FF:11874-125C2: Difference between revisions

Latest revision as of 18:25, 4 June 2020

Name:	CD14+ monocytes - treated with Group A streptococci, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13532
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	male
age	51
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D4-5
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005380

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13532		CAGE		DRX008148		DRR009020

Accession ID Hg19

Library id		BAM		CTSS
CNhs13532		DRZ000445		DRZ001830

Accession ID Hg38

Library id		BAM		CTSS
CNhs13532		DRZ011795		DRZ013180

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	1.013
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.169
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.552
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.436
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.121
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.121
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.686
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.121
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.81
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.552
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0.121
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.456
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.507
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0612
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.714
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.14
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.416
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.173
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.359
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.359
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.88
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.293
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.838
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.552
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.746
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.94
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.552
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.293
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.594
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.121
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.416
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.552
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.432
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.693
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.9
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.359
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.74
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.122
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.254
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.532
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.00895
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.215
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.374
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.511
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.851
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.359
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.15
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.215
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.215
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.215
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13532

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.47736e-9
MA0003.1	MA0003.1	0.805
MA0004.1	MA0004.1	0.297
MA0006.1	MA0006.1	0.839
MA0007.1	MA0007.1	0.785
MA0009.1	MA0009.1	0.588
MA0014.1	MA0014.1	0.707
MA0017.1	MA0017.1	0.18
MA0018.2	MA0018.2	0.0535
MA0019.1	MA0019.1	0.796
MA0024.1	MA0024.1	0.00469
MA0025.1	MA0025.1	5.91862e-4
MA0027.1	MA0027.1	0.979
MA0028.1	MA0028.1	0.117
MA0029.1	MA0029.1	0.231
MA0030.1	MA0030.1	0.232
MA0031.1	MA0031.1	0.354
MA0035.2	MA0035.2	0.347
MA0038.1	MA0038.1	0.722
MA0039.2	MA0039.2	0.64
MA0040.1	MA0040.1	0.747
MA0041.1	MA0041.1	0.604
MA0042.1	MA0042.1	0.797
MA0043.1	MA0043.1	1.93608e-8
MA0046.1	MA0046.1	0.0203
MA0047.2	MA0047.2	0.324
MA0048.1	MA0048.1	0.75
MA0050.1	MA0050.1	3.54954e-11
MA0051.1	MA0051.1	2.42576e-5
MA0052.1	MA0052.1	0.0347
MA0055.1	MA0055.1	0.611
MA0057.1	MA0057.1	0.401
MA0058.1	MA0058.1	0.11
MA0059.1	MA0059.1	0.146
MA0060.1	MA0060.1	1.19301e-8
MA0061.1	MA0061.1	3.60428e-16
MA0062.2	MA0062.2	0.659
MA0065.2	MA0065.2	0.0396
MA0066.1	MA0066.1	0.0296
MA0067.1	MA0067.1	2.17271e-6
MA0068.1	MA0068.1	0.71
MA0069.1	MA0069.1	0.817
MA0070.1	MA0070.1	0.0313
MA0071.1	MA0071.1	0.428
MA0072.1	MA0072.1	0.553
MA0073.1	MA0073.1	0.386
MA0074.1	MA0074.1	0.149
MA0076.1	MA0076.1	0.168
MA0077.1	MA0077.1	0.266
MA0078.1	MA0078.1	0.372
MA0079.2	MA0079.2	0.129
MA0080.2	MA0080.2	2.94564e-11
MA0081.1	MA0081.1	3.70671e-4
MA0083.1	MA0083.1	0.811
MA0084.1	MA0084.1	0.597
MA0087.1	MA0087.1	0.702
MA0088.1	MA0088.1	0.488
MA0090.1	MA0090.1	0.566
MA0091.1	MA0091.1	0.668
MA0092.1	MA0092.1	0.302
MA0093.1	MA0093.1	0.327
MA0099.2	MA0099.2	2.84712e-44
MA0100.1	MA0100.1	0.858
MA0101.1	MA0101.1	3.15037e-17
MA0102.2	MA0102.2	6.92804e-9
MA0103.1	MA0103.1	0.0268
MA0104.2	MA0104.2	0.288
MA0105.1	MA0105.1	3.09649e-21
MA0106.1	MA0106.1	0.814
MA0107.1	MA0107.1	7.19224e-22
MA0108.2	MA0108.2	0.448
MA0111.1	MA0111.1	0.47
MA0112.2	MA0112.2	2.90208e-4
MA0113.1	MA0113.1	1
MA0114.1	MA0114.1	0.256
MA0115.1	MA0115.1	0.765
MA0116.1	MA0116.1	2.24332e-4
MA0117.1	MA0117.1	0.0398
MA0119.1	MA0119.1	0.232
MA0122.1	MA0122.1	0.607
MA0124.1	MA0124.1	0.245
MA0125.1	MA0125.1	0.29
MA0131.1	MA0131.1	0.358
MA0135.1	MA0135.1	0.276
MA0136.1	MA0136.1	6.03247e-12
MA0137.2	MA0137.2	0.13
MA0138.2	MA0138.2	0.292
MA0139.1	MA0139.1	0.654
MA0140.1	MA0140.1	0.384
MA0141.1	MA0141.1	0.199
MA0142.1	MA0142.1	0.608
MA0143.1	MA0143.1	0.966
MA0144.1	MA0144.1	0.0817
MA0145.1	MA0145.1	0.598
MA0146.1	MA0146.1	0.814
MA0147.1	MA0147.1	0.388
MA0148.1	MA0148.1	0.729
MA0149.1	MA0149.1	0.182
MA0150.1	MA0150.1	5.63344e-22
MA0152.1	MA0152.1	0.731
MA0153.1	MA0153.1	0.00428
MA0154.1	MA0154.1	9.93587e-5
MA0155.1	MA0155.1	0.924
MA0156.1	MA0156.1	1.82119e-8
MA0157.1	MA0157.1	0.863
MA0159.1	MA0159.1	0.027
MA0160.1	MA0160.1	0.0733
MA0162.1	MA0162.1	0.83
MA0163.1	MA0163.1	3.29622e-7
MA0164.1	MA0164.1	0.643
MA0258.1	MA0258.1	0.0283
MA0259.1	MA0259.1	0.774

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13532

Novel motif	Logo	P-value
1	1	0.119
10	10	0.0279
100	100	0.797
101	101	0.764
102	102	0.965
103	103	0.244
104	104	0.568
105	105	0.109
106	106	0.0012
107	107	0.206
108	108	0.556
109	109	0.417
11	11	0.209
110	110	0.212
111	111	0.159
112	112	0.298
113	113	0.486
114	114	0.0345
115	115	0.253
116	116	0.969
117	117	0.119
118	118	0.198
119	119	0.184
12	12	0.314
120	120	0.794
121	121	0.524
122	122	0.592
123	123	0.73
124	124	0.557
125	125	0.344
126	126	0.234
127	127	0.467
128	128	0.0523
129	129	0.37
13	13	0.118
130	130	0.401
131	131	0.849
132	132	0.0423
133	133	0.582
134	134	0.508
135	135	0.802
136	136	0.842
137	137	0.0278
138	138	0.384
139	139	0.117
14	14	0.509
140	140	0.545
141	141	0.272
142	142	0.0326
143	143	0.0238
144	144	0.445
145	145	0.414
146	146	0.853
147	147	0.738
148	148	0.0131
149	149	0.944
15	15	0.165
150	150	0.373
151	151	0.523
152	152	0.395
153	153	0.558
154	154	0.801
155	155	0.919
156	156	0.935
157	157	0.556
158	158	0.0412
159	159	0.139
16	16	0.406
160	160	0.451
161	161	0.486
162	162	0.161
163	163	0.13
164	164	0.16
165	165	0.308
166	166	0.736
167	167	0.33
168	168	0.144
169	169	0.0243
17	17	0.273
18	18	0.0874
19	19	0.526
2	2	0.486
20	20	0.232
21	21	0.828
22	22	0.326
23	23	0.034
24	24	0.408
25	25	0.487
26	26	0.0939
27	27	0.507
28	28	0.396
29	29	0.296
3	3	0.167
30	30	0.49
31	31	0.767
32	32	0.388
33	33	0.272
34	34	0.754
35	35	0.137
36	36	0.0697
37	37	0.0798
38	38	0.37
39	39	0.826
4	4	0.869
40	40	0.26
41	41	0.0176
42	42	0.354
43	43	0.0214
44	44	0.579
45	45	0.768
46	46	0.22
47	47	0.662
48	48	0.601
49	49	0.129
5	5	0.296
50	50	0.964
51	51	0.497
52	52	0.455
53	53	0.72
54	54	0.483
55	55	0.534
56	56	0.687
57	57	0.87
58	58	0.163
59	59	0.243
6	6	0.896
60	60	0.0604
61	61	0.681
62	62	0.0927
63	63	0.619
64	64	0.491
65	65	0.234
66	66	0.236
67	67	0.491
68	68	0.671
69	69	0.384
7	7	0.249
70	70	0.0653
71	71	0.0299
72	72	0.116
73	73	0.239
74	74	0.0517
75	75	0.195
76	76	0.17
77	77	0.634
78	78	0.138
79	79	0.663
8	8	0.433
80	80	0.144
81	81	0.333
82	82	0.232
83	83	0.0154
84	84	0.14
85	85	0.0303
86	86	0.0656
87	87	0.504
88	88	0.714
89	89	0.209
9	9	0.337
90	90	0.117
91	91	0.441
92	92	0.298
93	93	0.411
94	94	0.0957
95	95	0.522
96	96	0.381
97	97	0.522
98	98	0.179
99	99	0.052

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13532

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011106 human CD14-positive monocytes - treated with Group A streptococci sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000632 (group A streptococci treatment sample)
0011106 (human CD14-positive monocytes - treated with Group A streptococci sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005380
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008148;DRR009020;DRZ000445;DRZ001830;DRZ011795;DRZ013180
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000632,FF:0011106
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.56!3588.31!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.79!613.94!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.69!486.21!TFEC;;chr3:101546827..101546847,+!p2@NFKBIZ!2.45!392.18!NFKBIZ;;chr12:72056800..72056834,+!p1@THAP2!2.41!343.07!THAP2;;chr16:85932760..85932775,+!p1@IRF8!2.36!230.43!IRF8;;chr10:35484053..35484076,+!p1@CREM!2.33!509.31!CREM;;chr12:54778471..54778528,-!p1@ZNF385A!2.30!197.69!ZNF385A;;chr2:70142232..70142251,+!p1@MXD1!2.29!1040.77!MXD1;;chr10:64018918..64018936,+!p2@ZNF365!2.21!160.79!ZNF365;;chr9:102584159..102584174,+!p2@NR4A3!2.20!275.04!NR4A3;;chr9:102584262..102584276,+!p1@NR4A3!2.19!334.41!NR4A3;;chr14:35872453..35872485,-!p2@NFKBIA!2.18!356.23!NFKBIA;;chr10:64576105..64576133,-!p1@EGR2!2.14!274.39!EGR2;;chr19:45971246..45971265,+!p1@FOSB!2.11!2233.02!FOSB;;chr2:157189180..157189290,-!p1@NR4A2!2.08!591.79!NR4A2;;chr20:39317868..39317884,-!p1@MAFB!2.05!1246.17!MAFB;;chr3:101568349..101568365,+!p1@NFKBIZ!2.04!5213.49!NFKBIZ;;chr11:47399947..47399961,-!p3@SPI1!2.03!104.94!SPI1;;chr14:35873947..35873965,-!p1@NFKBIA!2.02!6092.20!NFKBIA;;chr6:106534192..106534224,+!p1@PRDM1!1.98!255.46!PRDM1;;chr2:192015701..192015743,-!p1@STAT4!1.97!123.56!STAT4;;chr21:34442439..34442455,+!p1@OLIG1!1.97!91.79!OLIG1;;chr11:47400062..47400077,-!p2@SPI1!1.96!89.54!SPI1;;chr16:31885093..31885165,+!p1@ZNF267!1.94!1231.73!ZNF267;;chr12:52445218..52445237,+!p1@NR4A1!1.94!1009.00!NR4A1;;chr4:103422499..103422632,+!p1@NFKB1!1.91!1554.26!NFKB1;;chr10:31288398..31288455,-!p2@ZNF438!1.90!90.50!ZNF438;;chrX:153305787..153305807,-!p3@MECP2!1.89!77.34!MECP2;;chr19:54041669..54041697,+!p2@ZNF331!1.89!76.70!ZNF331;;chr9:102584128..102584144,+!p3@NR4A3!1.87!137.04!NR4A3;;chr2:68592394..68592405,+!p2@PLEK!1.86!71.89!PLEK;;chr4:83822199..83822239,+!p2@THAP9!1.85!83.12!THAP9;;chr19:50432132..50432217,+!p2@ATF5!1.84!80.55!ATF5;;chr10:35484090..35484104,+!p6@CREM!1.82!65.79!CREM;;chr1:212782094..212782109,+!p1@ATF3!1.81!1602.08!ATF3;;chr12:72056773..72056796,+!p3@THAP2!1.81!81.84!THAP2;;chr19:54058073..54058088,+!p1@ZNF331!1.81!63.22!ZNF331;;chr8:22550982..22550999,-!p1@EGR3!1.80!169.45!EGR3;;chr22:38597987..38598021,+!p2@MAFF!1.79!348.53!MAFF;;chr12:72056749..72056767,+!p6@THAP2!1.79!66.75!THAP2;;chr11:47400032..47400043,-!p5@SPI1!1.79!60.66!SPI1;;chr19:36391434..36391450,-!p1@NFKBID!1.78!112.33!NFKBID;;chr10:31288370..31288393,-!p3@ZNF438!1.77!58.41!ZNF438;;chr2:61108695..61108753,+!p1@REL!1.76!371.31!REL;;chr10:51572408..51572454,+!p3@NCOA4!1.76!310.34!NCOA4;;chr2:145277640..145277771,-!p1@ZEB2!1.74!674.27!ZEB2;;chr2:145275162..145275202,-!p2@ZEB2!1.73!296.54!ZEB2;;chr11:47399996..47400014,-!p4@SPI1!1.70!48.78!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!1.69!87.93!RUNX3;;chr21:36260295..36260310,-!p3@RUNX1!1.68!74.78!RUNX1;;chr9:102584241..102584261,+!p4@NR4A3!1.66!68.36!NR4A3;;chr6:391743..391759,+!p1@IRF4!1.66!44.29!IRF4;;chr20:48599506..48599526,+!p1@SNAI1!1.65!270.54!SNAI1;;chr6:106534230..106534254,+!p2@PRDM1!1.64!104.94!PRDM1;;chr21:30671690..30671762,+!p2@BACH1!1.62!132.54!BACH1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.59!439.99!ZC3H12A;;chr10:104155480..104155534,+!p2@NFKB2!1.59!236.20!NFKB2;;chr6:144385698..144385742,-!p2@PLAGL1!1.59!45.89!PLAGL1;;chr9:102584278..102584285,+!p5@NR4A3!1.59!37.55!NR4A3;;chr4:106068026..106068084,+!p1@TET2!1.57!312.26!TET2;;chr6:15246200..15246214,+!p2@JARID2!1.57!97.56!JARID2;;chr8:123793988..123794016,+!p1@ZHX2!1.57!62.58!ZHX2;;chr21:34398234..34398250,+!p1@OLIG2!1.56!34.98!OLIG2;;chr12:54778351..54778378,-!p6@ZNF385A!1.56!34.98!ZNF385A;;chr10:51572339..51572376,+!p4@NCOA4!1.55!75.10!NCOA4;;chr10:104155659..104155676,+!p4@NFKB2!1.54!41.72!NFKB2;;chr11:47400045..47400060,-!p6@SPI1!1.54!33.70!SPI1;;chr6:12012170..12012245,+!p1@HIVEP1!1.53!158.86!HIVEP1;;chr9:129567282..129567353,+!p1@ZBTB43!1.52!405.01!ZBTB43;;chr14:35872494..35872511,-!p5@NFKBIA!1.51!41.72!NFKBIA;;chr13:41593425..41593480,-!p1@ELF1!1.50!188.06!ELF1;;chr10:104154246..104154347,+!p3@NFKB2!1.50!180.36!NFKB2;;chr7:50344289..50344323,+!p1@IKZF1!1.50!30.49!IKZF1;;chr21:30671235..30671253,+!p1@BACH1!1.49!360.72!BACH1;;chr6:44233252..44233296,-!p1@NFKBIE!1.49!283.06!NFKBIE;;chr12:96588219..96588263,+!p2@ELK3!1.49!205.72!ELK3;;chr6:12011943..12012015,+!p2@HIVEP1!1.49!92.43!HIVEP1;;chr12:48298765..48298783,-!p2@VDR!1.49!60.66!VDR;;chr7:106809470..106809481,+!p2@HBP1!1.49!41.40!HBP1;;chr21:30673091..30673135,+!p7@BACH1!1.49!30.17!BACH1;;chrX:129244454..129244488,-!p1@ELF4!1.48!200.90!ELF4;;chr4:103423079..103423112,+!p4@NFKB1!1.47!28.24!NFKB1;;chr2:97202480..97202499,+!p1@ARID5A!1.46!270.86!ARID5A;;chr1:38325227..38325246,-!p2@MTF1!1.45!36.91!MTF1;;chr6:126240442..126240459,+!p4@NCOA7!1.45!34.34!NCOA7;;chrX:153305962..153305995,-!p5@MECP2!1.45!27.28!MECP2;;chr12:96588368..96588394,+!p3@ELK3!1.44!69.32!ELK3;;chr8:80679993..80680011,-!p1@HEY1!1.44!37.87!HEY1;;chr2:70165961..70165981,+!p8@MXD1!1.43!25.67!MXD1;;chr4:106066712..106066728,+!p8@TET2!1.43!25.67!TET2;;chr10:35484804..35484902,+!p2@CREM!1.42!95.32!CREM;;chr19:47616992..47617011,-!p4@ZC3H4!1.42!52.63!ZC3H4;;chr2:61108808..61108821,+!p3@REL!1.42!31.77!REL;;chr5:88178983..88179012,-!p1@MEF2C!1.41!182.93!MEF2C;;chr2:145271342..145271377,-!p5@ZEB2!1.41!24.71!ZEB2;;chr10:35416142..35416169,+!p3@CREM!1.40!62.26!CREM;;chr14:35872962..35873025,-!p3@NFKBIA!1.40!60.01!NFKBIA;;chr18:3449720..3449749,+!p2@TGIF1!1.40!50.39!TGIF1;;chr2:70314240..70314256,+!p4@PCBP1!1.40!49.42!PCBP1;;chr6:12012249..12012266,+!p5@HIVEP1!1.40!41.40!HIVEP1;;chr4:83822246..83822277,+!p5@THAP9!1.40!24.39!THAP9;;chr20:48807351..48807384,+!p1@CEBPB!1.39!2286.62!CEBPB;;chr12:11802753..11802834,+!p2@ETV6!1.39!113.29!ETV6;;chr6:126240380..126240430,+!p2@NCOA7!1.39!60.33!NCOA7;;chr11:615942..615957,-!p1@IRF7!1.38!211.81!IRF7;;chr19:19496539..19496576,+!p8@GATAD2A!1.38!39.47!GATAD2A;;chr4:83821967..83821998,+!p3@THAP9!1.37!27.28!THAP9;;chr3:12329397..12329433,+!p2@PPARG!1.36!49.10!PPARG;;chr19:45251395..45251432,+!p8@BCL3!1.36!22.14!BCL3;;chr2:231090471..231090504,+!p2@SP140!1.36!21.82!SP140;;chr2:238600998..238601013,+!p5@LRRFIP1!1.36!21.82!LRRFIP1;;chr3:170075436..170075520,+!p1@SKIL!1.35!451.23!SKIL;;chr2:70166156..70166179,+!p4@MXD1!1.35!21.50!MXD1;;chr2:68615063..68615089,+!p4@PLEK!1.35!21.18!PLEK;;chr2:28615716..28615733,+!p1@FOSL2!1.34!948.02!FOSL2;;chr3:39195037..39195069,-!p2@CSRNP1!1.34!127.41!CSRNP1;;chr3:150126101..150126118,+!p6@TSC22D2!1.34!33.70!TSC22D2;;chr5:142782823..142782854,-!p3@NR3C1!1.34!29.85!NR3C1;;chr4:106066776..106066791,+!p9@TET2!1.34!20.86!TET2;;chr12:96588279..96588299,+!p4@ELK3!1.32!92.75!ELK3;;chr19:45252008..45252024,+!p2@BCL3!1.32!65.15!BCL3;;chr2:238600933..238600985,+!p3@LRRFIP1!1.31!102.70!LRRFIP1;;chr1:156470515..156470542,-!p2@MEF2D!1.31!99.17!MEF2D;;chr2:61108771..61108789,+!p4@REL!1.31!29.53!REL;;chr17:38497662..38497713,+!p4@RARA!1.31!22.47!RARA;;chr11:47399920..47399931,-!p7@SPI1!1.31!19.58!SPI1;;chr4:106066730..106066754,+!p6@TET2!1.31!19.58!TET2;;chr10:3827371..3827386,-!p2@KLF6!1.30!154.69!KLF6;;chr11:65430554..65430579,-!p3@RELA!1.30!47.18!RELA;;chr21:40177845..40177863,+!p1@ETS2!1.29!1056.50!ETS2;;chr18:3448455..3448480,+!p5@TGIF1!1.29!33.70!TGIF1;;chr2:191885737..191885750,-!p4@STAT1!1.29!18.29!STAT1;;chr5:71803177..71803255,-!p1@ZNF366!1.29!18.29!ZNF366;;chr7:17338266..17338282,+!p1@AHR!1.28!191.59!AHR;;chr22:38598086..38598105,+!p1@MAFF!1.28!189.35!MAFF;;chr1:157108130..157108173,-!p1@ETV3!1.28!128.69!ETV3;;chr14:35872926..35872951,-!p4@NFKBIA!1.27!24.71!NFKBIA;;chr18:3449618..3449634,+!p13@TGIF1!1.27!21.82!TGIF1;;chr2:73520667..73520683,-!p1@EGR4!1.27!17.65!EGR4;;chr4:83822294..83822306,+!p8@THAP9!1.27!17.65!THAP9;;chr1:221052776..221052799,+!p1@HLX!1.26!30.49!HLX;;chr6:126240463..126240489,+!p6@NCOA7!1.26!19.26!NCOA7;;chr21:30672433..30672464,+!p6@BACH1!1.26!17.33!BACH1;;chrX:153305741..153305753,-!p4@MECP2!1.26!17.33!MECP2;;chr12:72056706..72056717,+!p10@THAP2!1.25!16.69!THAP2;;chr6:15246261..15246312,+!p1@JARID2!1.24!390.57!JARID2;;chr21:36421535..36421610,-!p2@RUNX1!1.24!58.09!RUNX1;;chr3:12330560..12330579,+!p1@PPARG!1.24!18.61!PPARG;;chr7:106810484..106810494,+!p4@HBP1!1.24!16.37!HBP1;;chr7:115670792..115670797,-!p2@TFEC!1.23!16.05!TFEC;;chr18:77155922..77155939,+!p1@NFATC1!1.22!42.04!NFATC1;;chr8:116681123..116681143,-!p4@TRPS1!1.21!29.20!TRPS1;;chr20:48807456..48807475,+!p3@CEBPB!1.21!28.88!CEBPB;;chr8:53373491..53373506,-!p4@ST18!1.21!15.40!ST18;;chr2:68615031..68615055,+!p3@PLEK!1.21!15.08!PLEK;;chr13:41593392..41593403,-!p7@ELF1!1.21!15.08!ELF1;;chr19:45250948..45250998,+!p3@BCL3!1.20!37.23!BCL3;;chr7:44924939..44924993,-!p2@PURB!1.20!28.56!PURB;;chr2:70142189..70142223,+!p2@MXD1!1.19!102.70!MXD1;;chr12:48298785..48298828,-!p1@VDR!1.19!77.02!VDR;;chr8:116681150..116681164,-!p5@TRPS1!1.19!27.92!TRPS1;;chr2:70166988..70167021,+!p7@MXD1!1.19!14.44!MXD1;;chr21:40177892..40177903,+!p2@ETS2!1.18!55.84!ETS2;;chr1:221052733..221052749,+!p2@HLX!1.18!18.29!HLX;;chr19:50432104..50432126,+!p6@ATF5!1.18!14.12!ATF5;;chr10:31288329..31288353,-!p7@ZNF438!1.18!14.12!ZNF438;;chr5:137801160..137801176,+!p1@EGR1!1.17!1348.22!EGR1;;chr14:64971014..64971044,+!p4@ZBTB1!1.17!22.79!ZBTB1;;chr2:231090433..231090469,+!p1@SP140!1.17!13.80!SP140;;chr19:19496624..19496660,+!p3@GATAD2A!1.16!60.98!GATAD2A;;chr2:185463247..185463263,+!p1@ZNF804A!1.16!23.75!ZNF804A;;chr1:156470494..156470505,-!p3@MEF2D!1.16!19.58!MEF2D;;chrX:129244430..129244442,-!p5@ELF4!1.16!13.48!ELF4;;chr20:48807648..48807671,+!p9@CEBPB!1.15!19.26!CEBPB;;chr2:70167033..70167069,+!p11@MXD1!1.15!13.16!MXD1;;chr12:52448338..52448401,+!p7@NR4A1!1.15!13.16!NR4A1;;chr17:38474489..38474548,+!p1@RARA!1.14!401.16!RARA;;chr2:70167296..70167306,+!p3@MXD1!1.14!19.58!MXD1;;chr3:5022272..5022321,+!p7@BHLHE40!1.14!12.84!BHLHE40;;chr1:25256439..25256476,-!p3@RUNX3!1.14!12.84!RUNX3;;chr19:12902289..12902307,+!p1@JUNB!1.13!2831.56!JUNB;;chr14:75745523..75745537,+!p1@FOS!1.13!1485.90!FOS;;chr10:104155455..104155479,+!p1@NFKB2!1.13!182.93!NFKB2;;chr2:145277882..145277967,-!p3@ZEB2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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=FF:0000625,FF:0000632,FF:0011106,FF:11874-125C2
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor2.CNhs13532.11874-125C2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor2.CNhs13532.11874-125C2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor2.CNhs13532.11874-125C2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor2.CNhs13532.11874-125C2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Group%2520A%2520streptococci%252c%2520donor2.CNhs13532.11874-125C2.hg38.nobarcode.ctss.bed.gz
 |id=FF:11874-125C2
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0011106
+|is_a=EFO:0002091;;FF:0011106
+|is_obsolete=
+|library_id=CNhs13532
+|library_id_phase_based=2:CNhs13532
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11874
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11874
 |name=CD14+ monocytes - treated with Group A streptococci, donor2
 |namespace=
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13532,LSID1029,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
 |rna_catalog_number=
@@ Line 57: / Line 79: @@
 |rna_weight_ug=1.481715
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+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 100: @@
 |sample_tissue=
 |top_motifs=FOSL2:6.31506769825;FOS_FOS{B,L1}_JUN{B,D}:6.23671228828;BACH2:6.03785764514;HLF:6.03256806669;NFE2:5.98013821252;NFE2L2:5.18704263302;CEBPA,B_DDIT3:5.15980523859;NFIL3:4.87889487941;IRF7:4.53589225287;PAX2:4.52180646781;NFKB1_REL_RELA:4.43667352622;FOXP3:4.21227461613;IRF1,2:4.00902434751;SPIB:3.87414304882;NANOG{mouse}:3.6657934836;SREBF1,2:3.60895037227;NFATC1..3:3.5950497125;STAT5{A,B}:3.43353684335;PAX8:3.39392702689;DMAP1_NCOR{1,2}_SMARC:3.36027184783;HSF1,2:3.35043292005;SPI1:3.32701258979;ATF5_CREB3:3.27534841003;ETS1,2:3.18767955196;NR1H4:3.15703611906;JUN:3.07876525552;NFE2L1:2.92270937996;RUNX1..3:2.91483007501;ATF6:2.90024935751;ATF4:2.83531406022;CREB1:2.64421007818;ATF2:2.63534023;MAFB:2.5555259732;PAX3,7:2.41559440896;HOX{A5,B5}:1.85281450224;FOXN1:1.75669671792;STAT2,4,6:1.7123703874;TGIF1:1.68542136838;XBP1:1.65352515581;HMGA1,2:1.41564337087;HOXA9_MEIS1:1.326183772;FOXO1,3,4:1.28841265734;ELF1,2,4:1.24728842449;IKZF1:1.0170509353;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.94818976141;ALX4:0.855805972052;PDX1:0.842239589452;PRDM1:0.7275939955;RXRA_VDR{dimer}:0.718746659506;EP300:0.679544487717;CDX1,2,4:0.663029893149;NANOG:0.645187423905;NR3C1:0.641343113312;PPARG:0.504931396943;SMAD1..7,9:0.498103401154;RORA:0.494634744302;GLI1..3:0.456714925806;PAX1,9:0.426279418951;SRF:0.421601943509;HMX1:0.389911467517;HIF1A:0.362097414237;TBP:0.271724469351;OCT4_SOX2{dimer}:0.210898072977;ESR1:0.132971227589;SOX2:0.0924936443119;VSX1,2:0.0750792642253;POU2F1..3:0.0443477111343;BPTF:0.0400568641508;RBPJ:-0.0268723809789;EN1,2:-0.0412342637543;MEF2{A,B,C,D}:-0.106359124917;POU5F1:-0.151128854249;AHR_ARNT_ARNT2:-0.158604352014;POU3F1..4:-0.162688790424;EGR1..3:-0.204767932943;ZBTB16:-0.220039042405;HBP1_HMGB_SSRP1_UBTF:-0.332379566432;TLX2:-0.365064880641;STAT1,3:-0.369194791006;HES1:-0.462467161686;GATA4:-0.524155177544;FOXM1:-0.561263367277;IKZF2:-0.579146308754;PAX4:-0.625331948077;FOX{D1,D2}:-0.630094122328;MYB:-0.636714699845;RFX2..5_RFXANK_RFXAP:-0.648708143855;SPZ1:-0.712300493575;TFCP2:-0.738095057206;NFIX:-0.787536747546;DBP:-0.823742167552;NHLH1,2:-0.912400097489;MZF1:-0.931909419237;NR6A1:-1.03369935956;PRRX1,2:-1.05646865228;NKX2-1,4:-1.08507254384;FOXD3:-1.14289510963;TBX4,5:-1.19817261268;PITX1..3:-1.1982002629;MED-1{core}:-1.20195893991;ESRRA:-1.27927258424;PAX6:-1.28513020115;MYFfamily:-1.3000191974;TAL1_TCF{3,4,12}:-1.31940014821;CRX:-1.32027635951;HNF1A:-1.33229826601;MTE{core}:-1.36263901891;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.40676387154;NKX2-3_NKX2-5:-1.40834971605;SOX5:-1.41425436595;ZNF238:-1.44886234836;T:-1.45329180286;GCM1,2:-1.46455822991;TEF:-1.46813941758;ALX1:-1.48469776899;ADNP_IRX_SIX_ZHX:-1.48498369066;HOX{A4,D4}:-1.48584108283;HNF4A_NR2F1,2:-1.49631790153;TFDP1:-1.53823011647;FOX{F1,F2,J1}:-1.54381023137;TFAP4:-1.54784755784;REST:-1.5728431315;GZF1:-1.57590878273;NKX3-1:-1.59317234129;GTF2A1,2:-1.6245653357;GATA6:-1.65203874858;CUX2:-1.6577985666;E2F1..5:-1.6663811766;ZFP161:-1.67984794431;TEAD1:-1.70503597758;ZNF384:-1.70566951155;FOXL1:-1.74154465072;ZBTB6:-1.78012242227;BREu{core}:-1.80076099703;NKX3-2:-1.80928389318;NKX2-2,8:-1.88690576979;PATZ1:-1.89424085566;RXR{A,B,G}:-1.89630664438;GTF2I:-1.95844827041;TFAP2B:-1.99413177207;FOXA2:-2.0171133776;TP53:-2.02813353286;MYBL2:-2.03848130661;SP1:-2.07391243882;POU1F1:-2.125847067;RFX1:-2.13901092596;SOX{8,9,10}:-2.13986434489;MTF1:-2.15499117195;POU6F1:-2.15749549817;CDC5L:-2.22973660008;GFI1B:-2.26577310217;ELK1,4_GABP{A,B1}:-2.26897887925;MAZ:-2.28755325312;TLX1..3_NFIC{dimer}:-2.30628037244;NKX6-1,2:-2.33140169985;FOX{I1,J2}:-2.40790272813;FOXP1:-2.42230823433;HIC1:-2.46712411382;SOX17:-2.47024469362;ARID5B:-2.49065019152;ZEB1:-2.49476378101;TFAP2{A,C}:-2.51197049418;SNAI1..3:-2.5526882499;ZNF148:-2.57820821175;RREB1:-2.60431292381;PBX1:-2.63849352645;ZIC1..3:-2.70281707969;KLF4:-2.72583348567;ONECUT1,2:-2.73350362153;NFY{A,B,C}:-2.7624205791;EVI1:-2.81373853684;bHLH_family:-2.83103077846;XCPE1{core}:-2.88096386273;HOX{A6,A7,B6,B7}:-2.89209315476;NR5A1,2:-3.00693624655;EBF1:-3.05326888635;AIRE:-3.07460756047;GFI1:-3.1715865748;UFEwm:-3.19972867824;NRF1:-3.29657946488;LMO2:-3.30396251301;MYOD1:-3.33344467894;AR:-3.33827528279;ZNF423:-3.44311928295;LHX3,4:-3.48103200873;PAX5:-3.52837143127;LEF1_TCF7_TCF7L1,2:-3.72721375392;HAND1,2:-3.80077881271;FOXQ1:-3.80780873307;YY1:-3.92075328151;ZNF143:-4.15136634084;TOPORS:-5.41544898734
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11874-125C2;search_select_hide=table117:FF:11874-125C2
 }}

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FF:11874-125C2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:25, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0