;SNAP receptor activity;0.00645545024848586!GO:0033367;protein localization in mast cell secretory granule;0.00645545024848586!GO:0033365;protein localization in organelle;0.00645545024848586!GO:0033371;T cell secretory granule organization and biogenesis;0.00645545024848586!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.00645545024848586!GO:0033375;protease localization in T cell secretory granule;0.00645545024848586!GO:0042629;mast cell granule;0.00645545024848586!GO:0033377;maintenance of protein localization in T cell secretory granule;0.00645545024848586!GO:0033364;mast cell secretory granule organization and biogenesis;0.00645545024848586!GO:0033380;granzyme B localization in T cell secretory granule;0.00645545024848586!GO:0033379;maintenance of protease localization in T cell secretory granule;0.00645545024848586!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.00645545024848586!GO:0033368;protease localization in mast cell secretory granule;0.00645545024848586!GO:0033366;protein localization in secretory granule;0.00645545024848586!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.00645545024848586!GO:0033374;protein localization in T cell secretory granule;0.00645545024848586!GO:0051345;positive regulation of hydrolase activity;0.0066101331179384!GO:0007259;JAK-STAT cascade;0.00691089674814093!GO:0006611;protein export from nucleus;0.00752198777955941!GO:0043433;negative regulation of transcription factor activity;0.00781331271620143!GO:0030867;rough endoplasmic reticulum membrane;0.00786297549230085!GO:0008383;manganese superoxide dismutase activity;0.007912930779394!GO:0001315;age-dependent response to reactive oxygen species;0.007912930779394!GO:0006351;transcription, DNA-dependent;0.00808702685680967!GO:0009165;nucleotide biosynthetic process;0.00808702685680967!GO:0006952;defense response;0.00821877677996953!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.00840284164223025!GO:0042802;identical protein binding;0.00844581916436961!GO:0032774;RNA biosynthetic process;0.00862705594717097!GO:0000785;chromatin;0.00880411022847664!GO:0006665;sphingolipid metabolic process;0.00906037374926164!GO:0032386;regulation of intracellular transport;0.00937631806858522!GO:0006458;'de novo' protein folding;0.00938253128605286!GO:0051084;'de novo' posttranslational protein folding;0.00938253128605286!GO:0019318;hexose metabolic process;0.00962028766012481!GO:0030118;clathrin coat;0.00977465935543093!GO:0008624;induction of apoptosis by extracellular signals;0.0098367862513916!GO:0015631;tubulin binding;0.00988282825952335!GO:0031625;ubiquitin protein ligase binding;0.00992183610835758!GO:0003690;double-stranded DNA binding;0.010038221879352!GO:0048471;perinuclear region of cytoplasm;0.0104476643579168!GO:0009109;coenzyme catabolic process;0.0105884037707906!GO:0030134;ER to Golgi transport vesicle;0.0114564842608473!GO:0006607;NLS-bearing substrate import into nucleus;0.0114835944369096!GO:0030127;COPII vesicle coat;0.0115278899877531!GO:0012507;ER to Golgi transport vesicle membrane;0.0115278899877531!GO:0046467;membrane lipid biosynthetic process;0.0116805463317213!GO:0048500;signal recognition particle;0.0118107826998381!GO:0030518;steroid hormone receptor signaling pathway;0.0121451401977561!GO:0005996;monosaccharide metabolic process;0.0121587762798491!GO:0051092;activation of NF-kappaB transcription factor;0.0121587762798491!GO:0046479;glycosphingolipid catabolic process;0.0121587762798491!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.012188439237858!GO:0006091;generation of precursor metabolites and energy;0.0123023831108063!GO:0000082;G1/S transition of mitotic cell cycle;0.0123023831108063!GO:0019079;viral genome replication;0.0123801268918397!GO:0016779;nucleotidyltransferase activity;0.0124135401739962!GO:0030218;erythrocyte differentiation;0.0126286336917384!GO:0046466;membrane lipid catabolic process;0.0132081020920939!GO:0006354;RNA elongation;0.0132554774693385!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0134141492730479!GO:0016791;phosphoric monoester hydrolase activity;0.0135243309907197!GO:0019882;antigen processing and presentation;0.0135243309907197!GO:0030027;lamellipodium;0.0135491950262501!GO:0006650;glycerophospholipid metabolic process;0.0137847051008818!GO:0030660;Golgi-associated vesicle membrane;0.0141529569786057!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0145902675705466!GO:0001819;positive regulation of cytokine production;0.014721094016247!GO:0002822;regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains.;0.0152256099795036!GO:0002819;regulation of adaptive immune response;0.0152256099795036!GO:0043621;protein self-association;0.0156353380862834!GO:0005048;signal sequence binding;0.0157641416819097!GO:0005905;coated pit;0.0158955868890592!GO:0050811;GABA receptor binding;0.0159404808038086!GO:0043488;regulation of mRNA stability;0.0160613575189692!GO:0043487;regulation of RNA stability;0.0160613575189692!GO:0030176;integral to endoplasmic reticulum membrane;0.0164180156125642!GO:0016072;rRNA metabolic process;0.0164429795752381!GO:0050851;antigen receptor-mediated signaling pathway;0.0167238832936849!GO:0030663;COPI coated vesicle membrane;0.0172386143890497!GO:0030126;COPI vesicle coat;0.0172386143890497!GO:0005815;microtubule organizing center;0.0173447897667601!GO:0032763;regulation of mast cell cytokine production;0.01749213181786!GO:0032762;mast cell cytokine production;0.01749213181786!GO:0004177;aminopeptidase activity;0.0176729105518739!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0180887656438787!GO:0045047;protein targeting to ER;0.0180887656438787!GO:0002440;production of molecular mediator of immune response;0.0181648824592206!GO:0006914;autophagy;0.0183816197656386!GO:0005694;chromosome;0.0184839942050527!GO:0006644;phospholipid metabolic process;0.018590066988331!GO:0008154;actin polymerization and/or depolymerization;0.0188247082444104!GO:0033673;negative regulation of kinase activity;0.0189349188718319!GO:0006469;negative regulation of protein kinase activity;0.0189349188718319!GO:0019883;antigen processing and presentation of endogenous antigen;0.0189349188718319!GO:0008637;apoptotic mitochondrial changes;0.0190336659925715!GO:0000209;protein polyubiquitination;0.0190336659925715!GO:0030521;androgen receptor signaling pathway;0.0193787676630485!GO:0043022;ribosome binding;0.0196549490971561!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0196647992333265!GO:0006364;rRNA processing;0.0198542376247064!GO:0030503;regulation of cell redox homeostasis;0.0200090818712486!GO:0030137;COPI-coated vesicle;0.0200783835856031!GO:0000287;magnesium ion binding;0.0200783835856031!GO:0008139;nuclear localization sequence binding;0.0202608349109869!GO:0006516;glycoprotein catabolic process;0.0203963578342659!GO:0042613;MHC class II protein complex;0.0205441459803608!GO:0002224;toll-like receptor signaling pathway;0.021234369570524!GO:0002221;pattern recognition receptor signaling pathway;0.021234369570524!GO:0004860;protein kinase inhibitor activity;0.0213771793140001!GO:0030133;transport vesicle;0.0215641108394861!GO:0009611;response to wounding;0.0216446674710258!GO:0002467;germinal center formation;0.0216446674710258!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0217868287107478!GO:0035035;histone acetyltransferase binding;0.0217902011275619!GO:0003702;RNA polymerase II transcription factor activity;0.0226042596486809!GO:0048002;antigen processing and presentation of peptide antigen;0.0226335804647404!GO:0002444;myeloid leukocyte mediated immunity;0.0236266275474493!GO:0051348;negative regulation of transferase activity;0.0237161519648598!GO:0051098;regulation of binding;0.0238576110301867!GO:0017166;vinculin binding;0.0241858275161033!GO:0045792;negative regulation of cell size;0.0246108387559905!GO:0050900;leukocyte migration;0.024886280056985!GO:0008625;induction of apoptosis via death domain receptors;0.0249627935202626!GO:0003746;translation elongation factor activity;0.0250690684932063!GO:0006414;translational elongation;0.0252171009719784!GO:0019843;rRNA binding;0.0252696842654472!GO:0051059;NF-kappaB binding;0.0252828179699126!GO:0043300;regulation of leukocyte degranulation;0.02577879434953!GO:0046578;regulation of Ras protein signal transduction;0.0260146017203829!GO:0051085;chaperone cofactor-dependent protein folding;0.0265256288095131!GO:0030100;regulation of endocytosis;0.0265737142331137!GO:0033033;negative regulation of myeloid cell apoptosis;0.0265737142331137!GO:0001803;regulation of type III hypersensitivity;0.0265737142331137!GO:0032733;positive regulation of interleukin-10 production;0.0265737142331137!GO:0033025;regulation of mast cell apoptosis;0.0265737142331137!GO:0001805;positive regulation of type III hypersensitivity;0.0265737142331137!GO:0033023;mast cell homeostasis;0.0265737142331137!GO:0002431;Fc receptor mediated stimulatory signaling pathway;0.0265737142331137!GO:0033032;regulation of myeloid cell apoptosis;0.0265737142331137!GO:0001802;type III hypersensitivity;0.0265737142331137!GO:0033028;myeloid cell apoptosis;0.0265737142331137!GO:0042590;antigen processing and presentation of exogenous peptide antigen via MHC class I;0.0265737142331137!GO:0033026;negative regulation of mast cell apoptosis;0.0265737142331137!GO:0033024;mast cell apoptosis;0.0265737142331137!GO:0030384;phosphoinositide metabolic process;0.0266377144110971!GO:0045646;regulation of erythrocyte differentiation;0.0267313733869953!GO:0051091;positive regulation of transcription factor activity;0.0267313733869953!GO:0019220;regulation of phosphate metabolic process;0.0268059302983078!GO:0051174;regulation of phosphorus metabolic process;0.0268059302983078!GO:0051056;regulation of small GTPase mediated signal transduction;0.0269817360410756!GO:0000339;RNA cap binding;0.0271457618449631!GO:0006405;RNA export from nucleus;0.0274386120605475!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0276718815795975!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0276718815795975!GO:0015923;mannosidase activity;0.0279982889684838!GO:0051049;regulation of transport;0.0288630964201875!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0289027485513178!GO:0000165;MAPKKK cascade;0.0289934835145556!GO:0005869;dynactin complex;0.0290134117067456!GO:0045576;mast cell activation;0.0294723299231446!GO:0051101;regulation of DNA binding;0.0296583236339871!GO:0002718;regulation of cytokine production during immune response;0.0297347824709091!GO:0002367;cytokine production during immune response;0.0297347824709091!GO:0002700;regulation of production of molecular mediator of immune response;0.0297347824709091!GO:0006749;glutathione metabolic process;0.0297347824709091!GO:0006007;glucose catabolic process;0.0297347824709091!GO:0030308;negative regulation of cell growth;0.0299087299942569!GO:0030258;lipid modification;0.0303749377334092!GO:0030119;AP-type membrane coat adaptor complex;0.0304403997179471!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0304403997179471!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0304403997179471!GO:0008286;insulin receptor signaling pathway;0.0309784195846659!GO:0002237;response to molecule of bacterial origin;0.0310003985310272!GO:0032640;tumor necrosis factor production;0.0310003985310272!GO:0015036;disulfide oxidoreductase activity;0.0310842548866694!GO:0045603;positive regulation of endothelial cell differentiation;0.0314392535053356!GO:0006376;mRNA splice site selection;0.0315255420037063!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0315255420037063!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0321537010859372!GO:0002520;immune system development;0.0321537010859372!GO:0045113;regulation of integrin biosynthetic process;0.0322977397319875!GO:0045112;integrin biosynthetic process;0.0322977397319875!GO:0051235;maintenance of localization;0.0325449129433488!GO:0000278;mitotic cell cycle;0.032681518007725!GO:0032760;positive regulation of tumor necrosis factor production;0.0327082468576283!GO:0016311;dephosphorylation;0.0328614584165542!GO:0008312;7S RNA binding;0.0329265927945102!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0329520050813073!GO:0006689;ganglioside catabolic process;0.0329891096244534!GO:0008656;caspase activator activity;0.0330241777209544!GO:0042110;T cell activation;0.0338863983593515!GO:0004722;protein serine/threonine phosphatase activity;0.0339760528724822!GO:0017091;AU-rich element binding;0.0340582251724406!GO:0050779;RNA destabilization;0.0340582251724406!GO:0000289;poly(A) tail shortening;0.0340582251724406!GO:0001775;cell activation;0.0340801595997141!GO:0003725;double-stranded RNA binding;0.0341741740286322!GO:0008287;protein serine/threonine phosphatase complex;0.0346985240644881!GO:0051347;positive regulation of transferase activity;0.0348119880601468!GO:0045639;positive regulation of myeloid cell differentiation;0.0351463797771075!GO:0046474;glycerophospholipid biosynthetic process;0.0351874730142439!GO:0043299;leukocyte degranulation;0.0353753566992223!GO:0004563;beta-N-acetylhexosaminidase activity;0.0354890853193319!GO:0005788;endoplasmic reticulum lumen;0.035519694918954!GO:0046649;lymphocyte activation;0.0359277589366619!GO:0008017;microtubule binding;0.0359904786072956!GO:0004672;protein kinase activity;0.0361312050029125!GO:0008270;zinc ion binding;0.0372103910348799!GO:0006509;membrane protein ectodomain proteolysis;0.0372548838087269!GO:0033619;membrane protein proteolysis;0.0372548838087269!GO:0019210;kinase inhibitor activity;0.0372752318949971!GO:0005669;transcription factor TFIID complex;0.0376813230681392!GO:0004218;cathepsin S activity;0.0386338935789485!GO:0002521;leukocyte differentiation;0.0398267037829564!GO:0009306;protein secretion;0.0399169237168921!GO:0008361;regulation of cell size;0.0399169237168921!GO:0002252;immune effector process;0.0401768916720876!GO:0048534;hemopoietic or lymphoid organ development;0.0403286660536737!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0404242580824161!GO:0044255;cellular lipid metabolic process;0.0407292524813038!GO:0042611;MHC protein complex;0.0410720205432179!GO:0000118;histone deacetylase complex;0.041350098133579!GO:0042348;NF-kappaB import into nucleus;0.0415890070246129!GO:0042345;regulation of NF-kappaB import into nucleus;0.0415890070246129!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0418224794532239!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0418224794532239!GO:0003711;transcription elongation regulator activity;0.0418224794532239!GO:0015980;energy derivation by oxidation of organic compounds;0.0422396119494958!GO:0006355;regulation of transcription, DNA-dependent;0.0423888570833658!GO:0048146;positive regulation of fibroblast proliferation;0.0426095195609811!GO:0030522;intracellular receptor-mediated signaling pathway;0.0427788058125165!GO:0030131;clathrin adaptor complex;0.0427788058125165!GO:0045309;protein phosphorylated amino acid binding;0.04322794019199!GO:0008538;proteasome activator activity;0.0435922681698514!GO:0031327;negative regulation of cellular biosynthetic process;0.0437804245652626!GO:0004702;receptor signaling protein serine/threonine kinase activity;0.0439934992394983!GO:0006006;glucose metabolic process;0.0441240183620599!GO:0005791;rough endoplasmic reticulum;0.0447068508962795!GO:0004704;NF-kappaB-inducing kinase activity;0.0452423752366545!GO:0048144;fibroblast proliferation;0.0452423752366545!GO:0048145;regulation of fibroblast proliferation;0.0452423752366545!GO:0006979;response to oxidative stress;0.0454476243421449!GO:0045920;negative regulation of exocytosis;0.0454476243421449!GO:0043301;negative regulation of leukocyte degranulation;0.0454476243421449!GO:0043305;negative regulation of mast cell degranulation;0.0454476243421449!GO:0008320;protein transmembrane transporter activity;0.0454659069487593!GO:0005975;carbohydrate metabolic process;0.0460299200507127!GO:0019901;protein kinase binding;0.04786392409446!GO:0032507;maintenance of cellular protein localization;0.0481682845212295!GO:0046489;phosphoinositide biosynthetic process;0.0482613349837768!GO:0045746;negative regulation of Notch signaling pathway;0.04912501961108!GO:0002824;positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0493641273639124!GO:0002821;positive regulation of adaptive immune response;0.0493641273639124!GO:0019058;viral infectious cycle;0.0494807996371358!GO:0051920;peroxiredoxin activity;0.049924525318057
|sample_id=11867
|sample_id=11867
|sample_note=
|sample_note=
Line 76: Line 100:
|sample_tissue=
|sample_tissue=
|top_motifs=NFE2L2:3.05565922334;NFE2:2.92374304945;BACH2:2.76063540988;SPI1:2.7302077956;SREBF1,2:2.72290143794;CEBPA,B_DDIT3:2.71356017814;FOSL2:2.66910252537;SPIB:2.64666754326;EP300:2.56269659627;PAX2:2.53174746634;FOS_FOS{B,L1}_JUN{B,D}:2.50855572793;FOXP3:2.40863558322;NANOG{mouse}:2.30801396218;ETS1,2:2.18676015995;HLF:2.1732758532;NFE2L1:2.08000935595;ATF5_CREB3:1.97869973617;DMAP1_NCOR{1,2}_SMARC:1.96893427901;NFIL3:1.90414403473;NR1H4:1.86070886273;FOXN1:1.80729264399;ATF4:1.77864271789;RUNX1..3:1.76712680517;NFKB1_REL_RELA:1.70412806705;RXRA_VDR{dimer}:1.61274054066;FOXD3:1.57537995714;ELF1,2,4:1.52144325648;ATF6:1.51887729897;HMX1:1.3847005452;ESRRA:1.27230272643;IRF1,2:1.22990238642;PPARG:1.21301977377;MAFB:1.1516079885;HES1:1.13083988556;SMAD1..7,9:1.09701222705;CREB1:1.09344169022;JUN:1.01192570477;PDX1:0.999952151332;PITX1..3:0.999772515729;TFCP2:0.977243212317;GLI1..3:0.864300680472;NR6A1:0.841662093732;BPTF:0.788812813411;ESR1:0.778287907605;TGIF1:0.764816766595;HIF1A:0.733505977248;TLX2:0.728442784487;FOXO1,3,4:0.722125113801;CDX1,2,4:0.644081547484;ALX4:0.615370526605;SPZ1:0.595505822371;STAT2,4,6:0.586307341386;IRF7:0.552314768722;ZBTB16:0.488040575416;HMGA1,2:0.450531316998;ATF2:0.433364057585;PAX4:0.377510054695;FOX{F1,F2,J1}:0.352824147595;IKZF2:0.328203306135;PAX1,9:0.232739292859;ALX1:0.222855662653;NANOG:0.15155972878;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.14035877931;RFX2..5_RFXANK_RFXAP:0.136860023115;RREB1:0.136552242401;PRDM1:0.113998735482;FOX{D1,D2}:0.104486732295;XBP1:0.09963515171;HBP1_HMGB_SSRP1_UBTF:0.0882506057854;GATA4:0.0745941883237;EN1,2:0.0596442360634;FOXP1:0.0500697953098;PAX3,7:0.00330525678802;NFATC1..3:-0.0294524269776;HSF1,2:-0.0681488028041;MYB:-0.0802509472538;HOX{A5,B5}:-0.0848420759494;PAX8:-0.0996186676607;RXR{A,B,G}:-0.114587101411;TFAP4:-0.119606301513;FOXL1:-0.19029099805;NKX2-2,8:-0.198725861833;ZBTB6:-0.226027069954;ZIC1..3:-0.244795529832;NFIX:-0.279325124138;AHR_ARNT_ARNT2:-0.303786185168;SRF:-0.317570001184;TBP:-0.321632069357;NKX3-1:-0.409196402533;HNF4A_NR2F1,2:-0.432479185005;MZF1:-0.438701877648;NKX3-2:-0.448688845932;ZNF148:-0.453303182414;MYFfamily:-0.473785340338;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.474348461677;DBP:-0.479228284889;PATZ1:-0.494089446635;OCT4_SOX2{dimer}:-0.533086788093;TAL1_TCF{3,4,12}:-0.541611894787;STAT5{A,B}:-0.554327536987;EGR1..3:-0.576778075649;MEF2{A,B,C,D}:-0.635236298257;FOXM1:-0.646277252744;TOPORS:-0.647550815144;REST:-0.678412931108;HNF1A:-0.704624747319;AIRE:-0.725917908148;NKX6-1,2:-0.728978270944;T:-0.730040996543;UFEwm:-0.747128128775;TBX4,5:-0.749089539209;ZNF238:-0.756993941223;IKZF1:-0.775530481961;HOXA9_MEIS1:-0.779002424681;GCM1,2:-0.795351854282;POU5F1:-0.854176032421;EVI1:-0.891274721094;MED-1{core}:-0.906393969074;NHLH1,2:-0.952061290181;PRRX1,2:-0.95249028043;VSX1,2:-0.987333101336;TFAP2{A,C}:-0.999765610143;POU2F1..3:-1.00578683313;GZF1:-1.03659385002;KLF4:-1.07069364487;EBF1:-1.07408172245;FOXA2:-1.11889077399;SOX2:-1.1202073302;MTF1:-1.12224852771;ZFP161:-1.12295594319;GATA6:-1.13039831377;POU6F1:-1.13263846438;ZNF423:-1.13615033361;CUX2:-1.1446824169;MYOD1:-1.14754483395;MTE{core}:-1.17913989299;TEF:-1.21820806619;TLX1..3_NFIC{dimer}:-1.21966897837;SOX5:-1.22029826619;RFX1:-1.22151757912;GTF2A1,2:-1.24283578014;PAX6:-1.28613710641;SP1:-1.29793126724;GTF2I:-1.33778443634;TFAP2B:-1.33976379606;TP53:-1.3421385196;STAT1,3:-1.35498915138;RBPJ:-1.3609628613;NKX2-1,4:-1.37191153709;LMO2:-1.38494530645;TEAD1:-1.39709788421;MAZ:-1.41078430852;ZEB1:-1.41863075546;PAX5:-1.4310636884;ARID5B:-1.45227222573;ZNF384:-1.47100761452;SOX{8,9,10}:-1.50455646929;RORA:-1.52225389223;TFDP1:-1.53935818916;HIC1:-1.54609064802;ONECUT1,2:-1.54894613006;XCPE1{core}:-1.58594981351;E2F1..5:-1.59725678739;ELK1,4_GABP{A,B1}:-1.59908004565;SNAI1..3:-1.6059675099;BREu{core}:-1.62774945351;CRX:-1.65488232999;NKX2-3_NKX2-5:-1.66210185436;AR:-1.7027976308;HOX{A4,D4}:-1.71379455024;NR3C1:-1.72241267987;HAND1,2:-1.74091825246;ADNP_IRX_SIX_ZHX:-1.76927710371;NR5A1,2:-1.77738258832;MYBL2:-1.93111928713;HOX{A6,A7,B6,B7}:-1.93336574963;FOXQ1:-1.97847317459;YY1:-2.00377121914;POU1F1:-2.04665307311;FOX{I1,J2}:-2.08200939946;GFI1B:-2.42783276087;POU3F1..4:-2.43552202255;bHLH_family:-2.44740387168;NFY{A,B,C}:-2.46981492723;SOX17:-2.4872280973;LHX3,4:-2.54382363259;PBX1:-2.6250133259;NRF1:-2.68226632333;GFI1:-2.83715091918;CDC5L:-2.84598560704;ZNF143:-3.0233602643;LEF1_TCF7_TCF7L1,2:-3.07748302585
|top_motifs=NFE2L2:3.05565922334;NFE2:2.92374304945;BACH2:2.76063540988;SPI1:2.7302077956;SREBF1,2:2.72290143794;CEBPA,B_DDIT3:2.71356017814;FOSL2:2.66910252537;SPIB:2.64666754326;EP300:2.56269659627;PAX2:2.53174746634;FOS_FOS{B,L1}_JUN{B,D}:2.50855572793;FOXP3:2.40863558322;NANOG{mouse}:2.30801396218;ETS1,2:2.18676015995;HLF:2.1732758532;NFE2L1:2.08000935595;ATF5_CREB3:1.97869973617;DMAP1_NCOR{1,2}_SMARC:1.96893427901;NFIL3:1.90414403473;NR1H4:1.86070886273;FOXN1:1.80729264399;ATF4:1.77864271789;RUNX1..3:1.76712680517;NFKB1_REL_RELA:1.70412806705;RXRA_VDR{dimer}:1.61274054066;FOXD3:1.57537995714;ELF1,2,4:1.52144325648;ATF6:1.51887729897;HMX1:1.3847005452;ESRRA:1.27230272643;IRF1,2:1.22990238642;PPARG:1.21301977377;MAFB:1.1516079885;HES1:1.13083988556;SMAD1..7,9:1.09701222705;CREB1:1.09344169022;JUN:1.01192570477;PDX1:0.999952151332;PITX1..3:0.999772515729;TFCP2:0.977243212317;GLI1..3:0.864300680472;NR6A1:0.841662093732;BPTF:0.788812813411;ESR1:0.778287907605;TGIF1:0.764816766595;HIF1A:0.733505977248;TLX2:0.728442784487;FOXO1,3,4:0.722125113801;CDX1,2,4:0.644081547484;ALX4:0.615370526605;SPZ1:0.595505822371;STAT2,4,6:0.586307341386;IRF7:0.552314768722;ZBTB16:0.488040575416;HMGA1,2:0.450531316998;ATF2:0.433364057585;PAX4:0.377510054695;FOX{F1,F2,J1}:0.352824147595;IKZF2:0.328203306135;PAX1,9:0.232739292859;ALX1:0.222855662653;NANOG:0.15155972878;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.14035877931;RFX2..5_RFXANK_RFXAP:0.136860023115;RREB1:0.136552242401;PRDM1:0.113998735482;FOX{D1,D2}:0.104486732295;XBP1:0.09963515171;HBP1_HMGB_SSRP1_UBTF:0.0882506057854;GATA4:0.0745941883237;EN1,2:0.0596442360634;FOXP1:0.0500697953098;PAX3,7:0.00330525678802;NFATC1..3:-0.0294524269776;HSF1,2:-0.0681488028041;MYB:-0.0802509472538;HOX{A5,B5}:-0.0848420759494;PAX8:-0.0996186676607;RXR{A,B,G}:-0.114587101411;TFAP4:-0.119606301513;FOXL1:-0.19029099805;NKX2-2,8:-0.198725861833;ZBTB6:-0.226027069954;ZIC1..3:-0.244795529832;NFIX:-0.279325124138;AHR_ARNT_ARNT2:-0.303786185168;SRF:-0.317570001184;TBP:-0.321632069357;NKX3-1:-0.409196402533;HNF4A_NR2F1,2:-0.432479185005;MZF1:-0.438701877648;NKX3-2:-0.448688845932;ZNF148:-0.453303182414;MYFfamily:-0.473785340338;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.474348461677;DBP:-0.479228284889;PATZ1:-0.494089446635;OCT4_SOX2{dimer}:-0.533086788093;TAL1_TCF{3,4,12}:-0.541611894787;STAT5{A,B}:-0.554327536987;EGR1..3:-0.576778075649;MEF2{A,B,C,D}:-0.635236298257;FOXM1:-0.646277252744;TOPORS:-0.647550815144;REST:-0.678412931108;HNF1A:-0.704624747319;AIRE:-0.725917908148;NKX6-1,2:-0.728978270944;T:-0.730040996543;UFEwm:-0.747128128775;TBX4,5:-0.749089539209;ZNF238:-0.756993941223;IKZF1:-0.775530481961;HOXA9_MEIS1:-0.779002424681;GCM1,2:-0.795351854282;POU5F1:-0.854176032421;EVI1:-0.891274721094;MED-1{core}:-0.906393969074;NHLH1,2:-0.952061290181;PRRX1,2:-0.95249028043;VSX1,2:-0.987333101336;TFAP2{A,C}:-0.999765610143;POU2F1..3:-1.00578683313;GZF1:-1.03659385002;KLF4:-1.07069364487;EBF1:-1.07408172245;FOXA2:-1.11889077399;SOX2:-1.1202073302;MTF1:-1.12224852771;ZFP161:-1.12295594319;GATA6:-1.13039831377;POU6F1:-1.13263846438;ZNF423:-1.13615033361;CUX2:-1.1446824169;MYOD1:-1.14754483395;MTE{core}:-1.17913989299;TEF:-1.21820806619;TLX1..3_NFIC{dimer}:-1.21966897837;SOX5:-1.22029826619;RFX1:-1.22151757912;GTF2A1,2:-1.24283578014;PAX6:-1.28613710641;SP1:-1.29793126724;GTF2I:-1.33778443634;TFAP2B:-1.33976379606;TP53:-1.3421385196;STAT1,3:-1.35498915138;RBPJ:-1.3609628613;NKX2-1,4:-1.37191153709;LMO2:-1.38494530645;TEAD1:-1.39709788421;MAZ:-1.41078430852;ZEB1:-1.41863075546;PAX5:-1.4310636884;ARID5B:-1.45227222573;ZNF384:-1.47100761452;SOX{8,9,10}:-1.50455646929;RORA:-1.52225389223;TFDP1:-1.53935818916;HIC1:-1.54609064802;ONECUT1,2:-1.54894613006;XCPE1{core}:-1.58594981351;E2F1..5:-1.59725678739;ELK1,4_GABP{A,B1}:-1.59908004565;SNAI1..3:-1.6059675099;BREu{core}:-1.62774945351;CRX:-1.65488232999;NKX2-3_NKX2-5:-1.66210185436;AR:-1.7027976308;HOX{A4,D4}:-1.71379455024;NR3C1:-1.72241267987;HAND1,2:-1.74091825246;ADNP_IRX_SIX_ZHX:-1.76927710371;NR5A1,2:-1.77738258832;MYBL2:-1.93111928713;HOX{A6,A7,B6,B7}:-1.93336574963;FOXQ1:-1.97847317459;YY1:-2.00377121914;POU1F1:-2.04665307311;FOX{I1,J2}:-2.08200939946;GFI1B:-2.42783276087;POU3F1..4:-2.43552202255;bHLH_family:-2.44740387168;NFY{A,B,C}:-2.46981492723;SOX17:-2.4872280973;LHX3,4:-2.54382363259;PBX1:-2.6250133259;NRF1:-2.68226632333;GFI1:-2.83715091918;CDC5L:-2.84598560704;ZNF143:-3.0233602643;LEF1_TCF7_TCF7L1,2:-3.07748302585
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11867-125B4;search_select_hide=table117:FF:11867-125B4
}}
}}

Latest revision as of 18:24, 4 June 2020

Name:CD14+ monocytes - treated with Cryptococcus, donor1
Species:Human (Homo sapiens)
Library ID:CNhs13472
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexfemale
age69
cell typemonocyte
cell lineNA
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberD3-8
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005251
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13472 CAGE DRX008144 DRR009016
Accession ID Hg19

Library idBAMCTSS
CNhs13472 DRZ000441 DRZ001826
Accession ID Hg38

Library idBAMCTSS
CNhs13472 DRZ011791 DRZ013176
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.288
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.00693
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.589
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C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.244
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13472

Jaspar motifP-value
MA0002.21.1074e-7
MA0003.10.307
MA0004.10.446
MA0006.10.797
MA0007.10.757
MA0009.10.196
MA0014.10.938
MA0017.10.0495
MA0018.20.188
MA0019.10.539
MA0024.10.00146
MA0025.10.0196
MA0027.10.965
MA0028.10.171
MA0029.10.283
MA0030.10.447
MA0031.10.611
MA0035.20.216
MA0038.10.0337
MA0039.20.709
MA0040.10.244
MA0041.10.165
MA0042.10.542
MA0043.13.05495e-4
MA0046.10.0319
MA0047.20.915
MA0048.10.882
MA0050.15.12377e-4
MA0051.10.167
MA0052.10.319
MA0055.10.74
MA0057.10.65
MA0058.10.248
MA0059.10.348
MA0060.15.11451e-12
MA0061.14.59547e-5
MA0062.20.581
MA0065.20.00931
MA0066.10.0202
MA0067.16.86152e-4
MA0068.10.184
MA0069.10.839
MA0070.10.0434
MA0071.10.224
MA0072.10.834
MA0073.10.333
MA0074.10.122
MA0076.10.132
MA0077.10.155
MA0078.10.481
MA0079.20.415
MA0080.23.95088e-15
MA0081.12.75899e-4
MA0083.10.836
MA0084.10.721
MA0087.10.857
MA0088.10.521
MA0090.10.197
MA0091.10.544
MA0092.10.224
MA0093.10.483
MA0099.23.33048e-40
MA0100.10.589
MA0101.14.72259e-4
MA0102.23.14091e-7
MA0103.10.542
MA0104.20.896
MA0105.12.53292e-8
MA0106.10.808
MA0107.14.38552e-5
MA0108.20.00813
MA0111.10.458
MA0112.25.22809e-5
MA0113.10.77
MA0114.10.201
MA0115.10.763
MA0116.12.92398e-4
MA0117.10.18
MA0119.10.317
MA0122.10.857
MA0124.10.938
MA0125.10.284
MA0131.10.408
MA0135.10.718
MA0136.16.24254e-15
MA0137.20.721
MA0138.20.859
MA0139.10.996
MA0140.10.118
MA0141.10.0466
MA0142.10.798
MA0143.10.652
MA0144.10.311
MA0145.10.241
MA0146.10.0803
MA0147.10.924
MA0148.10.828
MA0149.10.199
MA0150.11.46344e-15
MA0152.10.518
MA0153.10.0011
MA0154.10.00204
MA0155.10.58
MA0156.12.44518e-7
MA0157.10.967
MA0159.10.0109
MA0160.10.0246
MA0162.10.667
MA0163.12.91309e-7
MA0164.10.561
MA0258.10.00263
MA0259.10.562



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13472

Novel motifP-value
10.0921
100.0236
1000.816
1010.87
1020.523
1030.275
1040.564
1050.254
1065.59661e-4
1070.164
1080.868
1090.201
110.115
1100.256
1110.0201
1120.242
1130.586
1140.011
1150.427
1160.717
1170.0461
1180.174
1190.142
120.352
1200.985
1210.496
1220.736
1230.0857
1240.53
1250.395
1260.218
1270.295
1280.0164
1290.524
130.18
1300.124
1310.656
1320.108
1330.699
1340.536
1350.331
1360.836
1370.00948
1380.192
1390.018
140.467
1400.0946
1410.341
1420.462
1430.0171
1440.684
1450.4
1460.439
1470.423
1480.00773
1490.581
150.135
1500.474
1510.306
1520.139
1530.509
1540.58
1550.326
1560.792
1570.285
1580.0556
1590.918
160.303
1600.356
1610.474
1620.531
1630.188
1640.0862
1650.162
1660.52
1670.214
1680.34
1690.0073
170.165
180.11
190.272
20.974
200.336
210.349
220.219
230.0406
240.369
250.41
260.0328
270.974
280.494
290.274
30.0895
300.529
310.743
320.875
330.407
340.471
350.132
360.148
370.0717
380.331
390.682
40.851
400.184
410.0124
420.375
430.0332
440.757
450.698
460.118
470.456
480.398
490.0917
50.234
500.992
510.333
520.29
530.361
540.295
550.482
560.647
570.751
580.135
590.107
60.514
600.0379
610.49
620.049
630.434
640.396
650.184
660.193
670.444
680.639
690.888
70.266
700.0114
710.0318
720.251
730.13
740.101
750.0846
760.26
770.359
780.0685
790.0537
80.287
800.27
810.367
820.0732
830.26
840.423
850.00693
860.0626
870.496
880.614
890.175
90.319
900.0651
910.283
920.172
930.413
940.0301
950.31
960.377
970.914
980.127
990.168



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13472


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000634 (Cryptococcus treatment sample)
0011105 (human CD14-positive monocytes - treated with Cryptococcus sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

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