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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00005007
|accession_numbers=CAGE;DRX008152;DRR009024;DRZ000449;DRZ001834
|accession_numbers=CAGE;DRX008152;DRR009024;DRZ000449;DRZ001834;DRZ011799;DRZ013184
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|ancestors_in_anatomy_facet=
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
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|fonse_treatment_closure=EFO:0000369,FF:0000629,FF:0011443,FF:11881-125C9
|fonse_treatment_closure=EFO:0000369,FF:0000629,FF:0011443,FF:11881-125C9
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor3.CNhs13490.11881-125C9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor3.CNhs13490.11881-125C9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor3.CNhs13490.11881-125C9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor3.CNhs13490.11881-125C9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor3.CNhs13490.11881-125C9.hg38.nobarcode.ctss.bed.gz
|id=FF:11881-125C9
|id=FF:11881-125C9
|is_a=EFO:0002091;;FF:0011443
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Line 47: Line 52:
|library_id=CNhs13490
|library_id=CNhs13490
|library_id_phase_based=2:CNhs13490
|library_id_phase_based=2:CNhs13490
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11881
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11881
|name=CD14+ monocytes - treated with IFN + N-hexane, donor3
|name=CD14+ monocytes - treated with IFN + N-hexane, donor3
|namespace=
|namespace=
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|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 91: Line 101:
|top_motifs=STAT2,4,6:5.11984081227;STAT1,3:4.46933375631;IRF7:4.19187455534;IRF1,2:3.753367067;STAT5{A,B}:3.20571163191;CEBPA,B_DDIT3:3.11980719592;EP300:2.92177581893;SPIB:2.73823543167;SPI1:2.61376481887;NFE2L2:2.60203836357;NANOG{mouse}:2.5134441175;NFE2:2.45252553549;PAX2:2.40151406391;FOSL2:2.37672951723;ETS1,2:2.19518831452;FOXN1:2.19422831478;SREBF1,2:2.17040548654;DMAP1_NCOR{1,2}_SMARC:2.02779701575;HLF:2.02508426661;FOXP3:1.95452028118;FOS_FOS{B,L1}_JUN{B,D}:1.81605959918;BACH2:1.80442102504;NFIL3:1.76600484738;NR1H4:1.61236023102;ELF1,2,4:1.5940092459;RUNX1..3:1.53444076353;NFKB1_REL_RELA:1.48795537917;ATF5_CREB3:1.48231838419;TLX2:1.44717221104;ATF4:1.39456500693;HMX1:1.36577954282;ATF6:1.33661549607;NR6A1:1.30664693297;HSF1,2:1.23907685764;TGIF1:1.23648042787;HIF1A:1.13638819053;ALX4:1.09857470182;TFCP2:1.03683055928;HBP1_HMGB_SSRP1_UBTF:0.99492090151;PDX1:0.959199394152;NFE2L1:0.953624406924;CREB1:0.858775908333;SPZ1:0.798030278199;BPTF:0.784772604631;ATF2:0.761676862813;ESRRA:0.722392599703;SMAD1..7,9:0.694414071621;MAFB:0.651962371421;HMGA1,2:0.616130821789;ZBTB16:0.604911525452;JUN:0.600675334255;FOX{D1,D2}:0.558578484628;GATA4:0.493895557281;FOX{F1,F2,J1}:0.4049533894;RXRA_VDR{dimer}:0.402319163205;PPARG:0.385942595518;NFATC1..3:0.341533404042;RBPJ:0.312607759161;FOXO1,3,4:0.25933010476;GLI1..3:0.224247079045;RFX2..5_RFXANK_RFXAP:0.200980463989;AHR_ARNT_ARNT2:0.184732254632;EN1,2:0.156595987245;NANOG:0.149867255394;CDX1,2,4:0.142388682476;SRF:0.129656853557;PAX3,7:0.113748500467;XBP1:0.102751571685;PITX1..3:0.101466704497;VSX1,2:0.100805536651;PRDM1:0.0472164493685;IKZF2:-0.0388823809539;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0737912916906;RXR{A,B,G}:-0.0888419727827;MYB:-0.0912909554921;NKX3-2:-0.166409635742;ESR1:-0.197427890544;NFIX:-0.236026946067;MYFfamily:-0.267302914845;TFAP4:-0.305515193925;IKZF1:-0.328490199052;HES1:-0.337741967153;NKX6-1,2:-0.341925862482;FOXP1:-0.365709062843;FOXM1:-0.368903848869;OCT4_SOX2{dimer}:-0.411568325906;HNF4A_NR2F1,2:-0.416136340192;PAX1,9:-0.417664364139;ZNF238:-0.46484664159;TBP:-0.473888541555;REST:-0.511370186738;POU1F1:-0.524737360013;EGR1..3:-0.527619709755;HOX{A6,A7,B6,B7}:-0.530937904091;MZF1:-0.549544382772;MEF2{A,B,C,D}:-0.593009208664;PATZ1:-0.602313393229;PAX8:-0.606192109732;FOXD3:-0.622928378184;POU5F1:-0.663317625432;SOX2:-0.678927758186;TAL1_TCF{3,4,12}:-0.687383306047;NHLH1,2:-0.700355695995;FOXA2:-0.709573417798;TFAP2{A,C}:-0.716221656273;PRRX1,2:-0.741628157128;HOX{A5,B5}:-0.757327987361;MED-1{core}:-0.773636397934;HNF1A:-0.775280932958;PAX4:-0.813481086352;RREB1:-0.815038627607;ZNF148:-0.820011632364;ALX1:-0.825910515079;GATA6:-0.844200730734;CUX2:-0.844470068139;RFX1:-0.847812457197;POU2F1..3:-0.8794506669;MYOD1:-0.892500433011;POU6F1:-0.921798822496;TFAP2B:-0.995923144099;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01260495355;TOPORS:-1.01847583709;NKX3-1:-1.02989063977;FOXL1:-1.03894744975;RORA:-1.06330727051;MTE{core}:-1.06602501991;SP1:-1.07310834692;NKX2-2,8:-1.09733109661;FOX{I1,J2}:-1.12818731374;TP53:-1.14047670604;MTF1:-1.14064499766;NR3C1:-1.15253760178;EBF1:-1.17791619046;MAZ:-1.17857715217;ZFP161:-1.19921116312;LMO2:-1.20917664664;MYBL2:-1.21855543128;ZBTB6:-1.22740589911;DBP:-1.22830893107;FOXQ1:-1.23986962275;SOX5:-1.24945202726;BREu{core}:-1.27085875759;PAX6:-1.28148618516;ZEB1:-1.29047442477;CRX:-1.32663908828;GTF2I:-1.33530789305;HOXA9_MEIS1:-1.33771337062;TEF:-1.350947929;GZF1:-1.35769839878;GCM1,2:-1.36678623815;KLF4:-1.38255225422;UFEwm:-1.38869945515;TBX4,5:-1.39805612943;XCPE1{core}:-1.40561884896;NKX2-3_NKX2-5:-1.41607365449;SNAI1..3:-1.42548186216;TLX1..3_NFIC{dimer}:-1.42830895858;GTF2A1,2:-1.45376541666;AIRE:-1.5159143334;TEAD1:-1.53364436257;E2F1..5:-1.54179016221;PAX5:-1.56236869029;TFDP1:-1.5709267597;ZIC1..3:-1.59607272448;ELK1,4_GABP{A,B1}:-1.60198189874;NR5A1,2:-1.65090567805;HAND1,2:-1.67172663285;HIC1:-1.67278614722;YY1:-1.73340872247;EVI1:-1.73353819749;SOX{8,9,10}:-1.73740659586;CDC5L:-1.84244406019;AR:-1.92992649852;NKX2-1,4:-1.95936928631;T:-1.96451154925;ONECUT1,2:-1.9826533829;bHLH_family:-1.98296191908;GFI1B:-1.98497963519;ADNP_IRX_SIX_ZHX:-2.0459249386;ZNF384:-2.05030329197;HOX{A4,D4}:-2.07756429774;ZNF423:-2.09421362714;NFY{A,B,C}:-2.24926668234;GFI1:-2.26652769318;NRF1:-2.35487193675;SOX17:-2.41418372761;POU3F1..4:-2.59000270507;LEF1_TCF7_TCF7L1,2:-2.72512046823;LHX3,4:-2.85962971112;PBX1:-2.87344375237;ZNF143:-2.8797071253;ARID5B:-3.14837698233
|top_motifs=STAT2,4,6:5.11984081227;STAT1,3:4.46933375631;IRF7:4.19187455534;IRF1,2:3.753367067;STAT5{A,B}:3.20571163191;CEBPA,B_DDIT3:3.11980719592;EP300:2.92177581893;SPIB:2.73823543167;SPI1:2.61376481887;NFE2L2:2.60203836357;NANOG{mouse}:2.5134441175;NFE2:2.45252553549;PAX2:2.40151406391;FOSL2:2.37672951723;ETS1,2:2.19518831452;FOXN1:2.19422831478;SREBF1,2:2.17040548654;DMAP1_NCOR{1,2}_SMARC:2.02779701575;HLF:2.02508426661;FOXP3:1.95452028118;FOS_FOS{B,L1}_JUN{B,D}:1.81605959918;BACH2:1.80442102504;NFIL3:1.76600484738;NR1H4:1.61236023102;ELF1,2,4:1.5940092459;RUNX1..3:1.53444076353;NFKB1_REL_RELA:1.48795537917;ATF5_CREB3:1.48231838419;TLX2:1.44717221104;ATF4:1.39456500693;HMX1:1.36577954282;ATF6:1.33661549607;NR6A1:1.30664693297;HSF1,2:1.23907685764;TGIF1:1.23648042787;HIF1A:1.13638819053;ALX4:1.09857470182;TFCP2:1.03683055928;HBP1_HMGB_SSRP1_UBTF:0.99492090151;PDX1:0.959199394152;NFE2L1:0.953624406924;CREB1:0.858775908333;SPZ1:0.798030278199;BPTF:0.784772604631;ATF2:0.761676862813;ESRRA:0.722392599703;SMAD1..7,9:0.694414071621;MAFB:0.651962371421;HMGA1,2:0.616130821789;ZBTB16:0.604911525452;JUN:0.600675334255;FOX{D1,D2}:0.558578484628;GATA4:0.493895557281;FOX{F1,F2,J1}:0.4049533894;RXRA_VDR{dimer}:0.402319163205;PPARG:0.385942595518;NFATC1..3:0.341533404042;RBPJ:0.312607759161;FOXO1,3,4:0.25933010476;GLI1..3:0.224247079045;RFX2..5_RFXANK_RFXAP:0.200980463989;AHR_ARNT_ARNT2:0.184732254632;EN1,2:0.156595987245;NANOG:0.149867255394;CDX1,2,4:0.142388682476;SRF:0.129656853557;PAX3,7:0.113748500467;XBP1:0.102751571685;PITX1..3:0.101466704497;VSX1,2:0.100805536651;PRDM1:0.0472164493685;IKZF2:-0.0388823809539;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0737912916906;RXR{A,B,G}:-0.0888419727827;MYB:-0.0912909554921;NKX3-2:-0.166409635742;ESR1:-0.197427890544;NFIX:-0.236026946067;MYFfamily:-0.267302914845;TFAP4:-0.305515193925;IKZF1:-0.328490199052;HES1:-0.337741967153;NKX6-1,2:-0.341925862482;FOXP1:-0.365709062843;FOXM1:-0.368903848869;OCT4_SOX2{dimer}:-0.411568325906;HNF4A_NR2F1,2:-0.416136340192;PAX1,9:-0.417664364139;ZNF238:-0.46484664159;TBP:-0.473888541555;REST:-0.511370186738;POU1F1:-0.524737360013;EGR1..3:-0.527619709755;HOX{A6,A7,B6,B7}:-0.530937904091;MZF1:-0.549544382772;MEF2{A,B,C,D}:-0.593009208664;PATZ1:-0.602313393229;PAX8:-0.606192109732;FOXD3:-0.622928378184;POU5F1:-0.663317625432;SOX2:-0.678927758186;TAL1_TCF{3,4,12}:-0.687383306047;NHLH1,2:-0.700355695995;FOXA2:-0.709573417798;TFAP2{A,C}:-0.716221656273;PRRX1,2:-0.741628157128;HOX{A5,B5}:-0.757327987361;MED-1{core}:-0.773636397934;HNF1A:-0.775280932958;PAX4:-0.813481086352;RREB1:-0.815038627607;ZNF148:-0.820011632364;ALX1:-0.825910515079;GATA6:-0.844200730734;CUX2:-0.844470068139;RFX1:-0.847812457197;POU2F1..3:-0.8794506669;MYOD1:-0.892500433011;POU6F1:-0.921798822496;TFAP2B:-0.995923144099;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01260495355;TOPORS:-1.01847583709;NKX3-1:-1.02989063977;FOXL1:-1.03894744975;RORA:-1.06330727051;MTE{core}:-1.06602501991;SP1:-1.07310834692;NKX2-2,8:-1.09733109661;FOX{I1,J2}:-1.12818731374;TP53:-1.14047670604;MTF1:-1.14064499766;NR3C1:-1.15253760178;EBF1:-1.17791619046;MAZ:-1.17857715217;ZFP161:-1.19921116312;LMO2:-1.20917664664;MYBL2:-1.21855543128;ZBTB6:-1.22740589911;DBP:-1.22830893107;FOXQ1:-1.23986962275;SOX5:-1.24945202726;BREu{core}:-1.27085875759;PAX6:-1.28148618516;ZEB1:-1.29047442477;CRX:-1.32663908828;GTF2I:-1.33530789305;HOXA9_MEIS1:-1.33771337062;TEF:-1.350947929;GZF1:-1.35769839878;GCM1,2:-1.36678623815;KLF4:-1.38255225422;UFEwm:-1.38869945515;TBX4,5:-1.39805612943;XCPE1{core}:-1.40561884896;NKX2-3_NKX2-5:-1.41607365449;SNAI1..3:-1.42548186216;TLX1..3_NFIC{dimer}:-1.42830895858;GTF2A1,2:-1.45376541666;AIRE:-1.5159143334;TEAD1:-1.53364436257;E2F1..5:-1.54179016221;PAX5:-1.56236869029;TFDP1:-1.5709267597;ZIC1..3:-1.59607272448;ELK1,4_GABP{A,B1}:-1.60198189874;NR5A1,2:-1.65090567805;HAND1,2:-1.67172663285;HIC1:-1.67278614722;YY1:-1.73340872247;EVI1:-1.73353819749;SOX{8,9,10}:-1.73740659586;CDC5L:-1.84244406019;AR:-1.92992649852;NKX2-1,4:-1.95936928631;T:-1.96451154925;ONECUT1,2:-1.9826533829;bHLH_family:-1.98296191908;GFI1B:-1.98497963519;ADNP_IRX_SIX_ZHX:-2.0459249386;ZNF384:-2.05030329197;HOX{A4,D4}:-2.07756429774;ZNF423:-2.09421362714;NFY{A,B,C}:-2.24926668234;GFI1:-2.26652769318;NRF1:-2.35487193675;SOX17:-2.41418372761;POU3F1..4:-2.59000270507;LEF1_TCF7_TCF7L1,2:-2.72512046823;LHX3,4:-2.85962971112;PBX1:-2.87344375237;ZNF143:-2.8797071253;ARID5B:-3.14837698233
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11881-125C9;search_select_hide=table117:FF:11881-125C9
}}
}}

Latest revision as of 18:26, 4 June 2020

Name:CD14+ monocytes - treated with IFN + N-hexane, donor3
Species:Human (Homo sapiens)
Library ID:CNhs13490
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexfemale
age21
cell typemonocyte
cell lineNA
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberD5-2
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005007
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13490 CAGE DRX008152 DRR009024
Accession ID Hg19

Library idBAMCTSS
CNhs13490 DRZ000449 DRZ001834
Accession ID Hg38

Library idBAMCTSS
CNhs13490 DRZ011799 DRZ013184
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
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Hg38
BAMCTSS
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Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.154
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.1
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.543
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.47
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0109
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.154
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.755
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0313
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.281
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.154
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.443
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.405
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.843
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.12
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.268
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.231
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.154
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0901
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0.358
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.993
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0.358
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.865
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.551
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.551
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.867
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.366
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.154
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.388
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.496
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0.644
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.268
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.709
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.605
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.154
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.816
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.429
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.154
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.6
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.432
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.154
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.738
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0.644
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.154
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.154
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.268
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.268
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13490

Jaspar motifP-value
MA0002.22.50005e-8
MA0003.10.317
MA0004.10.551
MA0006.10.953
MA0007.10.735
MA0009.10.373
MA0014.10.649
MA0017.10.0229
MA0018.20.487
MA0019.10.738
MA0024.10.00162
MA0025.10.022
MA0027.10.93
MA0028.10.154
MA0029.10.296
MA0030.10.445
MA0031.10.837
MA0035.20.341
MA0038.10.047
MA0039.20.994
MA0040.10.107
MA0041.10.98
MA0042.10.806
MA0043.10.00112
MA0046.10.174
MA0047.20.592
MA0048.10.965
MA0050.18.46872e-25
MA0051.15.2167e-16
MA0052.10.451
MA0055.10.508
MA0057.10.901
MA0058.10.35
MA0059.10.492
MA0060.12.46421e-11
MA0061.12.7522e-6
MA0062.20.344
MA0065.20.00727
MA0066.10.0784
MA0067.12.55508e-4
MA0068.10.581
MA0069.10.527
MA0070.10.00211
MA0071.10.396
MA0072.10.834
MA0073.10.391
MA0074.10.256
MA0076.10.185
MA0077.10.171
MA0078.10.503
MA0079.20.617
MA0080.27.8663e-15
MA0081.12.55599e-4
MA0083.10.479
MA0084.10.914
MA0087.10.855
MA0088.10.558
MA0090.10.122
MA0091.10.466
MA0092.10.186
MA0093.10.622
MA0099.22.63568e-32
MA0100.10.778
MA0101.14.83733e-5
MA0102.29.51198e-9
MA0103.10.39
MA0104.20.981
MA0105.12.44481e-8
MA0106.10.741
MA0107.11.64107e-6
MA0108.20.0323
MA0111.10.455
MA0112.28.34784e-5
MA0113.10.538
MA0114.10.158
MA0115.10.839
MA0116.12.66716e-4
MA0117.10.224
MA0119.10.358
MA0122.10.684
MA0124.10.872
MA0125.10.442
MA0131.10.351
MA0135.10.981
MA0136.14.49022e-15
MA0137.21.02123e-18
MA0138.20.888
MA0139.10.917
MA0140.10.278
MA0141.10.0885
MA0142.10.577
MA0143.10.59
MA0144.13.47101e-7
MA0145.10.229
MA0146.10.0821
MA0147.10.941
MA0148.10.77
MA0149.10.299
MA0150.12.27683e-14
MA0152.10.94
MA0153.10.0345
MA0154.10.00232
MA0155.10.829
MA0156.15.55096e-10
MA0157.10.507
MA0159.10.0169
MA0160.10.0279
MA0162.10.944
MA0163.11.05913e-6
MA0164.10.83
MA0258.10.00209
MA0259.10.543



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13490

Novel motifP-value
10.112
100.0238
1000.813
1010.845
1020.586
1030.244
1040.622
1050.269
1063.16887e-4
1070.218
1080.992
1090.191
110.14
1100.177
1110.0717
1120.327
1130.53
1140.00884
1150.18
1160.865
1170.0808
1180.22
1190.153
120.415
1200.477
1210.586
1220.552
1230.196
1240.792
1250.507
1260.297
1270.31
1280.0324
1290.426
130.171
1300.143
1310.411
1320.113
1330.908
1340.469
1350.406
1360.913
1370.0135
1380.134
1390.0663
140.442
1400.311
1410.192
1420.298
1430.0432
1440.797
1450.504
1460.702
1470.417
1480.0127
1490.768
150.144
1500.453
1510.256
1520.0973
1530.664
1540.479
1550.747
1560.53
1570.61
1580.0981
1590.808
160.34
1600.46
1610.499
1620.308
1630.287
1640.207
1650.0618
1660.63
1670.291
1680.223
1690.00743
170.23
180.178
190.265
20.92
200.389
210.396
220.197
230.031
240.224
250.354
260.0649
270.805
280.476
290.304
30.084
300.617
310.846
320.8
330.347
340.497
350.192
360.134
370.0687
380.467
390.786
40.894
400.247
410.0499
420.356
430.0392
440.655
450.771
460.162
470.449
480.42
490.123
50.175
500.95
510.343
520.245
530.352
540.283
550.358
560.685
570.844
580.11
590.183
60.716
600.0249
610.65
620.0354
630.442
640.489
650.237
660.267
670.478
680.825
690.605
70.304
700.0187
710.0517
720.115
730.105
740.125
750.114
760.382
770.401
780.105
790.0563
80.387
800.147
810.328
820.105
830.394
840.43
850.0171
860.0357
870.496
880.529
890.294
90.275
900.0783
910.333
920.175
930.176
940.049
950.455
960.318
970.768
980.075
990.122



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13490


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000629 (IFN and N-hexane treatment sample)
0011443 (CD14-positive monocytes - treated with IFN + N-hexane sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

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