FF:11881-125C9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005007 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008152;DRR009024;DRZ000449;DRZ001834;DRZ011799;DRZ013184 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000350,FF:0000629,FF:0011443 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.41!2582.07!PLEK;;chr16:85932760..85932775,+!p1@IRF8!3.03!1066.41!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.69!488.45!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.61!402.36!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.28!190.52!TFEC;;chr6:36355431..36355466,-!p1@ETV7!2.18!151.31!ETV7;;chr11:47399947..47399961,-!p3@SPI1!2.14!138.10!SPI1;;chr6:106534192..106534224,+!p1@PRDM1!2.06!308.59!PRDM1;;chr1:25256756..25256774,-!p1@RUNX3!2.04!198.19!RUNX3;;chr20:39317868..39317884,-!p1@MAFB!1.98!1041.69!MAFB;;chr11:64764435..64764449,-!p1@BATF2!1.96!123.18!BATF2;;chr5:131826457..131826514,-!p1@IRF1!1.95!3229.50!IRF1;;chr10:35484053..35484076,+!p1@CREM!1.89!185.41!CREM;;chr11:47400062..47400077,-!p2@SPI1!1.89!76.29!SPI1;;chr7:128577972..128578047,+!p1@IRF5!1.88!114.65!IRF5;;chr2:231084639..231084654,-!p2@SP110!1.87!118.06!SP110;;chr11:615942..615957,-!p1@IRF7!1.86!643.17!IRF7;;chr21:34442439..34442455,+!p1@OLIG1!1.86!70.75!OLIG1;;chr6:106534230..106534254,+!p2@PRDM1!1.84!164.95!PRDM1;;chr2:70142232..70142251,+!p1@MXD1!1.83!357.18!MXD1;;chr12:54778351..54778378,-!p6@ZNF385A!1.82!64.79!ZNF385A;;chr11:47400032..47400043,-!p5@SPI1!1.82!64.36!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.81!63.51!SPI1;;chr10:64576105..64576133,-!p1@EGR2!1.78!118.92!EGR2;;chr19:33793430..33793447,-!p1@CEBPA!1.75!222.06!CEBPA;;chr21:30671690..30671762,+!p2@BACH1!1.73!172.62!BACH1;;chr19:50432132..50432217,+!p2@ATF5!1.70!57.54!ATF5;;chr21:36260295..36260310,-!p3@RUNX1!1.69!76.72!RUNX1;;chr7:50344289..50344323,+!p1@IKZF1!1.68!46.46!IKZF1;;chr14:75988771..75988826,+!p1@BATF!1.65!57.11!BATF;;chr2:68592394..68592405,+!p2@PLEK!1.65!43.47!PLEK;;chr16:31885093..31885165,+!p1@ZNF267!1.63!606.52!ZNF267;;chr2:97202480..97202499,+!p1@ARID5A!1.62!395.11!ARID5A;;chr6:144385698..144385742,-!p2@PLAGL1!1.62!48.59!PLAGL1;;chr2:145277640..145277771,-!p1@ZEB2!1.60!494.85!ZEB2;;chr14:75988831..75988847,+!p2@BATF!1.59!37.51!BATF;;chr1:158985493..158985535,+!p4@IFI16!1.58!55.84!IFI16;;chr17:45810594..45810608,+!p1@TBX21!1.56!34.95!TBX21;;chr19:45971246..45971265,+!p1@FOSB!1.55!606.09!FOSB;;chr12:11802753..11802834,+!p2@ETV6!1.55!161.54!ETV6;;chr10:51572408..51572454,+!p3@NCOA4!1.54!187.97!NCOA4;;chr11:65430554..65430579,-!p3@RELA!1.54!83.97!RELA;;chr1:158979872..158979898,+!p3@IFI16!1.50!92.06!IFI16;;chr10:51572339..51572376,+!p4@NCOA4!1.50!67.77!NCOA4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.48!29.41!ZBED1;;chr21:30671235..30671253,+!p1@BACH1!1.47!348.23!BACH1;;chr21:36421535..36421610,-!p2@RUNX1!1.46!95.47!RUNX1;;chr11:615570..615721,-!p2@IRF7!1.46!54.13!IRF7;;chr11:47400045..47400060,-!p6@SPI1!1.46!27.70!SPI1;;chrX:129244454..129244488,-!p1@ELF4!1.45!190.10!ELF4;;chr11:65430535..65430549,-!p4@RELA!1.44!30.69!RELA;;chr12:48298765..48298783,-!p2@VDR!1.42!52.00!VDR;;chr12:72056800..72056834,+!p1@THAP2!1.42!33.67!THAP2;;chr4:185395590..185395627,-!p3@IRF2!1.41!30.69!IRF2;;chr2:231090471..231090504,+!p2@SP140!1.41!24.72!SP140;;chr2:145275162..145275202,-!p2@ZEB2!1.40!137.24!ZEB2;;chr12:56415246..56415286,+!p2@IKZF4!1.40!23.87!IKZF4;;chr6:391743..391759,+!p1@IRF4!1.40!23.87!IRF4;;chr1:212782094..212782109,+!p1@ATF3!1.39!618.88!ATF3;;chr19:45251395..45251432,+!p8@BCL3!1.39!23.44!BCL3;;chrX:129244430..129244442,-!p5@ELF4!1.39!23.44!ELF4;;chr16:79634624..79634642,-!p1@MAF!1.37!86.52!MAF;;chr12:54694758..54694805,-!p1@NFE2!1.36!26.43!NFE2;;chr11:47399920..47399931,-!p7@SPI1!1.35!21.31!SPI1;;chr21:30672433..30672464,+!p6@BACH1!1.35!21.31!BACH1;;chr3:187455486..187455504,-!p6@BCL6!1.35!21.31!BCL6;;chr7:28725740..28725778,+!p1@CREB5!1.34!181.15!CREB5;;chr2:70314240..70314256,+!p4@PCBP1!1.34!42.20!PCBP1;;chr12:48298785..48298828,-!p1@VDR!1.33!106.13!VDR;;chr9:110250697..110250738,-!p2@KLF4!1.33!23.87!KLF4;;chr7:150946376..150946389,-!p6@SMARCD3!1.33!20.46!SMARCD3;;chr3:187455529..187455544,-!p5@BCL6!1.33!20.46!BCL6;;chr1:25256439..25256476,-!p3@RUNX3!1.33!20.46!RUNX3;;chr9:110252035..110252057,-!p1@KLF4!1.32!307.31!KLF4;;chr12:72056749..72056767,+!p6@THAP2!1.31!21.31!THAP2;;chr17:38497662..38497713,+!p4@RARA!1.30!22.16!RARA;;chr2:231084820..231084836,-!p5@SP110!1.30!21.74!SP110;;chr4:185395633..185395651,-!p2@IRF2!1.29!29.41!IRF2;;chr2:231084659..231084721,-!p1@SP110!1.28!409.18!SP110;;chr19:45250948..45250998,+!p3@BCL3!1.28!44.75!BCL3;;chr18:3449720..3449749,+!p2@TGIF1!1.28!38.36!TGIF1;;chr2:231280954..231280965,+!p2@SP100!1.27!32.39!SP100;;chr1:221052776..221052799,+!p1@HLX!1.27!31.11!HLX;;chr6:106535598..106535637,+!p7@PRDM1!1.27!17.48!PRDM1;;chr10:31288370..31288393,-!p3@ZNF438!1.26!17.05!ZNF438;;chr12:72056773..72056796,+!p3@THAP2!1.25!21.74!THAP2;;chr2:238600998..238601013,+!p5@LRRFIP1!1.25!16.62!LRRFIP1;;chr13:41593425..41593480,-!p1@ELF1!1.24!103.15!ELF1;;chr14:35872453..35872485,-!p2@NFKBIA!1.24!40.07!NFKBIA;;chr19:13213662..13213686,-!p1@LYL1!1.24!24.29!LYL1;;chr3:187455680..187455700,-!p4@BCL6!1.24!16.20!BCL6;;chr10:31288398..31288455,-!p2@ZNF438!1.22!18.33!ZNF438;;chr12:56415287..56415300,+!p5@IKZF4!1.22!15.77!IKZF4;;chr7:17338266..17338282,+!p1@AHR!1.21!160.26!AHR;;chr19:45252008..45252024,+!p2@BCL3!1.21!50.29!BCL3;;chr4:106068026..106068084,+!p1@TET2!1.20!130.85!TET2;;chr3:39195037..39195069,-!p2@CSRNP1!1.20!90.79!CSRNP1;;chr1:8484007..8484061,-!p13@RERE!1.20!18.75!RERE;;chr6:126240463..126240489,+!p6@NCOA7!1.20!16.62!NCOA7;;chr1:158979922..158979933,+!p13@IFI16!1.20!14.92!IFI16;;chr16:3285119..3285133,-!p2@ZNF200!1.19!28.98!ZNF200;;chr1:221052733..221052749,+!p2@HLX!1.19!18.75!HLX;;chr2:231090433..231090469,+!p1@SP140!1.18!14.07!SP140;;chr6:36355486..36355497,-!p3@ETV7!1.18!14.07!ETV7;;chr19:19496539..19496576,+!p8@GATAD2A!1.17!24.29!GATAD2A;;chr3:187463179..187463201,-!p2@BCL6!1.16!55.41!BCL6;;chr8:116681123..116681143,-!p4@TRPS1!1.16!26.00!TRPS1;;chr16:89787973..89788001,+!p3@ZNF276!1.16!26.00!ZNF276;;chr4:103422499..103422632,+!p1@NFKB1!1.15!269.80!NFKB1;;chr6:15246200..15246214,+!p2@JARID2!1.15!35.80!JARID2;;chr16:79634595..79634620,-!p2@MAF!1.15!23.87!MAF;;chr20:56195474..56195506,-!p1@ZBP1!1.15!13.21!ZBP1;;chr10:35484090..35484104,+!p6@CREM!1.15!13.21!CREM;;chr11:2292226..2292270,-!p1@ASCL2!1.15!13.21!ASCL2;;chr3:107318352..107318392,+!p14@BBX!1.15!13.21!BBX;;chr12:96588279..96588299,+!p4@ELK3!1.14!60.10!ELK3;;chr17:38498402..38498445,+!p3@RARA!1.13!45.18!RARA;;chr14:74226747..74226779,-!p3@C14orf43!1.12!68.62!C14orf43;;chr6:126240380..126240430,+!p2@NCOA7!1.12!31.97!NCOA7;;chr8:71316428..71316459,-!p2@NCOA2!1.12!20.46!NCOA2;;chr20:48807351..48807384,+!p1@CEBPB!1.11!1216.45!CEBPB;;chr22:38597987..38598021,+!p2@MAFF!1.11!73.31!MAFF;;chr3:187455634..187455651,-!p7@BCL6!1.11!11.93!BCL6;;chr19:45251943..45252006,+!p1@BCL3!1.10!303.05!BCL3;;chr9:129567282..129567353,+!p1@ZBTB43!1.10!151.31!ZBTB43;;chr12:96588219..96588263,+!p2@ELK3!1.10!83.97!ELK3;;chr2:145277882..145277967,-!p3@ZEB2!1.10!20.03!ZEB2;;chr21:34442540..34442560,+!p2@OLIG1!1.10!11.51!OLIG1;;chr17:38498594..38498661,+!p2@RARA!1.09!38.36!RARA;;chr7:17338324..17338341,+!p3@AHR!1.09!37.93!AHR;;chr3:12329397..12329433,+!p2@PPARG!1.09!26.00!PPARG;;chr21:36260343..36260402,-!p6@RUNX1!1.09!18.33!RUNX1;;chr6:44233252..44233296,-!p1@NFKBIE!1.08!108.26!NFKBIE;;chr10:104155480..104155534,+!p2@NFKB2!1.08!72.46!NFKB2;;chr19:12721790..12721810,+!p2@ZNF791!1.08!30.26!ZNF791;;chr1:221053049..221053075,+!p3@HLX!1.08!19.18!HLX;;chr2:28618532..28618610,+!p4@FOSL2!1.08!18.75!FOSL2;;chr14:75745523..75745537,+!p1@FOS!1.07!1275.69!FOS;;chr14:74226961..74227020,-!p1@C14orf43!1.07!71.61!C14orf43;;chr2:238600933..238600985,+!p3@LRRFIP1!1.07!58.82!LRRFIP1;;chr12:54785074..54785122,-!p2@ZNF385A!1.07!16.62!ZNF385A;;chrX:153305787..153305807,-!p3@MECP2!1.07!10.66!MECP2;;chr12:56753869..56753930,-!p1@STAT2!1.05!451.37!STAT2;;chr3:170075436..170075520,+!p1@SKIL!1.05!223.34!SKIL;;chr10:3827371..3827386,-!p2@KLF6!1.05!87.80!KLF6;;chr18:3449618..3449634,+!p13@TGIF1!1.05!12.79!TGIF1;;chr21:34398234..34398250,+!p1@OLIG2!1.05!10.23!OLIG2;;chr12:96588368..96588394,+!p3@ELK3!1.04!27.28!ELK3;;chr9:3525727..3525828,-!p2@RFX3!1.04!26.00!RFX3;;chr4:185395191..185395226,-!p4@IRF2!1.04!14.07!IRF2;;chr19:45254529..45254561,+!p10@BCL3!1.04!13.64!BCL3;;chr14:35873947..35873965,-!p1@NFKBIA!1.03!618.03!NFKBIA;;chr14:24630465..24630531,+!p1@IRF9!1.03!373.37!IRF9;;chr3:107318229..107318239,+!p17@BBX!1.03!9.80!BBX;;chr1:158979792..158979814,+!p2@IFI16!1.02!92.06!IFI16;;chr10:104154246..104154347,+!p3@NFKB2!1.02!59.25!NFKB2;;chr1:158979851..158979865,+!p5@IFI16!1.02!21.31!IFI16;;chr12:54785054..54785072,-!p4@ZNF385A!1.02!10.66!ZNF385A;;chr20:48599506..48599526,+!p1@SNAI1!1.01!60.52!SNAI1;;chr12:124873852..124873881,-!p3@NCOR2!1.01!56.26!NCOR2;;chr2:157189180..157189290,-!p1@NR4A2!1.01!49.02!NR4A2;;chr3:37217736..37217753,-!p2@LRRFIP2!1.01!39.21!LRRFIP2;;chr10:35484804..35484902,+!p2@CREM!1.01!36.23!CREM;;chr2:185463247..185463263,+!p1@ZNF804A!1.01!16.62!ZNF804A;;chr12:11802932..11802949,+!p3@ETV6!1.01!16.20!ETV6;;chr7:150974206..150974255,-!p1@SMARCD3!0.99!56.69!SMARCD3;;chr19:42636586..42636607,-!p1@POU2F2!0.99!24.72!POU2F2;;chr5:142782823..142782854,-!p3@NR3C1!0.99!12.79!NR3C1;;chr21:36260980..36261011,-!p1@RUNX1!0.98!252.75!RUNX1;;chrX:106960285..106960299,-!p1@TSC22D3!0.98!236.55!TSC22D3;;chr5:172483347..172483407,+!p1@C5orf41!0.98!65.64!CREBRF;;chr8:116681150..116681164,-!p5@TRPS1!0.98!17.05!TRPS1;;chr2:70167296..70167306,+!p3@MXD1!0.98!13.21!MXD1;;chr2:191885737..191885750,-!p4@STAT1!0.98!8.52!STAT1;;chr7:50343634..50343717,+!p2@IKZF1!0.98!8.52!IKZF1;;chr1:158985686..158985719,+!p15@IFI16!0.98!8.52!IFI16;;chr21:36260325..36260341,-!p14@RUNX1!0.98!8.52!RUNX1;;chr8:116681194..116681214,-!p1@TRPS1!0.97!79.70!TRPS1;;chr2:70142189..70142223,+!p2@MXD1!0.97!61.38!MXD1;;chr2:61108695..61108753,+!p1@REL!0.97!58.82!REL;;chr14:35872962..35873025,-!p3@NFKBIA!0.97!21.31!NFKBIA;;chr7:99156393..99156433,+!p6@ZNF655!0.97!19.18!ZNF655;;chr20:47894569..47894799,-!p1@ZNFX1!0.96!222.06!ZNFX1;;chr7:139762641..139762768,-!p1@PARP12!0.96!113.80!PARP12;;chr4:26322267..26322334,+!p3@RBPJ!0.96!20.03!RBPJ;;c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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.41!2582.07!PLEK;;chr16:85932760..85932775,+!p1@IRF8!3.03!1066.41!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.69!488.45!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.61!402.36!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.28!190.52!TFEC;;chr6:36355431..36355466,-!p1@ETV7!2.18!151.31!ETV7;;chr11:47399947..47399961,-!p3@SPI1!2.14!138.10!SPI1;;chr6:106534192..106534224,+!p1@PRDM1!2.06!308.59!PRDM1;;chr1:25256756..25256774,-!p1@RUNX3!2.04!198.19!RUNX3;;chr20:39317868..39317884,-!p1@MAFB!1.98!1041.69!MAFB;;chr11:64764435..64764449,-!p1@BATF2!1.96!123.18!BATF2;;chr5:131826457..131826514,-!p1@IRF1!1.95!3229.50!IRF1;;chr10:35484053..35484076,+!p1@CREM!1.89!185.41!CREM;;chr11:47400062..47400077,-!p2@SPI1!1.89!76.29!SPI1;;chr7:128577972..128578047,+!p1@IRF5!1.88!114.65!IRF5;;chr2:231084639..231084654,-!p2@SP110!1.87!118.06!SP110;;chr11:615942..615957,-!p1@IRF7!1.86!643.17!IRF7;;chr21:34442439..34442455,+!p1@OLIG1!1.86!70.75!OLIG1;;chr6:106534230..106534254,+!p2@PRDM1!1.84!164.95!PRDM1;;chr2:70142232..70142251,+!p1@MXD1!1.83!357.18!MXD1;;chr12:54778351..54778378,-!p6@ZNF385A!1.82!64.79!ZNF385A;;chr11:47400032..47400043,-!p5@SPI1!1.82!64.36!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.81!63.51!SPI1;;chr10:64576105..64576133,-!p1@EGR2!1.78!118.92!EGR2;;chr19:33793430..33793447,-!p1@CEBPA!1.75!222.06!CEBPA;;chr21:30671690..30671762,+!p2@BACH1!1.73!172.62!BACH1;;chr19:50432132..50432217,+!p2@ATF5!1.70!57.54!ATF5;;chr21:36260295..36260310,-!p3@RUNX1!1.69!76.72!RUNX1;;chr7:50344289..50344323,+!p1@IKZF1!1.68!46.46!IKZF1;;chr14:75988771..75988826,+!p1@BATF!1.65!57.11!BATF;;chr2:68592394..68592405,+!p2@PLEK!1.65!43.47!PLEK;;chr16:31885093..31885165,+!p1@ZNF267!1.63!606.52!ZNF267;;chr2:97202480..97202499,+!p1@ARID5A!1.62!395.11!ARID5A;;chr6:144385698..144385742,-!p2@PLAGL1!1.62!48.59!PLAGL1;;chr2:145277640..145277771,-!p1@ZEB2!1.60!494.85!ZEB2;;chr14:75988831..75988847,+!p2@BATF!1.59!37.51!BATF;;chr1:158985493..158985535,+!p4@IFI16!1.58!55.84!IFI16;;chr17:45810594..45810608,+!p1@TBX21!1.56!34.95!TBX21;;chr19:45971246..45971265,+!p1@FOSB!1.55!606.09!FOSB;;chr12:11802753..11802834,+!p2@ETV6!1.55!161.54!ETV6;;chr10:51572408..51572454,+!p3@NCOA4!1.54!187.97!NCOA4;;chr11:65430554..65430579,-!p3@RELA!1.54!83.97!RELA;;chr1:158979872..158979898,+!p3@IFI16!1.50!92.06!IFI16;;chr10:51572339..51572376,+!p4@NCOA4!1.50!67.77!NCOA4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.48!29.41!ZBED1;;chr21:30671235..30671253,+!p1@BACH1!1.47!348.23!BACH1;;chr21:36421535..36421610,-!p2@RUNX1!1.46!95.47!RUNX1;;chr11:615570..615721,-!p2@IRF7!1.46!54.13!IRF7;;chr11:47400045..47400060,-!p6@SPI1!1.46!27.70!SPI1;;chrX:129244454..129244488,-!p1@ELF4!1.45!190.10!ELF4;;chr11:65430535..65430549,-!p4@RELA!1.44!30.69!RELA;;chr12:48298765..48298783,-!p2@VDR!1.42!52.00!VDR;;chr12:72056800..72056834,+!p1@THAP2!1.42!33.67!THAP2;;chr4:185395590..185395627,-!p3@IRF2!1.41!30.69!IRF2;;chr2:231090471..231090504,+!p2@SP140!1.41!24.72!SP140;;chr2:145275162..145275202,-!p2@ZEB2!1.40!137.24!ZEB2;;chr12:56415246..56415286,+!p2@IKZF4!1.40!23.87!IKZF4;;chr6:391743..391759,+!p1@IRF4!1.40!23.87!IRF4;;chr1:212782094..212782109,+!p1@ATF3!1.39!618.88!ATF3;;chr19:45251395..45251432,+!p8@BCL3!1.39!23.44!BCL3;;chrX:129244430..129244442,-!p5@ELF4!1.39!23.44!ELF4;;chr16:79634624..79634642,-!p1@MAF!1.37!86.52!MAF;;chr12:54694758..54694805,-!p1@NFE2!1.36!26.43!NFE2;;chr11:47399920..47399931,-!p7@SPI1!1.35!21.31!SPI1;;chr21:30672433..30672464,+!p6@BACH1!1.35!21.31!BACH1;;chr3:187455486..187455504,-!p6@BCL6!1.35!21.31!BCL6;;chr7:28725740..28725778,+!p1@CREB5!1.34!181.15!CREB5;;chr2:70314240..70314256,+!p4@PCBP1!1.34!42.20!PCBP1;;chr12:48298785..48298828,-!p1@VDR!1.33!106.13!VDR;;chr9:110250697..110250738,-!p2@KLF4!1.33!23.87!KLF4;;chr7:150946376..150946389,-!p6@SMARCD3!1.33!20.46!SMARCD3;;chr3:187455529..187455544,-!p5@BCL6!1.33!20.46!BCL6;;chr1:25256439..25256476,-!p3@RUNX3!1.33!20.46!RUNX3;;chr9:110252035..110252057,-!p1@KLF4!1.32!307.31!KLF4;;chr12:72056749..72056767,+!p6@THAP2!1.31!21.31!THAP2;;chr17:38497662..38497713,+!p4@RARA!1.30!22.16!RARA;;chr2:231084820..231084836,-!p5@SP110!1.30!21.74!SP110;;chr4:185395633..185395651,-!p2@IRF2!1.29!29.41!IRF2;;chr2:231084659..231084721,-!p1@SP110!1.28!409.18!SP110;;chr19:45250948..45250998,+!p3@BCL3!1.28!44.75!BCL3;;chr18:3449720..3449749,+!p2@TGIF1!1.28!38.36!TGIF1;;chr2:231280954..231280965,+!p2@SP100!1.27!32.39!SP100;;chr1:221052776..221052799,+!p1@HLX!1.27!31.11!HLX;;chr6:106535598..106535637,+!p7@PRDM1!1.27!17.48!PRDM1;;chr10:31288370..31288393,-!p3@ZNF438!1.26!17.05!ZNF438;;chr12:72056773..72056796,+!p3@THAP2!1.25!21.74!THAP2;;chr2:238600998..238601013,+!p5@LRRFIP1!1.25!16.62!LRRFIP1;;chr13:41593425..41593480,-!p1@ELF1!1.24!103.15!ELF1;;chr14:35872453..35872485,-!p2@NFKBIA!1.24!40.07!NFKBIA;;chr19:13213662..13213686,-!p1@LYL1!1.24!24.29!LYL1;;chr3:187455680..187455700,-!p4@BCL6!1.24!16.20!BCL6;;chr10:31288398..31288455,-!p2@ZNF438!1.22!18.33!ZNF438;;chr12:56415287..56415300,+!p5@IKZF4!1.22!15.77!IKZF4;;chr7:17338266..17338282,+!p1@AHR!1.21!160.26!AHR;;chr19:45252008..45252024,+!p2@BCL3!1.21!50.29!BCL3;;chr4:106068026..106068084,+!p1@TET2!1.20!130.85!TET2;;chr3:39195037..39195069,-!p2@CSRNP1!1.20!90.79!CSRNP1;;chr1:8484007..8484061,-!p13@RERE!1.20!18.75!RERE;;chr6:126240463..126240489,+!p6@NCOA7!1.20!16.62!NCOA7;;chr1:158979922..158979933,+!p13@IFI16!1.20!14.92!IFI16;;chr16:3285119..3285133,-!p2@ZNF200!1.19!28.98!ZNF200;;chr1:221052733..221052749,+!p2@HLX!1.19!18.75!HLX;;chr2:231090433..231090469,+!p1@SP140!1.18!14.07!SP140;;chr6:36355486..36355497,-!p3@ETV7!1.18!14.07!ETV7;;chr19:19496539..19496576,+!p8@GATAD2A!1.17!24.29!GATAD2A;;chr3:187463179..187463201,-!p2@BCL6!1.16!55.41!BCL6;;chr8:116681123..116681143,-!p4@TRPS1!1.16!26.00!TRPS1;;chr16:89787973..89788001,+!p3@ZNF276!1.16!26.00!ZNF276;;chr4:103422499..103422632,+!p1@NFKB1!1.15!269.80!NFKB1;;chr6:15246200..15246214,+!p2@JARID2!1.15!35.80!JARID2;;chr16:79634595..79634620,-!p2@MAF!1.15!23.87!MAF;;chr20:56195474..56195506,-!p1@ZBP1!1.15!13.21!ZBP1;;chr10:35484090..35484104,+!p6@CREM!1.15!13.21!CREM;;chr11:2292226..2292270,-!p1@ASCL2!1.15!13.21!ASCL2;;chr3:107318352..107318392,+!p14@BBX!1.15!13.21!BBX;;chr12:96588279..96588299,+!p4@ELK3!1.14!60.10!ELK3;;chr17:38498402..38498445,+!p3@RARA!1.13!45.18!RARA;;chr14:74226747..74226779,-!p3@C14orf43!1.12!68.62!C14orf43;;chr6:126240380..126240430,+!p2@NCOA7!1.12!31.97!NCOA7;;chr8:71316428..71316459,-!p2@NCOA2!1.12!20.46!NCOA2;;chr20:48807351..48807384,+!p1@CEBPB!1.11!1216.45!CEBPB;;chr22:38597987..38598021,+!p2@MAFF!1.11!73.31!MAFF;;chr3:187455634..187455651,-!p7@BCL6!1.11!11.93!BCL6;;chr19:45251943..45252006,+!p1@BCL3!1.10!303.05!BCL3;;chr9:129567282..129567353,+!p1@ZBTB43!1.10!151.31!ZBTB43;;chr12:96588219..96588263,+!p2@ELK3!1.10!83.97!ELK3;;chr2:145277882..145277967,-!p3@ZEB2!1.10!20.03!ZEB2;;chr21:34442540..34442560,+!p2@OLIG1!1.10!11.51!OLIG1;;chr17:38498594..38498661,+!p2@RARA!1.09!38.36!RARA;;chr7:17338324..17338341,+!p3@AHR!1.09!37.93!AHR;;chr3:12329397..12329433,+!p2@PPARG!1.09!26.00!PPARG;;chr21:36260343..36260402,-!p6@RUNX1!1.09!18.33!RUNX1;;chr6:44233252..44233296,-!p1@NFKBIE!1.08!108.26!NFKBIE;;chr10:104155480..104155534,+!p2@NFKB2!1.08!72.46!NFKB2;;chr19:12721790..12721810,+!p2@ZNF791!1.08!30.26!ZNF791;;chr1:221053049..221053075,+!p3@HLX!1.08!19.18!HLX;;chr2:28618532..28618610,+!p4@FOSL2!1.08!18.75!FOSL2;;chr14:75745523..75745537,+!p1@FOS!1.07!1275.69!FOS;;chr14:74226961..74227020,-!p1@C14orf43!1.07!71.61!C14orf43;;chr2:238600933..238600985,+!p3@LRRFIP1!1.07!58.82!LRRFIP1;;chr12:54785074..54785122,-!p2@ZNF385A!1.07!16.62!ZNF385A;;chrX:153305787..153305807,-!p3@MECP2!1.07!10.66!MECP2;;chr12:56753869..56753930,-!p1@STAT2!1.05!451.37!STAT2;;chr3:170075436..170075520,+!p1@SKIL!1.05!223.34!SKIL;;chr10:3827371..3827386,-!p2@KLF6!1.05!87.80!KLF6;;chr18:3449618..3449634,+!p13@TGIF1!1.05!12.79!TGIF1;;chr21:34398234..34398250,+!p1@OLIG2!1.05!10.23!OLIG2;;chr12:96588368..96588394,+!p3@ELK3!1.04!27.28!ELK3;;chr9:3525727..3525828,-!p2@RFX3!1.04!26.00!RFX3;;chr4:185395191..185395226,-!p4@IRF2!1.04!14.07!IRF2;;chr19:45254529..45254561,+!p10@BCL3!1.04!13.64!BCL3;;chr14:35873947..35873965,-!p1@NFKBIA!1.03!618.03!NFKBIA;;chr14:24630465..24630531,+!p1@IRF9!1.03!373.37!IRF9;;chr3:107318229..107318239,+!p17@BBX!1.03!9.80!BBX;;chr1:158979792..158979814,+!p2@IFI16!1.02!92.06!IFI16;;chr10:104154246..104154347,+!p3@NFKB2!1.02!59.25!NFKB2;;chr1:158979851..158979865,+!p5@IFI16!1.02!21.31!IFI16;;chr12:54785054..54785072,-!p4@ZNF385A!1.02!10.66!ZNF385A;;chr20:48599506..48599526,+!p1@SNAI1!1.01!60.52!SNAI1;;chr12:124873852..124873881,-!p3@NCOR2!1.01!56.26!NCOR2;;chr2:157189180..157189290,-!p1@NR4A2!1.01!49.02!NR4A2;;chr3:37217736..37217753,-!p2@LRRFIP2!1.01!39.21!LRRFIP2;;chr10:35484804..35484902,+!p2@CREM!1.01!36.23!CREM;;chr2:185463247..185463263,+!p1@ZNF804A!1.01!16.62!ZNF804A;;chr12:11802932..11802949,+!p3@ETV6!1.01!16.20!ETV6;;chr7:150974206..150974255,-!p1@SMARCD3!0.99!56.69!SMARCD3;;chr19:42636586..42636607,-!p1@POU2F2!0.99!24.72!POU2F2;;chr5:142782823..142782854,-!p3@NR3C1!0.99!12.79!NR3C1;;chr21:36260980..36261011,-!p1@RUNX1!0.98!252.75!RUNX1;;chrX:106960285..106960299,-!p1@TSC22D3!0.98!236.55!TSC22D3;;chr5:172483347..172483407,+!p1@C5orf41!0.98!65.64!CREBRF;;chr8:116681150..116681164,-!p5@TRPS1!0.98!17.05!TRPS1;;chr2:70167296..70167306,+!p3@MXD1!0.98!13.21!MXD1;;chr2:191885737..191885750,-!p4@STAT1!0.98!8.52!STAT1;;chr7:50343634..50343717,+!p2@IKZF1!0.98!8.52!IKZF1;;chr1:158985686..158985719,+!p15@IFI16!0.98!8.52!IFI16;;chr21:36260325..36260341,-!p14@RUNX1!0.98!8.52!RUNX1;;chr8:116681194..116681214,-!p1@TRPS1!0.97!79.70!TRPS1;;chr2:70142189..70142223,+!p2@MXD1!0.97!61.38!MXD1;;chr2:61108695..61108753,+!p1@REL!0.97!58.82!REL;;chr14:35872962..35873025,-!p3@NFKBIA!0.97!21.31!NFKBIA;;chr7:99156393..99156433,+!p6@ZNF655!0.97!19.18!ZNF655;;chr20:47894569..47894799,-!p1@ZNFX1!0.96!222.06!ZNFX1;;chr7:139762641..139762768,-!p1@PARP12!0.96!113.80!PARP12;;chr4:26322267..26322334,+!p3@RBPJ!0.96!20.03!RBPJ;;c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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 36: | Line 42: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000629,FF:0011443,FF:11881-125C9 | |fonse_treatment_closure=EFO:0000369,FF:0000629,FF:0011443,FF:11881-125C9 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor3.CNhs13490.11881-125C9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor3.CNhs13490.11881-125C9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor3.CNhs13490.11881-125C9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor3.CNhs13490.11881-125C9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor3.CNhs13490.11881-125C9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11881-125C9 | |id=FF:11881-125C9 | ||
|is_a=EFO:0002091;;FF:0011443 | |is_a=EFO:0002091;;FF:0011443 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13490 | |||
|library_id_phase_based=2:CNhs13490 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11881 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11881 | |||
|name=CD14+ monocytes - treated with IFN + N-hexane, donor3 | |name=CD14+ monocytes - treated with IFN + N-hexane, donor3 | ||
|namespace= | |namespace= | ||
Line 44: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13490,LSID1025,release012,COMPLETED | |profile_hcage=CNhs13490,LSID1025,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 59: | Line 79: | ||
|rna_weight_ug=2.74149 | |rna_weight_ug=2.74149 | ||
|sample_age=21 | |sample_age=21 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 80: | Line 101: | ||
|top_motifs=STAT2,4,6:5.11984081227;STAT1,3:4.46933375631;IRF7:4.19187455534;IRF1,2:3.753367067;STAT5{A,B}:3.20571163191;CEBPA,B_DDIT3:3.11980719592;EP300:2.92177581893;SPIB:2.73823543167;SPI1:2.61376481887;NFE2L2:2.60203836357;NANOG{mouse}:2.5134441175;NFE2:2.45252553549;PAX2:2.40151406391;FOSL2:2.37672951723;ETS1,2:2.19518831452;FOXN1:2.19422831478;SREBF1,2:2.17040548654;DMAP1_NCOR{1,2}_SMARC:2.02779701575;HLF:2.02508426661;FOXP3:1.95452028118;FOS_FOS{B,L1}_JUN{B,D}:1.81605959918;BACH2:1.80442102504;NFIL3:1.76600484738;NR1H4:1.61236023102;ELF1,2,4:1.5940092459;RUNX1..3:1.53444076353;NFKB1_REL_RELA:1.48795537917;ATF5_CREB3:1.48231838419;TLX2:1.44717221104;ATF4:1.39456500693;HMX1:1.36577954282;ATF6:1.33661549607;NR6A1:1.30664693297;HSF1,2:1.23907685764;TGIF1:1.23648042787;HIF1A:1.13638819053;ALX4:1.09857470182;TFCP2:1.03683055928;HBP1_HMGB_SSRP1_UBTF:0.99492090151;PDX1:0.959199394152;NFE2L1:0.953624406924;CREB1:0.858775908333;SPZ1:0.798030278199;BPTF:0.784772604631;ATF2:0.761676862813;ESRRA:0.722392599703;SMAD1..7,9:0.694414071621;MAFB:0.651962371421;HMGA1,2:0.616130821789;ZBTB16:0.604911525452;JUN:0.600675334255;FOX{D1,D2}:0.558578484628;GATA4:0.493895557281;FOX{F1,F2,J1}:0.4049533894;RXRA_VDR{dimer}:0.402319163205;PPARG:0.385942595518;NFATC1..3:0.341533404042;RBPJ:0.312607759161;FOXO1,3,4:0.25933010476;GLI1..3:0.224247079045;RFX2..5_RFXANK_RFXAP:0.200980463989;AHR_ARNT_ARNT2:0.184732254632;EN1,2:0.156595987245;NANOG:0.149867255394;CDX1,2,4:0.142388682476;SRF:0.129656853557;PAX3,7:0.113748500467;XBP1:0.102751571685;PITX1..3:0.101466704497;VSX1,2:0.100805536651;PRDM1:0.0472164493685;IKZF2:-0.0388823809539;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0737912916906;RXR{A,B,G}:-0.0888419727827;MYB:-0.0912909554921;NKX3-2:-0.166409635742;ESR1:-0.197427890544;NFIX:-0.236026946067;MYFfamily:-0.267302914845;TFAP4:-0.305515193925;IKZF1:-0.328490199052;HES1:-0.337741967153;NKX6-1,2:-0.341925862482;FOXP1:-0.365709062843;FOXM1:-0.368903848869;OCT4_SOX2{dimer}:-0.411568325906;HNF4A_NR2F1,2:-0.416136340192;PAX1,9:-0.417664364139;ZNF238:-0.46484664159;TBP:-0.473888541555;REST:-0.511370186738;POU1F1:-0.524737360013;EGR1..3:-0.527619709755;HOX{A6,A7,B6,B7}:-0.530937904091;MZF1:-0.549544382772;MEF2{A,B,C,D}:-0.593009208664;PATZ1:-0.602313393229;PAX8:-0.606192109732;FOXD3:-0.622928378184;POU5F1:-0.663317625432;SOX2:-0.678927758186;TAL1_TCF{3,4,12}:-0.687383306047;NHLH1,2:-0.700355695995;FOXA2:-0.709573417798;TFAP2{A,C}:-0.716221656273;PRRX1,2:-0.741628157128;HOX{A5,B5}:-0.757327987361;MED-1{core}:-0.773636397934;HNF1A:-0.775280932958;PAX4:-0.813481086352;RREB1:-0.815038627607;ZNF148:-0.820011632364;ALX1:-0.825910515079;GATA6:-0.844200730734;CUX2:-0.844470068139;RFX1:-0.847812457197;POU2F1..3:-0.8794506669;MYOD1:-0.892500433011;POU6F1:-0.921798822496;TFAP2B:-0.995923144099;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01260495355;TOPORS:-1.01847583709;NKX3-1:-1.02989063977;FOXL1:-1.03894744975;RORA:-1.06330727051;MTE{core}:-1.06602501991;SP1:-1.07310834692;NKX2-2,8:-1.09733109661;FOX{I1,J2}:-1.12818731374;TP53:-1.14047670604;MTF1:-1.14064499766;NR3C1:-1.15253760178;EBF1:-1.17791619046;MAZ:-1.17857715217;ZFP161:-1.19921116312;LMO2:-1.20917664664;MYBL2:-1.21855543128;ZBTB6:-1.22740589911;DBP:-1.22830893107;FOXQ1:-1.23986962275;SOX5:-1.24945202726;BREu{core}:-1.27085875759;PAX6:-1.28148618516;ZEB1:-1.29047442477;CRX:-1.32663908828;GTF2I:-1.33530789305;HOXA9_MEIS1:-1.33771337062;TEF:-1.350947929;GZF1:-1.35769839878;GCM1,2:-1.36678623815;KLF4:-1.38255225422;UFEwm:-1.38869945515;TBX4,5:-1.39805612943;XCPE1{core}:-1.40561884896;NKX2-3_NKX2-5:-1.41607365449;SNAI1..3:-1.42548186216;TLX1..3_NFIC{dimer}:-1.42830895858;GTF2A1,2:-1.45376541666;AIRE:-1.5159143334;TEAD1:-1.53364436257;E2F1..5:-1.54179016221;PAX5:-1.56236869029;TFDP1:-1.5709267597;ZIC1..3:-1.59607272448;ELK1,4_GABP{A,B1}:-1.60198189874;NR5A1,2:-1.65090567805;HAND1,2:-1.67172663285;HIC1:-1.67278614722;YY1:-1.73340872247;EVI1:-1.73353819749;SOX{8,9,10}:-1.73740659586;CDC5L:-1.84244406019;AR:-1.92992649852;NKX2-1,4:-1.95936928631;T:-1.96451154925;ONECUT1,2:-1.9826533829;bHLH_family:-1.98296191908;GFI1B:-1.98497963519;ADNP_IRX_SIX_ZHX:-2.0459249386;ZNF384:-2.05030329197;HOX{A4,D4}:-2.07756429774;ZNF423:-2.09421362714;NFY{A,B,C}:-2.24926668234;GFI1:-2.26652769318;NRF1:-2.35487193675;SOX17:-2.41418372761;POU3F1..4:-2.59000270507;LEF1_TCF7_TCF7L1,2:-2.72512046823;LHX3,4:-2.85962971112;PBX1:-2.87344375237;ZNF143:-2.8797071253;ARID5B:-3.14837698233 | |top_motifs=STAT2,4,6:5.11984081227;STAT1,3:4.46933375631;IRF7:4.19187455534;IRF1,2:3.753367067;STAT5{A,B}:3.20571163191;CEBPA,B_DDIT3:3.11980719592;EP300:2.92177581893;SPIB:2.73823543167;SPI1:2.61376481887;NFE2L2:2.60203836357;NANOG{mouse}:2.5134441175;NFE2:2.45252553549;PAX2:2.40151406391;FOSL2:2.37672951723;ETS1,2:2.19518831452;FOXN1:2.19422831478;SREBF1,2:2.17040548654;DMAP1_NCOR{1,2}_SMARC:2.02779701575;HLF:2.02508426661;FOXP3:1.95452028118;FOS_FOS{B,L1}_JUN{B,D}:1.81605959918;BACH2:1.80442102504;NFIL3:1.76600484738;NR1H4:1.61236023102;ELF1,2,4:1.5940092459;RUNX1..3:1.53444076353;NFKB1_REL_RELA:1.48795537917;ATF5_CREB3:1.48231838419;TLX2:1.44717221104;ATF4:1.39456500693;HMX1:1.36577954282;ATF6:1.33661549607;NR6A1:1.30664693297;HSF1,2:1.23907685764;TGIF1:1.23648042787;HIF1A:1.13638819053;ALX4:1.09857470182;TFCP2:1.03683055928;HBP1_HMGB_SSRP1_UBTF:0.99492090151;PDX1:0.959199394152;NFE2L1:0.953624406924;CREB1:0.858775908333;SPZ1:0.798030278199;BPTF:0.784772604631;ATF2:0.761676862813;ESRRA:0.722392599703;SMAD1..7,9:0.694414071621;MAFB:0.651962371421;HMGA1,2:0.616130821789;ZBTB16:0.604911525452;JUN:0.600675334255;FOX{D1,D2}:0.558578484628;GATA4:0.493895557281;FOX{F1,F2,J1}:0.4049533894;RXRA_VDR{dimer}:0.402319163205;PPARG:0.385942595518;NFATC1..3:0.341533404042;RBPJ:0.312607759161;FOXO1,3,4:0.25933010476;GLI1..3:0.224247079045;RFX2..5_RFXANK_RFXAP:0.200980463989;AHR_ARNT_ARNT2:0.184732254632;EN1,2:0.156595987245;NANOG:0.149867255394;CDX1,2,4:0.142388682476;SRF:0.129656853557;PAX3,7:0.113748500467;XBP1:0.102751571685;PITX1..3:0.101466704497;VSX1,2:0.100805536651;PRDM1:0.0472164493685;IKZF2:-0.0388823809539;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0737912916906;RXR{A,B,G}:-0.0888419727827;MYB:-0.0912909554921;NKX3-2:-0.166409635742;ESR1:-0.197427890544;NFIX:-0.236026946067;MYFfamily:-0.267302914845;TFAP4:-0.305515193925;IKZF1:-0.328490199052;HES1:-0.337741967153;NKX6-1,2:-0.341925862482;FOXP1:-0.365709062843;FOXM1:-0.368903848869;OCT4_SOX2{dimer}:-0.411568325906;HNF4A_NR2F1,2:-0.416136340192;PAX1,9:-0.417664364139;ZNF238:-0.46484664159;TBP:-0.473888541555;REST:-0.511370186738;POU1F1:-0.524737360013;EGR1..3:-0.527619709755;HOX{A6,A7,B6,B7}:-0.530937904091;MZF1:-0.549544382772;MEF2{A,B,C,D}:-0.593009208664;PATZ1:-0.602313393229;PAX8:-0.606192109732;FOXD3:-0.622928378184;POU5F1:-0.663317625432;SOX2:-0.678927758186;TAL1_TCF{3,4,12}:-0.687383306047;NHLH1,2:-0.700355695995;FOXA2:-0.709573417798;TFAP2{A,C}:-0.716221656273;PRRX1,2:-0.741628157128;HOX{A5,B5}:-0.757327987361;MED-1{core}:-0.773636397934;HNF1A:-0.775280932958;PAX4:-0.813481086352;RREB1:-0.815038627607;ZNF148:-0.820011632364;ALX1:-0.825910515079;GATA6:-0.844200730734;CUX2:-0.844470068139;RFX1:-0.847812457197;POU2F1..3:-0.8794506669;MYOD1:-0.892500433011;POU6F1:-0.921798822496;TFAP2B:-0.995923144099;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01260495355;TOPORS:-1.01847583709;NKX3-1:-1.02989063977;FOXL1:-1.03894744975;RORA:-1.06330727051;MTE{core}:-1.06602501991;SP1:-1.07310834692;NKX2-2,8:-1.09733109661;FOX{I1,J2}:-1.12818731374;TP53:-1.14047670604;MTF1:-1.14064499766;NR3C1:-1.15253760178;EBF1:-1.17791619046;MAZ:-1.17857715217;ZFP161:-1.19921116312;LMO2:-1.20917664664;MYBL2:-1.21855543128;ZBTB6:-1.22740589911;DBP:-1.22830893107;FOXQ1:-1.23986962275;SOX5:-1.24945202726;BREu{core}:-1.27085875759;PAX6:-1.28148618516;ZEB1:-1.29047442477;CRX:-1.32663908828;GTF2I:-1.33530789305;HOXA9_MEIS1:-1.33771337062;TEF:-1.350947929;GZF1:-1.35769839878;GCM1,2:-1.36678623815;KLF4:-1.38255225422;UFEwm:-1.38869945515;TBX4,5:-1.39805612943;XCPE1{core}:-1.40561884896;NKX2-3_NKX2-5:-1.41607365449;SNAI1..3:-1.42548186216;TLX1..3_NFIC{dimer}:-1.42830895858;GTF2A1,2:-1.45376541666;AIRE:-1.5159143334;TEAD1:-1.53364436257;E2F1..5:-1.54179016221;PAX5:-1.56236869029;TFDP1:-1.5709267597;ZIC1..3:-1.59607272448;ELK1,4_GABP{A,B1}:-1.60198189874;NR5A1,2:-1.65090567805;HAND1,2:-1.67172663285;HIC1:-1.67278614722;YY1:-1.73340872247;EVI1:-1.73353819749;SOX{8,9,10}:-1.73740659586;CDC5L:-1.84244406019;AR:-1.92992649852;NKX2-1,4:-1.95936928631;T:-1.96451154925;ONECUT1,2:-1.9826533829;bHLH_family:-1.98296191908;GFI1B:-1.98497963519;ADNP_IRX_SIX_ZHX:-2.0459249386;ZNF384:-2.05030329197;HOX{A4,D4}:-2.07756429774;ZNF423:-2.09421362714;NFY{A,B,C}:-2.24926668234;GFI1:-2.26652769318;NRF1:-2.35487193675;SOX17:-2.41418372761;POU3F1..4:-2.59000270507;LEF1_TCF7_TCF7L1,2:-2.72512046823;LHX3,4:-2.85962971112;PBX1:-2.87344375237;ZNF143:-2.8797071253;ARID5B:-3.14837698233 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11881-125C9;search_select_hide=table117:FF:11881-125C9 | |||
}} | }} |
Latest revision as of 18:26, 4 June 2020
Name: | CD14+ monocytes - treated with IFN + N-hexane, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13490 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13490
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13490
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.112 |
10 | 10 | 0.0238 |
100 | 100 | 0.813 |
101 | 101 | 0.845 |
102 | 102 | 0.586 |
103 | 103 | 0.244 |
104 | 104 | 0.622 |
105 | 105 | 0.269 |
106 | 106 | 3.16887e-4 |
107 | 107 | 0.218 |
108 | 108 | 0.992 |
109 | 109 | 0.191 |
11 | 11 | 0.14 |
110 | 110 | 0.177 |
111 | 111 | 0.0717 |
112 | 112 | 0.327 |
113 | 113 | 0.53 |
114 | 114 | 0.00884 |
115 | 115 | 0.18 |
116 | 116 | 0.865 |
117 | 117 | 0.0808 |
118 | 118 | 0.22 |
119 | 119 | 0.153 |
12 | 12 | 0.415 |
120 | 120 | 0.477 |
121 | 121 | 0.586 |
122 | 122 | 0.552 |
123 | 123 | 0.196 |
124 | 124 | 0.792 |
125 | 125 | 0.507 |
126 | 126 | 0.297 |
127 | 127 | 0.31 |
128 | 128 | 0.0324 |
129 | 129 | 0.426 |
13 | 13 | 0.171 |
130 | 130 | 0.143 |
131 | 131 | 0.411 |
132 | 132 | 0.113 |
133 | 133 | 0.908 |
134 | 134 | 0.469 |
135 | 135 | 0.406 |
136 | 136 | 0.913 |
137 | 137 | 0.0135 |
138 | 138 | 0.134 |
139 | 139 | 0.0663 |
14 | 14 | 0.442 |
140 | 140 | 0.311 |
141 | 141 | 0.192 |
142 | 142 | 0.298 |
143 | 143 | 0.0432 |
144 | 144 | 0.797 |
145 | 145 | 0.504 |
146 | 146 | 0.702 |
147 | 147 | 0.417 |
148 | 148 | 0.0127 |
149 | 149 | 0.768 |
15 | 15 | 0.144 |
150 | 150 | 0.453 |
151 | 151 | 0.256 |
152 | 152 | 0.0973 |
153 | 153 | 0.664 |
154 | 154 | 0.479 |
155 | 155 | 0.747 |
156 | 156 | 0.53 |
157 | 157 | 0.61 |
158 | 158 | 0.0981 |
159 | 159 | 0.808 |
16 | 16 | 0.34 |
160 | 160 | 0.46 |
161 | 161 | 0.499 |
162 | 162 | 0.308 |
163 | 163 | 0.287 |
164 | 164 | 0.207 |
165 | 165 | 0.0618 |
166 | 166 | 0.63 |
167 | 167 | 0.291 |
168 | 168 | 0.223 |
169 | 169 | 0.00743 |
17 | 17 | 0.23 |
18 | 18 | 0.178 |
19 | 19 | 0.265 |
2 | 2 | 0.92 |
20 | 20 | 0.389 |
21 | 21 | 0.396 |
22 | 22 | 0.197 |
23 | 23 | 0.031 |
24 | 24 | 0.224 |
25 | 25 | 0.354 |
26 | 26 | 0.0649 |
27 | 27 | 0.805 |
28 | 28 | 0.476 |
29 | 29 | 0.304 |
3 | 3 | 0.084 |
30 | 30 | 0.617 |
31 | 31 | 0.846 |
32 | 32 | 0.8 |
33 | 33 | 0.347 |
34 | 34 | 0.497 |
35 | 35 | 0.192 |
36 | 36 | 0.134 |
37 | 37 | 0.0687 |
38 | 38 | 0.467 |
39 | 39 | 0.786 |
4 | 4 | 0.894 |
40 | 40 | 0.247 |
41 | 41 | 0.0499 |
42 | 42 | 0.356 |
43 | 43 | 0.0392 |
44 | 44 | 0.655 |
45 | 45 | 0.771 |
46 | 46 | 0.162 |
47 | 47 | 0.449 |
48 | 48 | 0.42 |
49 | 49 | 0.123 |
5 | 5 | 0.175 |
50 | 50 | 0.95 |
51 | 51 | 0.343 |
52 | 52 | 0.245 |
53 | 53 | 0.352 |
54 | 54 | 0.283 |
55 | 55 | 0.358 |
56 | 56 | 0.685 |
57 | 57 | 0.844 |
58 | 58 | 0.11 |
59 | 59 | 0.183 |
6 | 6 | 0.716 |
60 | 60 | 0.0249 |
61 | 61 | 0.65 |
62 | 62 | 0.0354 |
63 | 63 | 0.442 |
64 | 64 | 0.489 |
65 | 65 | 0.237 |
66 | 66 | 0.267 |
67 | 67 | 0.478 |
68 | 68 | 0.825 |
69 | 69 | 0.605 |
7 | 7 | 0.304 |
70 | 70 | 0.0187 |
71 | 71 | 0.0517 |
72 | 72 | 0.115 |
73 | 73 | 0.105 |
74 | 74 | 0.125 |
75 | 75 | 0.114 |
76 | 76 | 0.382 |
77 | 77 | 0.401 |
78 | 78 | 0.105 |
79 | 79 | 0.0563 |
8 | 8 | 0.387 |
80 | 80 | 0.147 |
81 | 81 | 0.328 |
82 | 82 | 0.105 |
83 | 83 | 0.394 |
84 | 84 | 0.43 |
85 | 85 | 0.0171 |
86 | 86 | 0.0357 |
87 | 87 | 0.496 |
88 | 88 | 0.529 |
89 | 89 | 0.294 |
9 | 9 | 0.275 |
90 | 90 | 0.0783 |
91 | 91 | 0.333 |
92 | 92 | 0.175 |
93 | 93 | 0.176 |
94 | 94 | 0.049 |
95 | 95 | 0.455 |
96 | 96 | 0.318 |
97 | 97 | 0.768 |
98 | 98 | 0.075 |
99 | 99 | 0.122 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13490
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011443 CD14-positive monocytes - treated with IFN + N-hexane sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000629 (IFN and N-hexane treatment sample)
0011443 (CD14-positive monocytes - treated with IFN + N-hexane sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)