FF:11876-125C4: Difference between revisions

Latest revision as of 18:25, 4 June 2020

Name:	CD14+ monocytes - treated with Salmonella, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13485
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	male
age	51
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D4-7
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004857

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13485		CAGE		DRX008154		DRR009026

Accession ID Hg19

Library id		BAM		CTSS
CNhs13485		DRZ000451		DRZ001836

Accession ID Hg38

Library id		BAM		CTSS
CNhs13485		DRZ011801		DRZ013186

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.743
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0802
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.644
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.493
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.195
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.644
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.108
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.6
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.329
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0.514
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.384
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.489
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.159
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.786
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.329
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.329
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.421
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.329
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.246
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.584
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.782
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.329
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.708
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.584
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.429
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.936
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.556
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.612
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.697
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.392
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.195
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.705
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.908
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.195
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.536
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.195
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.514
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.329
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.329
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.657
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.195
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.195
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.195
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.195
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.195
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13485

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.32847e-6
MA0003.1	MA0003.1	0.649
MA0004.1	MA0004.1	0.454
MA0006.1	MA0006.1	0.956
MA0007.1	MA0007.1	0.854
MA0009.1	MA0009.1	0.339
MA0014.1	MA0014.1	0.935
MA0017.1	MA0017.1	0.108
MA0018.2	MA0018.2	0.113
MA0019.1	MA0019.1	0.556
MA0024.1	MA0024.1	0.00266
MA0025.1	MA0025.1	0.00553
MA0027.1	MA0027.1	0.616
MA0028.1	MA0028.1	0.0555
MA0029.1	MA0029.1	0.167
MA0030.1	MA0030.1	0.0638
MA0031.1	MA0031.1	0.221
MA0035.2	MA0035.2	0.33
MA0038.1	MA0038.1	0.457
MA0039.2	MA0039.2	0.545
MA0040.1	MA0040.1	0.433
MA0041.1	MA0041.1	0.401
MA0042.1	MA0042.1	0.852
MA0043.1	MA0043.1	8.04194e-8
MA0046.1	MA0046.1	0.0189
MA0047.2	MA0047.2	0.255
MA0048.1	MA0048.1	0.667
MA0050.1	MA0050.1	3.01727e-12
MA0051.1	MA0051.1	2.08086e-7
MA0052.1	MA0052.1	0.265
MA0055.1	MA0055.1	0.614
MA0057.1	MA0057.1	0.453
MA0058.1	MA0058.1	0.224
MA0059.1	MA0059.1	0.267
MA0060.1	MA0060.1	1.19623e-9
MA0061.1	MA0061.1	2.40271e-18
MA0062.2	MA0062.2	0.961
MA0065.2	MA0065.2	0.0277
MA0066.1	MA0066.1	0.102
MA0067.1	MA0067.1	1.67368e-5
MA0068.1	MA0068.1	0.312
MA0069.1	MA0069.1	0.798
MA0070.1	MA0070.1	0.0307
MA0071.1	MA0071.1	0.401
MA0072.1	MA0072.1	0.595
MA0073.1	MA0073.1	0.425
MA0074.1	MA0074.1	0.134
MA0076.1	MA0076.1	0.078
MA0077.1	MA0077.1	0.357
MA0078.1	MA0078.1	0.599
MA0079.2	MA0079.2	0.227
MA0080.2	MA0080.2	7.19344e-12
MA0081.1	MA0081.1	3.7545e-4
MA0083.1	MA0083.1	0.488
MA0084.1	MA0084.1	0.612
MA0087.1	MA0087.1	0.924
MA0088.1	MA0088.1	0.37
MA0090.1	MA0090.1	0.41
MA0091.1	MA0091.1	0.851
MA0092.1	MA0092.1	0.352
MA0093.1	MA0093.1	0.47
MA0099.2	MA0099.2	2.57155e-45
MA0100.1	MA0100.1	0.52
MA0101.1	MA0101.1	1.65064e-21
MA0102.2	MA0102.2	1.16203e-9
MA0103.1	MA0103.1	0.0778
MA0104.2	MA0104.2	0.518
MA0105.1	MA0105.1	2.41957e-20
MA0106.1	MA0106.1	0.816
MA0107.1	MA0107.1	4.76023e-27
MA0108.2	MA0108.2	0.435
MA0111.1	MA0111.1	0.606
MA0112.2	MA0112.2	5.21024e-4
MA0113.1	MA0113.1	0.964
MA0114.1	MA0114.1	0.122
MA0115.1	MA0115.1	0.824
MA0116.1	MA0116.1	3.9741e-4
MA0117.1	MA0117.1	0.0534
MA0119.1	MA0119.1	0.165
MA0122.1	MA0122.1	0.616
MA0124.1	MA0124.1	0.391
MA0125.1	MA0125.1	0.32
MA0131.1	MA0131.1	0.333
MA0135.1	MA0135.1	0.571
MA0136.1	MA0136.1	9.09405e-12
MA0137.2	MA0137.2	0.0637
MA0138.2	MA0138.2	0.322
MA0139.1	MA0139.1	0.689
MA0140.1	MA0140.1	0.402
MA0141.1	MA0141.1	0.138
MA0142.1	MA0142.1	0.415
MA0143.1	MA0143.1	0.89
MA0144.1	MA0144.1	0.0271
MA0145.1	MA0145.1	0.492
MA0146.1	MA0146.1	0.412
MA0147.1	MA0147.1	0.635
MA0148.1	MA0148.1	0.507
MA0149.1	MA0149.1	0.195
MA0150.1	MA0150.1	2.68334e-23
MA0152.1	MA0152.1	0.875
MA0153.1	MA0153.1	0.00192
MA0154.1	MA0154.1	2.84265e-4
MA0155.1	MA0155.1	0.988
MA0156.1	MA0156.1	9.7226e-8
MA0157.1	MA0157.1	0.794
MA0159.1	MA0159.1	0.0384
MA0160.1	MA0160.1	0.067
MA0162.1	MA0162.1	0.884
MA0163.1	MA0163.1	2.10327e-8
MA0164.1	MA0164.1	0.477
MA0258.1	MA0258.1	0.0241
MA0259.1	MA0259.1	0.537

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13485

Novel motif	Logo	P-value
1	1	0.112
10	10	0.0294
100	100	0.767
101	101	0.903
102	102	0.893
103	103	0.291
104	104	0.572
105	105	0.14
106	106	1.08982e-4
107	107	0.136
108	108	0.754
109	109	0.371
11	11	0.175
110	110	0.214
111	111	0.106
112	112	0.428
113	113	0.48
114	114	0.0304
115	115	0.242
116	116	0.962
117	117	0.0704
118	118	0.22
119	119	0.152
12	12	0.288
120	120	0.986
121	121	0.774
122	122	0.625
123	123	0.513
124	124	0.577
125	125	0.215
126	126	0.235
127	127	0.573
128	128	0.0475
129	129	0.459
13	13	0.139
130	130	0.245
131	131	0.793
132	132	0.109
133	133	0.782
134	134	0.542
135	135	0.724
136	136	0.801
137	137	0.0269
138	138	0.387
139	139	0.129
14	14	0.563
140	140	0.31
141	141	0.24
142	142	0.167
143	143	0.026
144	144	0.487
145	145	0.435
146	146	0.631
147	147	0.743
148	148	0.00489
149	149	0.793
15	15	0.183
150	150	0.282
151	151	0.574
152	152	0.223
153	153	0.645
154	154	0.615
155	155	0.99
156	156	0.862
157	157	0.443
158	158	0.0309
159	159	0.245
16	16	0.366
160	160	0.387
161	161	0.474
162	162	0.172
163	163	0.118
164	164	0.107
165	165	0.17
166	166	0.874
167	167	0.322
168	168	0.119
169	169	0.0253
17	17	0.202
18	18	0.0895
19	19	0.593
2	2	0.6
20	20	0.205
21	21	0.66
22	22	0.32
23	23	0.0296
24	24	0.387
25	25	0.532
26	26	0.0621
27	27	0.567
28	28	0.327
29	29	0.355
3	3	0.131
30	30	0.464
31	31	0.773
32	32	0.543
33	33	0.246
34	34	0.663
35	35	0.13
36	36	0.0945
37	37	0.067
38	38	0.385
39	39	0.778
4	4	0.943
40	40	0.234
41	41	0.0165
42	42	0.341
43	43	0.0182
44	44	0.605
45	45	0.606
46	46	0.174
47	47	0.67
48	48	0.55
49	49	0.132
5	5	0.379
50	50	0.957
51	51	0.535
52	52	0.295
53	53	0.575
54	54	0.446
55	55	0.67
56	56	0.715
57	57	0.82
58	58	0.173
59	59	0.183
6	6	0.805
60	60	0.0395
61	61	0.653
62	62	0.085
63	63	0.535
64	64	0.538
65	65	0.195
66	66	0.347
67	67	0.501
68	68	0.683
69	69	0.318
7	7	0.299
70	70	0.0433
71	71	0.0322
72	72	0.244
73	73	0.179
74	74	0.0341
75	75	0.184
76	76	0.157
77	77	0.405
78	78	0.128
79	79	0.926
8	8	0.402
80	80	0.218
81	81	0.347
82	82	0.231
83	83	0.0263
84	84	0.0432
85	85	0.0233
86	86	0.0312
87	87	0.472
88	88	0.741
89	89	0.146
9	9	0.292
90	90	0.0988
91	91	0.387
92	92	0.247
93	93	0.786
94	94	0.108
95	95	0.652
96	96	0.349
97	97	0.589
98	98	0.173
99	99	0.0659

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13485

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011109 human CD14-positive monocytes - treated with Salmonella sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000633 (Salmonella treatment sample)
0011109 (human CD14-positive monocytes - treated with Salmonella sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00004857
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008154;DRR009026;DRZ000451;DRZ001836;DRZ011801;DRZ013186
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000633,FF:0011109
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.59!3914.96!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.96!914.06!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.84!684.83!TFEC;;chr16:85932760..85932775,+!p1@IRF8!2.62!417.03!IRF8;;chr21:34442439..34442455,+!p1@OLIG1!2.30!197.45!OLIG1;;chr11:47400062..47400077,-!p2@SPI1!2.27!187.24!SPI1;;chr10:64018918..64018936,+!p2@ZNF365!2.24!171.92!ZNF365;;chr2:192015701..192015743,-!p1@STAT4!2.17!199.15!STAT4;;chr14:35873947..35873965,-!p1@NFKBIA!2.10!7265.94!NFKBIA;;chr12:72056800..72056834,+!p1@THAP2!2.10!165.11!THAP2;;chr12:54778471..54778528,-!p1@ZNF385A!2.10!124.26!ZNF385A;;chr12:72056749..72056767,+!p6@THAP2!2.09!136.17!THAP2;;chr2:70142232..70142251,+!p1@MXD1!2.08!640.01!MXD1;;chr11:47399947..47399961,-!p3@SPI1!2.08!120.29!SPI1;;chr14:35872453..35872485,-!p2@NFKBIA!2.07!279.15!NFKBIA;;chr3:101546827..101546847,+!p2@NFKBIZ!2.06!157.73!NFKBIZ;;chr2:61108695..61108753,+!p1@REL!2.05!721.71!REL;;chr4:103422499..103422632,+!p1@NFKB1!2.03!2056.20!NFKB1;;chr20:39317868..39317884,-!p1@MAFB!2.02!1155.20!MAFB;;chr10:51572408..51572454,+!p3@NCOA4!1.95!489.09!NCOA4;;chr2:145275162..145275202,-!p2@ZEB2!1.94!476.04!ZEB2;;chr6:106534192..106534224,+!p1@PRDM1!1.94!233.20!PRDM1;;chr2:68592394..68592405,+!p2@PLEK!1.94!85.11!PLEK;;chr10:64576105..64576133,-!p1@EGR2!1.93!167.95!EGR2;;chr10:31288398..31288455,-!p2@ZNF438!1.92!95.89!ZNF438;;chr10:104155480..104155534,+!p2@NFKB2!1.91!491.36!NFKB2;;chr10:104155659..104155676,+!p4@NFKB2!1.91!99.86!NFKB2;;chr11:47400032..47400043,-!p5@SPI1!1.91!79.43!SPI1;;chr12:72056773..72056796,+!p3@THAP2!1.86!91.35!THAP2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.85!3423.04!NFKBIZ;;chr19:50432132..50432217,+!p2@ATF5!1.84!80.00!ATF5;;chr11:47399996..47400014,-!p4@SPI1!1.84!67.52!SPI1;;chr18:77155922..77155939,+!p1@NFATC1!1.83!176.46!NFATC1;;chr8:123793988..123794016,+!p1@ZHX2!1.83!115.75!ZHX2;;chr21:30671690..30671762,+!p2@BACH1!1.81!208.80!BACH1;;chr9:102584159..102584174,+!p2@NR4A3!1.81!112.34!NR4A3;;chr10:35484053..35484076,+!p1@CREM!1.80!150.92!CREM;;chr1:38325227..38325246,-!p2@MTF1!1.80!82.84!MTF1;;chr2:61108808..61108821,+!p3@REL!1.77!72.63!REL;;chr16:31885093..31885165,+!p1@ZNF267!1.76!819.30!ZNF267;;chr10:51572339..51572376,+!p4@NCOA4!1.76!124.82!NCOA4;;chr10:31288370..31288393,-!p3@ZNF438!1.75!55.60!ZNF438;;chr1:37940170..37940190,+!p1@ZC3H12A!1.74!628.10!ZC3H12A;;chr10:104154246..104154347,+!p3@NFKB2!1.73!304.69!NFKB2;;chr11:65430554..65430579,-!p3@RELA!1.73!128.80!RELA;;chr22:38597987..38598021,+!p2@MAFF!1.72!296.18!MAFF;;chrX:153305787..153305807,-!p3@MECP2!1.72!51.63!MECP2;;chr9:102584262..102584276,+!p1@NR4A3!1.68!101.56!NR4A3;;chr9:102584128..102584144,+!p3@NR4A3!1.68!87.38!NR4A3;;chr11:47400045..47400060,-!p6@SPI1!1.67!45.96!SPI1;;chr2:68615063..68615089,+!p4@PLEK!1.66!44.26!PLEK;;chr5:142782823..142782854,-!p3@NR3C1!1.65!61.28!NR3C1;;chr21:30673091..30673135,+!p7@BACH1!1.64!42.55!BACH1;;chr2:145277640..145277771,-!p1@ZEB2!1.63!533.91!ZEB2;;chr21:30671235..30671253,+!p1@BACH1!1.63!500.43!BACH1;;chr6:12012170..12012245,+!p1@HIVEP1!1.63!202.56!HIVEP1;;chr6:12011943..12012015,+!p2@HIVEP1!1.63!128.80!HIVEP1;;chr7:50344289..50344323,+!p1@IKZF1!1.63!41.99!IKZF1;;chr6:106534230..106534254,+!p2@PRDM1!1.62!98.73!PRDM1;;chr11:615942..615957,-!p1@IRF7!1.61!361.42!IRF7;;chr19:36391434..36391450,-!p1@NFKBID!1.61!76.03!NFKBID;;chr1:157108130..157108173,-!p1@ETV3!1.59!261.56!ETV3;;chr6:144385698..144385742,-!p2@PLAGL1!1.59!45.39!PLAGL1;;chr7:17338266..17338282,+!p1@AHR!1.58!379.01!AHR;;chr4:81104895..81104920,+!p2@PRDM8!1.56!52.20!PRDM8;;chr21:40177845..40177863,+!p1@ETS2!1.53!1865.00!ETS2;;chr6:44233252..44233296,-!p1@NFKBIE!1.53!306.96!NFKBIE;;chr6:15246200..15246214,+!p2@JARID2!1.52!86.24!JARID2;;chr4:103423079..103423112,+!p4@NFKB1!1.52!31.77!NFKB1;;chr17:40440225..40440268,+!p3@STAT5A!1.50!38.58!STAT5A;;chr7:115670792..115670797,-!p2@TFEC!1.50!30.64!TFEC;;chrX:129244454..129244488,-!p1@ELF4!1.49!208.23!ELF4;;chr14:35872962..35873025,-!p3@NFKBIA!1.49!73.19!NFKBIA;;chr6:12012249..12012266,+!p5@HIVEP1!1.49!51.63!HIVEP1;;chr19:19496539..19496576,+!p8@GATAD2A!1.49!51.06!GATAD2A;;chr21:36260295..36260310,-!p3@RUNX1!1.49!47.09!RUNX1;;chr14:35872926..35872951,-!p4@NFKBIA!1.49!41.99!NFKBIA;;chr19:45252008..45252024,+!p2@BCL3!1.47!91.35!BCL3;;chr12:48298765..48298783,-!p2@VDR!1.47!58.44!VDR;;chr19:45971246..45971265,+!p1@FOSB!1.45!482.28!FOSB;;chr11:65430535..65430549,-!p4@RELA!1.45!31.77!RELA;;chr4:103446567..103446592,+!p15@NFKB1!1.45!27.23!NFKB1;;chr8:22550982..22550999,-!p1@EGR3!1.43!70.92!EGR3;;chr2:68615031..68615055,+!p3@PLEK!1.43!26.10!PLEK;;chr1:212782094..212782109,+!p1@ATF3!1.42!661.57!ATF3;;chr8:81397820..81397836,+!p2@ZBTB10!1.42!31.21!ZBTB10;;chr6:391743..391759,+!p1@IRF4!1.42!25.53!IRF4;;chr8:72755203..72755239,-!p10@MSC!1.42!25.53!MSC;;chr9:129567282..129567353,+!p1@ZBTB43!1.41!312.63!ZBTB43;;chr20:48599506..48599526,+!p1@SNAI1!1.41!152.06!SNAI1;;chr17:38497662..38497713,+!p4@RARA!1.41!28.37!RARA;;chr21:30672433..30672464,+!p6@BACH1!1.41!24.96!BACH1;;chr20:48807351..48807384,+!p1@CEBPB!1.40!2370.54!CEBPB;;chr3:12329397..12329433,+!p2@PPARG!1.40!53.90!PPARG;;chr3:37217736..37217753,-!p2@LRRFIP2!1.39!95.89!LRRFIP2;;chr2:185463247..185463263,+!p1@ZNF804A!1.39!41.42!ZNF804A;;chr4:103446513..103446530,+!p19@NFKB1!1.39!23.83!NFKB1;;chr3:170075436..170075520,+!p1@SKIL!1.38!478.31!SKIL;;chr13:41593425..41593480,-!p1@ELF1!1.38!141.28!ELF1;;chr14:64970670..64970712,-!p3@ZBTB25!1.38!49.36!ZBTB25;;chr7:17338324..17338341,+!p3@AHR!1.37!74.33!AHR;;chr1:221052776..221052799,+!p1@HLX!1.37!40.28!HLX;;chr2:61108771..61108789,+!p4@REL!1.36!32.91!REL;;chr8:72756637..72756664,-!p3@MSC!1.36!24.96!MSC;;chr14:35872414..35872425,-!p7@NFKBIA!1.36!24.40!NFKBIA;;chr14:35872494..35872511,-!p5@NFKBIA!1.35!28.37!NFKBIA;;chr11:47399920..47399931,-!p7@SPI1!1.35!21.56!SPI1;;chr12:72056706..72056717,+!p10@THAP2!1.35!21.56!THAP2;;chr3:39195037..39195069,-!p2@CSRNP1!1.34!124.82!CSRNP1;;chr6:143266297..143266356,-!p1@HIVEP2!1.34!99.29!HIVEP2;;chr19:45250948..45250998,+!p3@BCL3!1.34!51.63!BCL3;;chr16:69599899..69599919,+!p2@NFAT5!1.33!222.98!NFAT5;;chr12:11802753..11802834,+!p2@ETV6!1.33!98.16!ETV6;;chr17:40440359..40440386,+!p4@STAT5A!1.33!20.43!STAT5A;;chr4:106068026..106068084,+!p1@TET2!1.32!175.32!TET2;;chr1:38325256..38325280,-!p1@MTF1!1.31!117.45!MTF1;;chr4:81104865..81104886,+!p6@PRDM8!1.31!20.99!PRDM8;;chr14:35872542..35872553,-!p10@NFKBIA!1.31!19.29!NFKBIA;;chr10:104155455..104155479,+!p1@NFKB2!1.30!266.10!NFKB2;;chr1:120190786..120190915,-!p1@ZNF697!1.30!135.04!ZNF697;;chr2:97202480..97202499,+!p1@ARID5A!1.29!184.40!ARID5A;;chr12:96588219..96588263,+!p2@ELK3!1.28!127.66!ELK3;;chr8:80679993..80680011,-!p1@HEY1!1.28!26.10!HEY1;;chr2:238600998..238601013,+!p5@LRRFIP1!1.28!18.16!LRRFIP1;;chr10:3827371..3827386,-!p2@KLF6!1.27!143.55!KLF6;;chr2:238600933..238600985,+!p3@LRRFIP1!1.27!94.19!LRRFIP1;;chr2:145277882..145277967,-!p3@ZEB2!1.27!30.07!ZEB2;;chr11:34642612..34642646,+!p1@EHF!1.27!17.59!EHF;;chr19:45251395..45251432,+!p8@BCL3!1.27!17.59!BCL3;;chr21:40177892..40177903,+!p2@ETS2!1.26!68.65!ETS2;;chr1:25256756..25256774,-!p1@RUNX3!1.26!32.34!RUNX3;;chr1:221052733..221052749,+!p2@HLX!1.26!22.13!HLX;;chr8:81397846..81397860,+!p3@ZBTB10!1.26!21.56!ZBTB10;;chr18:3449618..3449634,+!p13@TGIF1!1.26!20.99!TGIF1;;chr11:65430586..65430593,-!p5@RELA!1.26!19.29!RELA;;chrX:153305741..153305753,-!p4@MECP2!1.26!17.02!MECP2;;chr7:106809470..106809481,+!p2@HBP1!1.25!23.26!HBP1;;chr17:38497715..38497734,+!p8@RARA!1.24!16.45!RARA;;chr8:72756063..72756125,-!p1@MSC!1.23!32.34!MSC;;chr2:70142189..70142223,+!p2@MXD1!1.21!106.67!MXD1;;chr8:72756267..72756296,-!p4@MSC!1.21!22.13!MSC;;chr3:187454281..187454300,-!p8@BCL6!1.21!15.32!BCL6;;chr19:50432104..50432126,+!p6@ATF5!1.21!15.32!ATF5;;chr19:47616992..47617011,-!p4@ZC3H4!1.20!31.77!ZC3H4;;chr20:48809000..48809053,+!p12@CEBPB!1.20!19.86!CEBPB;;chr6:106535598..106535637,+!p7@PRDM1!1.20!14.75!PRDM1;;chr2:157189180..157189290,-!p1@NR4A2!1.19!75.46!NR4A2;;chr12:96588279..96588299,+!p4@ELK3!1.19!67.52!ELK3;;chr20:47894569..47894799,-!p1@ZNFX1!1.18!367.10!ZNFX1;;chr19:19496624..19496660,+!p3@GATAD2A!1.18!64.68!GATAD2A;;chr8:53373491..53373506,-!p4@ST18!1.18!14.18!ST18;;chr21:36260980..36261011,-!p1@RUNX1!1.17!393.77!RUNX1;;chr6:20403916..20403965,+!p3@E2F3!1.17!61.84!E2F3;;chr6:35310395..35310410,+!p2@PPARD!1.17!53.90!PPARD;;chr2:28618532..28618610,+!p4@FOSL2!1.17!23.83!FOSL2;;chr12:52445218..52445237,+!p1@NR4A1!1.16!167.95!NR4A1;;chr18:3449527..3449582,+!p6@TGIF1!1.16!25.53!TGIF1;;chr9:3526360..3526421,-!p5@RFX3!1.16!24.96!RFX3;;chr9:102584241..102584261,+!p4@NR4A3!1.16!20.99!NR4A3;;chrX:153305962..153305995,-!p5@MECP2!1.16!13.62!MECP2;;chr2:113999360..113999386,-!p4@PAX8!1.16!13.62!PAX8;;chr12:54778351..54778378,-!p6@ZNF385A!1.16!13.62!ZNF385A;;chr5:131826457..131826514,-!p1@IRF1!1.15!503.84!IRF1;;chr18:3449586..3449617,+!p8@TGIF1!1.15!20.99!TGIF1;;chr4:81104985..81105005,+!p4@PRDM8!1.15!15.89!PRDM8;;chrX:129244430..129244442,-!p5@ELF4!1.15!13.05!ELF4;;chr10:104155680..104155687,+!p6@NFKB2!1.15!13.05!NFKB2;;chr17:40440177..40440190,+!p6@STAT5A!1.15!13.05!STAT5A;;chr7:128577972..128578047,+!p1@IRF5!1.14!20.43!IRF5;;chr8:72756667..72756736,-!p2@MSC!1.14!19.86!MSC;;chr10:114709999..114710031,+!p1@TCF7L2!1.13!291.64!TCF7L2;;chr19:45504688..45504782,+!p1@RELB!1.13!75.46!RELB;;chr12:96588368..96588394,+!p3@ELK3!1.13!33.48!ELK3;;chr11:615570..615721,-!p2@IRF7!1.13!24.96!IRF7;;chr8:123793959..123793977,+!p4@ZHX2!1.13!24.40!ZHX2;;chr14:75988831..75988847,+!p2@BATF!1.13!12.48!BATF;;chr2:185462614..185462619,+!p5@ZNF804A!1.13!12.48!ZNF804A;;chr21:34442540..34442560,+!p2@OLIG1!1.13!12.48!OLIG1;;chr11:65667846..65667868,-!p1@FOSL1!1.12!318.30!FOSL1;;chr22:38598086..38598105,+!p1@MAFF!1.12!128.80!MAFF;;chr2:208394817..208394834,+!p3@CREB1!1.12!49.36!CREB1;;chr18:3449720..3449749,+!p2@TGIF1!1.12!26.10!TGIF1;;chr18:3448455..3448480,+!p5@TGIF1!1.12!22.70!TGIF1;;chr2:145275228..145275241,-!p11@ZEB2!1.12!14.75!ZEB2;;chr4:83822199..83822239,+!p2@THAP9!1.12!14.7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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=FF:0000625,FF:0000633,FF:0011109,FF:11876-125C4
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor2.CNhs13485.11876-125C4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor2.CNhs13485.11876-125C4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor2.CNhs13485.11876-125C4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor2.CNhs13485.11876-125C4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Salmonella%252c%2520donor2.CNhs13485.11876-125C4.hg38.nobarcode.ctss.bed.gz
 |id=FF:11876-125C4
 |is_a=EFO:0002091;;FF:0011109
 |is_obsolete=
+|library_id=CNhs13485
+|library_id_phase_based=2:CNhs13485
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11876
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11876
 |name=CD14+ monocytes - treated with Salmonella, donor2
 |namespace=
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13485,LSID1025,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
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@@ Line 59: / Line 79: @@
 |rna_weight_ug=3.53232
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+|sample_category=primary cells
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 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=NFE2:5.13003383378;NFE2L2:4.60677030448;BACH2:4.41644240485;FOS_FOS{B,L1}_JUN{B,D}:4.35145032125;NFKB1_REL_RELA:4.31754647726;HLF:4.24338882403;PAX2:4.2344666616;FOSL2:4.14744146143;CEBPA,B_DDIT3:4.14389844293;FOXP3:3.46922304053;NFIL3:3.26233682624;IRF7:3.26216987558;IRF1,2:3.14829941173;SPIB:3.03975458272;PAX8:3.01110557405;ATF4:2.98321573661;SPI1:2.94849236334;ATF5_CREB3:2.9173725348;NANOG{mouse}:2.57351889015;STAT2,4,6:2.51866887149;DMAP1_NCOR{1,2}_SMARC:2.5047271161;ETS1,2:2.50238869847;SREBF1,2:2.30513241659;PDX1:2.21896401105;CREB1:2.17510509106;FOXN1:2.0676003809;JUN:2.03882457034;NFATC1..3:2.02309650926;NFE2L1:1.94110963617;ATF6:1.87192883279;RUNX1..3:1.73169277637;HSF1,2:1.66320765254;ATF2:1.63082088608;PAX3,7:1.51837272107;HMGA1,2:1.45060271619;NR1H4:1.44438751317;STAT5{A,B}:1.38773239782;ALX1:1.34699202614;RXRA_VDR{dimer}:1.2614769455;ALX4:1.17921111619;CDX1,2,4:1.10948781441;HOXA9_MEIS1:1.00967383463;MAFB:0.971013111361;XBP1:0.926097320005;ELF1,2,4:0.907835157541;POU2F1..3:0.843186364973;GLI1..3:0.797906512522;PRDM1:0.746539784472;OCT4_SOX2{dimer}:0.704218038463;HMX1:0.674918350135;TGIF1:0.650516278435;TBP:0.617998056752;STAT1,3:0.5673083719;ZBTB16:0.496347592473;TLX2:0.487097514754;EP300:0.427507640819;SRF:0.367882269062;IKZF1:0.356485879606;TFCP2:0.342037029628;EN1,2:0.308310340986;EGR1..3:0.266804460551;HOX{A5,B5}:0.217757066773;POU5F1:0.160221033724;POU3F1..4:0.138521949528;PPARG:0.116303266985;SMAD1..7,9:0.0356948883926;BPTF:0.00434491393031;RBPJ:-0.000585089833589;FOXL1:-0.153634901508;HIF1A:-0.225559028116;PAX1,9:-0.235278932146;NANOG:-0.251492662416;FOXM1:-0.25633025016;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.271850967348;GATA4:-0.28288623445;PAX4:-0.302521548225;AHR_ARNT_ARNT2:-0.324120585541;HBP1_HMGB_SSRP1_UBTF:-0.342765621073;NR3C1:-0.397693915546;PITX1..3:-0.400517514734;ESR1:-0.453810774993;FOXO1,3,4:-0.462931910063;IKZF2:-0.49845769323;VSX1,2:-0.57555095961;SOX2:-0.589904492153;MZF1:-0.642654100871;NKX3-1:-0.644820318605;FOX{D1,D2}:-0.70413572708;FOXD3:-0.704707709688;HES1:-0.720068503955;DBP:-0.723963199026;POU6F1:-0.741870296335;MEF2{A,B,C,D}:-0.757974840609;HNF4A_NR2F1,2:-0.812801827663;RORA:-0.831143901083;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.832292023062;MYB:-0.83453940664;PAX6:-0.877781204641;NHLH1,2:-0.89000639397;MED-1{core}:-0.911457266039;MYFfamily:-0.988671262599;TFDP1:-0.992264232868;RFX2..5_RFXANK_RFXAP:-0.995024358495;NFIX:-1.05486616837;CDC5L:-1.05488954419;NR6A1:-1.08481085591;HNF1A:-1.111943451;REST:-1.15963418325;ZNF384:-1.1758835181;FOXA2:-1.17915707351;TAL1_TCF{3,4,12}:-1.18176670545;TBX4,5:-1.21896872076;FOXP1:-1.22333553354;TFAP2B:-1.22428638393;PRRX1,2:-1.25683442768;ZFP161:-1.26478866875;MTE{core}:-1.28079855833;HOX{A4,D4}:-1.31895209329;SOX{8,9,10}:-1.31920020461;CRX:-1.33555779042;ADNP_IRX_SIX_ZHX:-1.36753906322;NKX6-1,2:-1.37091291689;TFAP4:-1.40331881561;ZNF238:-1.42076323961;PATZ1:-1.4538246653;SPZ1:-1.46703002523;GATA6:-1.48882607004;FOX{F1,F2,J1}:-1.49137734189;SOX5:-1.49648431405;BREu{core}:-1.51091230691;RXR{A,B,G}:-1.51214040131;TLX1..3_NFIC{dimer}:-1.54911469911;E2F1..5:-1.5505846453;ZBTB6:-1.55590003854;XCPE1{core}:-1.55857738984;NKX2-2,8:-1.56506577399;TEAD1:-1.57390845747;HOX{A6,A7,B6,B7}:-1.58170279305;TFAP2{A,C}:-1.58412895397;ZNF148:-1.60197594094;RREB1:-1.62743833935;GZF1:-1.68418707511;GTF2I:-1.70630297093;ONECUT1,2:-1.71323778245;NKX3-2:-1.74158436605;CUX2:-1.76820644953;GCM1,2:-1.77230150389;GTF2A1,2:-1.79514821096;MTF1:-1.80444839411;T:-1.82967620202;SP1:-1.9146259035;TEF:-1.93625981271;NKX2-3_NKX2-5:-1.93886536426;ZEB1:-2.01708416733;HIC1:-2.03305967926;MAZ:-2.08199146761;POU1F1:-2.10911024185;ESRRA:-2.11658060868;RFX1:-2.14971220595;AIRE:-2.15532984405;GFI1B:-2.15738694246;TP53:-2.15784197595;ELK1,4_GABP{A,B1}:-2.17344837198;MYBL2:-2.18820688795;KLF4:-2.22917500314;UFEwm:-2.23361581457;SNAI1..3:-2.25754887691;NR5A1,2:-2.36030223122;ZNF423:-2.39975957179;MYOD1:-2.49916315498;FOXQ1:-2.50721564498;bHLH_family:-2.53832183966;NKX2-1,4:-2.59127596563;EBF1:-2.59607719922;NFY{A,B,C}:-2.62265542255;SOX17:-2.62390228031;LMO2:-2.73541527366;EVI1:-2.81460077657;ZIC1..3:-2.87784807097;PBX1:-2.88167779347;TOPORS:-2.88746143105;LHX3,4:-2.89021899222;PAX5:-3.00448264383;GFI1:-3.02426869387;AR:-3.0971012699;NRF1:-3.16812127436;YY1:-3.2044360547;FOX{I1,J2}:-3.24254898982;LEF1_TCF7_TCF7L1,2:-3.71949673252;ZNF143:-3.75203606195;ARID5B:-3.92793781542;HAND1,2:-3.98510134869
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11876-125C4;search_select_hide=table117:FF:11876-125C4
 }}

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FF:11876-125C4: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:25, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0