FF:11910-125G2: Difference between revisions

Latest revision as of 18:28, 4 June 2020

Name:	CD14+CD16- Monocytes, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13540
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	23
cell type	monocyte
cell line	NA
company	NA
collaboration	Michael Rehli (University of Regensberg)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	41-42
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004844

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13540		CAGE		DRX008167		DRR009039

Accession ID Hg19

Library id		BAM		CTSS
CNhs13540		DRZ000464		DRZ001849

Accession ID Hg38

Library id		BAM		CTSS
CNhs13540		DRZ011814		DRZ013199

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.138
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.121
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.347
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0647
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0647
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.121
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.451
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.145
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.121
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.0647
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.426
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.394
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.00244
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.416
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.121
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.216
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.00341
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.121
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0427
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.766
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.938
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.553
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.359
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.685
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.293
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.216
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.406
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.389
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.359
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.684
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.254
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.359
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	1.077
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0685
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.293
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.8
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.467
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.442
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.0647
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.0647
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.171
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.216
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.256
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13540

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.65604e-8
MA0003.1	MA0003.1	0.201
MA0004.1	MA0004.1	0.997
MA0006.1	MA0006.1	0.997
MA0007.1	MA0007.1	0.857
MA0009.1	MA0009.1	0.074
MA0014.1	MA0014.1	0.699
MA0017.1	MA0017.1	0.00821
MA0018.2	MA0018.2	0.198
MA0019.1	MA0019.1	0.303
MA0024.1	MA0024.1	0.00504
MA0025.1	MA0025.1	6.53234e-4
MA0027.1	MA0027.1	0.959
MA0028.1	MA0028.1	0.98
MA0029.1	MA0029.1	0.234
MA0030.1	MA0030.1	0.368
MA0031.1	MA0031.1	0.546
MA0035.2	MA0035.2	0.42
MA0038.1	MA0038.1	0.153
MA0039.2	MA0039.2	0.977
MA0040.1	MA0040.1	0.34
MA0041.1	MA0041.1	0.847
MA0042.1	MA0042.1	0.179
MA0043.1	MA0043.1	2.76873e-6
MA0046.1	MA0046.1	0.178
MA0047.2	MA0047.2	0.101
MA0048.1	MA0048.1	0.924
MA0050.1	MA0050.1	1.98716e-9
MA0051.1	MA0051.1	4.36483e-4
MA0052.1	MA0052.1	0.436
MA0055.1	MA0055.1	0.336
MA0057.1	MA0057.1	0.633
MA0058.1	MA0058.1	0.795
MA0059.1	MA0059.1	0.708
MA0060.1	MA0060.1	9.81736e-9
MA0061.1	MA0061.1	7.74115e-6
MA0062.2	MA0062.2	0.00257
MA0065.2	MA0065.2	0.03
MA0066.1	MA0066.1	0.0762
MA0067.1	MA0067.1	0.00128
MA0068.1	MA0068.1	0.122
MA0069.1	MA0069.1	0.747
MA0070.1	MA0070.1	0.00712
MA0071.1	MA0071.1	0.275
MA0072.1	MA0072.1	0.99
MA0073.1	MA0073.1	0.653
MA0074.1	MA0074.1	0.637
MA0076.1	MA0076.1	0.929
MA0077.1	MA0077.1	0.0986
MA0078.1	MA0078.1	0.831
MA0079.2	MA0079.2	0.446
MA0080.2	MA0080.2	2.34591e-16
MA0081.1	MA0081.1	6.68483e-5
MA0083.1	MA0083.1	0.31
MA0084.1	MA0084.1	0.523
MA0087.1	MA0087.1	0.651
MA0088.1	MA0088.1	0.817
MA0090.1	MA0090.1	0.0488
MA0091.1	MA0091.1	0.453
MA0092.1	MA0092.1	0.572
MA0093.1	MA0093.1	0.928
MA0099.2	MA0099.2	2.39783e-7
MA0100.1	MA0100.1	0.86
MA0101.1	MA0101.1	1.16667e-4
MA0102.2	MA0102.2	1.33905e-12
MA0103.1	MA0103.1	0.318
MA0104.2	MA0104.2	0.7
MA0105.1	MA0105.1	4.57724e-9
MA0106.1	MA0106.1	0.282
MA0107.1	MA0107.1	1.29705e-5
MA0108.2	MA0108.2	9.06769e-10
MA0111.1	MA0111.1	0.325
MA0112.2	MA0112.2	4.92136e-4
MA0113.1	MA0113.1	0.981
MA0114.1	MA0114.1	0.153
MA0115.1	MA0115.1	0.884
MA0116.1	MA0116.1	5.3615e-5
MA0117.1	MA0117.1	0.131
MA0119.1	MA0119.1	0.32
MA0122.1	MA0122.1	0.948
MA0124.1	MA0124.1	0.407
MA0125.1	MA0125.1	0.248
MA0131.1	MA0131.1	0.872
MA0135.1	MA0135.1	0.597
MA0136.1	MA0136.1	2.21278e-17
MA0137.2	MA0137.2	0.411
MA0138.2	MA0138.2	0.878
MA0139.1	MA0139.1	0.826
MA0140.1	MA0140.1	0.487
MA0141.1	MA0141.1	0.0771
MA0142.1	MA0142.1	0.188
MA0143.1	MA0143.1	0.433
MA0144.1	MA0144.1	0.19
MA0145.1	MA0145.1	0.191
MA0146.1	MA0146.1	0.103
MA0147.1	MA0147.1	0.793
MA0148.1	MA0148.1	0.509
MA0149.1	MA0149.1	0.153
MA0150.1	MA0150.1	7.71244e-6
MA0152.1	MA0152.1	0.194
MA0153.1	MA0153.1	0.038
MA0154.1	MA0154.1	0.00104
MA0155.1	MA0155.1	0.964
MA0156.1	MA0156.1	2.4453e-11
MA0157.1	MA0157.1	0.239
MA0159.1	MA0159.1	0.0367
MA0160.1	MA0160.1	0.026
MA0162.1	MA0162.1	0.724
MA0163.1	MA0163.1	2.76255e-9
MA0164.1	MA0164.1	0.718
MA0258.1	MA0258.1	0.00648
MA0259.1	MA0259.1	0.633

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13540

Novel motif	Logo	P-value
1	1	0.0945
10	10	0.0106
100	100	0.803
101	101	0.309
102	102	0.74
103	103	0.15
104	104	0.757
105	105	0.29
106	106	0.00698
107	107	0.419
108	108	0.644
109	109	0.163
11	11	0.152
110	110	0.362
111	111	0.0262
112	112	0.345
113	113	0.414
114	114	0.00614
115	115	0.121
116	116	0.979
117	117	0.0321
118	118	0.126
119	119	0.237
12	12	0.414
120	120	0.918
121	121	0.932
122	122	0.779
123	123	0.103
124	124	0.803
125	125	0.232
126	126	0.189
127	127	0.222
128	128	0.0367
129	129	0.655
13	13	0.132
130	130	0.216
131	131	0.803
132	132	0.0381
133	133	0.704
134	134	0.454
135	135	0.0485
136	136	0.876
137	137	4.51574e-5
138	138	0.0729
139	139	0.0449
14	14	0.32
140	140	0.0884
141	141	0.213
142	142	0.77
143	143	0.107
144	144	0.603
145	145	0.694
146	146	0.675
147	147	0.228
148	148	0.0093
149	149	0.61
15	15	0.102
150	150	0.592
151	151	0.366
152	152	0.445
153	153	0.608
154	154	0.527
155	155	0.199
156	156	0.857
157	157	0.548
158	158	0.0182
159	159	0.383
16	16	0.487
160	160	0.616
161	161	0.621
162	162	0.397
163	163	0.683
164	164	0.154
165	165	0.0447
166	166	0.807
167	167	0.174
168	168	0.328
169	169	0.0165
17	17	0.283
18	18	0.15
19	19	0.189
2	2	0.988
20	20	0.774
21	21	0.526
22	22	0.249
23	23	0.1
24	24	0.212
25	25	0.177
26	26	0.0471
27	27	0.448
28	28	0.352
29	29	0.12
3	3	0.092
30	30	0.525
31	31	0.648
32	32	0.603
33	33	0.221
34	34	0.479
35	35	0.116
36	36	0.0649
37	37	0.0967
38	38	0.435
39	39	0.911
4	4	0.947
40	40	0.23
41	41	0.0294
42	42	0.309
43	43	0.0877
44	44	0.927
45	45	0.846
46	46	0.161
47	47	0.453
48	48	0.472
49	49	0.121
5	5	0.1
50	50	0.927
51	51	0.364
52	52	0.309
53	53	0.262
54	54	0.446
55	55	0.391
56	56	0.804
57	57	0.721
58	58	0.0764
59	59	0.155
6	6	0.692
60	60	0.0439
61	61	0.218
62	62	0.0202
63	63	0.583
64	64	0.405
65	65	0.28
66	66	0.212
67	67	0.429
68	68	0.486
69	69	0.82
7	7	0.149
70	70	0.0163
71	71	0.0234
72	72	0.238
73	73	0.23
74	74	0.0208
75	75	0.0946
76	76	0.176
77	77	0.616
78	78	0.166
79	79	0.0273
8	8	0.503
80	80	0.157
81	81	0.253
82	82	0.123
83	83	0.627
84	84	0.998
85	85	0.033
86	86	0.0512
87	87	0.831
88	88	0.475
89	89	0.547
9	9	0.302
90	90	0.0152
91	91	0.268
92	92	0.241
93	93	0.529
94	94	0.0227
95	95	0.345
96	96	0.322
97	97	0.959
98	98	0.162
99	99	0.0155

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13540

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011111 human CD14-positive CD16-negative Monocytes sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011111 (human CD14-positive CD16-negative Monocytes sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00004844
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008167;DRR009039;DRZ000464;DRZ001849;DRZ011814;DRZ013199
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0011111
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!2.82!667.01!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.63!430.10!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.33!214.89!ZNF385A;;chr16:85932760..85932775,+!p1@IRF8!2.30!196.25!IRF8;;chr7:115670804..115670825,-!p1@TFEC!2.12!130.03!TFEC;;chr7:50344289..50344323,+!p1@IKZF1!1.97!92.58!IKZF1;;chr11:47400062..47400077,-!p2@SPI1!1.87!73.13!SPI1;;chr14:75745523..75745537,+!p1@FOS!1.84!7582.23!FOS;;chr12:54694758..54694805,-!p1@NFE2!1.83!79.72!NFE2;;chr2:145277640..145277771,-!p1@ZEB2!1.75!690.64!ZEB2;;chr5:88178983..88179012,-!p1@MEF2C!1.71!365.33!MEF2C;;chr20:39317868..39317884,-!p1@MAFB!1.70!545.50!MAFB;;chr11:47399996..47400014,-!p4@SPI1!1.58!36.65!SPI1;;chr10:51572408..51572454,+!p3@NCOA4!1.53!183.39!NCOA4;;chr6:144385698..144385742,-!p2@PLAGL1!1.53!39.38!PLAGL1;;chr11:47399947..47399961,-!p3@SPI1!1.53!32.95!SPI1;;chr7:28725740..28725778,+!p1@CREB5!1.51!267.29!CREB5;;chr11:47400032..47400043,-!p5@SPI1!1.49!30.22!SPI1;;chr2:68592394..68592405,+!p2@PLEK!1.46!27.81!PLEK;;chr7:28725715..28725727,+!p3@CREB5!1.41!28.93!CREB5;;chr2:157189180..157189290,-!p1@NR4A2!1.40!120.54!NR4A2;;chr11:47400045..47400060,-!p6@SPI1!1.40!24.27!SPI1;;chr19:45971246..45971265,+!p1@FOSB!1.37!403.10!FOSB;;chr4:106068026..106068084,+!p1@TET2!1.36!190.94!TET2;;chr19:42636586..42636607,-!p1@POU2F2!1.36!59.63!POU2F2;;chr21:34442439..34442455,+!p1@OLIG1!1.36!22.02!OLIG1;;chrY:21906594..21906622,-!p1@KDM5D!1.35!21.22!KDM5D;;chr11:128563948..128564003,+!p1@FLI1!1.31!226.94!FLI1;;chr2:70142232..70142251,+!p1@MXD1!1.31!106.88!MXD1;;chr2:61108695..61108753,+!p1@REL!1.30!127.13!REL;;chr13:41593425..41593480,-!p1@ELF1!1.30!118.78!ELF1;;chr7:149470641..149470694,-!p1@ZNF467!1.30!84.38!ZNF467;;chr5:88179017..88179046,-!p2@MEF2C!1.29!73.13!MEF2C;;chr7:50343634..50343717,+!p2@IKZF1!1.28!18.16!IKZF1;;chr12:54778351..54778378,-!p6@ZNF385A!1.28!18.00!ZNF385A;;chr10:31288398..31288455,-!p2@ZNF438!1.25!19.45!ZNF438;;chr19:33793430..33793447,-!p1@CEBPA!1.24!67.99!CEBPA;;chr12:54694807..54694832,-!p3@NFE2!1.23!16.07!NFE2;;chr9:110252035..110252057,-!p1@KLF4!1.19!226.94!KLF4;;chr21:36421535..36421610,-!p2@RUNX1!1.18!50.15!RUNX1;;chr19:12902289..12902307,+!p1@JUNB!1.16!3029.36!JUNB;;chr9:117150254..117150271,-!p1@AKNA!1.16!37.13!AKNA;;chr2:28618532..28618610,+!p4@FOSL2!1.16!22.98!FOSL2;;chr7:128577972..128578047,+!p1@IRF5!1.16!21.22!IRF5;;chr20:56195474..56195506,-!p1@ZBP1!1.16!13.50!ZBP1;;chr7:137620684..137620711,-!p4@CREB3L2!1.16!13.34!CREB3L2;;chr10:94449703..94449718,+!p1@HHEX!1.15!50.31!HHEX;;chr2:208031943..208031978,-!p5@KLF7!1.15!17.52!KLF7;;chr4:185395633..185395651,-!p2@IRF2!1.14!20.57!IRF2;;chr1:158979872..158979898,+!p3@IFI16!1.12!37.29!IFI16;;chr2:145277882..145277967,-!p3@ZEB2!1.11!20.41!ZEB2;;chr6:15246200..15246214,+!p2@JARID2!1.10!32.31!JARID2;;chr10:51572339..51572376,+!p4@NCOA4!1.10!26.36!NCOA4;;chr9:110250697..110250738,-!p2@KLF4!1.10!13.50!KLF4;;chr6:15246261..15246312,+!p1@JARID2!1.09!272.75!JARID2;;chr3:101546827..101546847,+!p2@NFKBIZ!1.09!16.07!NFKBIZ;;chr8:71316428..71316459,-!p2@NCOA2!1.08!18.48!NCOA2;;chr6:391743..391759,+!p1@IRF4!1.08!11.09!IRF4;;chr19:45251395..45251432,+!p8@BCL3!1.08!11.09!BCL3;;chr2:231090433..231090469,+!p1@SP140!1.08!11.09!SP140;;chr2:238600933..238600985,+!p3@LRRFIP1!1.07!58.66!LRRFIP1;;chr6:106534192..106534224,+!p1@PRDM1!1.07!30.70!PRDM1;;chr14:35872962..35873025,-!p3@NFKBIA!1.05!26.04!NFKBIA;;chr1:40367530..40367597,-!p1@MYCL1!1.05!18.64!MYCL1;;chr4:185395590..185395627,-!p3@IRF2!1.05!12.86!IRF2;;chr17:38497662..38497713,+!p4@RARA!1.05!12.05!RARA;;chr1:156470515..156470542,-!p2@MEF2D!1.04!53.20!MEF2D;;chr1:158979851..158979865,+!p5@IFI16!1.03!21.86!IFI16;;chr5:88179195..88179224,-!p3@MEF2C!1.03!15.43!MEF2C;;chr12:72056800..72056834,+!p1@THAP2!1.03!13.34!THAP2;;chr19:13213662..13213686,-!p1@LYL1!1.01!13.82!LYL1;;chr19:50432132..50432217,+!p2@ATF5!1.01!11.09!ATF5;;chr3:101568349..101568365,+!p1@NFKBIZ!1.00!475.10!NFKBIZ;;chr2:231084659..231084721,-!p1@SP110!1.00!215.05!SP110;;chr10:3827371..3827386,-!p2@KLF6!1.00!77.31!KLF6;;chr6:44233252..44233296,-!p1@NFKBIE!0.99!88.08!NFKBIE;;chr14:35873947..35873965,-!p1@NFKBIA!0.98!550.00!NFKBIA;;chr5:131826457..131826514,-!p1@IRF1!0.98!341.54!IRF1;;chr14:75988771..75988826,+!p1@BATF!0.98!11.57!BATF;;chr4:38665769..38665801,+!p2@KLF3!0.96!75.54!KLF3;;chr8:103667935..103667960,-!p1@KLF10!0.95!364.04!KLF10;;chr16:31885093..31885165,+!p1@ZNF267!0.95!125.69!ZNF267;;chr12:54694738..54694749,-!p5@NFE2!0.95!7.88!NFE2;;chr13:41593392..41593403,-!p7@ELF1!0.95!7.88!ELF1;;chr14:45722360..45722415,-!p1@MIS18BP1!0.94!125.69!MIS18BP1;;chr12:11802753..11802834,+!p2@ETV6!0.94!39.54!ETV6;;chr20:48807430..48807439,+!p8@CEBPB!0.94!11.89!CEBPB;;chr16:88752889..88752921,-!p1@SNAI3!0.94!9.16!SNAI3;;chr3:187463248..187463264,-!p1@BCL6!0.93!166.99!BCL6;;chr20:48807456..48807475,+!p3@CEBPB!0.93!14.95!CEBPB;;chr9:110252074..110252079,-!p3@KLF4!0.93!12.70!KLF4;;chr7:137620650..137620677,-!p3@CREB3L2!0.93!7.55!CREB3L2;;chr21:30672433..30672464,+!p6@BACH1!0.93!7.55!BACH1;;chr21:30671235..30671253,+!p1@BACH1!0.92!96.44!BACH1;;chr2:61108650..61108687,+!p2@REL!0.92!37.13!REL;;chrX:106960180..106960197,-!p2@TSC22D3!0.92!29.09!TSC22D3;;chr16:3313791..3313834,+!p2@ZNF263!0.92!16.72!ZNF263;;chr2:145271342..145271377,-!p5@ZEB2!0.92!7.39!ZEB2;;chr21:34442540..34442560,+!p2@OLIG1!0.92!7.39!OLIG1;;chr8:48650715..48650735,-!p1@CEBPD!0.91!938.48!CEBPD;;chr12:54694653..54694672,-!p2@NFE2!0.91!7.07!NFE2;;chrX:129244454..129244488,-!p1@ELF4!0.90!52.24!ELF4;;chr2:60780753..60780800,-!p1@BCL11A!0.90!36.00!BCL11A;;chr14:75746722..75746777,+!p2@FOS!0.90!9.00!FOS;;chr2:28615716..28615733,+!p1@FOSL2!0.89!334.47!FOSL2;;chr1:8484007..8484061,-!p13@RERE!0.89!8.84!RERE;;chr9:117160738..117160782,-!p2@AKNA!0.87!27.97!AKNA;;chr17:38498594..38498661,+!p2@RARA!0.87!22.50!RARA;;chr14:35872453..35872485,-!p2@NFKBIA!0.87!16.55!NFKBIA;;chr19:36391434..36391450,-!p1@NFKBID!0.87!13.02!NFKBID;;chr5:142782823..142782854,-!p3@NR3C1!0.87!9.32!NR3C1;;chr14:75747250..75747267,+!p5@FOS!0.87!6.43!FOS;;chr8:116681194..116681214,-!p1@TRPS1!0.86!61.40!TRPS1;;chr19:45252008..45252024,+!p2@BCL3!0.86!21.70!BCL3;;chr6:106534230..106534254,+!p2@PRDM1!0.86!16.55!PRDM1;;chr12:72056773..72056796,+!p3@THAP2!0.86!8.36!THAP2;;chr9:88969339..88969422,-!p2@ZCCHC6!0.85!49.82!ZCCHC6;;chr2:208394817..208394834,+!p3@CREB1!0.85!26.04!CREB1;;chr9:137217986..137218049,+!p3@RXRA!0.85!18.16!RXRA;;chr10:35416142..35416169,+!p3@CREM!0.85!16.88!CREM;;chr7:50344251..50344288,+!p3@IKZF1!0.85!6.11!IKZF1;;chr3:187463179..187463201,-!p2@BCL6!0.84!25.88!BCL6;;chr17:38498402..38498445,+!p3@RARA!0.84!22.34!RARA;;chr3:187463220..187463232,-!p3@BCL6!0.84!18.80!BCL6;;chr9:3525727..3525828,-!p2@RFX3!0.84!15.75!RFX3;;chr2:8822176..8822196,+!p1@ID2!0.83!861.17!ID2;;chr2:48541789..48541874,+!p1@FOXN2!0.83!139.19!FOXN2;;chr10:104154246..104154347,+!p3@NFKB2!0.83!37.93!NFKB2;;chrX:131623044..131623089,-!p1@MBNL3!0.83!25.23!MBNL3;;chr21:30671690..30671762,+!p2@BACH1!0.83!21.06!BACH1;;chr9:110251836..110251887,-!p4@KLF4!0.83!7.88!KLF4;;chr2:238600998..238601013,+!p5@LRRFIP1!0.83!5.79!LRRFIP1;;chr6:12011943..12012015,+!p2@HIVEP1!0.82!19.13!HIVEP1;;chr10:94449675..94449694,+!p2@HHEX!0.82!16.07!HHEX;;chr8:116681150..116681164,-!p5@TRPS1!0.82!11.57!TRPS1;;chr2:61108808..61108821,+!p3@REL!0.82!7.23!REL;;chr6:15246741..15246765,+!p9@JARID2!0.82!5.63!JARID2;;chr11:47399920..47399931,-!p7@SPI1!0.82!5.63!SPI1;;chr19:16435625..16435682,+!p1@KLF2!0.81!192.39!KLF2;;chr14:62162258..62162269,+!p2@HIF1A!0.81!57.38!HIF1A;;chr2:70142189..70142223,+!p2@MXD1!0.81!41.79!MXD1;;chr7:17338324..17338341,+!p3@AHR!0.81!19.61!AHR;;chr19:45250948..45250998,+!p3@BCL3!0.81!14.47!BCL3;;chr13:41593405..41593416,-!p9@ELF1!0.81!5.46!ELF1;;chr2:174828545..174828644,-!p1@SP3!0.80!88.08!SP3;;chr2:208031542..208031595,-!p2@KLF7!0.80!40.18!KLF7;;chr5:176735063..176735088,-!p2@MXD3!0.80!5.30!MXD3;;chr21:30671211..30671234,+!p3@BACH1!0.79!27.16!BACH1;;chr20:56195525..56195556,-!p2@ZBP1!0.79!5.14!ZBP1;;chr14:75747296..75747329,+!p4@FOS!0.79!5.14!FOS;;chr5:172483347..172483407,+!p1@C5orf41!0.78!41.47!CREBRF;;chr3:39195075..39195088,-!p1@CSRNP1!0.78!34.56!CSRNP1;;chr5:88179230..88179270,-!p4@MEF2C!0.78!10.45!MEF2C;;chr3:71630690..71630750,-!p11@FOXP1!0.78!8.68!FOXP1;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!0.78!8.52!PCBP2;;chrY:2803415..2803468,+!p1@ZFY!0.78!4.98!ZFY;;chr8:48650697..48650708,-!p2@CEBPD!0.77!40.82!CEBPD;;chr7:150974206..150974255,-!p1@SMARCD3!0.77!33.75!SMARCD3;;chr10:43932296..43932360,+!p1@ZNF487P!0.77!10.77!ZNF487P;;chr13:72441315..72441454,-!p1@DACH1!0.77!10.45!DACH1;;chr2:185463247..185463263,+!p1@ZNF804A!0.77!9.16!ZNF804A;;chr6:15246217..15246228,+!p3@JARID2!0.77!9.00!JARID2;;chr14:75746340..75746368,+!p3@FOS!0.77!4.82!FOS;;chr14:62162285..62162296,+!p3@HIF1A!0.76!27.16!HIF1A;;chr2:157198916..157198978,-!p2@NR4A2!0.76!18.32!NR4A2;;chr9:102584262..102584276,+!p1@NR4A3!0.76!11.41!NR4A3;;chr9:94186101..94186122,-!p1@NFIL3!0.75!71.20!NFIL3;;chr10:31320777..31320834,-!p1@ZNF438!0.75!26.04!ZNF438;;chr21:30671189..30671207,+!p4@BACH1!0.75!17.52!BACH1;;chr14:65569101..65569119,-!p3@MAX!0.75!15.91!MAX;;chr10:35484053..35484076,+!p1@CREM!0.75!12.54!CREM;;chr6:135516877..135516900,+!p5@MYB!0.75!4.66!MYB;;chr14:75746781..75746799,+!p6@FOS!0.75!4.66!FOS;;chrX:106960285..106960299,-!p1@TSC22D3!0.74!134.85!TSC22D3;;chr9:88969303..88969335,-!p1@ZCCHC6!0.74!46.61!ZCCHC6;;chr4:185395191..185395226,-!p4@IRF2!0.74!6.59!IRF2;;chr1:158979686..158979745,+!p1@IFI16!0.73!160.08!IFI16;;chr8:37553261..37553282,+!p2@ZNF703!0.73!37.61!ZNF703;;chr14:64970670..64970712,-!p3@ZBTB25!0.73!10.13!ZBTB25;;chr12:54785074..54785122,-!p2@ZNF385A!0.73!7.07!ZNF385A;;chr4:38665810..38665827,+!p1@KLF3!0.72!70.24!KLF3;;chr1:158979792..158979814,+!p2@IFI16!0.72!45.97!IFI16;;chr12:53774567..53774658,+!p2@SP1!0.72!23.14!SP1;;chr4:140098339..140098392,-!p1@ELF2!0.71!38.41!ELF2;;chr16:29816957..29817031,+!p7@MAZ!0.71!20.89!MAZ;;chr3:71630980..71631110,-!p3@FOXP1!0.71!15.91!FOXP1;;chr18:3448455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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor3.CNhs13540.11910-125G2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor3.CNhs13540.11910-125G2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor3.CNhs13540.11910-125G2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor3.CNhs13540.11910-125G2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252bCD16-%2520Monocytes%252c%2520donor3.CNhs13540.11910-125G2.hg38.nobarcode.ctss.bed.gz
 |id=FF:11910-125G2
 |is_a=EFO:0002091;;FF:0011111
 |is_obsolete=
+|library_id=CNhs13540
+|library_id_phase_based=2:CNhs13540
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11910
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11910
 |name=CD14+CD16- Monocytes, donor3
 |namespace=
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13540,LSID1029,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
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@@ Line 59: / Line 79: @@
 |rna_weight_ug=0.3947
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+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=NFIL3:2.68152917543;SPIB:2.47476698328;SPI1:2.2240886621;CEBPA,B_DDIT3:2.00212781963;FOXN1:1.94204515345;DMAP1_NCOR{1,2}_SMARC:1.87062343763;IRF1,2:1.79916937165;ETS1,2:1.76272738176;TLX2:1.75270932118;NANOG{mouse}:1.65692223467;ATF5_CREB3:1.64506163957;RFX2..5_RFXANK_RFXAP:1.63506262901;MAFB:1.54975757103;IRF7:1.53365702591;HLF:1.51341385495;RUNX1..3:1.51186710345;PAX2:1.47420082538;HMX1:1.45452483356;ELF1,2,4:1.3910845539;TGIF1:1.37907424846;SREBF1,2:1.34179634514;FOXA2:1.33034680374;FOXO1,3,4:1.31549431987;NFKB1_REL_RELA:1.10365411377;FOXP3:1.10213415463;RXRA_VDR{dimer}:1.02033236917;EP300:1.01066381896;HIF1A:1.00005883025;ALX1:0.898139044942;HMGA1,2:0.856389592612;CREB1:0.844437154789;ATF4:0.833559215274;NFE2L2:0.759620187082;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.740025904454;BPTF:0.708937482422;FOX{D1,D2}:0.696855694703;FOX{F1,F2,J1}:0.691641523888;HBP1_HMGB_SSRP1_UBTF:0.673667594655;NKX2-2,8:0.67318789168;NFIX:0.668158293068;FOSL2:0.628693002472;GATA4:0.589975316213;ATF2:0.584394658796;TAL1_TCF{3,4,12}:0.572215705738;CDX1,2,4:0.444011324524;FOX{I1,J2}:0.419263450271;PAX4:0.410775829365;ALX4:0.402017082905;BACH2:0.365442571452;ESRRA:0.342216067222;NFE2:0.337188163065;NANOG:0.334286611782;FOS_FOS{B,L1}_JUN{B,D}:0.314165570504;HOXA9_MEIS1:0.290694911241;STAT2,4,6:0.288091877543;JUN:0.276740316248;NR6A1:0.265289093873;GLI1..3:0.162156513237;OCT4_SOX2{dimer}:0.108788145487;POU1F1:0.0167496298802;MYB:0.0150240915901;TFCP2:-0.00244885863033;RORA:-0.00372676871181;ZBTB16:-0.0141838048957;SPZ1:-0.0160106136035;EN1,2:-0.0270321052633;NR1H4:-0.0612526008117;CUX2:-0.064120755754;ATF6:-0.0730166961701;AHR_ARNT_ARNT2:-0.0867251869738;TOPORS:-0.0984712621069;MYFfamily:-0.129853985115;HNF4A_NR2F1,2:-0.131644199641;T:-0.136348924465;SOX2:-0.142044388787;PITX1..3:-0.152301054572;NFE2L1:-0.166208578749;TFAP4:-0.171633884713;FOXD3:-0.183134048583;POU5F1:-0.189414463894;VSX1,2:-0.200764901257;GATA6:-0.213448618496;TEF:-0.215485544069;STAT1,3:-0.216688775594;PRDM1:-0.256764736229;IKZF2:-0.281598778573;BREu{core}:-0.29431780826;STAT5{A,B}:-0.327928938315;NKX3-2:-0.334074861125;ESR1:-0.351537635549;NKX6-1,2:-0.359926176273;PAX3,7:-0.366709570129;MZF1:-0.403013526887;SMAD1..7,9:-0.41229176953;PRRX1,2:-0.428896892546;HSF1,2:-0.4397034542;FOXQ1:-0.445562787901;GCM1,2:-0.446941872601;PDX1:-0.448762615356;FOXP1:-0.451906149342;NR3C1:-0.455397012694;MYOD1:-0.460038968654;AIRE:-0.4700061284;HNF1A:-0.471780324326;NHLH1,2:-0.475421002589;CRX:-0.478691458345;SRF:-0.482027552555;RXR{A,B,G}:-0.484176446025;RFX1:-0.491055290047;ELK1,4_GABP{A,B1}:-0.496667687481;HOX{A5,B5}:-0.502402684374;EBF1:-0.51065076865;RREB1:-0.511269168166;REST:-0.516992258572;MEF2{A,B,C,D}:-0.55250250714;NR5A1,2:-0.555687118304;HES1:-0.574853832626;KLF4:-0.578422076642;NFATC1..3:-0.588203990739;MTF1:-0.589416258261;ZNF148:-0.591540734948;PAX8:-0.625089006805;PPARG:-0.635498855815;PATZ1:-0.668119955179;ZNF238:-0.681106986217;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.682769521082;TFAP2{A,C}:-0.690225120023;MTE{core}:-0.697880335564;PAX1,9:-0.698680977307;NKX2-3_NKX2-5:-0.701315584875;NKX3-1:-0.727327976558;YY1:-0.742801833817;SOX5:-0.746846120377;XBP1:-0.756156291855;POU2F1..3:-0.764015024934;MED-1{core}:-0.785222976459;ZFP161:-0.810251177854;DBP:-0.82163854538;HAND1,2:-0.829967438067;SOX{8,9,10}:-0.843094602596;ZEB1:-0.851781529118;AR:-0.883871495594;ZNF423:-0.911383133382;PAX5:-0.97467149916;SP1:-0.980757199096;E2F1..5:-0.987640081189;RBPJ:-1.01673580987;ARID5B:-1.01674574961;MAZ:-1.01771610375;ZIC1..3:-1.03077372903;GZF1:-1.03520383391;ZBTB6:-1.03860662635;NKX2-1,4:-1.08864854984;GTF2I:-1.09408479628;LHX3,4:-1.095901281;SNAI1..3:-1.1054192469;LEF1_TCF7_TCF7L1,2:-1.11312645787;EVI1:-1.113243938;LMO2:-1.13764277022;NRF1:-1.15444512512;EGR1..3:-1.15663208001;TFDP1:-1.16492973435;HOX{A4,D4}:-1.17313379546;IKZF1:-1.18597790498;HOX{A6,A7,B6,B7}:-1.22231126599;PBX1:-1.24880605493;TFAP2B:-1.25391853608;PAX6:-1.2670004817;NFY{A,B,C}:-1.31405440783;TLX1..3_NFIC{dimer}:-1.31705156799;ONECUT1,2:-1.33218045314;TEAD1:-1.33300833168;HIC1:-1.3469962462;TBX4,5:-1.37705044726;ADNP_IRX_SIX_ZHX:-1.40204067632;UFEwm:-1.41862425044;TP53:-1.44849456309;GFI1B:-1.46834996164;TBP:-1.47850661987;ZNF384:-1.54862666173;MYBL2:-1.55864194466;POU3F1..4:-1.56103711173;ZNF143:-1.59179034413;FOXL1:-1.63775036479;GTF2A1,2:-1.66225056808;POU6F1:-1.67991799582;FOXM1:-1.71536648048;GFI1:-1.7296119225;SOX17:-1.78746494209;bHLH_family:-1.8286698315;CDC5L:-1.89803801215;XCPE1{core}:-2.03772045234
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11910-125G2;search_select_hide=table117:FF:11910-125G2
 }}

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FF:11910-125G2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:28, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0