FF:11873-125C1: Difference between revisions

Latest revision as of 18:25, 4 June 2020

Name:	CD14+ monocytes - mock treated, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13484
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	male
age	51
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D4-4
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005767

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13484		CAGE		DRX008133		DRR009005

Accession ID Hg19

Library id		BAM		CTSS
CNhs13484		DRZ000430		DRZ001815

Accession ID Hg38

Library id		BAM		CTSS
CNhs13484		DRZ011780		DRZ013165

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.139
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.119
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.329
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.49
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.119
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.139
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.743
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.139
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.139
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.139
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.383
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.36
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0307
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.824
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.139
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.139
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.128
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.139
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.00134
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.244
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.766
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.244
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.894
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.585
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.329
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.824
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.291
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.457
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.4
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.329
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.173
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.709
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.461
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.139
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.892
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.244
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.583
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.069
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.139
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.4
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.881
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.244
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.139
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.244
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13484

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.13982e-6
MA0003.1	MA0003.1	0.297
MA0004.1	MA0004.1	0.382
MA0006.1	MA0006.1	0.799
MA0007.1	MA0007.1	0.804
MA0009.1	MA0009.1	0.254
MA0014.1	MA0014.1	0.955
MA0017.1	MA0017.1	0.0104
MA0018.2	MA0018.2	0.439
MA0019.1	MA0019.1	0.638
MA0024.1	MA0024.1	8.41664e-4
MA0025.1	MA0025.1	0.0304
MA0027.1	MA0027.1	0.784
MA0028.1	MA0028.1	0.164
MA0029.1	MA0029.1	0.425
MA0030.1	MA0030.1	0.563
MA0031.1	MA0031.1	0.957
MA0035.2	MA0035.2	0.537
MA0038.1	MA0038.1	0.0195
MA0039.2	MA0039.2	0.693
MA0040.1	MA0040.1	0.338
MA0041.1	MA0041.1	0.561
MA0042.1	MA0042.1	0.822
MA0043.1	MA0043.1	0.0189
MA0046.1	MA0046.1	0.147
MA0047.2	MA0047.2	0.45
MA0048.1	MA0048.1	0.844
MA0050.1	MA0050.1	3.35974e-4
MA0051.1	MA0051.1	0.138
MA0052.1	MA0052.1	0.911
MA0055.1	MA0055.1	0.297
MA0057.1	MA0057.1	0.727
MA0058.1	MA0058.1	0.162
MA0059.1	MA0059.1	0.489
MA0060.1	MA0060.1	1.05446e-11
MA0061.1	MA0061.1	0.00221
MA0062.2	MA0062.2	0.315
MA0065.2	MA0065.2	0.0194
MA0066.1	MA0066.1	0.0802
MA0067.1	MA0067.1	7.81356e-4
MA0068.1	MA0068.1	0.194
MA0069.1	MA0069.1	0.722
MA0070.1	MA0070.1	0.05
MA0071.1	MA0071.1	0.202
MA0072.1	MA0072.1	0.738
MA0073.1	MA0073.1	0.3
MA0074.1	MA0074.1	0.212
MA0076.1	MA0076.1	0.156
MA0077.1	MA0077.1	0.183
MA0078.1	MA0078.1	0.548
MA0079.2	MA0079.2	0.789
MA0080.2	MA0080.2	1.21096e-16
MA0081.1	MA0081.1	3.78659e-4
MA0083.1	MA0083.1	0.723
MA0084.1	MA0084.1	0.779
MA0087.1	MA0087.1	0.928
MA0088.1	MA0088.1	0.496
MA0090.1	MA0090.1	0.12
MA0091.1	MA0091.1	0.372
MA0092.1	MA0092.1	0.224
MA0093.1	MA0093.1	0.378
MA0099.2	MA0099.2	3.01452e-33
MA0100.1	MA0100.1	0.671
MA0101.1	MA0101.1	0.0505
MA0102.2	MA0102.2	5.46054e-5
MA0103.1	MA0103.1	0.714
MA0104.2	MA0104.2	0.951
MA0105.1	MA0105.1	5.03304e-6
MA0106.1	MA0106.1	0.735
MA0107.1	MA0107.1	0.0193
MA0108.2	MA0108.2	0.0018
MA0111.1	MA0111.1	0.308
MA0112.2	MA0112.2	5.43569e-5
MA0113.1	MA0113.1	0.991
MA0114.1	MA0114.1	0.18
MA0115.1	MA0115.1	0.616
MA0116.1	MA0116.1	2.34896e-4
MA0117.1	MA0117.1	0.319
MA0119.1	MA0119.1	0.422
MA0122.1	MA0122.1	0.629
MA0124.1	MA0124.1	0.359
MA0125.1	MA0125.1	0.392
MA0131.1	MA0131.1	0.371
MA0135.1	MA0135.1	0.292
MA0136.1	MA0136.1	9.20282e-16
MA0137.2	MA0137.2	0.772
MA0138.2	MA0138.2	0.77
MA0139.1	MA0139.1	0.78
MA0140.1	MA0140.1	0.497
MA0141.1	MA0141.1	0.0644
MA0142.1	MA0142.1	0.57
MA0143.1	MA0143.1	0.49
MA0144.1	MA0144.1	0.238
MA0145.1	MA0145.1	0.164
MA0146.1	MA0146.1	0.0568
MA0147.1	MA0147.1	0.984
MA0148.1	MA0148.1	0.978
MA0149.1	MA0149.1	0.196
MA0150.1	MA0150.1	7.75027e-13
MA0152.1	MA0152.1	0.279
MA0153.1	MA0153.1	0.00583
MA0154.1	MA0154.1	0.00205
MA0155.1	MA0155.1	0.737
MA0156.1	MA0156.1	1.77919e-8
MA0157.1	MA0157.1	0.548
MA0159.1	MA0159.1	0.0113
MA0160.1	MA0160.1	0.0237
MA0162.1	MA0162.1	0.966
MA0163.1	MA0163.1	3.97054e-6
MA0164.1	MA0164.1	0.747
MA0258.1	MA0258.1	0.00248
MA0259.1	MA0259.1	0.466

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13484

Novel motif	Logo	P-value
1	1	0.123
10	10	0.0241
100	100	0.604
101	101	0.611
102	102	0.338
103	103	0.244
104	104	0.727
105	105	0.335
106	106	6.73142e-4
107	107	0.14
108	108	0.999
109	109	0.22
11	11	0.2
110	110	0.295
111	111	0.0536
112	112	0.192
113	113	0.604
114	114	0.0161
115	115	0.236
116	116	0.792
117	117	0.0659
118	118	0.189
119	119	0.191
12	12	0.378
120	120	0.921
121	121	0.519
122	122	0.51
123	123	0.0585
124	124	0.816
125	125	0.83
126	126	0.253
127	127	0.252
128	128	0.0206
129	129	0.412
13	13	0.271
130	130	0.133
131	131	0.376
132	132	0.0748
133	133	0.94
134	134	0.56
135	135	0.219
136	136	0.819
137	137	0.00391
138	138	0.174
139	139	0.037
14	14	0.387
140	140	0.119
141	141	0.441
142	142	0.964
143	143	0.027
144	144	0.834
145	145	0.545
146	146	0.62
147	147	0.26
148	148	0.0155
149	149	0.598
15	15	0.157
150	150	0.51
151	151	0.281
152	152	0.0821
153	153	0.363
154	154	0.383
155	155	0.27
156	156	0.88
157	157	0.48
158	158	0.0815
159	159	0.739
16	16	0.326
160	160	0.473
161	161	0.596
162	162	0.364
163	163	0.605
164	164	0.175
165	165	0.141
166	166	0.504
167	167	0.308
168	168	0.466
169	169	0.00913
17	17	0.16
18	18	0.173
19	19	0.257
2	2	0.823
20	20	0.447
21	21	0.208
22	22	0.155
23	23	0.0568
24	24	0.243
25	25	0.334
26	26	0.045
27	27	0.618
28	28	0.416
29	29	0.386
3	3	0.0713
30	30	0.701
31	31	0.674
32	32	0.831
33	33	0.625
34	34	0.309
35	35	0.201
36	36	0.256
37	37	0.0675
38	38	0.299
39	39	0.728
4	4	0.723
40	40	0.306
41	41	0.0134
42	42	0.37
43	43	0.0509
44	44	0.694
45	45	0.61
46	46	0.124
47	47	0.584
48	48	0.484
49	49	0.116
5	5	0.207
50	50	0.976
51	51	0.317
52	52	0.259
53	53	0.244
54	54	0.274
55	55	0.202
56	56	0.631
57	57	0.769
58	58	0.0781
59	59	0.0892
6	6	0.587
60	60	0.0385
61	61	0.423
62	62	0.0268
63	63	0.465
64	64	0.421
65	65	0.199
66	66	0.345
67	67	0.426
68	68	0.773
69	69	0.638
7	7	0.252
70	70	0.0162
71	71	0.0355
72	72	0.246
73	73	0.0894
74	74	0.0425
75	75	0.0802
76	76	0.285
77	77	0.371
78	78	0.0865
79	79	0.0912
8	8	0.361
80	80	0.237
81	81	0.399
82	82	0.0839
83	83	0.145
84	84	0.663
85	85	0.00833
86	86	0.0356
87	87	0.365
88	88	0.409
89	89	0.31
9	9	0.332
90	90	0.0722
91	91	0.349
92	92	0.144
93	93	0.143
94	94	0.033
95	95	0.405
96	96	0.543
97	97	0.999
98	98	0.142
99	99	0.159

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13484

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011101 human CD14-positive monocytes - mock treated sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0011101 (human CD14-positive monocytes - mock treated sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005767
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008133;DRR009005;DRZ000430;DRZ001815;DRZ011780;DRZ013165
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000343,FF:0000350,FF:0011101
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:47400078..47400106,-!p1@SPI1!2.72!528.27!SPI1;;chr2:68592406..68592424,+!p1@PLEK!2.62!419.82!PLEK;;chr12:54778471..54778528,-!p1@ZNF385A!2.55!356.34!ZNF385A;;chr21:34442439..34442455,+!p1@OLIG1!2.39!245.24!OLIG1;;chr7:115670804..115670825,-!p1@TFEC!2.30!196.50!TFEC;;chr16:85932760..85932775,+!p1@IRF8!2.20!156.06!IRF8;;chr11:47399947..47399961,-!p3@SPI1!2.06!112.61!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!2.01!186.29!RUNX3;;chr11:47400062..47400077,-!p2@SPI1!1.98!94.09!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.87!72.93!SPI1;;chr19:50432132..50432217,+!p2@ATF5!1.80!73.31!ATF5;;chr11:47400032..47400043,-!p5@SPI1!1.79!60.08!SPI1;;chr20:39317868..39317884,-!p1@MAFB!1.78!661.28!MAFB;;chr6:106534192..106534224,+!p1@PRDM1!1.76!154.17!PRDM1;;chr19:33793430..33793447,-!p1@CEBPA!1.72!208.97!CEBPA;;chr12:54778351..54778378,-!p6@ZNF385A!1.72!51.77!ZNF385A;;chr21:34398234..34398250,+!p1@OLIG2!1.71!50.26!OLIG2;;chr2:145277640..145277771,-!p1@ZEB2!1.63!532.81!ZEB2;;chr7:128577972..128578047,+!p1@IRF5!1.61!61.22!IRF5;;chr21:34442540..34442560,+!p2@OLIG1!1.61!40.05!OLIG1;;chr6:106534230..106534254,+!p2@PRDM1!1.54!82.38!PRDM1;;chr10:31288398..31288455,-!p2@ZNF438!1.54!39.30!ZNF438;;chr21:30671690..30671762,+!p2@BACH1!1.53!108.45!BACH1;;chr21:36260295..36260310,-!p3@RUNX1!1.51!49.50!RUNX1;;chr7:50344289..50344323,+!p1@IKZF1!1.49!30.23!IKZF1;;chr11:47400045..47400060,-!p6@SPI1!1.49!29.85!SPI1;;chr2:70142232..70142251,+!p1@MXD1!1.48!157.95!MXD1;;chr1:25256439..25256476,-!p3@RUNX3!1.48!29.47!RUNX3;;chr10:31288370..31288393,-!p3@ZNF438!1.48!29.10!ZNF438;;chr10:64576105..64576133,-!p1@EGR2!1.45!55.17!EGR2;;chr10:51572408..51572454,+!p3@NCOA4!1.43!144.73!NCOA4;;chr6:144385698..144385742,-!p2@PLAGL1!1.42!30.23!PLAGL1;;chr19:13213662..13213686,-!p1@LYL1!1.41!36.28!LYL1;;chr20:48599506..48599526,+!p1@SNAI1!1.35!134.52!SNAI1;;chr6:15246200..15246214,+!p2@JARID2!1.35!57.82!JARID2;;chr19:45251395..45251432,+!p8@BCL3!1.35!21.16!BCL3;;chr13:41593425..41593480,-!p1@ELF1!1.34!128.10!ELF1;;chr3:12329397..12329433,+!p2@PPARG!1.34!46.86!PPARG;;chr12:48298765..48298783,-!p2@VDR!1.34!42.70!VDR;;chrX:129244454..129244488,-!p1@ELF4!1.33!143.21!ELF4;;chr2:145275162..145275202,-!p2@ZEB2!1.33!116.76!ZEB2;;chr16:31885093..31885165,+!p1@ZNF267!1.30!281.14!ZNF267;;chr12:96588279..96588299,+!p4@ELK3!1.29!85.02!ELK3;;chr19:19496539..19496576,+!p8@GATAD2A!1.29!32.50!GATAD2A;;chr11:47399920..47399931,-!p7@SPI1!1.29!18.52!SPI1;;chr21:30671235..30671253,+!p1@BACH1!1.28!225.21!BACH1;;chr10:35484053..35484076,+!p1@CREM!1.28!44.21!CREM;;chr12:96588219..96588263,+!p2@ELK3!1.26!120.54!ELK3;;chr2:238600933..238600985,+!p3@LRRFIP1!1.26!91.82!LRRFIP1;;chr12:48298785..48298828,-!p1@VDR!1.26!88.80!VDR;;chrX:129244430..129244442,-!p5@ELF4!1.26!17.38!ELF4;;chr6:391743..391759,+!p1@IRF4!1.25!16.63!IRF4;;chr10:51572339..51572376,+!p4@NCOA4!1.24!36.65!NCOA4;;chr6:44233252..44233296,-!p1@NFKBIE!1.23!154.93!NFKBIE;;chr19:45971246..45971265,+!p1@FOSB!1.22!287.19!FOSB;;chr2:145277882..145277967,-!p3@ZEB2!1.20!25.70!ZEB2;;chr17:38497662..38497713,+!p4@RARA!1.20!17.38!RARA;;chr20:48807351..48807384,+!p1@CEBPB!1.19!1466.54!CEBPB;;chr5:88178983..88179012,-!p1@MEF2C!1.19!110.72!MEF2C;;chr18:3449720..3449749,+!p2@TGIF1!1.19!30.61!TGIF1;;chr2:68592394..68592405,+!p2@PLEK!1.19!14.36!PLEK;;chr4:106068026..106068084,+!p1@TET2!1.18!125.08!TET2;;chr12:96588368..96588394,+!p3@ELK3!1.18!38.17!ELK3;;chr2:238600998..238601013,+!p5@LRRFIP1!1.16!13.60!LRRFIP1;;chr21:30672433..30672464,+!p6@BACH1!1.16!13.60!BACH1;;chr12:11802753..11802834,+!p2@ETV6!1.15!63.48!ETV6;;chr21:36421535..36421610,-!p2@RUNX1!1.15!47.23!RUNX1;;chr9:117150254..117150271,-!p1@AKNA!1.15!35.90!AKNA;;chr12:72056749..72056767,+!p6@THAP2!1.15!14.74!THAP2;;chr7:149470641..149470694,-!p1@ZNF467!1.14!57.44!ZNF467;;chr18:3449618..3449634,+!p13@TGIF1!1.14!15.87!TGIF1;;chr14:35872453..35872485,-!p2@NFKBIA!1.13!30.99!NFKBIA;;chr2:70314240..70314256,+!p4@PCBP1!1.10!24.18!PCBP1;;chr12:54694758..54694805,-!p1@NFE2!1.10!13.98!NFE2;;chr1:25291620..25291635,-!p4@RUNX3!1.10!11.71!RUNX3;;chr1:156470515..156470542,-!p2@MEF2D!1.08!58.19!MEF2D;;chr9:88969287..88969297,-!p3@ZCCHC6!1.08!14.74!ZCCHC6;;chr7:17338266..17338282,+!p1@AHR!1.07!117.14!AHR;;chr2:185463247..185463263,+!p1@ZNF804A!1.07!19.27!ZNF804A;;chr12:54785074..54785122,-!p2@ZNF385A!1.07!16.63!ZNF385A;;chr9:129567282..129567353,+!p1@ZBTB43!1.06!139.06!ZBTB43;;chr2:97202480..97202499,+!p1@ARID5A!1.06!106.94!ARID5A;;chr12:124873852..124873881,-!p3@NCOR2!1.06!64.24!NCOR2;;chr19:45250948..45250998,+!p3@BCL3!1.06!26.83!BCL3;;chr6:106535598..106535637,+!p7@PRDM1!1.06!10.58!PRDM1;;chr19:13213954..13214021,-!p4@LYL1!1.06!10.58!LYL1;;chr9:88969303..88969335,-!p1@ZCCHC6!1.05!95.98!ZCCHC6;;chr19:19496624..19496660,+!p3@GATAD2A!1.05!47.61!GATAD2A;;chr7:50343634..50343717,+!p2@IKZF1!1.05!10.20!IKZF1;;chr13:41593392..41593403,-!p7@ELF1!1.05!10.20!ELF1;;chr2:28618532..28618610,+!p4@FOSL2!1.04!17.38!FOSL2;;chr1:212782094..212782109,+!p1@ATF3!1.03!269.43!ATF3;;chr3:170075436..170075520,+!p1@SKIL!1.03!213.88!SKIL;;chr4:103422499..103422632,+!p1@NFKB1!1.03!204.05!NFKB1;;chr2:61108695..61108753,+!p1@REL!1.03!68.40!REL;;chr19:42636586..42636607,-!p1@POU2F2!1.03!27.58!POU2F2;;chr15:90544532..90544563,+!p1@ZNF710!1.03!19.65!ZNF710;;chr10:64018918..64018936,+!p2@ZNF365!1.03!9.82!ZNF365;;chrX:153305787..153305807,-!p3@MECP2!1.02!9.45!MECP2;;chr1:157108130..157108173,-!p1@ETV3!1.01!68.40!ETV3;;chr9:102584159..102584174,+!p2@NR4A3!1.00!16.63!NR4A3;;chr18:3449586..3449617,+!p8@TGIF1!1.00!14.74!TGIF1;;chr18:3449695..3449712,+!p9@TGIF1!1.00!13.98!TGIF1;;chr7:137620684..137620711,-!p4@CREB3L2!1.00!9.07!CREB3L2;;chr2:145277589..145277612,-!p12@ZEB2!0.99!8.69!ZEB2;;chr6:15246261..15246312,+!p1@JARID2!0.98!211.99!JARID2;;chr2:231280954..231280965,+!p2@SP100!0.98!15.87!SP100;;chr1:156470494..156470505,-!p3@MEF2D!0.98!12.47!MEF2D;;chr12:72056773..72056796,+!p3@THAP2!0.98!11.34!THAP2;;chr17:38474489..38474548,+!p1@RARA!0.97!270.94!RARA;;chr11:615942..615957,-!p1@IRF7!0.97!81.24!IRF7;;chr10:94449703..94449718,+!p1@HHEX!0.97!32.88!HHEX;;chr19:45252008..45252024,+!p2@BCL3!0.97!28.34!BCL3;;chr19:36391434..36391450,-!p1@NFKBID!0.97!16.63!NFKBID;;chr10:135044190..135044229,+!p3@UTF1!0.97!8.31!UTF1;;chr8:116681123..116681143,-!p4@TRPS1!0.96!15.87!TRPS1;;chr8:71316428..71316459,-!p2@NCOA2!0.96!13.98!NCOA2;;chr7:17338324..17338341,+!p3@AHR!0.95!27.21!AHR;;chr14:64971014..64971044,+!p4@ZBTB1!0.95!13.23!ZBTB1;;chr5:88179195..88179224,-!p3@MEF2C!0.95!12.85!MEF2C;;chr21:36260343..36260402,-!p6@RUNX1!0.95!12.85!RUNX1;;chr4:185395633..185395651,-!p2@IRF2!0.94!12.47!IRF2;;chr19:50432104..50432126,+!p6@ATF5!0.93!7.56!ATF5;;chr8:53373491..53373506,-!p4@ST18!0.93!7.56!ST18;;chr2:28615716..28615733,+!p1@FOSL2!0.92!364.65!FOSL2;;chr17:40440481..40440550,+!p1@STAT5A!0.92!54.41!STAT5A;;chr14:35873947..35873965,-!p1@NFKBIA!0.91!476.88!NFKBIA;;chr10:104155480..104155534,+!p2@NFKB2!0.90!47.61!NFKB2;;chr12:54785054..54785072,-!p4@ZNF385A!0.90!7.94!ZNF385A;;chr7:150974206..150974255,-!p1@SMARCD3!0.89!43.83!SMARCD3;;chr1:158979872..158979898,+!p3@IFI16!0.89!21.54!IFI16;;chr2:74730430..74730451,-!p1@LBX2!0.89!11.34!LBX2;;chr3:12330560..12330579,+!p1@PPARG!0.89!7.94!PPARG;;chr16:88752861..88752884,-!p2@SNAI3!0.89!6.80!SNAI3;;chr1:25291648..25291665,-!p7@RUNX3!0.89!6.80!RUNX3;;chr7:115670792..115670797,-!p2@TFEC!0.89!6.80!TFEC;;chr21:36260980..36261011,-!p1@RUNX1!0.88!201.41!RUNX1;;chr1:158979792..158979814,+!p2@IFI16!0.88!66.88!IFI16;;chr10:104154246..104154347,+!p3@NFKB2!0.88!42.70!NFKB2;;chr18:3449527..3449582,+!p6@TGIF1!0.88!12.85!TGIF1;;chr13:41635029..41635044,-!p4@ELF1!0.87!13.98!ELF1;;chr20:48807456..48807475,+!p3@CEBPB!0.87!12.85!CEBPB;;chr5:142782823..142782854,-!p3@NR3C1!0.87!9.45!NR3C1;;chr6:15246741..15246765,+!p9@JARID2!0.87!6.42!JARID2;;chr2:231090433..231090469,+!p1@SP140!0.87!6.42!SP140;;chrX:106960285..106960299,-!p1@TSC22D3!0.86!176.85!TSC22D3;;chr15:31619013..31619095,+!p1@KLF13!0.86!153.80!KLF13;;chr9:110252035..110252057,-!p1@KLF4!0.85!104.67!KLF4;;chrX:106960180..106960197,-!p2@TSC22D3!0.85!24.56!TSC22D3;;chr21:36259445..36259519,-!p4@RUNX1!0.85!17.76!RUNX1;;chr16:3313791..3313834,+!p2@ZNF263!0.85!13.98!ZNF263;;chr14:75988771..75988826,+!p1@BATF!0.85!8.31!BATF;;chr15:90544182..90544195,+!p7@ZNF710!0.85!6.05!ZNF710;;chr5:71803177..71803255,-!p1@ZNF366!0.85!6.05!ZNF366;;chr7:28725740..28725778,+!p1@CREB5!0.84!55.93!CREB5;;chr7:99156434..99156510,+!p2@ZNF655!0.84!38.17!ZNF655;;chr1:158979851..158979865,+!p5@IFI16!0.84!13.60!IFI16;;chr18:3448455..3448480,+!p5@TGIF1!0.84!11.34!TGIF1;;chr6:20403916..20403965,+!p3@E2F3!0.83!27.58!E2F3;;chr2:208394817..208394834,+!p3@CREB1!0.83!24.94!CREB1;;chr14:35872962..35873025,-!p3@NFKBIA!0.83!15.49!NFKBIA;;chr17:79881332..79881348,-!p3@MAFG!0.83!8.69!MAFG;;chr12:72056800..72056834,+!p1@THAP2!0.83!7.94!THAP2;;chr19:13213704..13213726,-!p3@LYL1!0.82!7.56!LYL1;;chr6:34204973..34204990,+!p4@HMGA1!0.81!79.35!HMGA1;;chr10:3827371..3827386,-!p2@KLF6!0.81!49.50!KLF6;;chr19:4067039..4067064,-!p3@ZBTB7A!0.81!17.00!ZBTB7A;;chr19:19496577..19496619,+!p5@GATAD2A!0.80!19.27!GATAD2A;;chr14:103059006..103059017,+!p2@RCOR1!0.80!8.69!RCOR1;;chr20:48807648..48807671,+!p9@CEBPB!0.80!7.94!CEBPB;;chr9:110250697..110250738,-!p2@KLF4!0.80!6.42!KLF4;;chr7:137620650..137620677,-!p3@CREB3L2!0.80!5.29!CREB3L2;;chr1:25291475..25291511,-!p2@RUNX3!0.80!5.29!RUNX3;;chr3:12329464..12329472,+!p6@PPARG!0.80!5.29!PPARG;;chr6:7107939..7107993,+!p1@RREB1!0.79!65.75!RREB1;;chr9:88969339..88969422,-!p2@ZCCHC6!0.79!43.83!ZCCHC6;;chr7:17338239..17338262,+!p2@AHR!0.79!41.57!AHR;;chr19:6110474..6110551,-!p1@RFX2!0.79!34.01!RFX2;;chr14:74226747..74226779,-!p3@C14orf43!0.79!30.99!C14orf43;;chr17:38498594..38498661,+!p2@RARA!0.79!18.52!RARA;;chr14:65569101..65569119,-!p3@MAX!0.79!17.76!MAX;;chr16:88752889..88752921,-!p1@SNAI3!0.79!6.05!SNAI3;;chr8:116681194..116681214,-!p1@TRPS1!0.78!51.77!TRPS1;;chr3:39195037..39195069,-!p2@CSRNP1!0.78!33.63!CSRNP1;;chr9:117160738..117160782,-!p2@AKNA!0.78!22.29!AKNA;;chr9:137217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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=FF:0000343,FF:0011101,FF:11873-125C1
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor2.CNhs13484.11873-125C1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor2.CNhs13484.11873-125C1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor2.CNhs13484.11873-125C1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor2.CNhs13484.11873-125C1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520mock%2520treated%252c%2520donor2.CNhs13484.11873-125C1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11873-125C1
 |is_a=EFO:0002091;;FF:0011101
 |is_obsolete=
+|library_id=CNhs13484
+|library_id_phase_based=2:CNhs13484
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11873
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11873
 |name=CD14+ monocytes - mock treated, donor2
 |namespace=
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13484,LSID1025,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
 |rna_catalog_number=
@@ Line 59: / Line 79: @@
 |rna_weight_ug=3.032505
 |sample_age=51
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 80: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11873-125C1;search_select_hide=table117:FF:11873-125C1
 }}

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FF:11873-125C1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:25, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0