FF:11888-125D7: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005146 | |||
|accession_numbers=CAGE;DRX008143;DRR009015;DRZ000440;DRZ001825;DRZ011790;DRZ013175 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | ||
Line 7: | Line 9: | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.65!4421.67!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.67!468.58!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.66!456.39!IRF8;;chr7:115670804..115670825,-!p1@TFEC!2.54!349.40!TFEC;;chr9:102584159..102584174,+!p2@NR4A3!2.28!327.73!NR4A3;;chr12:72056800..72056834,+!p1@THAP2!2.25!237.00!THAP2;;chr12:54778471..54778528,-!p1@ZNF385A!2.25!178.76!ZNF385A;;chr3:101546827..101546847,+!p2@NFKBIZ!2.24!238.35!NFKBIZ;;chr19:45971246..45971265,+!p1@FOSB!2.20!2727.49!FOSB;;chr6:106534192..106534224,+!p1@PRDM1!2.20!422.53!PRDM1;;chr2:157189180..157189290,-!p1@NR4A2!2.17!724.53!NR4A2;;chr11:47399947..47399961,-!p3@SPI1!2.15!139.49!SPI1;;chr14:35872453..35872485,-!p2@NFKBIA!2.13!314.19!NFKBIA;;chr14:35873947..35873965,-!p1@NFKBIA!2.11!7468.77!NFKBIA;;chr10:64018918..64018936,+!p2@ZNF365!2.06!115.11!ZNF365;;chr3:101568349..101568365,+!p1@NFKBIZ!2.03!5150.27!NFKBIZ;;chr12:52445218..52445237,+!p1@NR4A1!2.03!1258.11!NR4A1;;chr21:34442439..34442455,+!p1@OLIG1!2.03!106.99!OLIG1;;chr16:31885093..31885165,+!p1@ZNF267!2.01!1455.83!ZNF267;;chr10:64576105..64576133,-!p1@EGR2!2.01!201.79!EGR2;;chr9:102584262..102584276,+!p1@NR4A3!2.00!211.27!NR4A3;;chr20:39317868..39317884,-!p1@MAFB!1.99!1068.51!MAFB;;chr10:35484053..35484076,+!p1@CREM!1.98!227.52!CREM;;chr11:47400062..47400077,-!p2@SPI1!1.98!94.80!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.96!89.38!SPI1;;chr2:70142232..70142251,+!p1@MXD1!1.95!472.64!MXD1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.92!960.17!ZC3H12A;;chr10:31288398..31288455,-!p2@ZNF438!1.92!94.80!ZNF438;;chr2:61108695..61108753,+!p1@REL!1.91!517.33!REL;;chr10:51572408..51572454,+!p3@NCOA4!1.91!440.14!NCOA4;;chr19:36391434..36391450,-!p1@NFKBID!1.91!153.03!NFKBID;;chr2:68592394..68592405,+!p2@PLEK!1.90!78.55!PLEK;;chr8:22550982..22550999,-!p1@EGR3!1.88!203.14!EGR3;;chr8:123793988..123794016,+!p1@ZHX2!1.86!121.88!ZHX2;;chrX:153305787..153305807,-!p3@MECP2!1.86!71.78!MECP2;;chr4:103422499..103422632,+!p1@NFKB1!1.85!1378.64!NFKB1;;chr11:47400032..47400043,-!p5@SPI1!1.85!69.07!SPI1;;chr22:38597987..38598021,+!p2@MAFF!1.80!361.59!MAFF;;chr10:104155659..104155676,+!p4@NFKB2!1.79!74.48!NFKB2;;chr4:83822199..83822239,+!p2@THAP9!1.78!70.42!THAP9;;chr10:104155480..104155534,+!p2@NFKB2!1.77!356.17!NFKB2;;chr2:192015701..192015743,-!p1@STAT4!1.77!78.55!STAT4;;chr20:48599506..48599526,+!p1@SNAI1!1.74!327.73!SNAI1;;chr2:145275162..145275202,-!p2@ZEB2!1.74!303.36!ZEB2;;chr6:106534230..106534254,+!p2@PRDM1!1.74!131.36!PRDM1;;chr1:212782094..212782109,+!p1@ATF3!1.73!1362.39!ATF3;;chr1:161736038..161736056,+!p4@ATF6!1.73!119.18!ATF6;;chr3:150126101..150126118,+!p6@TSC22D2!1.72!82.61!TSC22D2;;chr1:25256756..25256774,-!p1@RUNX3!1.70!89.38!RUNX3;;chr12:72056773..72056796,+!p3@THAP2!1.70!63.65!THAP2;;chr2:145271342..145271377,-!p5@ZEB2!1.70!48.75!ZEB2;;chr9:102584128..102584144,+!p3@NR4A3!1.69!89.38!NR4A3;;chr4:106066712..106066728,+!p8@TET2!1.66!44.69!TET2;;chr12:54778351..54778378,-!p6@ZNF385A!1.66!44.69!ZNF385A;;chr2:68615063..68615089,+!p4@PLEK!1.65!43.34!PLEK;;chr12:72056749..72056767,+!p6@THAP2!1.64!47.40!THAP2;;chr10:31288370..31288393,-!p3@ZNF438!1.63!41.98!ZNF438;;chr8:53373491..53373506,-!p4@ST18!1.63!41.98!ST18;;chr18:77155922..77155939,+!p1@NFATC1!1.62!108.34!NFATC1;;chr14:35872962..35873025,-!p3@NFKBIA!1.62!100.22!NFKBIA;;chr19:54058073..54058088,+!p1@ZNF331!1.61!39.27!ZNF331;;chr2:145277640..145277771,-!p1@ZEB2!1.60!491.60!ZEB2;;chr21:40177845..40177863,+!p1@ETS2!1.59!2104.53!ETS2;;chr19:54041669..54041697,+!p2@ZNF331!1.59!37.92!ZNF331;;chr21:30671235..30671253,+!p1@BACH1!1.58!444.20!BACH1;;chr3:39195037..39195069,-!p2@CSRNP1!1.58!219.39!CSRNP1;;chr7:106809470..106809481,+!p2@HBP1!1.58!51.46!HBP1;;chr10:35484090..35484104,+!p6@CREM!1.57!36.57!CREM;;chr17:38497662..38497713,+!p4@RARA!1.56!40.63!RARA;;chr4:106068026..106068084,+!p1@TET2!1.54!289.81!TET2;;chr10:104154246..104154347,+!p3@NFKB2!1.54!196.37!NFKB2;;chr6:12012249..12012266,+!p5@HIVEP1!1.54!56.88!HIVEP1;;chr5:142782823..142782854,-!p3@NR3C1!1.54!47.40!NR3C1;;chr8:81397820..81397836,+!p2@ZBTB10!1.54!41.98!ZBTB10;;chr4:106066776..106066791,+!p9@TET2!1.54!33.86!TET2;;chr9:110252035..110252057,-!p1@KLF4!1.53!502.43!KLF4;;chr10:51572339..51572376,+!p4@NCOA4!1.53!71.78!NCOA4;;chr3:12330560..12330579,+!p1@PPARG!1.53!37.92!PPARG;;chr19:36389729..36389751,-!p3@NFKBID!1.53!32.50!NFKBID;;chr2:28615716..28615733,+!p1@FOSL2!1.52!1427.40!FOSL2;;chr21:30671690..30671762,+!p2@BACH1!1.50!100.22!BACH1;;chr9:129567282..129567353,+!p1@ZBTB43!1.49!371.07!ZBTB43;;chr2:61108808..61108821,+!p3@REL!1.49!37.92!REL;;chr2:68615031..68615055,+!p3@PLEK!1.49!29.79!PLEK;;chr4:103423079..103423112,+!p4@NFKB1!1.49!29.79!NFKB1;;chr6:391743..391759,+!p1@IRF4!1.49!29.79!IRF4;;chr19:36389839..36389857,-!p4@NFKBID!1.49!29.79!NFKBID;;chr6:12012170..12012245,+!p1@HIVEP1!1.48!140.84!HIVEP1;;chr4:83821967..83821998,+!p3@THAP9!1.48!35.21!THAP9;;chr4:106066730..106066754,+!p6@TET2!1.47!28.44!TET2;;chr9:102584278..102584285,+!p5@NR4A3!1.47!28.44!NR4A3;;chr14: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NFX1!0.63!12.19!ZNFX1;;chr21:44394742..44394756,+!p2@PKNOX1!0.63!8.13!PKNOX1;;chr5:137800878..137800898,+!p6@EGR1!0.63!4.06!EGR1;;chr6:45390599..45390662,+!p11@RUNX2!0.63!4.06!RUNX2;;chr10:3818891..3818895,-!p6@KLF6!0.63!4.06!KLF6;;chr6:35310312..35310359,+!p1@PPARD!0.62!33.86!PPARD;;chr19:21950362..21950388,-!p1@ZNF100!0.62!33.86!ZNF100;;chr5:142784003..142784065,-!p2@NR3C1!0.62!31.15!NR3C1;;chr7:44925044..44925156,-!p1@PURB!0.62!29.79!PURB;;chr5:172483347..172483407,+!p1@C5orf41!0.62!28.44!CREBRF;;chr9:4300050..4300118,-!p1@GLIS3!0.62!24.38!GLIS3;;chr19:12175535..12175554,+!p1@ZNF844!0.62!20.31!ZNF844;;chr6:41040923..41040952,+!p2@NFYA!0.62!9.48!NFYA;;chr5:88179230..88179270,-!p4@MEF2C!0.62!6.77!MEF2C;;chr2:208030886..208030917,-!p4@KLF7!0.62!6.77!KLF7;;chr14:74353454..74353469,+!p4@ZNF410!0.62!6.77!ZNF410;;chr22:38598042..38598052,+!p4@MAFF!0.62!5.42!MAFF;;chr15:31619407..31619419,+!p9@KLF13!0.62!4.06!KLF13;;chr1:6684918..6684936,+!p2@THAP3!0.62!4.06!THAP3;;chr22:29196511..29196541,-!p1@XBP1!0.61!417.11!XBP1;;chr2:208031542..208031595,-!p2@KLF7!0.61!25.73!KLF7;;chr3:23986824..23986848,+!p2@NR1D2!0.61!20.31!NR1D2;;chr19:58694421..58694485,+!p1@ZNF274!0.61!18.96!ZNF274;;chr19:19496577..19496619,+!p5@GATAD2A!0.61!12.19!GATAD2A;;chr9:128509663..128509715,+!p1@PBX3!0.61!12.19!PBX3;;chr19:21203481..21203504,+!p2@ZNF430!0.61!8.13!ZNF430;;chr16:69600209..69600234,+!p4@NFAT5!0.61!4.06!NFAT5;;chr20:30795511..30795562,-!p1@PLAGL2!0.60!65.00!PLAGL2;;chr2:174828545..174828644,-!p1@SP3!0.60!55.52!SP3;;chr7:77428066..77428132,+!p2@PHTF2!0.60!23.02!PHTF2;;chr6:20403727..20403769,+!p4@E2F3!0.60!8.13!E2F3;;chr3:71630690..71630750,-!p11@FOXP1!0.60!5.42!FOXP1;;chr1:8484007..8484061,-!p13@RERE!0.60!4.06!RERE;;chr19:12163769..12163798,-!p1@ZNF878!0.60!4.06!ZNF878;;chr22:29196547..29196563,-!p2@XBP1!0.59!131.36!XBP1;;chr9:137218281..137218340,+!p1@RXRA!0.59!101.57!RXRA;;chr2:242576431..242576458,-!p3@THAP4!0.59!8.13!THAP4;;chr13:41635104..41635124,-!p6@ELF1!0.59!5.42!ELF1;;chr1:45805788..45805801,+!p6@TOE1!0.59!4.06!TOE1;;chr4:81118647..81118666,+!p1@PRDM8!0.59!4.06!PRDM8;;chr15:100106155..100106243,+!p1@MEF2A!0.58!92.09!MEF2A;;chr4:26322616..26322652,+!p1@RBPJ!0.58!74.48!RBPJ;;chr1:235491462..235491510,-!p1@ARID4B!0.58!62.30!ARID4B;;chr5:142783175..142783297,-!p1@NR3C1!0.58!47.40!NR3C1;;chr19:21203451..21203475,+!p1@ZNF430!0.58!35.21!ZNF430;;chr6:43138999..43139017,+!p2@SRF!0.58!20.31!SRF;;chr18:72922743..72922761,+!p3@TSHZ1!0.58!10.83!TSHZ1;;chr1:40627028..40627037,+!p2@RLF!0.58!4.06!RLF;;chr21:36260463..36260480,-!p9@RUNX1!0.58!4.06!RUNX1;;chr14:21566540..21566580,-!p2@ZNF219!0.58!4.06!ZNF219;;chr2:192015750..192015793,-!p2@STAT4!0.58!4.06!STAT4;;chr3:170075103..170075114,+!p5@SKIL!0.58!4.06!SKIL;;chr8:116681221..116681236,-!p3@TRPS1!0.57!9.48!TRPS1;;chr16:89787937..89787971,+!p1@ZNF276!0.57!8.13!ZNF276;;chrX:129244655..129244697,-!p4@ELF4!0.57!5.42!ELF4;;chr3:101395919..101395930,-!p4@ZBTB11!0.57!4.06!ZBTB11;;chr3:170075124..170075136,+!p4@SKIL!0.57!4.06!SKIL;;chr10:35415951..35415975,+!p8@CREM!0.57!4.06!CREM;;chr12:10865870..10865888,-!p6@CSDA!0.57!4.06!CSDA;;chr10:35416172..35416184,+!p13@CREM!0.57!2.71!CREM;;chr10:3824125..3824146,-!p12@KLF6!0.57!2.71!KLF6;;chr10:3824206..3824226,-!p10@KLF6!0.57!2.71!KLF6;;chr10:3824309..3824321,-!p15@KLF6!0.57!2.71!KLF6;;chr10:38299441..38299450,+!p3@ZNF33A!0.57!2.71!ZNF33A;;chr10:51575814..51575835,+!p8@NCOA4!0.57!2.71!NCOA4;;chr10:60144911..60144939,+!p2@TFAM!0.57!2.71!TFAM;;chr11:34642612..34642646,+!p1@EHF!0.57!2.71!EHF;;chr11:47237987..47237998,+!p5@DDB2!0.57!2.71!DDB2;;chr12:11802957..11802964,+!p8@ETV6!0.57!2.71!ETV6;;chr12:52430849..52430860,+!p23@NR4A1!0.57!2.71!NR4A1;;chr12:52449834..52449859,+!p16@NR4A1!0.57!2.71!NR4A1;;chr12:52450298..52450331,+!p11@NR4A1!0.57!2.71!NR4A1;;chr12:57911081..57911085,-!p2@DDIT3!0.57!2.71!DDIT3;;chr12:57917037..57917052,+!p9@MBD6!0.57!2.71!MBD6;;chr12:72056897..72056908,+!p12@THAP2!0.57!2.71!THAP2;;chr13:41635806..41635828,-!p14@ELF1!0.57!2.71!ELF1;;chr14:62214151..62214164,+!p11@HIF1A!0.57!2.71!HIF1A;;chrX:70712265..70712303,+!p4@TAF1!0.57!2.71!TAF1;;chrX:153305763..153305772,-!p8@MECP2!0.57!2.71!MECP2;;chr19:45974438..45974449,+!p26@FOSB!0.57!2.71!FOSB;;chr19:45977697..45977713,+!p4@FOSB!0.57!2.71!FOSB;;chr19:54041508..54041527,+!p8@ZNF331!0.57!2.71!ZNF331;;chr1:157108728..157108744,-!p5@ETV3!0.57!2.71!ETV3;;chr1:158985536..158985545,+!p18@IFI16!0.57!2.71!IFI16;;chr1:158985553..158985574,+!p14@IFI16!0.57!2.71!IFI16;;chr1:212873061..212873080,-!p4@BATF3!0.57!2.71!BATF3;;chr1:38324636..38324647,-!p3@MTF1!0.57!2.71!MTF1;;chr1:59250262..59250296,-!p5@JUN!0.57!2.71!JUN;;chr1:935277..935309,-!p6@HES4!0.57!2.71!HES4;;chr20:56195525..56195556,-!p2@ZBP1!0.57!2.71!ZBP1;;chr21:30672681..30672700,+!p19@BACH1!0.57!2.71!BACH1;;chr21:36421147..36421193,-!p10@RUNX1!0.57!2.71!RUNX1;;chr5:142780189..142780223,-!p6@NR3C1!0.57!2.71!NR3C1;;chr5:172483414..172483425,+!p3@C5orf41!0.57!2.71!CREBRF;;chr5:71803177..71803255,-!p1@ZNF366!0.57!2.71!ZNF366;;chr5:88120151..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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.65!4421.67!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.67!468.58!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.66!456.39!IRF8;;chr7:115670804..115670825,-!p1@TFEC!2.54!349.40!TFEC;;chr9:102584159..102584174,+!p2@NR4A3!2.28!327.73!NR4A3;;chr12:72056800..72056834,+!p1@THAP2!2.25!237.00!THAP2;;chr12:54778471..54778528,-!p1@ZNF385A!2.25!178.76!ZNF385A;;chr3:101546827..101546847,+!p2@NFKBIZ!2.24!238.35!NFKBIZ;;chr19:45971246..45971265,+!p1@FOSB!2.20!2727.49!FOSB;;chr6:106534192..106534224,+!p1@PRDM1!2.20!422.53!PRDM1;;chr2:157189180..157189290,-!p1@NR4A2!2.17!724.53!NR4A2;;chr11:47399947..47399961,-!p3@SPI1!2.15!139.49!SPI1;;chr14:35872453..35872485,-!p2@NFKBIA!2.13!314.19!NFKBIA;;chr14:35873947..35873965,-!p1@NFKBIA!2.11!7468.77!NFKBIA;;chr10:64018918..64018936,+!p2@ZNF365!2.06!115.11!ZNF365;;chr3:101568349..101568365,+!p1@NFKBIZ!2.03!5150.27!NFKBIZ;;chr12:52445218..52445237,+!p1@NR4A1!2.03!1258.11!NR4A1;;chr21:34442439..34442455,+!p1@OLIG1!2.03!106.99!OLIG1;;chr16:31885093..31885165,+!p1@ZNF267!2.01!1455.83!ZNF267;;chr10:64576105..64576133,-!p1@EGR2!2.01!201.79!EGR2;;chr9:102584262..102584276,+!p1@NR4A3!2.00!211.27!NR4A3;;chr20:39317868..39317884,-!p1@MAFB!1.99!1068.51!MAFB;;chr10:35484053..35484076,+!p1@CREM!1.98!227.52!CREM;;chr11:47400062..47400077,-!p2@SPI1!1.98!94.80!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.96!89.38!SPI1;;chr2:70142232..70142251,+!p1@MXD1!1.95!472.64!MXD1;;chr1:37940170..37940190,+!p1@ZC3H12A!1.92!960.17!ZC3H12A;;chr10:31288398..31288455,-!p2@ZNF438!1.92!94.80!ZNF438;;chr2:61108695..61108753,+!p1@REL!1.91!517.33!REL;;chr10:51572408..51572454,+!p3@NCOA4!1.91!440.14!NCOA4;;chr19:36391434..36391450,-!p1@NFKBID!1.91!153.03!NFKBID;;chr2:68592394..68592405,+!p2@PLEK!1.90!78.55!PLEK;;chr8:22550982..22550999,-!p1@EGR3!1.88!203.14!EGR3;;chr8:123793988..123794016,+!p1@ZHX2!1.86!121.88!ZHX2;;chrX:153305787..153305807,-!p3@MECP2!1.86!71.78!MECP2;;chr4:103422499..103422632,+!p1@NFKB1!1.85!1378.64!NFKB1;;chr11:47400032..47400043,-!p5@SPI1!1.85!69.07!SPI1;;chr22:38597987..38598021,+!p2@MAFF!1.80!361.59!MAFF;;chr10:104155659..104155676,+!p4@NFKB2!1.79!74.48!NFKB2;;chr4:83822199..83822239,+!p2@THAP9!1.78!70.42!THAP9;;chr10:104155480..104155534,+!p2@NFKB2!1.77!356.17!NFKB2;;chr2:192015701..192015743,-!p1@STAT4!1.77!78.55!STAT4;;chr20:48599506..48599526,+!p1@SNAI1!1.74!327.73!SNAI1;;chr2:145275162..145275202,-!p2@ZEB2!1.74!303.36!ZEB2;;chr6:106534230..106534254,+!p2@PRDM1!1.74!131.36!PRDM1;;chr1:212782094..212782109,+!p1@ATF3!1.73!1362.39!ATF3;;chr1:161736038..161736056,+!p4@ATF6!1.73!119.18!ATF6;;chr3:150126101..150126118,+!p6@TSC22D2!1.72!82.61!TSC22D2;;chr1:25256756..25256774,-!p1@RUNX3!1.70!89.38!RUNX3;;chr12:72056773..72056796,+!p3@THAP2!1.70!63.65!THAP2;;chr2:145271342..145271377,-!p5@ZEB2!1.70!48.75!ZEB2;;chr9:102584128..102584144,+!p3@NR4A3!1.69!89.38!NR4A3;;chr4:106066712..106066728,+!p8@TET2!1.66!44.69!TET2;;chr12:54778351..54778378,-!p6@ZNF385A!1.66!44.69!ZNF385A;;chr2:68615063..68615089,+!p4@PLEK!1.65!43.34!PLEK;;chr12:72056749..72056767,+!p6@THAP2!1.64!47.40!THAP2;;chr10:31288370..31288393,-!p3@ZNF438!1.63!41.98!ZNF438;;chr8:53373491..53373506,-!p4@ST18!1.63!41.98!ST18;;chr18:77155922..77155939,+!p1@NFATC1!1.62!108.34!NFATC1;;chr14:35872962..35873025,-!p3@NFKBIA!1.62!100.22!NFKBIA;;chr19:54058073..54058088,+!p1@ZNF331!1.61!39.27!ZNF331;;chr2:145277640..145277771,-!p1@ZEB2!1.60!491.60!ZEB2;;chr21:40177845..40177863,+!p1@ETS2!1.59!2104.53!ETS2;;chr19:54041669..54041697,+!p2@ZNF331!1.59!37.92!ZNF331;;chr21:30671235..30671253,+!p1@BACH1!1.58!444.20!BACH1;;chr3:39195037..39195069,-!p2@CSRNP1!1.58!219.39!CSRNP1;;chr7:106809470..106809481,+!p2@HBP1!1.58!51.46!HBP1;;chr10:35484090..35484104,+!p6@CREM!1.57!36.57!CREM;;chr17:38497662..38497713,+!p4@RARA!1.56!40.63!RARA;;chr4:106068026..106068084,+!p1@TET2!1.54!289.81!TET2;;chr10:104154246..104154347,+!p3@NFKB2!1.54!196.37!NFKB2;;chr6:12012249..12012266,+!p5@HIVEP1!1.54!56.88!HIVEP1;;chr5:142782823..142782854,-!p3@NR3C1!1.54!47.40!NR3C1;;chr8:81397820..81397836,+!p2@ZBTB10!1.54!41.98!ZBTB10;;chr4:106066776..106066791,+!p9@TET2!1.54!33.86!TET2;;chr9:110252035..110252057,-!p1@KLF4!1.53!502.43!KLF4;;chr10:51572339..51572376,+!p4@NCOA4!1.53!71.78!NCOA4;;chr3:12330560..12330579,+!p1@PPARG!1.53!37.92!PPARG;;chr19:36389729..36389751,-!p3@NFKBID!1.53!32.50!NFKBID;;chr2:28615716..28615733,+!p1@FOSL2!1.52!1427.40!FOSL2;;chr21:30671690..30671762,+!p2@BACH1!1.50!100.22!BACH1;;chr9:129567282..129567353,+!p1@ZBTB43!1.49!371.07!ZBTB43;;chr2:61108808..61108821,+!p3@REL!1.49!37.92!REL;;chr2:68615031..68615055,+!p3@PLEK!1.49!29.79!PLEK;;chr4:103423079..103423112,+!p4@NFKB1!1.49!29.79!NFKB1;;chr6:391743..391759,+!p1@IRF4!1.49!29.79!IRF4;;chr19:36389839..36389857,-!p4@NFKBID!1.49!29.79!NFKBID;;chr6:12012170..12012245,+!p1@HIVEP1!1.48!140.84!HIVEP1;;chr4:83821967..83821998,+!p3@THAP9!1.48!35.21!THAP9;;chr4:106066730..106066754,+!p6@TET2!1.47!28.44!TET2;;chr9:102584278..102584285,+!p5@NR4A3!1.47!28.44!NR4A3;;chr14:75745523..75745537,+!p1@FOS!1.46!3158.15!FOS;;chr6:15246200..15246214,+!p2@JARID2!1.46!74.48!JARID2;;chr2:28618532..28618610,+!p4@FOSL2!1.46!47.40!FOSL2;;chr17:40440225..40440268,+!p3@STAT5A!1.46!35.21!STAT5A;;chr6:144385698..144385742,-!p2@PLAGL1!1.46!33.86!PLAGL1;;chr13:41593425..41593480,-!p1@ELF1!1.45!165.22!ELF1;;chr21:30673091..30673135,+!p7@BACH1!1.45!27.09!BACH1;;chr3:12329397..12329433,+!p2@PPARG!1.44!59.59!PPARG;;chrX:129244454..129244488,-!p1@ELF4!1.43!180.12!ELF4;;chr3:39195139..39195150,-!p3@CSRNP1!1.43!32.50!CSRNP1;;chr7:50344289..50344323,+!p1@IKZF1!1.43!25.73!IKZF1;;chr14:35872926..35872951,-!p4@NFKBIA!1.42!35.21!NFKBIA;;chr1:157108130..157108173,-!p1@ETV3!1.41!171.99!ETV3;;chr1:38325227..38325246,-!p2@MTF1!1.41!33.86!MTF1;;chr6:44233252..44233296,-!p1@NFKBIE!1.40!228.87!NFKBIE;;chr18:3448455..3448480,+!p5@TGIF1!1.40!43.34!TGIF1;;chr9:102584241..102584261,+!p4@NR4A3!1.40!36.57!NR4A3;;chr17:38497715..38497734,+!p8@RARA!1.40!24.38!RARA;;chr11:47400045..47400060,-!p6@SPI1!1.40!24.38!SPI1;;chr10:3827371..3827386,-!p2@KLF6!1.39!189.60!KLF6;;chr8:81397846..81397860,+!p3@ZBTB10!1.38!28.44!ZBTB10;;chr2:157189617..157189667,-!p4@NR4A2!1.38!23.02!NR4A2;;chr2:231090471..231090504,+!p2@SP140!1.38!23.02!SP140;;chr2:238600998..238601013,+!p5@LRRFIP1!1.38!23.02!LRRFIP1;;chr2:97202480..97202499,+!p1@ARID5A!1.37!222.10!ARID5A;;chr11:65430554..65430579,-!p3@RELA!1.37!56.88!RELA;;chr13:41635029..41635044,-!p4@ELF1!1.36!46.05!ELF1;;chr12:48298765..48298783,-!p2@VDR!1.36!44.69!VDR;;chr19:50432132..50432217,+!p2@ATF5!1.36!25.73!ATF5;;chr19:47616992..47617011,-!p4@ZC3H4!1.35!44.69!ZC3H4;;chr10:104155455..104155479,+!p1@NFKB2!1.33!288.46!NFKB2;;chr1:158985493..158985535,+!p4@IFI16!1.33!31.15!IFI16;;chr21:34398234..34398250,+!p1@OLIG2!1.33!20.31!OLIG2;;chr2:68615096..68615115,+!p5@PLEK!1.33!20.31!PLEK;;chrX:153305962..153305995,-!p5@MECP2!1.33!20.31!MECP2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.33!20.31!ZBED1;;chr12:11802753..11802834,+!p2@ETV6!1.32!94.80!ETV6;;chr3:5021026..5021035,+!p5@BHLHE40!1.32!24.38!BHLHE40;;chr1:935467..935484,-!p1@HES4!1.31!83.96!HES4;;chr2:61108771..61108789,+!p4@REL!1.30!28.44!REL;;chr4:83822246..83822277,+!p5@THAP9!1.30!18.96!THAP9;;chr1:40367668..40367684,-!p2@MYCL1!1.30!18.96!MYCL1;;chr21:30672433..30672464,+!p6@BACH1!1.30!18.96!BACH1;;chr11:47399920..47399931,-!p7@SPI1!1.30!18.96!SPI1;;chr20:48807351..48807384,+!p1@CEBPB!1.29!1810.65!CEBPB;;chr3:193853927..193853944,+!p1@HES1!1.29!585.04!HES1;;chr6:12011943..12012015,+!p2@HIVEP1!1.29!58.23!HIVEP1;;chr18:3449330..3449344,+!p10@TGIF1!1.29!24.38!TGIF1;;chr19:45252008..45252024,+!p2@BCL3!1.28!58.23!BCL3;;chr11:615942..615957,-!p1@IRF7!1.27!163.87!IRF7;;chr21:40177892..40177903,+!p2@ETS2!1.27!69.07!ETS2;;chr3:5020939..5020952,+!p2@BHLHE40!1.27!54.17!BHLHE40;;chr4:103446513..103446530,+!p19@NFKB1!1.27!17.61!NFKB1;;chr6:106535598..106535637,+!p7@PRDM1!1.27!17.61!PRDM1;;chr8:53373515..53373526,-!p8@ST18!1.27!17.61!ST18;;chr18:3449527..3449582,+!p6@TGIF1!1.26!32.50!TGIF1;;chr19:19496539..19496576,+!p8@GATAD2A!1.26!29.79!GATAD2A;;chr8:81397876..81397898,+!p5@ZBTB10!1.26!20.31!ZBTB10;;chr3:39195075..39195088,-!p1@CSRNP1!1.25!104.28!CSRNP1;;chr18:3449720..3449749,+!p2@TGIF1!1.25!35.21!TGIF1;;chr7:17338266..17338282,+!p1@AHR!1.24!173.35!AHR;;chr2:208394817..208394834,+!p3@CREB1!1.24!65.00!CREB1;;chr2:70314240..70314256,+!p4@PCBP1!1.24!33.86!PCBP1;;chr17:79885537..79885554,-!p2@MAFG!1.24!31.15!MAFG;;chrX:129244430..129244442,-!p5@ELF4!1.24!16.25!ELF4;;chr13:41593392..41593403,-!p7@ELF1!1.24!16.25!ELF1;;chr4:103446567..103446592,+!p15@NFKB1!1.24!16.25!NFKB1;;chr4:83822294..83822306,+!p8@THAP9!1.24!16.25!THAP9;;chr2:8822176..8822196,+!p1@ID2!1.23!2172.24!ID2;;chr5:88178983..88179012,-!p1@MEF2C!1.23!120.53!MEF2C;;chr2:73520667..73520683,-!p1@EGR4!1.20!14.90!EGR4;;chr4:103423120..103423142,+!p8@NFKB1!1.20!14.90!NFKB1;;chr17:40429090..40429125,-!p3@STAT5B!1.20!14.90!STAT5B;;chr10:31288329..31288353,-!p7@ZNF438!1.20!14.90!ZNF438;;chr12:72056706..72056717,+!p10@THAP2!1.20!14.90!THAP2;;chr14:35872542..35872553,-!p10@NFKBIA!1.20!14.90!NFKBIA;;chr19:45971060..45971122,+!p3@FOSB!1.20!14.90!FOSB;;chr21:36421535..36421610,-!p2@RUNX1!1.19!51.46!RUNX1;;chr18:3449586..3449617,+!p8@TGIF1!1.19!23.02!TGIF1;;chr3:170075436..170075520,+!p1@SKIL!1.18!302.00!SKIL;;chr21:36260295..36260310,-!p3@RUNX1!1.18!23.02!RUNX1;;chr12:96588368..96588394,+!p3@ELK3!1.17!36.57!ELK3;;chr2:157199008..157199023,-!p3@NR4A2!1.16!28.44!NR4A2;;chr14:35872414..35872425,-!p7@NFKBIA!1.16!14.90!NFKBIA;;chr17:40440359..40440386,+!p4@STAT5A!1.16!13.54!STAT5A;;chr8:22550530..22550609,-!p2@EGR3!1.16!13.54!EGR3;;chr7:6676986..6677005,+!p2@ENST00000427912!1.15!35.21!ZNF316;;chr8:80679993..80680011,-!p1@HEY1!1.15!18.96!HEY1;;chrX:24167800..24167811,+!p3@ZFX!1.15!16.25!ZFX;;chr12:54785054..54785072,-!p4@ZNF385A!1.15!14.90!ZNF385A;;chr19:33793430..33793447,-!p1@CEBPA!1.14!54.17!CEBPA;;chr17:7388010..7388017,-!p5@ZBTB4!1.14!21.67!ZBTB4;;chr19:13213662..13213686,-!p1@LYL1!1.14!18.96!LYL1;;chr12:5791428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NFX1!0.63!12.19!ZNFX1;;chr21:44394742..44394756,+!p2@PKNOX1!0.63!8.13!PKNOX1;;chr5:137800878..137800898,+!p6@EGR1!0.63!4.06!EGR1;;chr6:45390599..45390662,+!p11@RUNX2!0.63!4.06!RUNX2;;chr10:3818891..3818895,-!p6@KLF6!0.63!4.06!KLF6;;chr6:35310312..35310359,+!p1@PPARD!0.62!33.86!PPARD;;chr19:21950362..21950388,-!p1@ZNF100!0.62!33.86!ZNF100;;chr5:142784003..142784065,-!p2@NR3C1!0.62!31.15!NR3C1;;chr7:44925044..44925156,-!p1@PURB!0.62!29.79!PURB;;chr5:172483347..172483407,+!p1@C5orf41!0.62!28.44!CREBRF;;chr9:4300050..4300118,-!p1@GLIS3!0.62!24.38!GLIS3;;chr19:12175535..12175554,+!p1@ZNF844!0.62!20.31!ZNF844;;chr6:41040923..41040952,+!p2@NFYA!0.62!9.48!NFYA;;chr5:88179230..88179270,-!p4@MEF2C!0.62!6.77!MEF2C;;chr2:208030886..208030917,-!p4@KLF7!0.62!6.77!KLF7;;chr14:74353454..74353469,+!p4@ZNF410!0.62!6.77!ZNF410;;chr22:38598042..38598052,+!p4@MAFF!0.62!5.42!MAFF;;chr15:31619407..31619419,+!p9@KLF13!0.62!4.06!KLF13;;chr1:6684918..6684936,+!p2@THAP3!0.62!4.06!THAP3;;chr22:29196511..29196541,-!p1@XBP1!0.61!417.11!XBP1;;chr2:208031542..208031595,-!p2@KLF7!0.61!25.73!KLF7;;chr3:23986824..23986848,+!p2@NR1D2!0.61!20.31!NR1D2;;chr19:58694421..58694485,+!p1@ZNF274!0.61!18.96!ZNF274;;chr19:19496577..19496619,+!p5@GATAD2A!0.61!12.19!GATAD2A;;chr9:128509663..128509715,+!p1@PBX3!0.61!12.19!PBX3;;chr19:21203481..21203504,+!p2@ZNF430!0.61!8.13!ZNF430;;chr16:69600209..69600234,+!p4@NFAT5!0.61!4.06!NFAT5;;chr20:30795511..30795562,-!p1@PLAGL2!0.60!65.00!PLAGL2;;chr2:174828545..174828644,-!p1@SP3!0.60!55.52!SP3;;chr7:77428066..77428132,+!p2@PHTF2!0.60!23.02!PHTF2;;chr6:20403727..20403769,+!p4@E2F3!0.60!8.13!E2F3;;chr3:71630690..71630750,-!p11@FOXP1!0.60!5.42!FOXP1;;chr1:8484007..8484061,-!p13@RERE!0.60!4.06!RERE;;chr19:12163769..12163798,-!p1@ZNF878!0.60!4.06!ZNF878;;chr22:29196547..29196563,-!p2@XBP1!0.59!131.36!XBP1;;chr9:137218281..137218340,+!p1@RXRA!0.59!101.57!RXRA;;chr2:242576431..242576458,-!p3@THAP4!0.59!8.13!THAP4;;chr13:41635104..41635124,-!p6@ELF1!0.59!5.42!ELF1;;chr1:45805788..45805801,+!p6@TOE1!0.59!4.06!TOE1;;chr4:81118647..81118666,+!p1@PRDM8!0.59!4.06!PRDM8;;chr15:100106155..100106243,+!p1@MEF2A!0.58!92.09!MEF2A;;chr4:26322616..26322652,+!p1@RBPJ!0.58!74.48!RBPJ;;chr1:235491462..235491510,-!p1@ARID4B!0.58!62.30!ARID4B;;chr5:142783175..142783297,-!p1@NR3C1!0.58!47.40!NR3C1;;chr19:21203451..21203475,+!p1@ZNF430!0.58!35.21!ZNF430;;chr6:43138999..43139017,+!p2@SRF!0.58!20.31!SRF;;chr18:72922743..72922761,+!p3@TSHZ1!0.58!10.83!TSHZ1;;chr1:40627028..40627037,+!p2@RLF!0.58!4.06!RLF;;chr21:36260463..36260480,-!p9@RUNX1!0.58!4.06!RUNX1;;chr14:21566540..21566580,-!p2@ZNF219!0.58!4.06!ZNF219;;chr2:192015750..192015793,-!p2@STAT4!0.58!4.06!STAT4;;chr3:170075103..170075114,+!p5@SKIL!0.58!4.06!SKIL;;chr8:116681221..116681236,-!p3@TRPS1!0.57!9.48!TRPS1;;chr16:89787937..89787971,+!p1@ZNF276!0.57!8.13!ZNF276;;chrX:129244655..129244697,-!p4@ELF4!0.57!5.42!ELF4;;chr3:101395919..101395930,-!p4@ZBTB11!0.57!4.06!ZBTB11;;chr3:170075124..170075136,+!p4@SKIL!0.57!4.06!SKIL;;chr10:35415951..35415975,+!p8@CREM!0.57!4.06!CREM;;chr12:10865870..10865888,-!p6@CSDA!0.57!4.06!CSDA;;chr10:35416172..35416184,+!p13@CREM!0.57!2.71!CREM;;chr10:3824125..3824146,-!p12@KLF6!0.57!2.71!KLF6;;chr10:3824206..3824226,-!p10@KLF6!0.57!2.71!KLF6;;chr10:3824309..3824321,-!p15@KLF6!0.57!2.71!KLF6;;chr10:38299441..38299450,+!p3@ZNF33A!0.57!2.71!ZNF33A;;chr10:51575814..51575835,+!p8@NCOA4!0.57!2.71!NCOA4;;chr10:60144911..60144939,+!p2@TFAM!0.57!2.71!TFAM;;chr11:34642612..34642646,+!p1@EHF!0.57!2.71!EHF;;chr11:47237987..47237998,+!p5@DDB2!0.57!2.71!DDB2;;chr12:11802957..11802964,+!p8@ETV6!0.57!2.71!ETV6;;chr12:52430849..52430860,+!p23@NR4A1!0.57!2.71!NR4A1;;chr12:52449834..52449859,+!p16@NR4A1!0.57!2.71!NR4A1;;chr12:52450298..52450331,+!p11@NR4A1!0.57!2.71!NR4A1;;chr12:57911081..57911085,-!p2@DDIT3!0.57!2.71!DDIT3;;chr12:57917037..57917052,+!p9@MBD6!0.57!2.71!MBD6;;chr12:72056897..72056908,+!p12@THAP2!0.57!2.71!THAP2;;chr13:41635806..41635828,-!p14@ELF1!0.57!2.71!ELF1;;chr14:62214151..62214164,+!p11@HIF1A!0.57!2.71!HIF1A;;chrX:70712265..70712303,+!p4@TAF1!0.57!2.71!TAF1;;chrX:153305763..153305772,-!p8@MECP2!0.57!2.71!MECP2;;chr19:45974438..45974449,+!p26@FOSB!0.57!2.71!FOSB;;chr19:45977697..45977713,+!p4@FOSB!0.57!2.71!FOSB;;chr19:54041508..54041527,+!p8@ZNF331!0.57!2.71!ZNF331;;chr1:157108728..157108744,-!p5@ETV3!0.57!2.71!ETV3;;chr1:158985536..158985545,+!p18@IFI16!0.57!2.71!IFI16;;chr1:158985553..158985574,+!p14@IFI16!0.57!2.71!IFI16;;chr1:212873061..212873080,-!p4@BATF3!0.57!2.71!BATF3;;chr1:38324636..38324647,-!p3@MTF1!0.57!2.71!MTF1;;chr1:59250262..59250296,-!p5@JUN!0.57!2.71!JUN;;chr1:935277..935309,-!p6@HES4!0.57!2.71!HES4;;chr20:56195525..56195556,-!p2@ZBP1!0.57!2.71!ZBP1;;chr21:30672681..30672700,+!p19@BACH1!0.57!2.71!BACH1;;chr21:36421147..36421193,-!p10@RUNX1!0.57!2.71!RUNX1;;chr5:142780189..142780223,-!p6@NR3C1!0.57!2.71!NR3C1;;chr5:172483414..172483425,+!p3@C5orf41!0.57!2.71!CREBRF;;chr5:71803177..71803255,-!p1@ZNF366!0.57!2.71!ZNF366;;chr5:88120151..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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 37: | Line 42: | ||
|fonse_treatment_closure=FF:0000625,FF:0000635,FF:0011104,FF:11888-125D7 | |fonse_treatment_closure=FF:0000625,FF:0000635,FF:0011104,FF:11888-125D7 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor3.CNhs13494.11888-125D7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor3.CNhs13494.11888-125D7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor3.CNhs13494.11888-125D7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor3.CNhs13494.11888-125D7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor3.CNhs13494.11888-125D7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11888-125D7 | |id=FF:11888-125D7 | ||
|is_a=EFO:0002091;;FF:0011104 | |is_a=EFO:0002091;;FF:0011104 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13494 | |||
|library_id_phase_based=2:CNhs13494 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11888 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11888 | |||
|name=CD14+ monocytes - treated with Candida, donor3 | |name=CD14+ monocytes - treated with Candida, donor3 | ||
|namespace= | |namespace= | ||
Line 45: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13494,LSID1025,release012,COMPLETED | |profile_hcage=CNhs13494,LSID1025,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=125 | |rna_box=125 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 60: | Line 79: | ||
|rna_weight_ug=2.996145 | |rna_weight_ug=2.996145 | ||
|sample_age=21 | |sample_age=21 | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 81: | Line 101: | ||
|top_motifs=FOSL2:6.31595718448;FOS_FOS{B,L1}_JUN{B,D}:6.10896247772;BACH2:6.02318977113;NFE2:5.84492777892;HLF:5.5643963794;PAX2:5.07098160214;CEBPA,B_DDIT3:5.0639503644;NFE2L2:4.99194024856;NFIL3:4.82082326154;SREBF1,2:4.47961455422;NFKB1_REL_RELA:4.34629019534;ATF5_CREB3:3.98839479668;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:3.98000834337;HSF1,2:3.87304105524;FOXP3:3.60261272661;SPIB:3.50383265647;PAX8:3.20271837191;SPI1:3.17643291111;ATF4:3.1599927733;NFATC1..3:3.14325204867;CREB1:3.11632015755;NFE2L1:3.06388707367;ETS1,2:3.05167478079;ATF6:3.01120285195;JUN:2.91891158184;MAFB:2.81003731835;NANOG{mouse}:2.78669578736;NR1H4:2.66574664576;ATF2:2.53980494107;DMAP1_NCOR{1,2}_SMARC:2.50306136546;PAX3,7:2.43808647378;FOXN1:2.37144471687;RUNX1..3:2.35248848376;IRF1,2:2.18195416738;HOX{A5,B5}:2.17282933242;IRF7:2.12514745127;XBP1:2.06668022439;CDX1,2,4:1.796101295;TGIF1:1.69800023826;HIF1A:1.6396329802;STAT5{A,B}:1.61006715004;STAT2,4,6:1.54539589358;PAX1,9:1.54213076186;PDX1:1.41465549216;IKZF1:1.34330332964;RXRA_VDR{dimer}:1.29604164629;FOXO1,3,4:1.1169269881;VSX1,2:1.089433602;EP300:1.02301435098;HMX1:0.933996693609;POU2F1..3:0.898099272995;PPARG:0.837997297582;ELF1,2,4:0.828232816326;HMGA1,2:0.81527397801;HOXA9_MEIS1:0.773972388201;TBP:0.692620161331;PAX4:0.669854193181;ALX4:0.608221608174;MEF2{A,B,C,D}:0.597965838242;SRF:0.569918588573;RORA:0.506254751614;NANOG:0.29943536579;PRDM1:0.277994709703;HES1:0.208914161045;EN1,2:0.154247923052;NR3C1:0.101694497863;GLI1..3:0.0906466169782;BPTF:0.0709950050323;RBPJ:0.0163415312018;TEF:-0.0436111625207;RFX2..5_RFXANK_RFXAP:-0.163770047795;OCT4_SOX2{dimer}:-0.188709957078;FOX{D1,D2}:-0.316897919375;ESR1:-0.361255954047;AHR_ARNT_ARNT2:-0.414220969339;ZBTB16:-0.419946215024;EGR1..3:-0.484531234028;FOXM1:-0.504926992457;NFIX:-0.530403951414;POU3F1..4:-0.535876691423;IKZF2:-0.544553769995;FOXL1:-0.580820189484;HBP1_HMGB_SSRP1_UBTF:-0.624380149841;NKX2-1,4:-0.637642202332;ESRRA:-0.658740239566;GATA4:-0.746084893097;SOX2:-0.787801129862;MZF1:-0.796166130061;MYB:-0.804572650117;POU5F1:-0.814618370555;PAX6:-0.825742162684;SMAD1..7,9:-0.844783999934;TFCP2:-0.845186757446;NR6A1:-0.851108901934;STAT1,3:-1.00031255234;NKX3-1:-1.01910645381;CRX:-1.02723623146;ZNF238:-1.03965888295;DBP:-1.04005758047;TLX2:-1.05402893403;SOX5:-1.07309492321;RFX1:-1.1012467592;NHLH1,2:-1.1234644177;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.18995985531;REST:-1.19048405946;TAL1_TCF{3,4,12}:-1.31439260062;POU6F1:-1.33294000779;RXR{A,B,G}:-1.38733621518;PRRX1,2:-1.4003697457;SOX{8,9,10}:-1.41169437802;HNF1A:-1.43195015195;HNF4A_NR2F1,2:-1.4470847299;GATA6:-1.4913451286;BREu{core}:-1.49431336469;FOXP1:-1.49563931291;PITX1..3:-1.52029916712;CDC5L:-1.5555062232;CUX2:-1.5577396842;SPZ1:-1.56888210792;SP1:-1.57184505631;HOX{A4,D4}:-1.62183887162;T:-1.63485126939;ALX1:-1.66863269872;FOX{F1,F2,J1}:-1.67256441686;MYFfamily:-1.68341872493;TFAP4:-1.7077858474;TBX4,5:-1.71013924034;MED-1{core}:-1.72082495324;NKX2-3_NKX2-5:-1.72799293284;E2F1..5:-1.75444122886;MTE{core}:-1.76441518827;ZNF384:-1.77305286554;GZF1:-1.7979842874;GTF2A1,2:-1.84007626909;TP53:-1.84482593004;MYBL2:-1.9070436449;TLX1..3_NFIC{dimer}:-1.92503743008;FOXA2:-1.93476420575;MTF1:-1.96033025348;TEAD1:-1.97753740219;bHLH_family:-1.98571080488;FOXD3:-1.99234581375;ZIC1..3:-2.00122834845;NKX6-1,2:-2.00890262657;GTF2I:-2.0187403621;FOXQ1:-2.02033810836;TFAP2B:-2.0333946368;ZFP161:-2.05205262621;PATZ1:-2.05408228003;ZNF148:-2.06402090333;NFY{A,B,C}:-2.08108235831;EBF1:-2.09461771479;ZEB1:-2.13197377306;MAZ:-2.14305893755;ZBTB6:-2.19730646595;NKX3-2:-2.2175456269;TFDP1:-2.23696472772;PBX1:-2.27126579018;GCM1,2:-2.27314068073;SNAI1..3:-2.32333178827;ONECUT1,2:-2.38319454965;GFI1B:-2.4315709113;MYOD1:-2.48727324344;ELK1,4_GABP{A,B1}:-2.52888152204;RREB1:-2.5844436487;ADNP_IRX_SIX_ZHX:-2.59043954251;NR5A1,2:-2.60622630074;HIC1:-2.66146620184;HOX{A6,A7,B6,B7}:-2.6949754992;SOX17:-2.69682742951;TFAP2{A,C}:-2.74669302204;FOX{I1,J2}:-2.81683525814;XCPE1{core}:-2.82033421734;KLF4:-2.88974239216;POU1F1:-2.91413130715;UFEwm:-2.91463384516;AR:-2.99687018771;ARID5B:-3.07264647983;GFI1:-3.12208725994;EVI1:-3.22038110747;LHX3,4:-3.36534494169;LMO2:-3.37149077251;NRF1:-3.40509264099;PAX5:-3.43869022604;AIRE:-3.51334900148;NKX2-2,8:-3.65237039104;ZNF423:-3.71325992846;YY1:-3.77665050414;LEF1_TCF7_TCF7L1,2:-3.80208064774;ZNF143:-4.21016600477;HAND1,2:-4.3148032899;TOPORS:-4.87485565461 | |top_motifs=FOSL2:6.31595718448;FOS_FOS{B,L1}_JUN{B,D}:6.10896247772;BACH2:6.02318977113;NFE2:5.84492777892;HLF:5.5643963794;PAX2:5.07098160214;CEBPA,B_DDIT3:5.0639503644;NFE2L2:4.99194024856;NFIL3:4.82082326154;SREBF1,2:4.47961455422;NFKB1_REL_RELA:4.34629019534;ATF5_CREB3:3.98839479668;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:3.98000834337;HSF1,2:3.87304105524;FOXP3:3.60261272661;SPIB:3.50383265647;PAX8:3.20271837191;SPI1:3.17643291111;ATF4:3.1599927733;NFATC1..3:3.14325204867;CREB1:3.11632015755;NFE2L1:3.06388707367;ETS1,2:3.05167478079;ATF6:3.01120285195;JUN:2.91891158184;MAFB:2.81003731835;NANOG{mouse}:2.78669578736;NR1H4:2.66574664576;ATF2:2.53980494107;DMAP1_NCOR{1,2}_SMARC:2.50306136546;PAX3,7:2.43808647378;FOXN1:2.37144471687;RUNX1..3:2.35248848376;IRF1,2:2.18195416738;HOX{A5,B5}:2.17282933242;IRF7:2.12514745127;XBP1:2.06668022439;CDX1,2,4:1.796101295;TGIF1:1.69800023826;HIF1A:1.6396329802;STAT5{A,B}:1.61006715004;STAT2,4,6:1.54539589358;PAX1,9:1.54213076186;PDX1:1.41465549216;IKZF1:1.34330332964;RXRA_VDR{dimer}:1.29604164629;FOXO1,3,4:1.1169269881;VSX1,2:1.089433602;EP300:1.02301435098;HMX1:0.933996693609;POU2F1..3:0.898099272995;PPARG:0.837997297582;ELF1,2,4:0.828232816326;HMGA1,2:0.81527397801;HOXA9_MEIS1:0.773972388201;TBP:0.692620161331;PAX4:0.669854193181;ALX4:0.608221608174;MEF2{A,B,C,D}:0.597965838242;SRF:0.569918588573;RORA:0.506254751614;NANOG:0.29943536579;PRDM1:0.277994709703;HES1:0.208914161045;EN1,2:0.154247923052;NR3C1:0.101694497863;GLI1..3:0.0906466169782;BPTF:0.0709950050323;RBPJ:0.0163415312018;TEF:-0.0436111625207;RFX2..5_RFXANK_RFXAP:-0.163770047795;OCT4_SOX2{dimer}:-0.188709957078;FOX{D1,D2}:-0.316897919375;ESR1:-0.361255954047;AHR_ARNT_ARNT2:-0.414220969339;ZBTB16:-0.419946215024;EGR1..3:-0.484531234028;FOXM1:-0.504926992457;NFIX:-0.530403951414;POU3F1..4:-0.535876691423;IKZF2:-0.544553769995;FOXL1:-0.580820189484;HBP1_HMGB_SSRP1_UBTF:-0.624380149841;NKX2-1,4:-0.637642202332;ESRRA:-0.658740239566;GATA4:-0.746084893097;SOX2:-0.787801129862;MZF1:-0.796166130061;MYB:-0.804572650117;POU5F1:-0.814618370555;PAX6:-0.825742162684;SMAD1..7,9:-0.844783999934;TFCP2:-0.845186757446;NR6A1:-0.851108901934;STAT1,3:-1.00031255234;NKX3-1:-1.01910645381;CRX:-1.02723623146;ZNF238:-1.03965888295;DBP:-1.04005758047;TLX2:-1.05402893403;SOX5:-1.07309492321;RFX1:-1.1012467592;NHLH1,2:-1.1234644177;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.18995985531;REST:-1.19048405946;TAL1_TCF{3,4,12}:-1.31439260062;POU6F1:-1.33294000779;RXR{A,B,G}:-1.38733621518;PRRX1,2:-1.4003697457;SOX{8,9,10}:-1.41169437802;HNF1A:-1.43195015195;HNF4A_NR2F1,2:-1.4470847299;GATA6:-1.4913451286;BREu{core}:-1.49431336469;FOXP1:-1.49563931291;PITX1..3:-1.52029916712;CDC5L:-1.5555062232;CUX2:-1.5577396842;SPZ1:-1.56888210792;SP1:-1.57184505631;HOX{A4,D4}:-1.62183887162;T:-1.63485126939;ALX1:-1.66863269872;FOX{F1,F2,J1}:-1.67256441686;MYFfamily:-1.68341872493;TFAP4:-1.7077858474;TBX4,5:-1.71013924034;MED-1{core}:-1.72082495324;NKX2-3_NKX2-5:-1.72799293284;E2F1..5:-1.75444122886;MTE{core}:-1.76441518827;ZNF384:-1.77305286554;GZF1:-1.7979842874;GTF2A1,2:-1.84007626909;TP53:-1.84482593004;MYBL2:-1.9070436449;TLX1..3_NFIC{dimer}:-1.92503743008;FOXA2:-1.93476420575;MTF1:-1.96033025348;TEAD1:-1.97753740219;bHLH_family:-1.98571080488;FOXD3:-1.99234581375;ZIC1..3:-2.00122834845;NKX6-1,2:-2.00890262657;GTF2I:-2.0187403621;FOXQ1:-2.02033810836;TFAP2B:-2.0333946368;ZFP161:-2.05205262621;PATZ1:-2.05408228003;ZNF148:-2.06402090333;NFY{A,B,C}:-2.08108235831;EBF1:-2.09461771479;ZEB1:-2.13197377306;MAZ:-2.14305893755;ZBTB6:-2.19730646595;NKX3-2:-2.2175456269;TFDP1:-2.23696472772;PBX1:-2.27126579018;GCM1,2:-2.27314068073;SNAI1..3:-2.32333178827;ONECUT1,2:-2.38319454965;GFI1B:-2.4315709113;MYOD1:-2.48727324344;ELK1,4_GABP{A,B1}:-2.52888152204;RREB1:-2.5844436487;ADNP_IRX_SIX_ZHX:-2.59043954251;NR5A1,2:-2.60622630074;HIC1:-2.66146620184;HOX{A6,A7,B6,B7}:-2.6949754992;SOX17:-2.69682742951;TFAP2{A,C}:-2.74669302204;FOX{I1,J2}:-2.81683525814;XCPE1{core}:-2.82033421734;KLF4:-2.88974239216;POU1F1:-2.91413130715;UFEwm:-2.91463384516;AR:-2.99687018771;ARID5B:-3.07264647983;GFI1:-3.12208725994;EVI1:-3.22038110747;LHX3,4:-3.36534494169;LMO2:-3.37149077251;NRF1:-3.40509264099;PAX5:-3.43869022604;AIRE:-3.51334900148;NKX2-2,8:-3.65237039104;ZNF423:-3.71325992846;YY1:-3.77665050414;LEF1_TCF7_TCF7L1,2:-3.80208064774;ZNF143:-4.21016600477;HAND1,2:-4.3148032899;TOPORS:-4.87485565461 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11888-125D7;search_select_hide=table117:FF:11888-125D7 | |||
}} | }} |
Latest revision as of 18:26, 4 June 2020
Name: | CD14+ monocytes - treated with Candida, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13494 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13494
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13494
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.117 |
10 | 10 | 0.0241 |
100 | 100 | 0.915 |
101 | 101 | 0.773 |
102 | 102 | 0.971 |
103 | 103 | 0.29 |
104 | 104 | 0.484 |
105 | 105 | 0.0736 |
106 | 106 | 0.00117 |
107 | 107 | 0.28 |
108 | 108 | 0.804 |
109 | 109 | 0.37 |
11 | 11 | 0.214 |
110 | 110 | 0.16 |
111 | 111 | 0.106 |
112 | 112 | 0.38 |
113 | 113 | 0.543 |
114 | 114 | 0.0417 |
115 | 115 | 0.256 |
116 | 116 | 0.959 |
117 | 117 | 0.0735 |
118 | 118 | 0.182 |
119 | 119 | 0.133 |
12 | 12 | 0.284 |
120 | 120 | 0.655 |
121 | 121 | 0.573 |
122 | 122 | 0.509 |
123 | 123 | 0.597 |
124 | 124 | 0.671 |
125 | 125 | 0.411 |
126 | 126 | 0.184 |
127 | 127 | 0.52 |
128 | 128 | 0.045 |
129 | 129 | 0.403 |
13 | 13 | 0.0779 |
130 | 130 | 0.334 |
131 | 131 | 0.951 |
132 | 132 | 0.0442 |
133 | 133 | 0.661 |
134 | 134 | 0.69 |
135 | 135 | 0.96 |
136 | 136 | 0.998 |
137 | 137 | 0.04 |
138 | 138 | 0.387 |
139 | 139 | 0.0581 |
14 | 14 | 0.557 |
140 | 140 | 0.309 |
141 | 141 | 0.328 |
142 | 142 | 0.0247 |
143 | 143 | 0.0243 |
144 | 144 | 0.74 |
145 | 145 | 0.399 |
146 | 146 | 0.876 |
147 | 147 | 0.87 |
148 | 148 | 0.0189 |
149 | 149 | 0.952 |
15 | 15 | 0.183 |
150 | 150 | 0.359 |
151 | 151 | 0.46 |
152 | 152 | 0.398 |
153 | 153 | 0.623 |
154 | 154 | 0.786 |
155 | 155 | 0.893 |
156 | 156 | 0.527 |
157 | 157 | 0.423 |
158 | 158 | 0.0191 |
159 | 159 | 0.191 |
16 | 16 | 0.323 |
160 | 160 | 0.353 |
161 | 161 | 0.488 |
162 | 162 | 0.313 |
163 | 163 | 0.123 |
164 | 164 | 0.137 |
165 | 165 | 0.401 |
166 | 166 | 0.676 |
167 | 167 | 0.197 |
168 | 168 | 0.271 |
169 | 169 | 0.0163 |
17 | 17 | 0.263 |
18 | 18 | 0.118 |
19 | 19 | 0.536 |
2 | 2 | 0.467 |
20 | 20 | 0.211 |
21 | 21 | 0.775 |
22 | 22 | 0.361 |
23 | 23 | 0.0433 |
24 | 24 | 0.435 |
25 | 25 | 0.42 |
26 | 26 | 0.0969 |
27 | 27 | 0.511 |
28 | 28 | 0.42 |
29 | 29 | 0.277 |
3 | 3 | 0.18 |
30 | 30 | 0.545 |
31 | 31 | 0.765 |
32 | 32 | 0.533 |
33 | 33 | 0.222 |
34 | 34 | 0.807 |
35 | 35 | 0.109 |
36 | 36 | 0.0716 |
37 | 37 | 0.0654 |
38 | 38 | 0.346 |
39 | 39 | 0.82 |
4 | 4 | 0.826 |
40 | 40 | 0.16 |
41 | 41 | 0.00995 |
42 | 42 | 0.422 |
43 | 43 | 0.0219 |
44 | 44 | 0.556 |
45 | 45 | 0.807 |
46 | 46 | 0.232 |
47 | 47 | 0.705 |
48 | 48 | 0.599 |
49 | 49 | 0.12 |
5 | 5 | 0.31 |
50 | 50 | 0.968 |
51 | 51 | 0.555 |
52 | 52 | 0.48 |
53 | 53 | 0.665 |
54 | 54 | 0.468 |
55 | 55 | 0.742 |
56 | 56 | 0.704 |
57 | 57 | 0.925 |
58 | 58 | 0.183 |
59 | 59 | 0.245 |
6 | 6 | 0.869 |
60 | 60 | 0.0697 |
61 | 61 | 0.773 |
62 | 62 | 0.101 |
63 | 63 | 0.574 |
64 | 64 | 0.414 |
65 | 65 | 0.218 |
66 | 66 | 0.416 |
67 | 67 | 0.52 |
68 | 68 | 0.663 |
69 | 69 | 0.405 |
7 | 7 | 0.197 |
70 | 70 | 0.0888 |
71 | 71 | 0.0305 |
72 | 72 | 0.227 |
73 | 73 | 0.198 |
74 | 74 | 0.124 |
75 | 75 | 0.122 |
76 | 76 | 0.168 |
77 | 77 | 0.497 |
78 | 78 | 0.12 |
79 | 79 | 0.486 |
8 | 8 | 0.375 |
80 | 80 | 0.186 |
81 | 81 | 0.351 |
82 | 82 | 0.357 |
83 | 83 | 0.00334 |
84 | 84 | 0.134 |
85 | 85 | 0.0519 |
86 | 86 | 0.0558 |
87 | 87 | 0.535 |
88 | 88 | 0.81 |
89 | 89 | 0.274 |
9 | 9 | 0.455 |
90 | 90 | 0.136 |
91 | 91 | 0.306 |
92 | 92 | 0.414 |
93 | 93 | 0.429 |
94 | 94 | 0.101 |
95 | 95 | 0.466 |
96 | 96 | 0.385 |
97 | 97 | 0.52 |
98 | 98 | 0.14 |
99 | 99 | 0.0506 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13494
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011104 human CD14-positive monocytes - treated with Candida sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000635 (Candida treatment sample)
0011104 (human CD14-positive monocytes - treated with Candida sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)