Personal tools

FF:11870-125B7: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(5 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004743
|DRA_sample_Accession=CAGE@SAMD00004743
|accession_numbers=CAGE;DRX008139;DRR009011;DRZ000436;DRZ001821
|accession_numbers=CAGE;DRX008139;DRR009011;DRZ000436;DRZ001821;DRZ011786;DRZ013171
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
Line 42: Line 42:
|fonse_treatment_closure=FF:0000625,FF:0000628,FF:0011103,FF:11870-125B7
|fonse_treatment_closure=FF:0000625,FF:0000628,FF:0011103,FF:11870-125B7
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor2.CNhs13475.11870-125B7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor2.CNhs13475.11870-125B7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor2.CNhs13475.11870-125B7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor2.CNhs13475.11870-125B7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520BCG%252c%2520donor2.CNhs13475.11870-125B7.hg38.nobarcode.ctss.bed.gz
|id=FF:11870-125B7
|id=FF:11870-125B7
|is_a=EFO:0002091;;FF:0011103
|is_a=EFO:0002091;;FF:0011103
Line 47: Line 52:
|library_id=CNhs13475
|library_id=CNhs13475
|library_id_phase_based=2:CNhs13475
|library_id_phase_based=2:CNhs13475
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11870
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11870
|name=CD14+ monocytes - treated with BCG, donor2
|name=CD14+ monocytes - treated with BCG, donor2
|namespace=
|namespace=
Line 54: Line 63:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0.51013808088512,0.0748477166162797,0,0.0990452042849908,0.306348418993444,0.146030388907058,0,0.763646133122347,0.631879034146732,0,0.247600673195823,0,0,0,0,0,0,0,0,0.247600673195823,0,0,0.094277662847395,0,0,0,0.153174209496722,0,0.306356449219894,0,0.275823002090708,0.477056810503611,0,0,0,0,0,0.0495226021424954,0,0.581809507482363,0,0,0.0990452042849908,0,0.324254184802128,0.358087876963302,0,0,0,0,0,0,0,0.099585315485077,0,0,0,0,0,-0.085911789191307,0.0990452042849908,0.484817146239758,0,0.80477812102588,0.0823004741923391,0,0.689948969114766,0,0,0,0.0990452042849908,0.0990452042849908,0.179644101405436,0.179644101405436,0,0.358087876963302,0,0,0.404314345487951,0,0,0,0.0990452042849908,0,0,0.179644101405436,0.031836513985251,0,0,-0.520738119673643,0,0,0,0.0405983774731656,0.0938092974453685,0.0495226021424954,0,1.09348235942414,0,0.149565321958116,0.513200680770388,0,0,0.089822050702718,0,0,0.94347009190209,0.179644101405436,0,0,0,0,0,0.24299626019944,0.00713699992692177,0,0,0,-0.00655154321974295,0.0990452042849908,0,0,0.451763279398096,0.434895791372604,0.0990452042849908,0.247600673195823,0.306348418993444,0,0,0
|repeat_enrich_byfamily=0,0,0.51013808088512,0.0748477166162797,0,0.0990452042849908,0.306348418993444,0.146030388907058,0,0.763646133122347,0.631879034146732,0,0.247600673195823,0,0,0,0,0,0,0,0,0.247600673195823,0,0,0.094277662847395,0,0,0,0.153174209496722,0,0.306356449219894,0,0.275823002090708,0.477056810503611,0,0,0,0,0,0.0495226021424954,0,0.581809507482363,0,0,0.0990452042849908,0,0.324254184802128,0.358087876963302,0,0,0,0,0,0,0,0.099585315485077,0,0,0,0,0,-0.085911789191307,0.0990452042849908,0.484817146239758,0,0.80477812102588,0.0823004741923391,0,0.689948969114766,0,0,0,0.0990452042849908,0.0990452042849908,0.179644101405436,0.179644101405436,0,0.358087876963302,0,0,0.404314345487951,0,0,0,0.0990452042849908,0,0,0.179644101405436,0.031836513985251,0,0,-0.520738119673643,0,0,0,0.0405983774731656,0.0938092974453685,0.0495226021424954,0,1.09348235942414,0,0.149565321958116,0.513200680770388,0,0,0.089822050702718,0,0,0.94347009190209,0.179644101405436,0,0,0,0,0,0.24299626019944,0.00713699992692177,0,0,0,-0.00655154321974295,0.0990452042849908,0,0,0.451763279398096,0.434895791372604,0.0990452042849908,0.247600673195823,0.306348418993444,0,0,0
|repeat_enrich_byname=0,0,0.0990452042849908,0,0.149565321958116,0,0,0,0.484198110287823,0,0,0,0.179644101405436,0,0,0,-0.0675347738801284,0,0.0775597854294071,-0.0444699382384811,0.384210021410513,0.0990452042849908,-0.185180031765659,0,0.0990452042849908,0,0.0495226021424954,0.610013400282474,0,0.66145771448084,0.446090363562068,0,0.0515242344528714,0.66145771448084,-0.0504125515893149,0.123800336597911,0,0,0,0,0.548703621897406,0.610013400282474,-0.0504577245515985,-0.0683442610773682,0,0,0,0,-0.130896016489111,0,-0.0218342795087498,-0.0827201683234173,0,-0.459841540648471,0.259543760101064,0,0,0,-0.464450279207663,-0.0311836565762325,0,0,0.320339589467766,0.312248009847669,0,0,-0.391044581551635,0,0.511047947931255,0.0346168732956518,0,0,0.306348418993444,0,0,0,0,0,0,0,0.0990452042849908,0,0,0.386052832566338,0.283024803603505,0.191529819705232,0,0,0,-0.452326226045907,0,0,0.891978195304284,-0.350736013296859,0,0.0960809811234448,0,0.707137033452698,0.232328671940356,0.251858823212122,0.329116081049764,-0.147401849371139,-0.189981719549847,0.000373898380124305,-0.804377587819969,-0.302074518826189,0.058186624056617,0.165695573031155,-0.078396946898956,0.140437469857641,-0.450576919475933,0,0,0,-0.585499685831993,0,0.0990452042849908,-0.183766295483329,-0.092646822429936,-0.365980736334475,0.29661883846724,-0.501705615164735,-0.00929714027568918,-0.0395325284566706,-0.0531221074086436,-0.0151777908032484,-0.4215723249037,0,0.51923011376359,0,0.212575138204833,0.0835553390396022,0.73669398567058,0,0.546788452161445,0.0307009432076226,0,0.322383645819853,-0.294402101462777,0,0,0.226000890154468,0.0990452042849908,0,0,0,0,-0.664511629917953,-0.291891469834344,0.125232315407758,0,-0.118466247641157,0,-0.118242141870935,0,0.165582087064485,0.104177657382639,0,0.0654540723670665,0,-0.15160751263306,-0.0601650275366327,-0.164990696339003,-0.422394805391737,0.0405983774731656,0.46975788335151,0.0963974692755547,-0.103022613093658,0.186643727951354,-0.0356862886035119,0.0109183718097031,0,-0.301735243036017,0.907714555082789,0.0249344497959994,-0.459729567631661,0,-0.253190375209551,0,0.451728579853153,0.126537750541156,0.00427275177240871,-0.234085332479796,0.69271000039191,0.777190580604248,0,-0.183131963611216,-0.788130937773974,0,-0.0862366441766855,0,0,-0.150367083334639,-0.697695966512583,0.394901431466538,-0.0894668545366992,0,-0.790080158389657,0,0.0990452042849908,-0.243547399728009,-0.136430833479398,0.0990452042849908,0.0832407461707819,0.411073247556848,-0.0224065337129311,0.063673027970502,0.179644101405436,0,-0.645700337992725,-0.0512691110638436,0,-0.60592806381803,-0.0636048451378017,-0.520738119673643,0.766949820283489,0,0.104999577846374,0,0,-0.0784825616801848,0.0990452042849908,0.0083042657622364,0,0.581809507482363,0.130845507845076,0,0,0.596578449211135,0,0.0468333645861473,0,0.22638110523549,0,0,0,0,0,0.10587655104506,-0.354833330216448,0.179644101405436,-0.355787055864078,0,0.0990452042849908,0,0,0,0.0134137090674841,0,0,-1.23424296185637,-0.0583098546190381,-0.12301741567642,0,0,0.0495226021424954,0,-0.215723402553475,0.242853801467345,0,0.419783297683784,0,0,0,0,0.31817335569874,0,0.404314345487951,0,0.0495226021424954,0.5240790504287,0.218267527233008,0,0,0,0.84675726013534,0,0,0,0,0.359418438670997,0,0,0.131429744999642,0,0.36311645021833,0.0174633247381494,0,0.162597801238323,0.096638854911165,-1.06201966745264,0,0,0.184743231772181,0,0,0.135275251638779,0.0972738784397698,0.179644101405436,0,0,0,0.202157172743975,0,0,1.70276660856046,-0.214314512399756,0.0260460815189878,0,0,0,0.0990452042849908,1.81488882111951,0,0,0,0,0,0.26798718367338,-0.0922240566585104,0,0,0,0,0,0.139344652845213,0,-0.0241060230789031,-0.0655360353652137,0,0,0.0916180223919947,0,0.179644101405436,0.179644101405436,0,0,0.0802200645181734,0,0,0,0,0,0.484817146239758,0,0.0990452042849908,0.306348418993444,1.02027616177024,0.681948560811101,0,0,0.763646133122347,0,0,0,0,0,0,0.0479504973867841,0,0,0,0,0,0,0.124281587160375,0.81770349025382,0,0.0990452042849908,0,0,0,0,0,0.637521619504887,0,0.581809507482363,0,0,1.90518588921519,0,0,0,0.0748477166162797,0,0.146030388907058,0.0990452042849908,0.0990452042849908,0,0.223045181781034,0,0.00308579691140394,0,0.0495226021424954,0,0.51923011376359,0.179644101405436,0,0,0,0.24299626019944,0.139344652845213,0.821875979839758,0,0.0495226021424954,0,0,-0.741184546849395,0.0218111820466387,0,0,0,0,-0.183105750490546,0,0,0,0,0,0.625002623203118,0.058481626674191,0,0.00634542375797209,0,0.306348418993444,0,0,0,0.33072885724042,0.0495226021424954,0.963652920614639,0,0,0.381201111225626,0,0,0.0690200628369132,0,0,0.0990452042849908,0,0,0.404314345487951,0,0.179644101405436,0.123800336597911,0.0834181301154327,0,0,0,0,0,0,0,0.306356449219894,0,0,0.859174091291268,0,0,0,0,0,0,-0.134802631159988,-0.233697797680652,-0.0731020725560806,0,0,0,-0.054385572482455,0,0,-0.135590552982328,0.0990452042849908,-0.0667773874189013,0,0,0.963652920614639,0.0495226021424954,0,0,0,0,0,0,0,0.0495226021424954,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355331382240697,0,0,0,0,0.094277662847395,0,0,0.179644101405436,0,0,0.0990452042849908,0.179043938481651,0,0,0,0,0.152666982632352,0.089822050702718,0.179644101405436,0,0,0,0,0.089822050702718,0,0,0,0,0,0,0,0.247600673195823,0.247600673195823,0.139344652845213,0,0.272567783923529,0,0,0,1.24675568196499,0.41024486461247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342530805693895,0,0,0,0.0990452042849908,0.404179642019185,0,0,0,1.2669540828655,0,0,0,0,0,0,0.179644101405436,0,0.306348418993444,0,0,0,0,0,0,0,0,0,0,0,0.306348418993444,0,0,0,0,0,0,0,0,0,0,0,0.63649684141148,0,0,0,0.358087876963302,0,0.358087876963302,0,0.432897260824087,0,0,0,0,0,0,0,0,0.0990452042849908,0.581809507482363,0,0,0,0.25812634375439,0,0.163224040965796,0,0,0,0,0,0,0,0,0,0,0,0.484198110287823,0.0495226021424954,0,0,0,0.642652855906559,0,0,0,0,0.562376289621555,0.0990452042849908,0,0,0,0,0,0,0.0495226021424954,0,0,0,0,0,0,0,0,0,0,0.0495226021424954,0,0,0.514809434532521,0,0,0.128061884839114,0,0,0.0470489111238371,0,0,0.0695223841850325,0,0,0,0,0,0,0.575176662261354,0,0.0990452042849908,0,0,0,0,0,0,0,0,0.199170630970154,0,0,1.51539595770796,0,0.581809507482363,0,0,0,0,0,0,0,0,0,0,0.242099055143912,0.66145771448084,1.25301329321389,0,0.247600673195823,0,0,0.358087876963302,0,0,0,0.179644101405436,0,0,0,0.456492042638089,0.434895791372604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332218147978373,0,0.912354917710978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306348418993444,0,0,0,0,0,0.123800336597911,0,0,0,0,0,0,0,0,0,0,0,0,0,0.080009646966064,0.089822050702718,0.0495226021424954,0,0,0,0.179644101405436,0,0,0,0,0.247600673195823,0,0,0,0,0,0,0,0,0,0,0,0,0.434733723073462,0,0,0.0495226021424954,0,0,0.0693482819123151,0.123800336597911,0,0,0.089822050702718,0.247600673195823,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0990452042849908,0.259615056881795,0,0.089822050702718,0,0.0495226021424954,0,0,0,0,0,0.51923011376359,0,0,0,0,0,0,0.446090363562068,0,0,0,0.0495226021424954,0,0,0.089822050702718,0,0,0,0.0495226021424954,0.30364557543748,0,0,0,0,0,0,0.0990452042849908,0,0,0,0,0,0,0,0,0,0,0.464338033153463,0,0.0948007241504005,0,0,0,0,0,0,0,0,-0.620396418749604,0,0,0,0.0990452042849908,0,0,0,0.247600673195823,0,0,0.179043938481651,0,0,0.179644101405436,0,0,0,0,0,0,0.179644101405436,0,0,0,0.0990452042849908,0,0,0.610013400282474,0,0.179644101405436,0,0,0,0,0.0495226021424954,0,0,0,0,0.0516850318741907,0.925758560590326,0.442602334113105,0,0.179644101405436,0,0,0,0.0990452042849908,0,0.533003808885093,0,0,0.247600673195823,0,0,0,0.202157172743975,0,0,0,0,0.404314345487951,0.925758560590326,0,0,0.0495226021424954,0,-0.0131030864394859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247600673195823,0.57405745558022,0.907722610654316,0,0,0.963652920614639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.089822050702718,0.247600673195823,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.034427285110015,-0.0581912100015161,0,0,0,0,0,0,0,-0.0236507927120101,0,0,0,0,0,0,0,0,0,0,0,0.306348418993444,0,0,0,0,0,0.728737740516417,0,0.0990452042849908,0.0495226021424954,0,0,0.0990452042849908,0.728737740516417,0.803209785027712,0.358087876963302,0,0,0.0990452042849908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0495226021424954,0,0.0660822671851561,0.125708445510541,0,0,0,0,0,0,0.139344652845213,0,0,0,0,1.20718938978646,0,0,0,0,0.521843334884013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139344652845213,0,0,0,0,0.0495226021424954,0,0.0495226021424954,0,0,0,0.688678044156048,0,0,0,0,0,0,0.306348418993444,0,0,0.291979223446693,0.493061926485157,0,0,0,0,0,0,0,0.0823004741923391,0,0,0.80477812102588,0,0,0,0.358087876963302,0,0,0.179644101405436,0,0,0,0,0,0.0990452042849908,0,0,0,0,0,0.477056810503611,0,0,0,0,0,0.551646004181416,0.247600673195823,0,0,0.306348418993444,0,0,0,0,0,0.089822050702718,0,0,0,0,0,0,0,0,0,0.179644101405436,0,0.917772017499155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11837952064427,0,0,0,0,0,0.202157172743975,0,0,0,0.331263128704041,0.259615056881795,0.0990452042849908,0,0,0.0990452042849908,0,0,0.305006700141237,0.0990452042849908,0.0150189686911568,0.249654662213375,0.153174209496722,0,0,0.689948969114766,0.581809507482363,0,0,0.110722801923366,0,0,0,0,0,0,0.358087876963302,0.089822050702718,0,0.768420042821026,0.143009216975832,0,0,1.12893210479491,0,0.475314666939708,0,0,0,0,0,0,-0.0220203204819844,0,0,0,0,0,0,0,0,0,0.179644101405436,0,0,0,-0.013538165825983,0,0,0,0.0990452042849908,0,0,0,0,0,0,0,0,0.0990452042849908,0,0,0,1.88694018380418,0,0,0.132457275164009,0,0,0.30913765902429,0.124242250164985,0,0.394418937985494,0.643933576793846,0,0,0.374594989935106,0.358087876963302,0.177364234926358,0.488248002971577,0.0990452042849908,0,0.876021722222783,0.707229450947153,0,0,0.139344652845213,0.0990452042849908,0,0,0,0.809901707540546,0.551646004181416,0,0.51923011376359,0,0.228566540624146,0.139344652845213,0,0,0.179644101405436,0,0.389231417399469,0.47955632930692,0,-0.199192152944988,0,0,0.0264435367993898,0,0.089822050702718,0.247600673195823,0.151641265822236
|repeat_enrich_byname=0,0,0.0990452042849908,0,0.149565321958116,0,0,0,0.484198110287823,0,0,0,0.179644101405436,0,0,0,-0.0675347738801284,0,0.0775597854294071,-0.0444699382384811,0.384210021410513,0.0990452042849908,-0.185180031765659,0,0.0990452042849908,0,0.0495226021424954,0.610013400282474,0,0.66145771448084,0.446090363562068,0,0.0515242344528714,0.66145771448084,-0.0504125515893149,0.123800336597911,0,0,0,0,0.548703621897406,0.610013400282474,-0.0504577245515985,-0.0683442610773682,0,0,0,0,-0.130896016489111,0,-0.0218342795087498,-0.0827201683234173,0,-0.459841540648471,0.259543760101064,0,0,0,-0.464450279207663,-0.0311836565762325,0,0,0.320339589467766,0.312248009847669,0,0,-0.391044581551635,0,0.511047947931255,0.0346168732956518,0,0,0.306348418993444,0,0,0,0,0,0,0,0.0990452042849908,0,0,0.386052832566338,0.283024803603505,0.191529819705232,0,0,0,-0.452326226045907,0,0,0.891978195304284,-0.350736013296859,0,0.0960809811234448,0,0.707137033452698,0.232328671940356,0.251858823212122,0.329116081049764,-0.147401849371139,-0.189981719549847,0.000373898380124305,-0.804377587819969,-0.302074518826189,0.058186624056617,0.165695573031155,-0.078396946898956,0.140437469857641,-0.450576919475933,0,0,0,-0.585499685831993,0,0.0990452042849908,-0.183766295483329,-0.092646822429936,-0.365980736334475,0.29661883846724,-0.501705615164735,-0.00929714027568918,-0.0395325284566706,-0.0531221074086436,-0.0151777908032484,-0.4215723249037,0,0.51923011376359,0,0.212575138204833,0.0835553390396022,0.73669398567058,0,0.546788452161445,0.0307009432076226,0,0.322383645819853,-0.294402101462777,0,0,0.226000890154468,0.0990452042849908,0,0,0,0,-0.664511629917953,-0.291891469834344,0.125232315407758,0,-0.118466247641157,0,-0.118242141870935,0,0.165582087064485,0.104177657382639,0,0.0654540723670665,0,-0.15160751263306,-0.0601650275366327,-0.164990696339003,-0.422394805391737,0.0405983774731656,0.46975788335151,0.0963974692755547,-0.103022613093658,0.186643727951354,-0.0356862886035119,0.0109183718097031,0,-0.301735243036017,0.907714555082789,0.0249344497959994,-0.459729567631661,0,-0.253190375209551,0,0.451728579853153,0.126537750541156,0.00427275177240871,-0.234085332479796,0.69271000039191,0.777190580604248,0,-0.183131963611216,-0.788130937773974,0,-0.0862366441766855,0,0,-0.150367083334639,-0.697695966512583,0.394901431466538,-0.0894668545366992,0,-0.790080158389657,0,0.0990452042849908,-0.243547399728009,-0.136430833479398,0.0990452042849908,0.0832407461707819,0.411073247556848,-0.0224065337129311,0.063673027970502,0.179644101405436,0,-0.645700337992725,-0.0512691110638436,0,-0.60592806381803,-0.0636048451378017,-0.520738119673643,0.766949820283489,0,0.104999577846374,0,0,-0.0784825616801848,0.0990452042849908,0.0083042657622364,0,0.581809507482363,0.130845507845076,0,0,0.596578449211135,0,0.0468333645861473,0,0.22638110523549,0,0,0,0,0,0.10587655104506,-0.354833330216448,0.179644101405436,-0.355787055864078,0,0.0990452042849908,0,0,0,0.0134137090674841,0,0,-1.23424296185637,-0.0583098546190381,-0.12301741567642,0,0,0.0495226021424954,0,-0.215723402553475,0.242853801467345,0,0.419783297683784,0,0,0,0,0.31817335569874,0,0.404314345487951,0,0.0495226021424954,0.5240790504287,0.218267527233008,0,0,0,0.84675726013534,0,0,0,0,0.359418438670997,0,0,0.131429744999642,0,0.36311645021833,0.0174633247381494,0,0.162597801238323,0.096638854911165,-1.06201966745264,0,0,0.184743231772181,0,0,0.135275251638779,0.0972738784397698,0.179644101405436,0,0,0,0.202157172743975,0,0,1.70276660856046,-0.214314512399756,0.0260460815189878,0,0,0,0.0990452042849908,1.81488882111951,0,0,0,0,0,0.26798718367338,-0.0922240566585104,0,0,0,0,0,0.139344652845213,0,-0.0241060230789031,-0.0655360353652137,0,0,0.0916180223919947,0,0.179644101405436,0.179644101405436,0,0,0.0802200645181734,0,0,0,0,0,0.484817146239758,0,0.0990452042849908,0.306348418993444,1.02027616177024,0.681948560811101,0,0,0.763646133122347,0,0,0,0,0,0,0.0479504973867841,0,0,0,0,0,0,0.124281587160375,0.81770349025382,0,0.0990452042849908,0,0,0,0,0,0.637521619504887,0,0.581809507482363,0,0,1.90518588921519,0,0,0,0.0748477166162797,0,0.146030388907058,0.0990452042849908,0.0990452042849908,0,0.223045181781034,0,0.00308579691140394,0,0.0495226021424954,0,0.51923011376359,0.179644101405436,0,0,0,0.24299626019944,0.139344652845213,0.821875979839758,0,0.0495226021424954,0,0,-0.741184546849395,0.0218111820466387,0,0,0,0,-0.183105750490546,0,0,0,0,0,0.625002623203118,0.058481626674191,0,0.00634542375797209,0,0.306348418993444,0,0,0,0.33072885724042,0.0495226021424954,0.963652920614639,0,0,0.381201111225626,0,0,0.0690200628369132,0,0,0.0990452042849908,0,0,0.404314345487951,0,0.179644101405436,0.123800336597911,0.0834181301154327,0,0,0,0,0,0,0,0.306356449219894,0,0,0.859174091291268,0,0,0,0,0,0,-0.134802631159988,-0.233697797680652,-0.0731020725560806,0,0,0,-0.054385572482455,0,0,-0.135590552982328,0.0990452042849908,-0.0667773874189013,0,0,0.963652920614639,0.0495226021424954,0,0,0,0,0,0,0,0.0495226021424954,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355331382240697,0,0,0,0,0.094277662847395,0,0,0.179644101405436,0,0,0.0990452042849908,0.179043938481651,0,0,0,0,0.152666982632352,0.089822050702718,0.179644101405436,0,0,0,0,0.089822050702718,0,0,0,0,0,0,0,0.247600673195823,0.247600673195823,0.139344652845213,0,0.272567783923529,0,0,0,1.24675568196499,0.41024486461247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.342530805693895,0,0,0,0.0990452042849908,0.404179642019185,0,0,0,1.2669540828655,0,0,0,0,0,0,0.179644101405436,0,0.306348418993444,0,0,0,0,0,0,0,0,0,0,0,0.306348418993444,0,0,0,0,0,0,0,0,0,0,0,0.63649684141148,0,0,0,0.358087876963302,0,0.358087876963302,0,0.432897260824087,0,0,0,0,0,0,0,0,0.0990452042849908,0.581809507482363,0,0,0,0.25812634375439,0,0.163224040965796,0,0,0,0,0,0,0,0,0,0,0,0.484198110287823,0.0495226021424954,0,0,0,0.642652855906559,0,0,0,0,0.562376289621555,0.0990452042849908,0,0,0,0,0,0,0.0495226021424954,0,0,0,0,0,0,0,0,0,0,0.0495226021424954,0,0,0.514809434532521,0,0,0.128061884839114,0,0,0.0470489111238371,0,0,0.0695223841850325,0,0,0,0,0,0,0.575176662261354,0,0.0990452042849908,0,0,0,0,0,0,0,0,0.199170630970154,0,0,1.51539595770796,0,0.581809507482363,0,0,0,0,0,0,0,0,0,0,0.242099055143912,0.66145771448084,1.25301329321389,0,0.247600673195823,0,0,0.358087876963302,0,0,0,0.179644101405436,0,0,0,0.456492042638089,0.434895791372604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332218147978373,0,0.912354917710978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306348418993444,0,0,0,0,0,0.123800336597911,0,0,0,0,0,0,0,0,0,0,0,0,0,0.080009646966064,0.089822050702718,0.0495226021424954,0,0,0,0.179644101405436,0,0,0,0,0.247600673195823,0,0,0,0,0,0,0,0,0,0,0,0,0.434733723073462,0,0,0.0495226021424954,0,0,0.0693482819123151,0.123800336597911,0,0,0.089822050702718,0.247600673195823,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0990452042849908,0.259615056881795,0,0.089822050702718,0,0.0495226021424954,0,0,0,0,0,0.51923011376359,0,0,0,0,0,0,0.446090363562068,0,0,0,0.0495226021424954,0,0,0.089822050702718,0,0,0,0.0495226021424954,0.30364557543748,0,0,0,0,0,0,0.0990452042849908,0,0,0,0,0,0,0,0,0,0,0.464338033153463,0,0.0948007241504005,0,0,0,0,0,0,0,0,-0.620396418749604,0,0,0,0.0990452042849908,0,0,0,0.247600673195823,0,0,0.179043938481651,0,0,0.179644101405436,0,0,0,0,0,0,0.179644101405436,0,0,0,0.0990452042849908,0,0,0.610013400282474,0,0.179644101405436,0,0,0,0,0.0495226021424954,0,0,0,0,0.0516850318741907,0.925758560590326,0.442602334113105,0,0.179644101405436,0,0,0,0.0990452042849908,0,0.533003808885093,0,0,0.247600673195823,0,0,0,0.202157172743975,0,0,0,0,0.404314345487951,0.925758560590326,0,0,0.0495226021424954,0,-0.0131030864394859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247600673195823,0.57405745558022,0.907722610654316,0,0,0.963652920614639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.089822050702718,0.247600673195823,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.034427285110015,-0.0581912100015161,0,0,0,0,0,0,0,-0.0236507927120101,0,0,0,0,0,0,0,0,0,0,0,0.306348418993444,0,0,0,0,0,0.728737740516417,0,0.0990452042849908,0.0495226021424954,0,0,0.0990452042849908,0.728737740516417,0.803209785027712,0.358087876963302,0,0,0.0990452042849908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0495226021424954,0,0.0660822671851561,0.125708445510541,0,0,0,0,0,0,0.139344652845213,0,0,0,0,1.20718938978646,0,0,0,0,0.521843334884013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139344652845213,0,0,0,0,0.0495226021424954,0,0.0495226021424954,0,0,0,0.688678044156048,0,0,0,0,0,0,0.306348418993444,0,0,0.291979223446693,0.493061926485157,0,0,0,0,0,0,0,0.0823004741923391,0,0,0.80477812102588,0,0,0,0.358087876963302,0,0,0.179644101405436,0,0,0,0,0,0.0990452042849908,0,0,0,0,0,0.477056810503611,0,0,0,0,0,0.551646004181416,0.247600673195823,0,0,0.306348418993444,0,0,0,0,0,0.089822050702718,0,0,0,0,0,0,0,0,0,0.179644101405436,0,0.917772017499155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11837952064427,0,0,0,0,0,0.202157172743975,0,0,0,0.331263128704041,0.259615056881795,0.0990452042849908,0,0,0.0990452042849908,0,0,0.305006700141237,0.0990452042849908,0.0150189686911568,0.249654662213375,0.153174209496722,0,0,0.689948969114766,0.581809507482363,0,0,0.110722801923366,0,0,0,0,0,0,0.358087876963302,0.089822050702718,0,0.768420042821026,0.143009216975832,0,0,1.12893210479491,0,0.475314666939708,0,0,0,0,0,0,-0.0220203204819844,0,0,0,0,0,0,0,0,0,0.179644101405436,0,0,0,-0.013538165825983,0,0,0,0.0990452042849908,0,0,0,0,0,0,0,0,0.0990452042849908,0,0,0,1.88694018380418,0,0,0.132457275164009,0,0,0.30913765902429,0.124242250164985,0,0.394418937985494,0.643933576793846,0,0,0.374594989935106,0.358087876963302,0.177364234926358,0.488248002971577,0.0990452042849908,0,0.876021722222783,0.707229450947153,0,0,0.139344652845213,0.0990452042849908,0,0,0,0.809901707540546,0.551646004181416,0,0.51923011376359,0,0.228566540624146,0.139344652845213,0,0,0.179644101405436,0,0.389231417399469,0.47955632930692,0,-0.199192152944988,0,0,0.0264435367993898,0,0.089822050702718,0.247600673195823,0.151641265822236
Line 91: Line 101:
|top_motifs=STAT2,4,6:5.6873180702;STAT5{A,B}:5.0760598675;NFE2:4.65898972643;FOSL2:4.51699774424;IRF7:4.37666428933;STAT1,3:4.35731913977;NFE2L2:4.30464233454;CEBPA,B_DDIT3:4.25343635409;IRF1,2:4.04942952684;BACH2:4.04449793903;FOS_FOS{B,L1}_JUN{B,D}:3.93877530274;PAX2:3.81814875974;HLF:3.75394877891;SPIB:3.15935565633;NANOG{mouse}:2.91180948729;SREBF1,2:2.88191990142;SPI1:2.87026886345;ETS1,2:2.6609524874;NFKB1_REL_RELA:2.6520852099;NFIL3:2.61402352228;NR1H4:2.59670030543;FOXP3:2.45582888747;DMAP1_NCOR{1,2}_SMARC:2.43026700202;EP300:2.42204088476;ATF4:2.30299643723;ATF5_CREB3:2.30063116651;NFE2L1:2.18351912136;ATF6:2.16998033433;RUNX1..3:1.96582741093;FOXN1:1.93005147584;HSF1,2:1.87487964078;CREB1:1.86743276206;JUN:1.71762497471;ATF2:1.59887352137;TGIF1:1.54147464543;NFATC1..3:1.45861019126;ELF1,2,4:1.45519624723;ALX4:1.32733870701;HIF1A:1.28042868529;CDX1,2,4:1.27045570132;PDX1:1.23989793587;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.20438362811;MAFB:1.10730731647;PAX8:1.06146334655;XBP1:0.879268800458;GLI1..3:0.811849149249;PAX3,7:0.706019063101;ZBTB16:0.65421279013;PPARG:0.632979141294;RXRA_VDR{dimer}:0.597746605104;TLX2:0.491696046027;SRF:0.480293920921;BPTF:0.378394826692;HOX{A5,B5}:0.362230512703;NR6A1:0.359261286569;TFCP2:0.2706289965;FOXD3:0.254445309164;PRDM1:0.240655049559;HMGA1,2:0.213372334137;HMX1:0.173184400016;ESRRA:0.152242075381;AHR_ARNT_ARNT2:0.132044413194;TBP:0.131300247182;SMAD1..7,9:0.10401074364;HBP1_HMGB_SSRP1_UBTF:0.0903711470538;GATA4:0.0609816963918;NANOG:0.0308285279103;SPZ1:-0.0340430392294;IKZF1:-0.0537015508883;ESR1:-0.119762955786;EN1,2:-0.129168588362;HOXA9_MEIS1:-0.147854964283;MEF2{A,B,C,D}:-0.158855206145;PITX1..3:-0.189901984093;PAX4:-0.236961034429;RBPJ:-0.285108842133;EGR1..3:-0.2898250058;FOXO1,3,4:-0.293444446195;FOXM1:-0.301112159967;IKZF2:-0.303323878275;VSX1,2:-0.334305959497;RFX2..5_RFXANK_RFXAP:-0.349683894424;HES1:-0.363505246943;FOX{D1,D2}:-0.384115098271;MYB:-0.431102294032;OCT4_SOX2{dimer}:-0.469608004519;POU2F1..3:-0.62755594224;NKX6-1,2:-0.667491822794;FOXL1:-0.700410062435;MZF1:-0.712075369692;RORA:-0.746490856563;FOXP1:-0.825871659475;HOX{A6,A7,B6,B7}:-0.829429625931;FOX{F1,F2,J1}:-0.858882804135;TFAP4:-0.859939776446;POU5F1:-0.889720753217;DBP:-0.912120662464;RXR{A,B,G}:-0.947159205991;ALX1:-0.950573598829;PAX1,9:-0.950948549814;NHLH1,2:-0.955030893442;TAL1_TCF{3,4,12}:-1.00253623467;SOX2:-1.01374005283;HNF4A_NR2F1,2:-1.01398211579;REST:-1.0313278966;PAX6:-1.04660947468;HNF1A:-1.08437701441;MED-1{core}:-1.12999793335;NKX2-2,8:-1.13289677107;MYFfamily:-1.14624260247;ZNF238:-1.19868210379;PRRX1,2:-1.21835112174;POU6F1:-1.22304536787;MTE{core}:-1.23061295819;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.25476172027;NKX3-2:-1.30726290505;NR3C1:-1.32733655755;NKX3-1:-1.39151050107;SOX5:-1.40585256815;GCM1,2:-1.41576984373;GZF1:-1.45047621508;RREB1:-1.4516845404;GATA6:-1.50029763425;ZBTB6:-1.50462194843;TFAP2B:-1.51169339269;PATZ1:-1.52066178947;CUX2:-1.547762325;MTF1:-1.55945446376;NFIX:-1.59383003143;ZFP161:-1.60716535541;NKX2-1,4:-1.61257058626;NKX2-3_NKX2-5:-1.62305034824;TEAD1:-1.63264209622;XCPE1{core}:-1.64580942982;E2F1..5:-1.66828898113;MYOD1:-1.67059816496;GTF2A1,2:-1.67177462065;TFDP1:-1.68599113809;CDC5L:-1.70862361806;POU3F1..4:-1.73333201266;GTF2I:-1.74644792137;BREu{core}:-1.74788534426;ZEB1:-1.75609424618;TP53:-1.7768962541;RFX1:-1.78668197341;ZNF148:-1.78987490168;TLX1..3_NFIC{dimer}:-1.79771632203;SP1:-1.81194192504;MAZ:-1.81292007886;POU1F1:-1.81480209425;T:-1.8242021726;MYBL2:-1.8642772328;ONECUT1,2:-1.86710117046;FOXA2:-1.8842027459;SOX{8,9,10}:-1.88639226273;ZNF384:-1.91273898361;SNAI1..3:-1.91499472415;UFEwm:-1.98441838156;TBX4,5:-1.99062227175;GFI1B:-2.03147721014;TFAP2{A,C}:-2.03876623886;CRX:-2.052388287;HIC1:-2.05243308785;ELK1,4_GABP{A,B1}:-2.07874640024;KLF4:-2.14460350378;ADNP_IRX_SIX_ZHX:-2.14592994191;HAND1,2:-2.21748932401;TOPORS:-2.24570760513;ZIC1..3:-2.30588304011;bHLH_family:-2.33877411188;EBF1:-2.38805943486;AIRE:-2.39217826611;FOXQ1:-2.40082984548;LMO2:-2.41217477326;TEF:-2.41474953284;NFY{A,B,C}:-2.41949473486;HOX{A4,D4}:-2.42485636677;EVI1:-2.48451690127;ZNF423:-2.50825688284;NR5A1,2:-2.5316145125;SOX17:-2.81051809799;PBX1:-2.8237568587;PAX5:-2.84440624067;FOX{I1,J2}:-2.84560689051;NRF1:-2.90392398663;GFI1:-2.92367719122;YY1:-2.95224115534;ARID5B:-2.95583080236;AR:-3.03204708775;LHX3,4:-3.47895277897;ZNF143:-3.56623490009;LEF1_TCF7_TCF7L1,2:-3.56988756597
|top_motifs=STAT2,4,6:5.6873180702;STAT5{A,B}:5.0760598675;NFE2:4.65898972643;FOSL2:4.51699774424;IRF7:4.37666428933;STAT1,3:4.35731913977;NFE2L2:4.30464233454;CEBPA,B_DDIT3:4.25343635409;IRF1,2:4.04942952684;BACH2:4.04449793903;FOS_FOS{B,L1}_JUN{B,D}:3.93877530274;PAX2:3.81814875974;HLF:3.75394877891;SPIB:3.15935565633;NANOG{mouse}:2.91180948729;SREBF1,2:2.88191990142;SPI1:2.87026886345;ETS1,2:2.6609524874;NFKB1_REL_RELA:2.6520852099;NFIL3:2.61402352228;NR1H4:2.59670030543;FOXP3:2.45582888747;DMAP1_NCOR{1,2}_SMARC:2.43026700202;EP300:2.42204088476;ATF4:2.30299643723;ATF5_CREB3:2.30063116651;NFE2L1:2.18351912136;ATF6:2.16998033433;RUNX1..3:1.96582741093;FOXN1:1.93005147584;HSF1,2:1.87487964078;CREB1:1.86743276206;JUN:1.71762497471;ATF2:1.59887352137;TGIF1:1.54147464543;NFATC1..3:1.45861019126;ELF1,2,4:1.45519624723;ALX4:1.32733870701;HIF1A:1.28042868529;CDX1,2,4:1.27045570132;PDX1:1.23989793587;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.20438362811;MAFB:1.10730731647;PAX8:1.06146334655;XBP1:0.879268800458;GLI1..3:0.811849149249;PAX3,7:0.706019063101;ZBTB16:0.65421279013;PPARG:0.632979141294;RXRA_VDR{dimer}:0.597746605104;TLX2:0.491696046027;SRF:0.480293920921;BPTF:0.378394826692;HOX{A5,B5}:0.362230512703;NR6A1:0.359261286569;TFCP2:0.2706289965;FOXD3:0.254445309164;PRDM1:0.240655049559;HMGA1,2:0.213372334137;HMX1:0.173184400016;ESRRA:0.152242075381;AHR_ARNT_ARNT2:0.132044413194;TBP:0.131300247182;SMAD1..7,9:0.10401074364;HBP1_HMGB_SSRP1_UBTF:0.0903711470538;GATA4:0.0609816963918;NANOG:0.0308285279103;SPZ1:-0.0340430392294;IKZF1:-0.0537015508883;ESR1:-0.119762955786;EN1,2:-0.129168588362;HOXA9_MEIS1:-0.147854964283;MEF2{A,B,C,D}:-0.158855206145;PITX1..3:-0.189901984093;PAX4:-0.236961034429;RBPJ:-0.285108842133;EGR1..3:-0.2898250058;FOXO1,3,4:-0.293444446195;FOXM1:-0.301112159967;IKZF2:-0.303323878275;VSX1,2:-0.334305959497;RFX2..5_RFXANK_RFXAP:-0.349683894424;HES1:-0.363505246943;FOX{D1,D2}:-0.384115098271;MYB:-0.431102294032;OCT4_SOX2{dimer}:-0.469608004519;POU2F1..3:-0.62755594224;NKX6-1,2:-0.667491822794;FOXL1:-0.700410062435;MZF1:-0.712075369692;RORA:-0.746490856563;FOXP1:-0.825871659475;HOX{A6,A7,B6,B7}:-0.829429625931;FOX{F1,F2,J1}:-0.858882804135;TFAP4:-0.859939776446;POU5F1:-0.889720753217;DBP:-0.912120662464;RXR{A,B,G}:-0.947159205991;ALX1:-0.950573598829;PAX1,9:-0.950948549814;NHLH1,2:-0.955030893442;TAL1_TCF{3,4,12}:-1.00253623467;SOX2:-1.01374005283;HNF4A_NR2F1,2:-1.01398211579;REST:-1.0313278966;PAX6:-1.04660947468;HNF1A:-1.08437701441;MED-1{core}:-1.12999793335;NKX2-2,8:-1.13289677107;MYFfamily:-1.14624260247;ZNF238:-1.19868210379;PRRX1,2:-1.21835112174;POU6F1:-1.22304536787;MTE{core}:-1.23061295819;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.25476172027;NKX3-2:-1.30726290505;NR3C1:-1.32733655755;NKX3-1:-1.39151050107;SOX5:-1.40585256815;GCM1,2:-1.41576984373;GZF1:-1.45047621508;RREB1:-1.4516845404;GATA6:-1.50029763425;ZBTB6:-1.50462194843;TFAP2B:-1.51169339269;PATZ1:-1.52066178947;CUX2:-1.547762325;MTF1:-1.55945446376;NFIX:-1.59383003143;ZFP161:-1.60716535541;NKX2-1,4:-1.61257058626;NKX2-3_NKX2-5:-1.62305034824;TEAD1:-1.63264209622;XCPE1{core}:-1.64580942982;E2F1..5:-1.66828898113;MYOD1:-1.67059816496;GTF2A1,2:-1.67177462065;TFDP1:-1.68599113809;CDC5L:-1.70862361806;POU3F1..4:-1.73333201266;GTF2I:-1.74644792137;BREu{core}:-1.74788534426;ZEB1:-1.75609424618;TP53:-1.7768962541;RFX1:-1.78668197341;ZNF148:-1.78987490168;TLX1..3_NFIC{dimer}:-1.79771632203;SP1:-1.81194192504;MAZ:-1.81292007886;POU1F1:-1.81480209425;T:-1.8242021726;MYBL2:-1.8642772328;ONECUT1,2:-1.86710117046;FOXA2:-1.8842027459;SOX{8,9,10}:-1.88639226273;ZNF384:-1.91273898361;SNAI1..3:-1.91499472415;UFEwm:-1.98441838156;TBX4,5:-1.99062227175;GFI1B:-2.03147721014;TFAP2{A,C}:-2.03876623886;CRX:-2.052388287;HIC1:-2.05243308785;ELK1,4_GABP{A,B1}:-2.07874640024;KLF4:-2.14460350378;ADNP_IRX_SIX_ZHX:-2.14592994191;HAND1,2:-2.21748932401;TOPORS:-2.24570760513;ZIC1..3:-2.30588304011;bHLH_family:-2.33877411188;EBF1:-2.38805943486;AIRE:-2.39217826611;FOXQ1:-2.40082984548;LMO2:-2.41217477326;TEF:-2.41474953284;NFY{A,B,C}:-2.41949473486;HOX{A4,D4}:-2.42485636677;EVI1:-2.48451690127;ZNF423:-2.50825688284;NR5A1,2:-2.5316145125;SOX17:-2.81051809799;PBX1:-2.8237568587;PAX5:-2.84440624067;FOX{I1,J2}:-2.84560689051;NRF1:-2.90392398663;GFI1:-2.92367719122;YY1:-2.95224115534;ARID5B:-2.95583080236;AR:-3.03204708775;LHX3,4:-3.47895277897;ZNF143:-3.56623490009;LEF1_TCF7_TCF7L1,2:-3.56988756597
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11870-125B7;search_select_hide=table117:FF:11870-125B7
}}
}}

Latest revision as of 18:25, 4 June 2020

Name:CD14+ monocytes - treated with BCG, donor2
Species:Human (Homo sapiens)
Library ID:CNhs13475
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexmale
age51
cell typemonocyte
cell lineNA
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberD4-1
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004743
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13475 CAGE DRX008139 DRR009011
Accession ID Hg19

Library idBAMCTSS
CNhs13475 DRZ000436 DRZ001821
Accession ID Hg38

Library idBAMCTSS
CNhs13475 DRZ011786 DRZ013171
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.552
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0631
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.661
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.485
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.099
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.099
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.248
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.099
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.768
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.152
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.511
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.306
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0.248
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.404
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.418
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0834
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.854
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.18
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.306
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.553
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.306
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.354
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.099
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0.484
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.746
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0.661
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.787
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.484
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.623
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.939
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.486
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.18
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.531
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.661
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0.404
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.358
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.703
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.806
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.306
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.749
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.306
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.099
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.552
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.099
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.403
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.248
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.822
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0.869
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.181
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.139
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.18
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.248
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13475

Jaspar motifP-value
MA0002.26.93552e-8
MA0003.10.558
MA0004.10.331
MA0006.10.696
MA0007.10.627
MA0009.10.363
MA0014.10.904
MA0017.10.0833
MA0018.20.171
MA0019.10.657
MA0024.10.00242
MA0025.10.0101
MA0027.10.821
MA0028.10.14
MA0029.10.227
MA0030.10.127
MA0031.10.286
MA0035.20.206
MA0038.10.211
MA0039.20.687
MA0040.10.329
MA0041.10.87
MA0042.10.461
MA0043.12.81541e-6
MA0046.10.0287
MA0047.20.714
MA0048.10.703
MA0050.12.46403e-19
MA0051.11.44873e-11
MA0052.10.037
MA0055.10.792
MA0057.10.616
MA0058.10.136
MA0059.10.208
MA0060.11.33644e-9
MA0061.13.4108e-9
MA0062.20.521
MA0065.20.0122
MA0066.10.0373
MA0067.13.29975e-6
MA0068.10.234
MA0069.10.639
MA0070.10.0194
MA0071.10.363
MA0072.10.789
MA0073.10.477
MA0074.10.154
MA0076.10.17
MA0077.10.225
MA0078.10.484
MA0079.20.224
MA0080.21.12398e-12
MA0081.15.41148e-4
MA0083.10.507
MA0084.10.754
MA0087.10.995
MA0088.10.647
MA0090.10.423
MA0091.10.573
MA0092.10.261
MA0093.10.381
MA0099.21.02084e-43
MA0100.10.718
MA0101.12.86246e-9
MA0102.23.3324e-8
MA0103.10.172
MA0104.20.382
MA0105.11.29928e-12
MA0106.10.996
MA0107.13.60182e-11
MA0108.20.198
MA0111.10.611
MA0112.24.81062e-5
MA0113.10.702
MA0114.10.2
MA0115.10.845
MA0116.13.32092e-4
MA0117.10.0814
MA0119.10.221
MA0122.10.721
MA0124.10.522
MA0125.10.286
MA0131.10.345
MA0135.10.466
MA0136.14.69495e-13
MA0137.24.66212e-12
MA0138.20.513
MA0139.10.827
MA0140.10.23
MA0141.10.127
MA0142.10.507
MA0143.10.967
MA0144.11.89902e-5
MA0145.10.322
MA0146.10.284
MA0147.10.501
MA0148.10.819
MA0149.10.188
MA0150.11.73344e-21
MA0152.10.791
MA0153.10.00345
MA0154.10.00104
MA0155.10.901
MA0156.11.24001e-8
MA0157.10.999
MA0159.10.0234
MA0160.10.038
MA0162.10.931
MA0163.11.70711e-8
MA0164.10.577
MA0258.10.00427
MA0259.10.818



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13475

Novel motifP-value
10.0831
100.0227
1000.989
1010.816
1020.803
1030.274
1040.533
1050.152
1067.61515e-4
1070.21
1080.87
1090.248
110.164
1100.138
1110.0371
1120.38
1130.561
1140.0171
1150.231
1160.873
1170.0723
1180.203
1190.141
120.347
1200.783
1210.524
1220.556
1230.218
1240.795
1250.387
1260.267
1270.439
1280.0377
1290.41
130.108
1300.17
1310.771
1320.0624
1330.563
1340.689
1350.633
1360.917
1370.0313
1380.213
1390.0627
140.439
1400.332
1410.226
1420.0571
1430.0239
1440.655
1450.294
1460.752
1470.595
1480.013
1490.876
150.166
1500.416
1510.392
1520.243
1530.819
1540.504
1550.911
1560.499
1570.613
1580.0386
1590.504
160.3
1600.361
1610.456
1620.21
1630.0778
1640.114
1650.137
1660.691
1670.147
1680.219
1690.00733
170.192
180.125
190.453
20.657
200.26
210.567
220.31
230.04
240.322
250.409
260.066
270.762
280.487
290.254
30.11
300.539
310.789
320.803
330.284
340.646
350.183
360.0816
370.0714
380.394
390.813
40.921
400.223
410.016
420.369
430.0308
440.898
450.791
460.183
470.528
480.476
490.133
50.286
500.994
510.419
520.377
530.497
540.371
550.403
560.675
570.778
580.145
590.218
60.877
600.0463
610.672
620.0754
630.488
640.439
650.229
660.281
670.547
680.867
690.449
70.265
700.0381
710.0379
720.164
730.171
740.11
750.131
760.192
770.511
780.111
790.401
80.357
800.215
810.331
820.189
830.0255
840.226
850.0206
860.052
870.658
880.619
890.233
90.362
900.0926
910.296
920.273
930.387
940.0802
950.363
960.45
970.66
980.101
990.0761



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13475


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000628 (Bacillus Calmette-Guerin treatment sample)
0011103 (human CD14-positive monocytes - treated with BCG sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11870-125B7&oldid=4576798"