FF:11871-125B8: Difference between revisions

Latest revision as of 18:25, 4 June 2020

Name:	CD14+ monocytes - treated with IFN + N-hexane, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13476
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	male
age	51
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D4-2
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005047

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13476		CAGE		DRX008151		DRR009023

Accession ID Hg19

Library id		BAM		CTSS
CNhs13476		DRZ000448		DRZ001833

Accession ID Hg38

Library id		BAM		CTSS
CNhs13476		DRZ011798		DRZ013183

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.204
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0335
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.601
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.47
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.079
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0566
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.215
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.762
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.146
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.295
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.146
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0.146
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.392
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.389
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0775
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.923
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.146
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.204
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.298
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.146
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.161
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.38
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.777
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.579
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.836
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.476
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.504
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.902
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.349
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.079
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.522
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.0774
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.558
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.3
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.3
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.734
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.632
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.146
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.791
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.372
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.079
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.601
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.079
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.414
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.079
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.868
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.662
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.204
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.146
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.146
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.255
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13476

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.75495e-6
MA0003.1	MA0003.1	0.389
MA0004.1	MA0004.1	0.574
MA0006.1	MA0006.1	0.999
MA0007.1	MA0007.1	0.697
MA0009.1	MA0009.1	0.275
MA0014.1	MA0014.1	0.981
MA0017.1	MA0017.1	0.0339
MA0018.2	MA0018.2	0.445
MA0019.1	MA0019.1	0.517
MA0024.1	MA0024.1	0.00165
MA0025.1	MA0025.1	0.0965
MA0027.1	MA0027.1	0.842
MA0028.1	MA0028.1	0.112
MA0029.1	MA0029.1	0.306
MA0030.1	MA0030.1	0.217
MA0031.1	MA0031.1	0.499
MA0035.2	MA0035.2	0.213
MA0038.1	MA0038.1	0.0289
MA0039.2	MA0039.2	0.71
MA0040.1	MA0040.1	0.295
MA0041.1	MA0041.1	0.192
MA0042.1	MA0042.1	0.436
MA0043.1	MA0043.1	6.01875e-4
MA0046.1	MA0046.1	0.0877
MA0047.2	MA0047.2	0.698
MA0048.1	MA0048.1	0.753
MA0050.1	MA0050.1	9.22723e-25
MA0051.1	MA0051.1	2.16002e-15
MA0052.1	MA0052.1	0.648
MA0055.1	MA0055.1	0.667
MA0057.1	MA0057.1	0.82
MA0058.1	MA0058.1	0.346
MA0059.1	MA0059.1	0.548
MA0060.1	MA0060.1	4.97577e-12
MA0061.1	MA0061.1	5.14369e-5
MA0062.2	MA0062.2	0.519
MA0065.2	MA0065.2	0.011
MA0066.1	MA0066.1	0.0696
MA0067.1	MA0067.1	8.69844e-5
MA0068.1	MA0068.1	0.173
MA0069.1	MA0069.1	0.579
MA0070.1	MA0070.1	0.00722
MA0071.1	MA0071.1	0.366
MA0072.1	MA0072.1	0.812
MA0073.1	MA0073.1	0.444
MA0074.1	MA0074.1	0.262
MA0076.1	MA0076.1	0.118
MA0077.1	MA0077.1	0.159
MA0078.1	MA0078.1	0.485
MA0079.2	MA0079.2	0.536
MA0080.2	MA0080.2	1.10409e-14
MA0081.1	MA0081.1	4.65833e-4
MA0083.1	MA0083.1	0.739
MA0084.1	MA0084.1	0.734
MA0087.1	MA0087.1	0.783
MA0088.1	MA0088.1	0.525
MA0090.1	MA0090.1	0.163
MA0091.1	MA0091.1	0.341
MA0092.1	MA0092.1	0.189
MA0093.1	MA0093.1	0.633
MA0099.2	MA0099.2	1.82231e-32
MA0100.1	MA0100.1	0.656
MA0101.1	MA0101.1	0.00233
MA0102.2	MA0102.2	2.60918e-7
MA0103.1	MA0103.1	0.439
MA0104.2	MA0104.2	0.991
MA0105.1	MA0105.1	8.29836e-8
MA0106.1	MA0106.1	0.874
MA0107.1	MA0107.1	3.76798e-4
MA0108.2	MA0108.2	0.00605
MA0111.1	MA0111.1	0.455
MA0112.2	MA0112.2	1.37231e-4
MA0113.1	MA0113.1	0.525
MA0114.1	MA0114.1	0.193
MA0115.1	MA0115.1	0.894
MA0116.1	MA0116.1	2.56478e-4
MA0117.1	MA0117.1	0.238
MA0119.1	MA0119.1	0.333
MA0122.1	MA0122.1	0.859
MA0124.1	MA0124.1	0.827
MA0125.1	MA0125.1	0.426
MA0131.1	MA0131.1	0.458
MA0135.1	MA0135.1	0.382
MA0136.1	MA0136.1	1.4039e-13
MA0137.2	MA0137.2	2.57773e-15
MA0138.2	MA0138.2	0.687
MA0139.1	MA0139.1	0.821
MA0140.1	MA0140.1	0.189
MA0141.1	MA0141.1	0.107
MA0142.1	MA0142.1	0.434
MA0143.1	MA0143.1	0.676
MA0144.1	MA0144.1	2.01577e-6
MA0145.1	MA0145.1	0.237
MA0146.1	MA0146.1	0.1
MA0147.1	MA0147.1	0.952
MA0148.1	MA0148.1	0.979
MA0149.1	MA0149.1	0.277
MA0150.1	MA0150.1	6.18938e-17
MA0152.1	MA0152.1	0.825
MA0153.1	MA0153.1	0.0164
MA0154.1	MA0154.1	0.00317
MA0155.1	MA0155.1	0.919
MA0156.1	MA0156.1	1.5577e-8
MA0157.1	MA0157.1	0.701
MA0159.1	MA0159.1	0.022
MA0160.1	MA0160.1	0.0295
MA0162.1	MA0162.1	0.956
MA0163.1	MA0163.1	2.17649e-7
MA0164.1	MA0164.1	0.595
MA0258.1	MA0258.1	0.00242
MA0259.1	MA0259.1	0.518

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13476

Novel motif	Logo	P-value
1	1	0.115
10	10	0.0188
100	100	0.837
101	101	0.868
102	102	0.508
103	103	0.346
104	104	0.665
105	105	0.341
106	106	4.2523e-4
107	107	0.164
108	108	0.969
109	109	0.228
11	11	0.142
110	110	0.185
111	111	0.0255
112	112	0.253
113	113	0.55
114	114	0.0114
115	115	0.305
116	116	0.785
117	117	0.0655
118	118	0.185
119	119	0.131
12	12	0.471
120	120	0.951
121	121	0.549
122	122	0.608
123	123	0.0647
124	124	0.915
125	125	0.395
126	126	0.347
127	127	0.342
128	128	0.0174
129	129	0.506
13	13	0.157
130	130	0.131
131	131	0.584
132	132	0.0727
133	133	0.796
134	134	0.614
135	135	0.43
136	136	0.789
137	137	0.0155
138	138	0.133
139	139	0.0647
14	14	0.354
140	140	0.297
141	141	0.221
142	142	0.2
143	143	0.0754
144	144	0.711
145	145	0.305
146	146	0.584
147	147	0.284
148	148	0.0285
149	149	0.703
15	15	0.132
150	150	0.43
151	151	0.266
152	152	0.0973
153	153	0.647
154	154	0.363
155	155	0.705
156	156	0.575
157	157	0.534
158	158	0.0676
159	159	0.706
16	16	0.258
160	160	0.495
161	161	0.466
162	162	0.282
163	163	0.169
164	164	0.154
165	165	0.0641
166	166	0.679
167	167	0.148
168	168	0.422
169	169	0.00853
17	17	0.201
18	18	0.196
19	19	0.298
2	2	0.951
20	20	0.323
21	21	0.315
22	22	0.265
23	23	0.0372
24	24	0.199
25	25	0.388
26	26	0.0426
27	27	0.92
28	28	0.449
29	29	0.253
3	3	0.0574
30	30	0.573
31	31	0.823
32	32	0.929
33	33	0.371
34	34	0.487
35	35	0.212
36	36	0.138
37	37	0.0719
38	38	0.43
39	39	0.809
4	4	0.956
40	40	0.276
41	41	0.0414
42	42	0.314
43	43	0.042
44	44	0.605
45	45	0.788
46	46	0.14
47	47	0.45
48	48	0.392
49	49	0.116
5	5	0.232
50	50	0.903
51	51	0.384
52	52	0.236
53	53	0.281
54	54	0.261
55	55	0.301
56	56	0.633
57	57	0.68
58	58	0.0938
59	59	0.186
6	6	0.772
60	60	0.0271
61	61	0.544
62	62	0.0389
63	63	0.382
64	64	0.418
65	65	0.266
66	66	0.243
67	67	0.599
68	68	0.751
69	69	0.723
7	7	0.285
70	70	0.0202
71	71	0.0457
72	72	0.141
73	73	0.116
74	74	0.105
75	75	0.106
76	76	0.275
77	77	0.391
78	78	0.0917
79	79	0.0288
8	8	0.399
80	80	0.219
81	81	0.329
82	82	0.0937
83	83	0.311
84	84	0.421
85	85	0.0104
86	86	0.0418
87	87	0.65
88	88	0.48
89	89	0.384
9	9	0.354
90	90	0.0311
91	91	0.257
92	92	0.173
93	93	0.441
94	94	0.0465
95	95	0.387
96	96	0.394
97	97	0.838
98	98	0.0838
99	99	0.142

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13476

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011443 CD14-positive monocytes - treated with IFN + N-hexane sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000629 (IFN and N-hexane treatment sample)
0011443 (CD14-positive monocytes - treated with IFN + N-hexane sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005047
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008151;DRR009023;DRZ000448;DRZ001833;DRZ011798;DRZ013183
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000350,FF:0000629,FF:0011443
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.31!2019.77!PLEK;;chr16:85932760..85932775,+!p1@IRF8!3.00!1004.10!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.71!512.62!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.61!405.51!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.30!199.86!TFEC;;chr6:36355431..36355466,-!p1@ETV7!2.17!147.40!ETV7;;chr10:35484053..35484076,+!p1@CREM!2.16!343.28!CREM;;chr11:47399947..47399961,-!p3@SPI1!2.14!135.64!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!2.10!230.18!RUNX3;;chr7:128577972..128578047,+!p1@IRF5!2.09!186.90!IRF5;;chr21:34442439..34442455,+!p1@OLIG1!2.06!114.29!OLIG1;;chr10:64576105..64576133,-!p1@EGR2!2.05!223.20!EGR2;;chr6:106534192..106534224,+!p1@PRDM1!2.00!265.69!PRDM1;;chr11:47400062..47400077,-!p2@SPI1!1.97!91.75!SPI1;;chr2:70142232..70142251,+!p1@MXD1!1.96!483.90!MXD1;;chr11:64764435..64764449,-!p1@BATF2!1.96!121.67!BATF2;;chr11:47399996..47400014,-!p4@SPI1!1.92!82.18!SPI1;;chr5:131826457..131826514,-!p1@IRF1!1.90!2870.08!IRF1;;chr20:39317868..39317884,-!p1@MAFB!1.89!844.73!MAFB;;chr11:615942..615957,-!p1@IRF7!1.89!688.15!IRF7;;chr21:36260295..36260310,-!p3@RUNX1!1.88!117.88!RUNX1;;chr2:231084639..231084654,-!p2@SP110!1.87!118.28!SP110;;chr19:33793430..33793447,-!p1@CEBPA!1.82!260.30!CEBPA;;chr6:106534230..106534254,+!p2@PRDM1!1.81!155.98!PRDM1;;chr19:50432132..50432217,+!p2@ATF5!1.80!73.00!ATF5;;chr12:54778351..54778378,-!p6@ZNF385A!1.80!62.03!ZNF385A;;chr16:79634624..79634642,-!p1@MAF!1.78!225.00!MAF;;chr1:221052776..221052799,+!p1@HLX!1.76!98.93!HLX;;chr11:47400032..47400043,-!p5@SPI1!1.73!52.46!SPI1;;chr16:31885093..31885165,+!p1@ZNF267!1.64!620.93!ZNF267;;chr21:30671690..30671762,+!p2@BACH1!1.64!140.42!BACH1;;chr17:45810594..45810608,+!p1@TBX21!1.64!42.88!TBX21;;chr2:97202480..97202499,+!p1@ARID5A!1.63!402.12!ARID5A;;chr14:75988771..75988826,+!p1@BATF!1.62!53.66!BATF;;chr1:158979872..158979898,+!p3@IFI16!1.61!119.08!IFI16;;chr1:25256439..25256476,-!p3@RUNX3!1.61!39.49!RUNX3;;chr6:391743..391759,+!p1@IRF4!1.60!38.90!IRF4;;chr2:145277640..145277771,-!p1@ZEB2!1.59!486.49!ZEB2;;chr11:615570..615721,-!p2@IRF7!1.58!71.61!IRF7;;chr14:75988831..75988847,+!p2@BATF!1.58!37.10!BATF;;chr2:68592394..68592405,+!p2@PLEK!1.56!35.70!PLEK;;chr1:158985493..158985535,+!p4@IFI16!1.55!51.86!IFI16;;chr16:79634595..79634620,-!p2@MAF!1.54!59.64!MAF;;chr1:221052733..221052749,+!p2@HLX!1.54!43.08!HLX;;chr4:185395590..185395627,-!p3@IRF2!1.53!40.49!IRF2;;chr12:11802753..11802834,+!p2@ETV6!1.51!147.60!ETV6;;chr7:50344289..50344323,+!p1@IKZF1!1.51!31.32!IKZF1;;chr10:51572408..51572454,+!p3@NCOA4!1.50!173.73!NCOA4;;chr10:51572339..51572376,+!p4@NCOA4!1.50!67.42!NCOA4;;chr6:144385698..144385742,-!p2@PLAGL1!1.50!37.10!PLAGL1;;chr21:36421535..36421610,-!p2@RUNX1!1.47!99.73!RUNX1;;chr12:48298765..48298783,-!p2@VDR!1.47!57.84!VDR;;chr10:31288398..31288455,-!p2@ZNF438!1.47!33.31!ZNF438;;chrX:129244454..129244488,-!p1@ELF4!1.46!193.48!ELF4;;chr11:47400045..47400060,-!p6@SPI1!1.46!28.12!SPI1;;chr21:30671235..30671253,+!p1@BACH1!1.44!325.92!BACH1;;chr2:145275162..145275202,-!p2@ZEB2!1.44!149.80!ZEB2;;chr4:185395633..185395651,-!p2@IRF2!1.44!42.29!IRF2;;chr2:231084820..231084836,-!p5@SP110!1.44!30.72!SP110;;chr7:150946376..150946389,-!p6@SMARCD3!1.44!26.53!SMARCD3;;chr9:110250697..110250738,-!p2@KLF4!1.43!30.12!KLF4;;chrX:129244430..129244442,-!p5@ELF4!1.43!26.13!ELF4;;chr12:56415246..56415286,+!p2@IKZF4!1.43!25.73!IKZF4;;chr1:158979922..158979933,+!p13@IFI16!1.38!22.74!IFI16;;chr11:47399920..47399931,-!p7@SPI1!1.37!22.54!SPI1;;chr1:212782094..212782109,+!p1@ATF3!1.36!573.46!ATF3;;chr18:3449720..3449749,+!p2@TGIF1!1.36!45.48!TGIF1;;chr10:35484090..35484104,+!p6@CREM!1.36!21.74!CREM;;chr13:41593425..41593480,-!p1@ELF1!1.34!128.85!ELF1;;chr12:48298785..48298828,-!p1@VDR!1.34!109.11!VDR;;chr12:72056749..72056767,+!p6@THAP2!1.34!23.34!THAP2;;chr21:30672433..30672464,+!p6@BACH1!1.34!20.94!BACH1;;chr19:45251395..45251432,+!p8@BCL3!1.34!20.74!BCL3;;chr6:106535598..106535637,+!p7@PRDM1!1.33!20.54!PRDM1;;chr19:45971246..45971265,+!p1@FOSB!1.32!356.04!FOSB;;chr11:65430554..65430579,-!p3@RELA!1.31!48.67!RELA;;chr14:35872453..35872485,-!p2@NFKBIA!1.31!47.67!NFKBIA;;chr10:31288370..31288393,-!p3@ZNF438!1.31!19.55!ZNF438;;chr9:110252035..110252057,-!p1@KLF4!1.30!291.42!KLF4;;chr2:231090471..231090504,+!p2@SP140!1.30!19.15!SP140;;chr2:231090433..231090469,+!p1@SP140!1.29!18.55!SP140;;chr3:187455680..187455700,-!p4@BCL6!1.28!17.95!BCL6;;chr21:34398234..34398250,+!p1@OLIG2!1.28!17.95!OLIG2;;chr7:28725740..28725778,+!p1@CREB5!1.27!153.39!CREB5;;chr19:45252008..45252024,+!p2@BCL3!1.27!56.85!BCL3;;chr19:45250948..45250998,+!p3@BCL3!1.27!43.68!BCL3;;chr21:36260343..36260402,-!p6@RUNX1!1.27!28.12!RUNX1;;chr22:38597987..38598021,+!p2@MAFF!1.25!101.13!MAFF;;chr12:72056773..72056796,+!p3@THAP2!1.25!21.94!THAP2;;chr17:38497662..38497713,+!p4@RARA!1.25!19.35!RARA;;chr7:149470641..149470694,-!p1@ZNF467!1.24!73.20!ZNF467;;chr2:231084659..231084721,-!p1@SP110!1.23!365.82!SP110;;chr16:3285119..3285133,-!p2@ZNF200!1.23!32.11!ZNF200;;chr12:72056800..72056834,+!p1@THAP2!1.23!21.74!THAP2;;chr12:54694758..54694805,-!p1@NFE2!1.22!18.95!NFE2;;chr21:34442540..34442560,+!p2@OLIG1!1.22!15.76!OLIG1;;chr3:187455486..187455504,-!p6@BCL6!1.22!15.56!BCL6;;chr4:106068026..106068084,+!p1@TET2!1.21!134.24!TET2;;chr16:89787973..89788001,+!p3@ZNF276!1.21!29.12!ZNF276;;chr1:221053049..221053075,+!p3@HLX!1.21!26.13!HLX;;chr21:36260325..36260341,-!p14@RUNX1!1.21!15.36!RUNX1;;chr3:187455634..187455651,-!p7@BCL6!1.21!15.36!BCL6;;chr21:30672734..30672748,+!p11@BACH1!1.20!14.76!BACH1;;chr11:65430535..65430549,-!p4@RELA!1.19!16.95!RELA;;chr20:48807351..48807384,+!p1@CEBPB!1.18!1425.57!CEBPB;;chr1:158979792..158979814,+!p2@IFI16!1.18!133.84!IFI16;;chr2:70314240..70314256,+!p4@PCBP1!1.18!29.32!PCBP1;;chr12:56415287..56415300,+!p5@IKZF4!1.18!13.96!IKZF4;;chr1:8484007..8484061,-!p13@RERE!1.17!17.55!RERE;;chr14:74226747..74226779,-!p3@C14orf43!1.16!75.00!C14orf43;;chr2:238600933..238600985,+!p3@LRRFIP1!1.16!72.80!LRRFIP1;;chr3:12329397..12329433,+!p2@PPARG!1.16!30.72!PPARG;;chr19:19496539..19496576,+!p8@GATAD2A!1.16!23.54!GATAD2A;;chr1:221052840..221052875,+!p4@HLX!1.16!15.96!HLX;;chrX:153305787..153305807,-!p3@MECP2!1.16!13.56!MECP2;;chr7:115670792..115670797,-!p2@TFEC!1.16!13.56!TFEC;;chr4:103422499..103422632,+!p1@NFKB1!1.15!269.87!NFKB1;;chr2:231280954..231280965,+!p2@SP100!1.15!24.33!SP100;;chr2:145277882..145277967,-!p3@ZEB2!1.15!22.74!ZEB2;;chr2:238600998..238601013,+!p5@LRRFIP1!1.15!12.97!LRRFIP1;;chr7:17338266..17338282,+!p1@AHR!1.14!138.43!AHR;;chr12:96588279..96588299,+!p4@ELK3!1.14!61.04!ELK3;;chr6:126240463..126240489,+!p6@NCOA7!1.14!14.56!NCOA7;;chr10:35484804..35484902,+!p2@CREM!1.13!47.87!CREM;;chr12:54785074..54785122,-!p2@ZNF385A!1.13!19.15!ZNF385A;;chr16:79634581..79634592,-!p4@MAF!1.12!12.17!MAF;;chr3:187463179..187463201,-!p2@BCL6!1.11!49.47!BCL6;;chr1:221052994..221053008,+!p6@HLX!1.11!14.16!HLX;;chr3:107318229..107318239,+!p17@BBX!1.11!11.97!BBX;;chr6:36355486..36355497,-!p3@ETV7!1.11!11.97!ETV7;;chr3:39195037..39195069,-!p2@CSRNP1!1.10!72.21!CSRNP1;;chr2:70167296..70167306,+!p3@MXD1!1.10!17.75!MXD1;;chr10:104155480..104155534,+!p2@NFKB2!1.09!74.20!NFKB2;;chr8:116681123..116681143,-!p4@TRPS1!1.09!21.74!TRPS1;;chr16:79633682..79633694,-!p12@MAF!1.09!11.17!MAF;;chr19:45251943..45252006,+!p1@BCL3!1.08!293.21!BCL3;;chr18:3449586..3449617,+!p8@TGIF1!1.08!17.55!TGIF1;;chr19:13213662..13213686,-!p1@LYL1!1.08!16.56!LYL1;;chr1:158985686..158985719,+!p15@IFI16!1.08!10.97!IFI16;;chr3:107318352..107318392,+!p14@BBX!1.08!10.97!BBX;;chr3:187455529..187455544,-!p5@BCL6!1.08!10.97!BCL6;;chr21:36260980..36261011,-!p1@RUNX1!1.07!313.36!RUNX1;;chr6:44233252..44233296,-!p1@NFKBIE!1.07!107.71!NFKBIE;;chr19:45254529..45254561,+!p10@BCL3!1.07!14.56!BCL3;;chr1:221053526..221053540,+!p13@HLX!1.07!10.77!HLX;;chr1:25291620..25291635,-!p4@RUNX3!1.07!10.77!RUNX3;;chr6:106535687..106535706,+!p8@PRDM1!1.07!10.77!PRDM1;;chr2:191885737..191885750,-!p4@STAT1!1.07!10.77!STAT1;;chr12:56753869..56753930,-!p1@STAT2!1.06!461.16!STAT2;;chr1:158979851..158979865,+!p5@IFI16!1.06!23.34!IFI16;;chr3:170075436..170075520,+!p1@SKIL!1.05!221.40!SKIL;;chr9:129567282..129567353,+!p1@ZBTB43!1.05!136.43!ZBTB43;;chr9:3525727..3525828,-!p2@RFX3!1.05!26.33!RFX3;;chr2:145275228..145275241,-!p11@ZEB2!1.05!12.37!ZEB2;;chr12:96588219..96588263,+!p2@ELK3!1.04!73.20!ELK3;;chr6:15246200..15246214,+!p2@JARID2!1.04!27.73!JARID2;;chr19:36391434..36391450,-!p1@NFKBID!1.04!19.95!NFKBID;;chr3:39195139..39195150,-!p3@CSRNP1!1.04!12.77!CSRNP1;;chr2:70142189..70142223,+!p2@MXD1!1.03!70.81!MXD1;;chr14:74226961..74227020,-!p1@C14orf43!1.03!64.83!C14orf43;;chr17:79885537..79885554,-!p2@MAFG!1.03!18.75!MAFG;;chr17:38474489..38474548,+!p1@RARA!1.02!304.38!RARA;;chr18:3449695..3449712,+!p9@TGIF1!1.02!14.76!TGIF1;;chr13:41593392..41593403,-!p7@ELF1!1.02!9.57!ELF1;;chr10:104154246..104154347,+!p3@NFKB2!1.01!58.24!NFKB2;;chr3:63898321..63898396,+!p3@ATXN7!1.01!21.54!ATXN7;;chr8:71316428..71316459,-!p2@NCOA2!1.01!15.56!NCOA2;;chr19:45254508..45254528,+!p12@BCL3!1.01!10.17!BCL3;;chr1:221054922..221054933,+!p16@HLX!1.01!9.18!HLX;;chr5:71803177..71803255,-!p1@ZNF366!1.01!9.18!ZNF366;;chr7:17338324..17338341,+!p3@AHR!1.00!30.72!AHR;;chr2:28618532..28618610,+!p4@FOSL2!1.00!15.76!FOSL2;;chr14:35873947..35873965,-!p1@NFKBIA!0.99!566.48!NFKBIA;;chr19:42636586..42636607,-!p1@POU2F2!0.99!24.73!POU2F2;;chr18:3448455..3448480,+!p5@TGIF1!0.99!16.56!TGIF1;;chr17:79881332..79881348,-!p3@MAFG!0.99!12.97!MAFG;;chr12:54785054..54785072,-!p4@ZNF385A!0.99!9.97!ZNF385A;;chr12:96588368..96588394,+!p3@ELK3!0.98!23.54!ELK3;;chr20:48807456..48807475,+!p3@CEBPB!0.98!16.75!CEBPB;;chr20:48807615..48807644,+!p6@CEBPB!0.98!14.56!CEBPB;;chr18:3449618..3449634,+!p13@TGIF1!0.98!10.57!TGIF1;;chr10:3827371..3827386,-!p2@KLF6!0.97!73.00!KLF6;;chr7:150974206..150974255,-!p1@SMARCD3!0.97!53.66!SMARCD3;;chr21:36259445..36259519,-!p4@RUNX1!0.97!24.14!RUNX1;;chr6:126240380..126240430,+!p2@NCOA7!0.97!21.94!NCOA7;;chr2:185463247..185463263,+!p1@ZNF80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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000629,FF:0011443,FF:11871-125B8
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor2.CNhs13476.11871-125B8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor2.CNhs13476.11871-125B8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor2.CNhs13476.11871-125B8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor2.CNhs13476.11871-125B8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor2.CNhs13476.11871-125B8.hg38.nobarcode.ctss.bed.gz
 |id=FF:11871-125B8
 |is_a=EFO:0002091;;FF:0011443
 |is_obsolete=
+|library_id=CNhs13476
+|library_id_phase_based=2:CNhs13476
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11871
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11871
 |name=CD14+ monocytes - treated with IFN + N-hexane, donor2
 |namespace=
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13476,LSID1024,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
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@@ Line 59: / Line 79: @@
 |rna_weight_ug=3.81519
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+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=STAT2,4,6:4.74160591604;STAT1,3:4.06598506238;IRF7:3.85716160805;IRF1,2:3.75328749558;STAT5{A,B}:3.74168408721;NFE2L2:2.95468493496;CEBPA,B_DDIT3:2.80190871156;NFE2:2.79277195232;EP300:2.63365478301;SPIB:2.6272047293;SPI1:2.47775447696;NANOG{mouse}:2.47153884679;FOXP3:2.42770893108;FOSL2:2.40856293259;PAX2:2.36971567791;SREBF1,2:2.36875228267;NR1H4:2.17783834131;ETS1,2:2.12728863815;DMAP1_NCOR{1,2}_SMARC:2.05914100919;BACH2:1.95688323662;FOS_FOS{B,L1}_JUN{B,D}:1.85890066415;HLF:1.7121830707;NFIL3:1.66868267344;ATF4:1.66180897924;TLX2:1.64831588853;FOXN1:1.54630028114;RUNX1..3:1.48216677112;TGIF1:1.46454234273;NFE2L1:1.46071818344;ELF1,2,4:1.41621498659;ATF5_CREB3:1.40079519287;ATF6:1.32605923097;NFKB1_REL_RELA:1.19395371435;ALX4:1.15647512963;TFCP2:1.15529070501;CREB1:1.04564345289;ZBTB16:0.973552393681;FOXD3:0.936907238755;HIF1A:0.93632318856;HMX1:0.923019958326;SPZ1:0.848031498439;BPTF:0.84368259574;SMAD1..7,9:0.679812955196;ESRRA:0.66345617741;GLI1..3:0.648895283717;RXRA_VDR{dimer}:0.628128793476;PDX1:0.60810788665;PITX1..3:0.601022729442;NR6A1:0.597501557399;JUN:0.545979447822;FOX{D1,D2}:0.530341400125;HSF1,2:0.498888553027;HMGA1,2:0.480203341594;ATF2:0.456994831744;PAX3,7:0.453190104615;HBP1_HMGB_SSRP1_UBTF:0.415473723802;CDX1,2,4:0.389433346759;MAFB:0.310155266413;GATA4:0.249894319657;FOXO1,3,4:0.206404596581;IKZF2:0.197084772501;FOXP1:0.181870063606;FOX{F1,F2,J1}:0.173567031301;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.145011714756;TOPORS:0.134203095912;AHR_ARNT_ARNT2:0.109341824728;NKX6-1,2:0.107056986238;ESR1:0.0698652621669;PRDM1:0.0510947350078;NANOG:0.00475613816588;RFX2..5_RFXANK_RFXAP:-0.00955691015406;SRF:-0.0570903980325;PAX8:-0.0817821346646;NKX3-2:-0.0983508696932;PAX4:-0.117060474657;EN1,2:-0.133667728394;XBP1:-0.140132718464;MYB:-0.145210737134;HES1:-0.22770368051;NFATC1..3:-0.237578361693;TBP:-0.266787344656;HOX{A6,A7,B6,B7}:-0.29650149921;POU1F1:-0.297179622474;RXR{A,B,G}:-0.324763306759;EGR1..3:-0.332257102828;TFAP4:-0.335628093299;OCT4_SOX2{dimer}:-0.336913354313;RREB1:-0.381486759689;HNF4A_NR2F1,2:-0.43450408887;MYFfamily:-0.463581332423;PPARG:-0.482659172314;MZF1:-0.494785622538;NKX2-2,8:-0.523217420488;RBPJ:-0.524132560998;POU5F1:-0.548959085662;VSX1,2:-0.601205164661;ALX1:-0.611222298814;ZNF238:-0.634172789435;FOXM1:-0.63425380053;MED-1{core}:-0.634591060889;NFIX:-0.650645608362;HOXA9_MEIS1:-0.683066460465;MEF2{A,B,C,D}:-0.716119296196;REST:-0.719872725682;CUX2:-0.731754084785;SOX2:-0.734727072475;IKZF1:-0.737431305621;NHLH1,2:-0.742731417347;HOX{A5,B5}:-0.783923297587;MYOD1:-0.78901999316;PATZ1:-0.798831179074;HNF1A:-0.811247580596;POU2F1..3:-0.868575475517;PRRX1,2:-0.870347230851;TFAP2{A,C}:-0.878712655971;PAX1,9:-0.887579495462;DBP:-0.931174910473;TFAP2B:-0.940712048726;AIRE:-0.941762415572;MTE{core}:-0.96630369909;ZBTB6:-0.975013654923;GATA6:-0.976702694555;MYBL2:-0.994273806606;ZNF148:-0.997889024961;GZF1:-1.00496741647;MTF1:-1.03780902771;TAL1_TCF{3,4,12}:-1.03840373031;SOX5:-1.05536371075;EVI1:-1.0568641636;GCM1,2:-1.0818013068;NKX3-1:-1.10097761679;HAND1,2:-1.1121423928;ZFP161:-1.12150838688;FOXL1:-1.14384909792;KLF4:-1.15051501608;UFEwm:-1.18056959939;NKX2-3_NKX2-5:-1.2044780756;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.20612427574;PAX6:-1.20699293315;ZEB1:-1.21920971337;MAZ:-1.24177631957;TP53:-1.24446361785;SP1:-1.26843948457;NR3C1:-1.27336795504;XCPE1{core}:-1.28149270609;RORA:-1.33253301566;LMO2:-1.36636098298;GTF2I:-1.37378008352;RFX1:-1.39874231683;CRX:-1.40046698053;BREu{core}:-1.40563531048;POU6F1:-1.41807305899;GTF2A1,2:-1.44093593791;SNAI1..3:-1.44532258957;TLX1..3_NFIC{dimer}:-1.4775712259;FOXA2:-1.48589444594;EBF1:-1.48640842904;E2F1..5:-1.4900870053;ZIC1..3:-1.50976345285;TEAD1:-1.54018864824;ZNF423:-1.56418517769;TFDP1:-1.58413018205;HIC1:-1.62130852064;ELK1,4_GABP{A,B1}:-1.64691805277;T:-1.67004293202;TEF:-1.73415204055;ZNF384:-1.74312203453;NKX2-1,4:-1.79545003057;YY1:-1.79926278161;PAX5:-1.87855441618;SOX{8,9,10}:-1.90544706185;AR:-1.92551092178;bHLH_family:-1.96545401586;GFI1B:-1.97074924205;NR5A1,2:-1.98067293221;ADNP_IRX_SIX_ZHX:-1.99596887495;ONECUT1,2:-2.04698190141;FOX{I1,J2}:-2.07768189024;TBX4,5:-2.11149062271;HOX{A4,D4}:-2.13265328135;CDC5L:-2.16170646414;FOXQ1:-2.19353269238;NFY{A,B,C}:-2.23057056418;POU3F1..4:-2.31038191515;NRF1:-2.41460849533;GFI1:-2.44903067848;SOX17:-2.45690377784;PBX1:-2.66090803963;ARID5B:-2.73597937484;ZNF143:-2.86157247667;LEF1_TCF7_TCF7L1,2:-2.90822213215;LHX3,4:-2.93169508713
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11871-125B8;search_select_hide=table117:FF:11871-125B8
 }}

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FF:11871-125B8: Difference between revisions

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Latest revision as of 18:25, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0